python-pyfaidx 0.5.5.2-1 source package in Ubuntu
Changelog
python-pyfaidx (0.5.5.2-1) unstable; urgency=medium
* New upstream version
Closes: #911874
* Standards-Version: 4.2.1
* Secure URI in copyright format
-- Andreas Tille <email address hidden> Sat, 27 Oct 2018 07:11:40 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| python-pyfaidx_0.5.5.2-1.dsc | 2.3 KiB | 69dc776ee7229292a943c545a8bd2d794b63b65e19a63d4e4e4bd4e5e185ba4c |
| python-pyfaidx_0.5.5.2.orig.tar.gz | 91.4 KiB | 29284a25725c50719e24dcf507a152ec0fb0b7b56dd236c2f22dca8c1a4591a6 |
| python-pyfaidx_0.5.5.2-1.debian.tar.xz | 4.1 KiB | b420cb86e83790e558830a5cf1dfaf62bcb3f8cb81a5651500d7cf836d1dc3f8 |
Available diffs
- diff from 0.5.4-1 to 0.5.5.2-1 (17.8 KiB)
No changes file available.
Binary packages built by this source
- python-pyfaidx: No summary available for python-pyfaidx in ubuntu focal.
No description available for python-pyfaidx in ubuntu focal.
- python-pyfaidx-examples: No summary available for python-pyfaidx-examples in ubuntu disco.
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pyfaidx- examples in ubuntu disco.
- python3-pyfaidx: efficient random access to fasta subsequences for Python 3
Samtools provides a function "faidx" (FAsta InDeX), which creates a
small flat index file ".fai" allowing for fast random access to any
subsequence in the indexed FASTA file, while loading a minimal amount of
the file in to memory. This Python module implements pure Python classes
for indexing, retrieval, and in-place modification of FASTA files using
a samtools compatible index. The pyfaidx module is API compatible with
the pygr seqdb module. A command-line script "faidx" is installed
alongside the pyfaidx module, and facilitates complex manipulation of
FASTA files without any programming knowledge.
.
This package provides the Python 3 modules to access fasta files.
