python-pyfaidx 0.4.5.2-1 source package in Ubuntu
Changelog
python-pyfaidx (0.4.5.2-1) unstable; urgency=medium * Initial upload (Closes: #801721) -- Andreas Tille <email address hidden> Tue, 17 Nov 2015 22:36:06 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section | |
---|---|---|---|---|
Xenial | release | universe | misc |
Downloads
File | Size | SHA-256 Checksum |
---|---|---|
python-pyfaidx_0.4.5.2-1.dsc | 2.3 KiB | ccaade672a9f5827f4e9ee534043c45a2ac81a49eea078fa34855928585b17cf |
python-pyfaidx_0.4.5.2.orig.tar.gz | 52.1 KiB | 59e0a9df1a73211a9c801a0f79b13e2d08aeea216a81960b45331fb8265d06ca |
python-pyfaidx_0.4.5.2-1.debian.tar.xz | 3.8 KiB | 53975b96805bab5c42fc7fe8e5966ce939d7a18a1ee0a7ca16acca617070bdc9 |
No changes file available.
Binary packages built by this source
- python-pyfaidx: No summary available for python-pyfaidx in ubuntu yakkety.
No description available for python-pyfaidx in ubuntu yakkety.
- python-pyfaidx-examples: example data for efficient random access to fasta subsequences for Python
Samtools provides a function "faidx" (FAsta InDeX), which creates a
small flat index file ".fai" allowing for fast random access to any
subsequence in the indexed FASTA file, while loading a minimal amount of
the file in to memory. This Python module implements pure Python classes
for indexing, retrieval, and in-place modification of FASTA files using
a samtools compatible index. The pyfaidx module is API compatible with
the pygr seqdb module. A command-line script "faidx" is installed
alongside the pyfaidx module, and facilitates complex manipulation of
FASTA files without any programming knowledge.
.
This package provides example data to test the Python modules.
- python3-pyfaidx: No summary available for python3-pyfaidx in ubuntu yakkety.
No description available for python3-pyfaidx in ubuntu yakkety.