Ubuntu
python-bx package

python-bx 0.8.8-1build1 source package in Ubuntu

Changelog

python-bx (0.8.8-1build1) focal; urgency=medium

  * No-change rebuild to drop python3.7.

 -- Matthias Klose <email address hidden>  Tue, 18 Feb 2020 09:38:39 +0100

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Uploaded by:
Matthias Klose
Uploaded to:
Focal
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Focal release universe misc

Downloads

File Size SHA-256 Checksum
python-bx_0.8.8.orig.tar.gz 1.6 MiB af5f538b8336869d2ad10fef00725d3ac6ef436083f693d883d9933526eb4aae
python-bx_0.8.8-1build1.debian.tar.xz 8.3 KiB 277bb676cf16158cda51880d4d4ad5afb48d9564b1afc7a53470260a71389384
python-bx_0.8.8-1build1.dsc 2.1 KiB f71d107ee918900437b657c60e40271ba37e50f97123a11c0d3da40d80ed3cca

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Binary packages built by this source

python3-bx: library to manage genomic data and its alignment

 The bx-python project is a Python3 library and associated set of scripts to
 allow for rapid implementation of genome scale analyses. The library contains
 a variety of useful modules, but the particular strengths are:
  * Classes for reading and working with genome-scale multiple local
    alignments (in MAF, AXT, and LAV formats)
  * Generic data structure for indexing on disk files that contain blocks of
    data associated with intervals on various sequences (used, for example, to
    provide random access to individual alignments in huge files; optimized
    for use over network filesystems)
  * Data structures for working with intervals on sequences
  * "Binned bitsets" which act just like chromosome sized bit arrays, but
    lazily allocate regions and allow large blocks of all set or all unset
    bits to be stored compactly
  * "Intersecter" for performing fast intersection tests that preserve both
    query and target intervals and associated annotation

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