python-cutadapt 4.4-1 source package in Ubuntu
Changelog
python-cutadapt (4.4-1) unstable; urgency=medium [ Lance Lin ] * Team upload. * New upstream version * d/rules: - Clean info.c and _kmer_finder.c (Closes: #1045930) - Skip test_run_cutadapt_process during build since the cutadapt, executable is generated dueing install step (via easy install) add check for PYBUILD_AUTOPKGTEST for skipped test so it can be run during autopkgtests - Add <!nocheck> to test specific Build-Depends * d/copyright: Update year to 2023 for debian/* files * d/control: - Update homepage URL - Replace autopkgtest-pkg-python testsuite with autopkgtest-pkg-pybuild - Add B-D on pybuild-plugin-pyproject * d/tests: Removed, replaced with autopkgtest-pkg-pybuild to run autopkgtests * d/patches/xfail_cutadapt_executable_test.patch: Remove patch since this is adjusted in d/rules * d/patches/Update__kmer_finder.pyx_to_always_use_a_64-bit_integer.patch: Upstream fix: Allow test to pass in i386 with by always using 64-bit integer [ Nilesh Patra ] * Annotate necessary deps with :native and :any to get package cross-building -- Nilesh Patra <email address hidden> Thu, 28 Sep 2023 23:32:37 +0530
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section |
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Downloads
File | Size | SHA-256 Checksum |
---|---|---|
python-cutadapt_4.4-1.dsc | 1.8 KiB | 49959a9b7d5929067e6045093901c54a311b0f25a18e37e4dcc8a8dca2943f58 |
python-cutadapt_4.4.orig.tar.gz | 230.6 KiB | 0343da04101c88b7b9845f136bd411c558e63ae9abbfb27248e3fb2d43b299aa |
python-cutadapt_4.4-1.debian.tar.xz | 8.7 KiB | 1d597b7ceafb097449de0447bbf112b162608bc2c383f5c3238b1db227c8e258 |
Available diffs
- diff from 4.2-1build1 (in Ubuntu) to 4.4-1 (71.2 KiB)
No changes file available.
Binary packages built by this source
- cutadapt: Clean biological sequences from high-throughput sequencing reads
Cutadapt helps with biological sequence clean tasks by finding the adapter
or primer sequences in an error-tolerant way.
It can also modify and filter reads in various ways.
Adapter sequences can contain IUPAC wildcard characters.
Also, paired-end reads and even colorspace data is supported.
If you want, you can also just demultiplex your input data, without removing
adapter sequences at all.
.
This package contains the user interface.
- python3-cutadapt: Clean biological sequences from high-throughput sequencing reads (Python 3)
Cutadapt helps with biological sequence clean tasks by finding the adapter
or primer sequences in an error-tolerant way.
It can also modify and filter reads in various ways.
Adapter sequences can contain IUPAC wildcard characters.
Also, paired-end reads and even colorspace data is supported.
If you want, you can also just demultiplex your input data, without removing
adapter sequences at all.
.
This package contains the Python 3 module.
- python3-cutadapt-dbgsym: debug symbols for python3-cutadapt