Ubuntu
python-pauvre package

python-pauvre 0.2.3-2 source package in Ubuntu

Changelog

python-pauvre (0.2.3-2) unstable; urgency=medium

  * biopython-1.80.patch: add; migrate away from Bio.SubsMat.
    This patch fixes build time test failures with Biopython 1.80 caused
    by removal of Bio.SubsMat in favor of Bio.Align.substitution_matrices.
    (Closes: 1024835)
  * d/control: declare compliance to standards version 4.6.2.
  * d/copyright: update debian/ authors and year.

 -- Étienne Mollier <email address hidden>  Sun, 18 Dec 2022 15:56:49 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Mantic release universe misc
Lunar release universe misc

Builds

Lunar: [FULLYBUILT] amd64

Downloads

File Size SHA-256 Checksum
python-pauvre_0.2.3-2.dsc 2.4 KiB ab8041c4bc5d9f6b99f746332bd2d6eaa1a0e89f5b5b3c91a32c3862a91c32e1
python-pauvre_0.2.3.orig.tar.gz 60.4 KiB ba756bc9025ae7edafd91092d12a57864f018958fd46b548e9eeda7167ee197d
python-pauvre_0.2.3-2.debian.tar.xz 7.5 KiB 71acb8f2a3b225fafb7a306ae05b5f4f7f063a78e0a52280cc85369c9a89730c

Available diffs

No changes file available.

Binary packages built by this source

python3-pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads

 Pauvre is a plotting package designed for nanopore and PacBio long reads.
 .
 This package currently hosts four scripts for plotting and/or printing stats.
 .
  pauvre marginplot
     Takes a fastq file as input and outputs a marginal histogram with a
     heatmap.
  pauvre stats
     Takes a fastq file as input and prints out a table of stats, including
     how many basepairs/reads there are for a length/mean quality cutoff.
     This is also automagically called when using pauvre marginplot
  pauvre redwood
     Method of representing circular genomes. A redwood plot contains long
     reads as "rings" on the inside, a gene annotation "cambrium/phloem",
     and a RNAseq "bark". The input is .bam files for the long reads and
     RNAseq data, and a .gff file for the annotation.
  pauvre synteny
     Makes a synteny plot of circular genomes. Finds the most parsimonius
     rotation to display the synteny of all the input genomes with the
     fewest crossings-over. Input is one .gff file per circular genome
     and one directory of gene alignments.