Ubuntu
prottest package

prottest 3.4.2+dfsg-6 source package in Ubuntu

Changelog

prottest (3.4.2+dfsg-6) unstable; urgency=medium

  * Re-activate real test suggested by Tassia
  * Fix watchfile to detect new versions on github
  * Standards-Version: 4.6.0 (routine-update)

 -- Andreas Tille <email address hidden>  Tue, 12 Oct 2021 16:14:55 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Builds

Jammy: [FULLYBUILT] amd64

Downloads

File Size SHA-256 Checksum
prottest_3.4.2+dfsg-6.dsc 2.1 KiB 47f8b0103ccc529dac498ea7ac5a93f3ab7824671d5fda8e9a9f7628ce6f3f55
prottest_3.4.2+dfsg.orig.tar.xz 249.0 KiB b2cfcb76e40ada8b00b36c83e81c6af7df2f9f11d7556e6e1501e4f76b4add36
prottest_3.4.2+dfsg-6.debian.tar.xz 6.7 KiB 6e2aef6a3b22ccc31da780f0203835577f0bab5c85f25bcfff27c670707a8888

Available diffs

No changes file available.

Binary packages built by this source

prottest: selection of best-fit models of protein evolution

 PROTTEST (ModelTest's relative) is a program for selecting the model of
 protein evolution that best fits a given set of sequences (alignment).
 This java program is based on the Phyml program (for maximum likelihood
 calculations and optimization of parameters) and uses the PAL library as
 well. Models included are empirical substitution matrices (such as WAG,
 LG, mtREV, Dayhoff, DCMut, JTT, VT, Blosum62, CpREV, RtREV, MtMam,
 MtArt, HIVb, and HIVw) that indicate relative rates of amino acid
 replacement, and specific improvements (+I:invariable sites, +G: rate
 heterogeneity among sites, +F: observed amino acid frequencies) to
 account for the evolutionary constraints impossed by conservation of
 protein structure and function. ProtTest uses the Akaike Information
 Criterion (AIC) and other statistics (AICc and BIC) to find which of the
 candidate models best fits the data at hand.