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python-freecontact package

python-freecontact 1.1-2build4 source package in Ubuntu

Changelog

python-freecontact (1.1-2build4) bionic; urgency=medium

  * No-change rebuild for boost soname change.

 -- Matthias Klose <email address hidden>  Thu, 26 Oct 2017 17:22:38 +0000

Upload details

Uploaded by:
Matthias Klose
Uploaded to:
Bionic
Original maintainer:
Ubuntu Developers
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Bionic release universe misc

Downloads

File Size SHA-256 Checksum
python-freecontact_1.1.orig.tar.gz 64.4 KiB 895e06aa9f7878f7fff34b8f851ee361967a3cc1f3b441de32dbcbf1f31aaa85
python-freecontact_1.1-2build4.debian.tar.xz 3.1 KiB 64eca6e8295678ef020c5e001deac34bd9dfbee1721973c9c9659320dc59d086
python-freecontact_1.1-2build4.dsc 2.1 KiB 530bcf1f33c82771a82572644801d9670478dba0a7b81091ba88f6f516a22cbf

Available diffs

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Binary packages built by this source

python-freecontact: fast protein contact predictor - binding for Python

 FreeContact is a protein residue contact predictor optimized for speed.
 Its input is a multiple sequence alignment. FreeContact can function as an
 accelerated drop-in for the published contact predictors
 EVfold-mfDCA of DS. Marks (2011) and
 PSICOV of D. Jones (2011).
 .
 FreeContact is accelerated by a combination of vector instructions, multiple
 threads, and faster implementation of key parts.
 Depending on the alignment, 8-fold or higher speedups are possible.
 .
 A sufficiently large alignment is required for meaningful results.
 As a minimum, an alignment with an effective (after-weighting) sequence count
 bigger than the length of the query sequence should be used. Alignments with
 tens of thousands of (effective) sequences are considered good input.
 .
 jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
 can be used to generate the alignments, for example.
 .
 This package contains the Python binding.

python-freecontact-dbgsym: debug symbols for python-freecontact