Ubuntu
python-bx package

python-bx 0.12.0-1 source package in Ubuntu

Changelog

python-bx (0.12.0-1) unstable; urgency=medium

  * d/rules,d/pybuild.testfiles: cleaner way of handling the test data
  * New upstream version
  * Standards-Version: 4.6.2 (routine-update)
  * d/patches/{post-install-testing,pytest8,strlen_missing_include}:
    removed, applied upstream.
  * Forwarded remaining patches upstream
  * d/lintian-overrides: fix mismatched tag
  * d/patches/spelling: fix typos

 -- Michael R. Crusoe <email address hidden>  Wed, 03 Jul 2024 17:31:02 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Oracular release universe misc

Downloads

File Size SHA-256 Checksum
python-bx_0.12.0-1.dsc 2.2 KiB 09d796888272712511358be1ea8404ff02417b663561138a58abf26eced2acf9
python-bx_0.12.0.orig.tar.gz 1.6 MiB 0033ef742fd966421226cef843937f3c6cdf548c4fc7439930b583a25fc70a2a
python-bx_0.12.0-1.debian.tar.xz 13.7 KiB 0e47c7174ec6230fe458f15146e8186f42af4f7e191bc3c283fccc0510410acc

Available diffs

No changes file available.

Binary packages built by this source

python3-bx: library to manage genomic data and its alignment

 The bx-python project is a Python3 library and associated set of scripts to
 allow for rapid implementation of genome scale analyses. The library contains
 a variety of useful modules, but the particular strengths are:
  * Classes for reading and working with genome-scale multiple local
    alignments (in MAF, AXT, and LAV formats)
  * Generic data structure for indexing on disk files that contain blocks of
    data associated with intervals on various sequences (used, for example, to
    provide random access to individual alignments in huge files; optimized
    for use over network filesystems)
  * Data structures for working with intervals on sequences
  * "Binned bitsets" which act just like chromosome sized bit arrays, but
    lazily allocate regions and allow large blocks of all set or all unset
    bits to be stored compactly
  * "Intersecter" for performing fast intersection tests that preserve both
    query and target intervals and associated annotation

python3-bx-dbgsym: debug symbols for python3-bx