profphd 1.0.42-1 source package in Ubuntu
Changelog
profphd (1.0.42-1) unstable; urgency=medium * Moved debian/upstream to debian/upstream/metapackages * remove redundant stuff from d/watch * debhelper 9 * Priority: optional * short dh instead of cdbs * cme fix dpkg-control * DEP5 fix -- Andreas Tille <email address hidden> Fri, 31 Jul 2015 19:29:28 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- all
- Section:
- science
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Xenial | release | universe | science |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| profphd_1.0.42-1.dsc | 2.0 KiB | cc84c3cfa5df1fdf934b0e1eb0fc8cf35aaeade3e97a016cc933dab20e00339b |
| profphd_1.0.42.orig.tar.xz | 4.3 MiB | 844d05c9d16c724a15c1c5b86289c0446016e74527a6c46b032b71c65c17c72f |
| profphd_1.0.42-1.debian.tar.xz | 5.3 KiB | 8634a5af1a026b0dcd372493dbbb27c758764866dd6a3945a72dd379ecf8e3dc |
Available diffs
- diff from 1.0.40-1 to 1.0.42-1 (11.5 KiB)
No changes file available.
Binary packages built by this source
- profphd: secondary structure and solvent accessibility predictor
This package provides prof(1), the protein secondary structure, accessibility
and transmembrane helix predictor from Burkhard Rost. Prediction is either
done from protein sequence alone or from an alignment - the latter should be
used for optimal performance.
.
How well does prof(1) perform?
.
* Secondary structure is predicted at an expected average accuracy > 72% for
the three states helix, strand and loop.
.
* Solvent accessibility is predicted at a correlation coefficient
(correlation between experimentally observed and predicted relative
solvent accessibility) of 0.54
.
* Transmembrane helix prediction has an expected per-residue accuracy of
about 95%. The number of false positives, i.e., transmembrane helices
predicted in globular proteins, is about 2%.
