Ubuntu
pybigwig package

pybigwig 0.3.17-1 source package in Ubuntu

Changelog

pybigwig (0.3.17-1) unstable; urgency=medium

  [ Steffen Möller ]
  * Adjusted maintainer for team maintenance

  [ Diane Trout ]
  * Remove python2 tests since it was removed (Closes: #930762)
  * Remove commented out Python2 package block
  * New upstream version 0.3.17

 -- Diane Trout <email address hidden>  Wed, 04 Sep 2019 21:26:01 -0700

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

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File Size SHA-256 Checksum
pybigwig_0.3.17-1.dsc 2.1 KiB 8a6013b5b13aa79c45e2ee661a2ecd1e45de28dc61463232478def65354ce8d6
pybigwig_0.3.17.orig.tar.gz 28.9 KiB 0602aa8fd8e89e28932943a98ecfeb7050696405351f7990c3ee514f92611ece
pybigwig_0.3.17-1.debian.tar.xz 3.9 KiB 6dcebb3878ba0c5969cfffe1623fdd38544349b33f3ce5dce56380e31ade1d74

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Binary packages built by this source

python3-pybigwig: Python 3 module for quick access to bigBed and bigWig files

 This is a Python extension, written in C, for quick access to bigBed files,
 and access to and creation of bigWig files.
 .
 The bigWig format was originally created in the context of genome
 browsers. There, computing exact summary statistics for a given interval
 is less important than quickly being able to compute an approximate
 statistic. Because of this, bigWig files contain not only interval-value
 associations, but also `sum of values`/`sum of squared values`/`minimum
 value`/`maximum value`/`number of bases covered` for equally sized
 bins of various sizes. These different sizes are referred to as "zoom
 levels". The smallest zoom level has bins that are 16 times the mean
 interval size in the file and each subsequent zoom level has bins 4 times
 larger than the previous. This methodology is used in Kent's tools and,
 therefore, likely used in almost every currently existing bigWig file.
 .
 When a bigWig file is queried for a summary statistic, the size of the
 interval is used to determine whether to use a zoom level and, if so,
 which one. The optimal zoom level is that which has the largest bins no
 more than half the width of the desired interval. If no such zoom level
 exists, the original intervals are instead used for the calculation.

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