prodigal 1:2.6.3-6 source package in Ubuntu
Changelog
prodigal (1:2.6.3-6) unstable; urgency=medium * Fix watch file * Standards-Version: 4.6.1 (routine-update) -- Andreas Tille <email address hidden> Tue, 06 Dec 2022 14:00:03 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section | |
---|---|---|---|---|
Oracular | release | universe | misc | |
Noble | release | universe | misc | |
Mantic | release | universe | misc | |
Lunar | release | universe | misc |
Downloads
File | Size | SHA-256 Checksum |
---|---|---|
prodigal_2.6.3-6.dsc | 1.9 KiB | 95d30d7920c55931a643135694c70fb846d085288b071cfedcd0cd8cb932e4ee |
prodigal_2.6.3.orig.tar.gz | 596.6 KiB | 89094ad4bff5a8a8732d899f31cec350f5a4c27bcbdd12663f87c9d1f0ec599f |
prodigal_2.6.3-6.debian.tar.xz | 48.1 KiB | e47e360e0d4a97a361ed1cb6c294072a9d847f2a28a88e7d406122b4fa9c8583 |
Available diffs
- diff from 1:2.6.3-5 to 1:2.6.3-6 (672 bytes)
No changes file available.
Binary packages built by this source
- prodigal: Microbial (bacterial and archaeal) gene finding program
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a
microbial (bacterial and archaeal) gene finding program developed at
Oak Ridge National Laboratory and the University of Tennessee.
Key features of Prodigal include:
.
Speed: Prodigal is an extremely fast gene recognition tool
(written in very vanilla C). It can analyze an entire microbial genome
in 30 seconds or less.
.
Accuracy: Prodigal is a highly accurate gene finder.
It correctly locates the 3' end of every gene in the experimentally verified
Ecogene data set (except those containing introns).
It possesses a very sophisticated ribosomal binding site scoring system that
enables it to locate the translation initiation site with great accuracy
(96% of the 5' ends in the Ecogene data set are located correctly).
.
Specificity: Prodigal's false positive rate compares favorably with other
gene identification programs, and usually falls under 5%.
.
GC-Content Indifferent: Prodigal performs well even in high GC genomes,
with over a 90% perfect match (5'+3') to the Pseudomonas aeruginosa curated
annotations.
.
Metagenomic Version: Prodigal can run in metagenomic mode and analyze
sequences even when the organism is unknown.
.
Ease of Use: Prodigal can be run in one step on a single genomic sequence
or on a draft genome containing many sequences. It does not need to be
supplied with any knowledge of the organism, as it learns all the properties
it needs to on its own.
- prodigal-dbgsym: debug symbols for prodigal