python-freecontact 1.1-5build1 source package in Ubuntu
Changelog
python-freecontact (1.1-5build1) focal; urgency=medium * No change rebuild against new boost1.71 ABI -- Dimitri John Ledkov <email address hidden> Mon, 03 Feb 2020 21:26:16 +0000
Upload details
- Uploaded by:
- Dimitri John Ledkov
- Uploaded to:
- Focal
- Original maintainer:
- Ubuntu Developers
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section |
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Downloads
File | Size | SHA-256 Checksum |
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python-freecontact_1.1.orig.tar.gz | 64.4 KiB | 895e06aa9f7878f7fff34b8f851ee361967a3cc1f3b441de32dbcbf1f31aaa85 |
python-freecontact_1.1-5build1.debian.tar.xz | 4.0 KiB | b96538e703eaf8a3a8329a0aa7349ea3183d1fd7d6ab004586fd2d1814a59cd2 |
python-freecontact_1.1-5build1.dsc | 2.2 KiB | 246253263d7c70a927d6b80a625fce5f03a925497ba680c43ccbd3c8fb2b2922 |
Available diffs
- diff from 1.1-5 (in Debian) to 1.1-5build1 (562 bytes)
Binary packages built by this source
- python3-freecontact: fast protein contact predictor - binding for Python3
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
.
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
.
This package contains the Python3 binding.
- python3-freecontact-dbgsym: debug symbols for python3-freecontact