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python-cutadapt package

python-cutadapt 4.4-1 source package in Ubuntu

Changelog

python-cutadapt (4.4-1) unstable; urgency=medium

  [ Lance Lin ]
  * Team upload.
  * New upstream version
  * d/rules:
    - Clean info.c and _kmer_finder.c (Closes: #1045930)
    - Skip test_run_cutadapt_process during build since the cutadapt,
      executable is generated dueing install step (via easy install)
      add check for PYBUILD_AUTOPKGTEST for skipped test so it can be
      run during autopkgtests
    - Add <!nocheck> to test specific Build-Depends
  * d/copyright: Update year to 2023 for debian/* files
  * d/control:
    - Update homepage URL
    - Replace autopkgtest-pkg-python testsuite with autopkgtest-pkg-pybuild
    - Add B-D on pybuild-plugin-pyproject
  * d/tests: Removed, replaced with autopkgtest-pkg-pybuild to run autopkgtests
  * d/patches/xfail_cutadapt_executable_test.patch: Remove patch since this is
    adjusted in d/rules
  * d/patches/Update__kmer_finder.pyx_to_always_use_a_64-bit_integer.patch:
    Upstream fix: Allow test to pass in i386 with by always using 64-bit integer

  [ Nilesh Patra ]
  * Annotate necessary deps with :native and :any to get package cross-building

 -- Nilesh Patra <email address hidden>  Thu, 28 Sep 2023 23:32:37 +0530

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
python-cutadapt_4.4-1.dsc 1.8 KiB 49959a9b7d5929067e6045093901c54a311b0f25a18e37e4dcc8a8dca2943f58
python-cutadapt_4.4.orig.tar.gz 230.6 KiB 0343da04101c88b7b9845f136bd411c558e63ae9abbfb27248e3fb2d43b299aa
python-cutadapt_4.4-1.debian.tar.xz 8.7 KiB 1d597b7ceafb097449de0447bbf112b162608bc2c383f5c3238b1db227c8e258

Available diffs

No changes file available.

Binary packages built by this source

cutadapt: Clean biological sequences from high-throughput sequencing reads

 Cutadapt helps with biological sequence clean tasks by finding the adapter
 or primer sequences in an error-tolerant way.
 It can also modify and filter reads in various ways.
 Adapter sequences can contain IUPAC wildcard characters.
 Also, paired-end reads and even colorspace data is supported.
 If you want, you can also just demultiplex your input data, without removing
 adapter sequences at all.
 .
 This package contains the user interface.

python3-cutadapt: Clean biological sequences from high-throughput sequencing reads (Python 3)

 Cutadapt helps with biological sequence clean tasks by finding the adapter
 or primer sequences in an error-tolerant way.
 It can also modify and filter reads in various ways.
 Adapter sequences can contain IUPAC wildcard characters.
 Also, paired-end reads and even colorspace data is supported.
 If you want, you can also just demultiplex your input data, without removing
 adapter sequences at all.
 .
 This package contains the Python 3 module.

python3-cutadapt-dbgsym: debug symbols for python3-cutadapt