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python-freecontact package

python-freecontact 1.1-6build3 source package in Ubuntu

Changelog

python-freecontact (1.1-6build3) lunar; urgency=medium

  * No-change rebuild with Python 3.11 as supported

 -- Graham Inggs <email address hidden>  Wed, 02 Nov 2022 10:53:47 +0000

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Uploaded by:
Graham Inggs
Uploaded to:
Lunar
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

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File Size SHA-256 Checksum
python-freecontact_1.1.orig.tar.gz 64.4 KiB 895e06aa9f7878f7fff34b8f851ee361967a3cc1f3b441de32dbcbf1f31aaa85
python-freecontact_1.1-6build3.debian.tar.xz 4.2 KiB f81f2f5f8b42c627039892381592e53a6be1587a3d204b5c4f9d40471e8dbedc
python-freecontact_1.1-6build3.dsc 2.2 KiB 8ae28bc6980e103d2b70e899bd86602d8e6a737f2ba40feaff0cdaa15e4051da

Available diffs

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Binary packages built by this source

python3-freecontact: fast protein contact predictor - binding for Python3

 FreeContact is a protein residue contact predictor optimized for speed.
 Its input is a multiple sequence alignment. FreeContact can function as an
 accelerated drop-in for the published contact predictors
 EVfold-mfDCA of DS. Marks (2011) and
 PSICOV of D. Jones (2011).
 .
 FreeContact is accelerated by a combination of vector instructions, multiple
 threads, and faster implementation of key parts.
 Depending on the alignment, 8-fold or higher speedups are possible.
 .
 A sufficiently large alignment is required for meaningful results.
 As a minimum, an alignment with an effective (after-weighting) sequence count
 bigger than the length of the query sequence should be used. Alignments with
 tens of thousands of (effective) sequences are considered good input.
 .
 jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
 can be used to generate the alignments, for example.
 .
 This package contains the Python3 binding.

python3-freecontact-dbgsym: debug symbols for python3-freecontact