prokka apt package for Ubuntu 20 is unstable.

Bug #1960483 reported by Abraham
6
This bug affects 1 person
Affects Status Importance Assigned to Milestone
prokka (Ubuntu)
New
Undecided
Unassigned

Bug Description

MSG: Failed to load module Bio::SearchIO::hmmer3. Can't locate Bio/SearchIO/hmmer3.pm in @INC (you may need to install the Bio::SearchIO::hmmer3 module) (@INC contains: /home/abraham/anaconda3/envs/prokka_env/lib/perl5/5.32/site_perl /home/abraham/anaconda3/envs/prokka_env/lib/perl5/site_perl /home/abraham/anaconda3/envs/prokka_env/lib/perl5/5.32/vendor_perl /home/abraham/anaconda3/envs/prokka_env/lib/perl5/vendor_perl /home/abraham/anaconda3/envs/prokka_env/lib/perl5/5.32/core_perl /home/abraham/anaconda3/envs/prokka_env/lib/perl5/core_perl .) at /home/abraham/anaconda3/envs/prokka_env/lib/perl5/site_perl/Bio/Root/Root.pm line 520.

STACK Bio::Root::Root::_load_module /home/abraham/anaconda3/envs/prokka_env/lib/perl5/site_perl/Bio/Root/Root.pm:522
STACK (eval) /home/abraham/anaconda3/envs/prokka_env/lib/perl5/site_perl/Bio/SearchIO.pm:620
STACK Bio::SearchIO::_load_format_module /home/abraham/anaconda3/envs/prokka_env/lib/perl5/site_perl/Bio/SearchIO.pm:619
STACK Bio::SearchIO::new /home/abraham/anaconda3/envs/prokka_env/lib/perl5/site_perl/Bio/SearchIO.pm:217
STACK toplevel /home/abraham/anaconda3/envs/prokka_env/bin/prokka:1113
-------------------------------------

For more information about the SearchIO system please see the SearchIO docs.
This includes ways of checking for formats at compile time, not run time
Can't call method "next_result" on an undefined value at /home/abraham/anaconda3/envs/prokka_env/bin/prokka line 1114.

ProblemType: Bug
DistroRelease: Ubuntu 20.04
Package: ubiquity (not installed)
ProcVersionSignature: Ubuntu 5.13.0-28.31~20.04.1-generic 5.13.19
Uname: Linux 5.13.0-28-generic x86_64
ApportVersion: 2.20.11-0ubuntu27.21
Architecture: amd64
CasperMD5CheckResult: skip
CurrentDesktop: ubuntu:GNOME
Date: Thu Feb 10 01:59:41 2022
InstallCmdLine: BOOT_IMAGE=/casper/vmlinuz file=/cdrom/preseed/ubuntu.seed maybe-ubiquity quiet splash ---
InstallationDate: Installed on 2022-02-01 (9 days ago)
InstallationMedia: Ubuntu 20.04.3 LTS "Focal Fossa" - Release amd64 (20210819)
SourcePackage: ubiquity
Symptom: installation
UpgradeStatus: No upgrade log present (probably fresh install)

Revision history for this message
Abraham (culupu) wrote :
Revision history for this message
Marc Deslauriers (mdeslaur) wrote : Bug is not a security issue

Thanks for taking the time to report this bug and helping to make Ubuntu better. We appreciate the difficulties you are facing, but this appears to be a "regular" (non-security) bug. I have unmarked it as a security issue since this bug does not show evidence of allowing attackers to cross privilege boundaries nor directly cause loss of data/privacy. Please feel free to report any other bugs you may find.

information type: Private Security → Public
Paul White (paulw2u)
affects: ubiquity (Ubuntu) → prokka (Ubuntu)
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