RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '40d673dea0730cd127b036b1be14a480ebd7b350', '/home/buildd/filecache-default/0d41d6186070efeeaf989ff4911be7f96d5541ca'] Synching the system clock with the buildd NTP service... 18 Nov 11:34:30 ntpdate[12276]: adjust time server 10.211.37.1 offset 0.001794 sec Unpacking chroot for build 40d673dea0730cd127b036b1be14a480ebd7b350 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '40d673dea0730cd127b036b1be14a480ebd7b350'] Mounting chroot for build 40d673dea0730cd127b036b1be14a480ebd7b350 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '40d673dea0730cd127b036b1be14a480ebd7b350', 'deb http://ftpmaster.internal/ubuntu natty main universe'] Overriding sources.list in build-40d673dea0730cd127b036b1be14a480ebd7b350 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '40d673dea0730cd127b036b1be14a480ebd7b350', 'i386'] Updating debian chroot for build 40d673dea0730cd127b036b1be14a480ebd7b350 Get:1 http://ftpmaster.internal natty Release.gpg [198 B] Ign http://ftpmaster.internal/ubuntu/ natty/main Translation-en Ign http://ftpmaster.internal/ubuntu/ natty/universe Translation-en Get:2 http://ftpmaster.internal natty Release [39.8 kB] Get:3 http://ftpmaster.internal natty/main i386 Packages [1517 kB] Get:4 http://ftpmaster.internal natty/universe i386 Packages [5992 kB] Fetched 7549 kB in 8s (927 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: advancecomp optipng The following packages will be upgraded: apt apt-transport-https binutils bsdutils build-essential busybox-initramfs bzip2 cpio cpp cpp-4.4 cpp-4.5 dash debianutils dpkg dpkg-dev g++ g++-4.4 g++-4.5 gcc gcc-4.4 gcc-4.4-base gcc-4.5 gcc-4.5-base grep hostname initscripts libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libdb4.8 libdpkg-perl libdrm-intel1 libdrm-nouveau1 libdrm-radeon1 libdrm2 libgcc1 libglib2.0-0 libgomp1 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libldap-2.4-2 liblzma2 libpam-modules libpam-runtime libpam0g libplymouth2 libstdc++6 libstdc++6-4.4-dev libstdc++6-4.5-dev libudev0 libuuid1 linux-libc-dev manpages manpages-dev mount netbase patch perl perl-base perl-modules pkgbinarymangler plymouth procps sed sensible-utils sysv-rc sysvinit-utils tar tzdata udev util-linux xz-utils 77 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 65.9 MB of archives. After this operation, 3158 kB disk space will be freed. WARNING: The following packages cannot be authenticated! sensible-utils debianutils dpkg dash grep libc-dev-bin libc6-dev libc-bin libc6 linux-libc-dev libgomp1 gcc-4.5-base libgcc1 cpp-4.5 libstdc++6-4.5-dev g++-4.5 gcc-4.5 libstdc++6 binutils tzdata sysvinit-utils sysv-rc mount initscripts hostname perl-modules bzip2 libbz2-1.0 libdb4.8 perl perl-base sed tar util-linux bsdutils libpam-modules apt libuuid1 libblkid1 liblzma2 libpam-runtime libpam0g xz-utils netbase busybox-initramfs cpio libdrm2 libdrm-intel1 libdrm-nouveau1 libdrm-radeon1 libglib2.0-0 procps udev plymouth libplymouth2 libudev0 apt-transport-https cpp libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libldap-2.4-2 manpages advancecomp gcc g++ dpkg-dev libdpkg-perl patch build-essential g++-4.4 libstdc++6-4.4-dev gcc-4.4 cpp-4.4 gcc-4.4-base manpages-dev optipng pkgbinarymangler Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ natty/main sensible-utils all 0.0.5ubuntu1 [7296 B] Get:2 http://ftpmaster.internal/ubuntu/ natty/main debianutils i386 3.4.2 [44.4 kB] Get:3 http://ftpmaster.internal/ubuntu/ natty/main dpkg i386 1.15.8.5ubuntu2 [1876 kB] Get:4 http://ftpmaster.internal/ubuntu/ natty/main dash i386 0.5.5.1-7.2ubuntu1 [78.3 kB] Get:5 http://ftpmaster.internal/ubuntu/ natty/main grep i386 2.6.3-3ubuntu1 [195 kB] Get:6 http://ftpmaster.internal/ubuntu/ natty/main libc-dev-bin i386 2.12.1-0ubuntu9 [217 kB] Get:7 http://ftpmaster.internal/ubuntu/ natty/main libc6-dev i386 2.12.1-0ubuntu9 [4910 kB] Get:8 http://ftpmaster.internal/ubuntu/ natty/main libc-bin i386 2.12.1-0ubuntu9 [738 kB] Get:9 http://ftpmaster.internal/ubuntu/ natty/main libc6 i386 2.12.1-0ubuntu9 [3813 kB] Get:10 http://ftpmaster.internal/ubuntu/ natty/main linux-libc-dev i386 2.6.37-5.13 [764 kB] Get:11 http://ftpmaster.internal/ubuntu/ natty/main libgomp1 i386 4.5.1-10ubuntu1 [24.0 kB] Get:12 http://ftpmaster.internal/ubuntu/ natty/main gcc-4.5-base i386 4.5.1-10ubuntu1 [12.7 kB] Get:13 http://ftpmaster.internal/ubuntu/ natty/main libgcc1 i386 1:4.5.1-10ubuntu1 [51.5 kB] Get:14 http://ftpmaster.internal/ubuntu/ natty/main cpp-4.5 i386 4.5.1-10ubuntu1 [4140 kB] Get:15 http://ftpmaster.internal/ubuntu/ natty/main libstdc++6-4.5-dev i386 4.5.1-10ubuntu1 [1526 kB] Get:16 http://ftpmaster.internal/ubuntu/ natty/main g++-4.5 i386 4.5.1-10ubuntu1 [5491 kB] Get:17 http://ftpmaster.internal/ubuntu/ natty/main gcc-4.5 i386 4.5.1-10ubuntu1 [6856 kB] Get:18 http://ftpmaster.internal/ubuntu/ natty/main libstdc++6 i386 4.5.1-10ubuntu1 [333 kB] Get:19 http://ftpmaster.internal/ubuntu/ natty/main binutils i386 2.20.90.20101105-0ubuntu1 [2159 kB] Get:20 http://ftpmaster.internal/ubuntu/ natty/main tzdata all 2010o-1 [672 kB] Get:21 http://ftpmaster.internal/ubuntu/ natty/main sysvinit-utils i386 2.87dsf-4ubuntu19 [110 kB] Get:22 http://ftpmaster.internal/ubuntu/ natty/main sysv-rc all 2.87dsf-4ubuntu19 [79.5 kB] Get:23 http://ftpmaster.internal/ubuntu/ natty/main mount i386 2.17.2-3.3ubuntu1 [125 kB] Get:24 http://ftpmaster.internal/ubuntu/ natty/main initscripts i386 2.87dsf-4ubuntu19 [73.9 kB] Get:25 http://ftpmaster.internal/ubuntu/ natty/main hostname i386 3.05ubuntu1 [12.9 kB] Get:26 http://ftpmaster.internal/ubuntu/ natty/main perl-modules all 5.10.1-16ubuntu1 [3440 kB] Get:27 http://ftpmaster.internal/ubuntu/ natty/main bzip2 i386 1.0.5-6 [47.3 kB] Get:28 http://ftpmaster.internal/ubuntu/ natty/main libbz2-1.0 i386 1.0.5-6 [44.7 kB] Get:29 http://ftpmaster.internal/ubuntu/ natty/main libdb4.8 i386 4.8.30-2ubuntu1 [657 kB] Get:30 http://ftpmaster.internal/ubuntu/ natty/main perl i386 5.10.1-16ubuntu1 [3748 kB] Get:31 http://ftpmaster.internal/ubuntu/ natty/main perl-base i386 5.10.1-16ubuntu1 [926 kB] Get:32 http://ftpmaster.internal/ubuntu/ natty/main sed i386 4.2.1-8 [135 kB] Get:33 http://ftpmaster.internal/ubuntu/ natty/main tar i386 1.25-2 [202 kB] Get:34 http://ftpmaster.internal/ubuntu/ natty/main util-linux i386 2.17.2-3.3ubuntu1 [476 kB] Get:35 http://ftpmaster.internal/ubuntu/ natty/main bsdutils i386 1:2.17.2-3.3ubuntu1 [33.1 kB] Get:36 http://ftpmaster.internal/ubuntu/ natty/main libpam-modules i386 1.1.1-4ubuntu2 [323 kB] Get:37 http://ftpmaster.internal/ubuntu/ natty/main apt i386 0.8.8ubuntu3 [2024 kB] Get:38 http://ftpmaster.internal/ubuntu/ natty/main libuuid1 i386 2.17.2-3.3ubuntu1 [14.4 kB] Get:39 http://ftpmaster.internal/ubuntu/ natty/main libblkid1 i386 2.17.2-3.3ubuntu1 [62.1 kB] Get:40 http://ftpmaster.internal/ubuntu/ natty/main liblzma2 i386 5.0.0-2 [85.6 kB] Get:41 http://ftpmaster.internal/ubuntu/ natty/main libpam-runtime all 1.1.1-4ubuntu2 [85.3 kB] Get:42 http://ftpmaster.internal/ubuntu/ natty/main libpam0g i386 1.1.1-4ubuntu2 [91.7 kB] Get:43 http://ftpmaster.internal/ubuntu/ natty/main xz-utils i386 5.0.0-2 [90.0 kB] Get:44 http://ftpmaster.internal/ubuntu/ natty/main netbase all 4.43ubuntu1 [12.8 kB] Get:45 http://ftpmaster.internal/ubuntu/ natty/main busybox-initramfs i386 1:1.17.1-7ubuntu2 [146 kB] Get:46 http://ftpmaster.internal/ubuntu/ natty/main cpio i386 2.11-5ubuntu1 [104 kB] Get:47 http://ftpmaster.internal/ubuntu/ natty/main libdrm2 i386 2.4.22-2ubuntu1 [21.6 kB] Get:48 http://ftpmaster.internal/ubuntu/ natty/main libdrm-intel1 i386 2.4.22-2ubuntu1 [21.9 kB] Get:49 http://ftpmaster.internal/ubuntu/ natty/main libdrm-nouveau1 i386 2.4.22-2ubuntu1 [12.4 kB] Get:50 http://ftpmaster.internal/ubuntu/ natty/main libdrm-radeon1 i386 2.4.22-2ubuntu1 [13.0 kB] Get:51 http://ftpmaster.internal/ubuntu/ natty/main libglib2.0-0 i386 2.27.3-0ubuntu1 [1097 kB] Get:52 http://ftpmaster.internal/ubuntu/ natty/main procps i386 1:3.2.8-9ubuntu5 [210 kB] Get:53 http://ftpmaster.internal/ubuntu/ natty/main udev i386 164-3 [328 kB] Get:54 http://ftpmaster.internal/ubuntu/ natty/main plymouth i386 0.8.2-2ubuntu5.1 [113 kB] Get:55 http://ftpmaster.internal/ubuntu/ natty/main libplymouth2 i386 0.8.2-2ubuntu5.1 [89.5 kB] Get:56 http://ftpmaster.internal/ubuntu/ natty/main libudev0 i386 164-3 [26.2 kB] Get:57 http://ftpmaster.internal/ubuntu/ natty/main apt-transport-https i386 0.8.8ubuntu3 [20.1 kB] Get:58 http://ftpmaster.internal/ubuntu/ natty/main cpp i386 4:4.5.1-1ubuntu3 [37.2 kB] Get:59 http://ftpmaster.internal/ubuntu/ natty/main libk5crypto3 i386 1.8.3+dfsg-2 [74.0 kB] Get:60 http://ftpmaster.internal/ubuntu/ natty/main libgssapi-krb5-2 i386 1.8.3+dfsg-2 [97.7 kB] Get:61 http://ftpmaster.internal/ubuntu/ natty/main libkrb5-3 i386 1.8.3+dfsg-2 [324 kB] Get:62 http://ftpmaster.internal/ubuntu/ natty/main libkrb5support0 i386 1.8.3+dfsg-2 [19.4 kB] Get:63 http://ftpmaster.internal/ubuntu/ natty/main libldap-2.4-2 i386 2.4.23-6ubuntu2 [160 kB] Get:64 http://ftpmaster.internal/ubuntu/ natty/main manpages all 3.27-1ubuntu1 [571 kB] Get:65 http://ftpmaster.internal/ubuntu/ natty/main advancecomp i386 1.15-1 [301 kB] Get:66 http://ftpmaster.internal/ubuntu/ natty/main gcc i386 4:4.5.1-1ubuntu3 [5068 B] Get:67 http://ftpmaster.internal/ubuntu/ natty/main g++ i386 4:4.5.1-1ubuntu3 [1446 B] Get:68 http://ftpmaster.internal/ubuntu/ natty/main dpkg-dev all 1.15.8.5ubuntu2 [451 kB] Get:69 http://ftpmaster.internal/ubuntu/ natty/main libdpkg-perl all 1.15.8.5ubuntu2 [179 kB] Get:70 http://ftpmaster.internal/ubuntu/ natty/main patch i386 2.6-3 [122 kB] Get:71 http://ftpmaster.internal/ubuntu/ natty/main build-essential i386 11.5ubuntu1 [5920 B] Get:72 http://ftpmaster.internal/ubuntu/ natty/main g++-4.4 i386 4.4.5-7ubuntu1 [4776 kB] Get:73 http://ftpmaster.internal/ubuntu/ natty/main libstdc++6-4.4-dev i386 4.4.5-7ubuntu1 [1419 kB] Get:74 http://ftpmaster.internal/ubuntu/ natty/main gcc-4.4 i386 4.4.5-7ubuntu1 [3003 kB] Get:75 http://ftpmaster.internal/ubuntu/ natty/main cpp-4.4 i386 4.4.5-7ubuntu1 [3607 kB] Get:76 http://ftpmaster.internal/ubuntu/ natty/main gcc-4.4-base i386 4.4.5-7ubuntu1 [13.7 kB] Get:77 http://ftpmaster.internal/ubuntu/ natty/main manpages-dev all 3.27-1ubuntu1 [1627 kB] Get:78 http://ftpmaster.internal/ubuntu/ natty/main optipng i386 0.6.4-1 [84.8 kB] Get:79 http://ftpmaster.internal/ubuntu/ natty/main pkgbinarymangler all 84 [21.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 65.9 MB in 3s (19.9 MB/s) (Reading database ... 14388 files and directories currently installed.) Preparing to replace sensible-utils 0.0.4ubuntu1 (using .../sensible-utils_0.0.5ubuntu1_all.deb) ... Unpacking replacement sensible-utils ... Setting up sensible-utils (0.0.5ubuntu1) ... (Reading database ... 14389 files and directories currently installed.) Preparing to replace debianutils 3.4.1 (using .../debianutils_3.4.2_i386.deb) ... Unpacking replacement debianutils ... Setting up debianutils (3.4.2) ... (Reading database ... 14399 files and directories currently installed.) Preparing to replace dpkg 1.15.8.5ubuntu1 (using .../dpkg_1.15.8.5ubuntu2_i386.deb) ... Unpacking replacement dpkg ... Setting up dpkg (1.15.8.5ubuntu2) ... (Reading database ... 14398 files and directories currently installed.) Preparing to replace dash 0.5.5.1-7ubuntu1 (using .../dash_0.5.5.1-7.2ubuntu1_i386.deb) ... Unpacking replacement dash ... Setting up dash (0.5.5.1-7.2ubuntu1) ... (Reading database ... 14397 files and directories currently installed.) Preparing to replace grep 2.6.3-3 (using .../grep_2.6.3-3ubuntu1_i386.deb) ... Unpacking replacement grep ... Setting up grep (2.6.3-3ubuntu1) ... (Reading database ... 14396 files and directories currently installed.) Preparing to replace libc-dev-bin 2.12.1-0ubuntu7 (using .../libc-dev-bin_2.12.1-0ubuntu9_i386.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libc6-dev 2.12.1-0ubuntu7 (using .../libc6-dev_2.12.1-0ubuntu9_i386.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-bin 2.12.1-0ubuntu7 (using .../libc-bin_2.12.1-0ubuntu9_i386.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.12.1-0ubuntu9) ... (Reading database ... 14396 files and directories currently installed.) Preparing to replace libc6 2.12.1-0ubuntu7 (using .../libc6_2.12.1-0ubuntu9_i386.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.12.1-0ubuntu9) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14396 files and directories currently installed.) Preparing to replace linux-libc-dev 2.6.36-1.6 (using .../linux-libc-dev_2.6.37-5.13_i386.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace libgomp1 4.5.1-9ubuntu1 (using .../libgomp1_4.5.1-10ubuntu1_i386.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.5-base 4.5.1-9ubuntu1 (using .../gcc-4.5-base_4.5.1-10ubuntu1_i386.deb) ... Unpacking replacement gcc-4.5-base ... Setting up gcc-4.5-base (4.5.1-10ubuntu1) ... (Reading database ... 14397 files and directories currently installed.) Preparing to replace libgcc1 1:4.5.1-9ubuntu1 (using .../libgcc1_1%3a4.5.1-10ubuntu1_i386.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.5.1-10ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14397 files and directories currently installed.) Preparing to replace cpp-4.5 4.5.1-9ubuntu1 (using .../cpp-4.5_4.5.1-10ubuntu1_i386.deb) ... Unpacking replacement cpp-4.5 ... Preparing to replace libstdc++6-4.5-dev 4.5.1-9ubuntu1 (using .../libstdc++6-4.5-dev_4.5.1-10ubuntu1_i386.deb) ... Unpacking replacement libstdc++6-4.5-dev ... Preparing to replace g++-4.5 4.5.1-9ubuntu1 (using .../g++-4.5_4.5.1-10ubuntu1_i386.deb) ... Unpacking replacement g++-4.5 ... Preparing to replace gcc-4.5 4.5.1-9ubuntu1 (using .../gcc-4.5_4.5.1-10ubuntu1_i386.deb) ... Unpacking replacement gcc-4.5 ... Preparing to replace libstdc++6 4.5.1-9ubuntu1 (using .../libstdc++6_4.5.1-10ubuntu1_i386.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.5.1-10ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14395 files and directories currently installed.) Preparing to replace binutils 2.20.51.20101014-0ubuntu1 (using .../binutils_2.20.90.20101105-0ubuntu1_i386.deb) ... Unpacking replacement binutils ... Preparing to replace tzdata 2010m-1 (using .../tzdata_2010o-1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2010o-1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Nov 18 11:35:05 UTC 2010. Universal Time is now: Thu Nov 18 11:35:05 UTC 2010. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 14389 files and directories currently installed.) Preparing to replace sysvinit-utils 2.87dsf-4ubuntu18 (using .../sysvinit-utils_2.87dsf-4ubuntu19_i386.deb) ... Unpacking replacement sysvinit-utils ... Preparing to replace sysv-rc 2.87dsf-4ubuntu18 (using .../sysv-rc_2.87dsf-4ubuntu19_all.deb) ... Unpacking replacement sysv-rc ... Preparing to replace mount 2.17.2-0ubuntu1 (using .../mount_2.17.2-3.3ubuntu1_i386.deb) ... Unpacking replacement mount ... Setting up mount (2.17.2-3.3ubuntu1) ... (Reading database ... 14389 files and directories currently installed.) Preparing to replace initscripts 2.87dsf-4ubuntu18 (using .../initscripts_2.87dsf-4ubuntu19_i386.deb) ... Unpacking replacement initscripts ... Preparing to replace hostname 3.04ubuntu1 (using .../hostname_3.05ubuntu1_i386.deb) ... Unpacking replacement hostname ... Setting up hostname (3.05ubuntu1) ... (Reading database ... 14389 files and directories currently installed.) Preparing to replace perl-modules 5.10.1-15ubuntu2 (using .../perl-modules_5.10.1-16ubuntu1_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace bzip2 1.0.5-4ubuntu1 (using .../bzip2_1.0.5-6_i386.deb) ... Unpacking replacement bzip2 ... Preparing to replace libbz2-1.0 1.0.5-4ubuntu1 (using .../libbz2-1.0_1.0.5-6_i386.deb) ... Unpacking replacement libbz2-1.0 ... Setting up libbz2-1.0 (1.0.5-6) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14388 files and directories currently installed.) Preparing to replace libdb4.8 4.8.30-2 (using .../libdb4.8_4.8.30-2ubuntu1_i386.deb) ... Unpacking replacement libdb4.8 ... Setting up libdb4.8 (4.8.30-2ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14388 files and directories currently installed.) Preparing to replace perl 5.10.1-15ubuntu2 (using .../perl_5.10.1-16ubuntu1_i386.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.10.1-15ubuntu2 (using .../perl-base_5.10.1-16ubuntu1_i386.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.10.1-16ubuntu1) ... (Reading database ... 14386 files and directories currently installed.) Preparing to replace sed 4.2.1-7 (using .../archives/sed_4.2.1-8_i386.deb) ... Unpacking replacement sed ... Setting up sed (4.2.1-8) ... (Reading database ... 14385 files and directories currently installed.) Preparing to replace tar 1.23-2 (using .../archives/tar_1.25-2_i386.deb) ... Unpacking replacement tar ... Setting up tar (1.25-2) ... (Reading database ... 14383 files and directories currently installed.) Preparing to replace util-linux 2.17.2-0ubuntu1 (using .../util-linux_2.17.2-3.3ubuntu1_i386.deb) ... Unpacking replacement util-linux ... Setting up util-linux (2.17.2-3.3ubuntu1) ... (Reading database ... 14381 files and directories currently installed.) Preparing to replace bsdutils 1:2.17.2-0ubuntu1 (using .../bsdutils_1%3a2.17.2-3.3ubuntu1_i386.deb) ... Unpacking replacement bsdutils ... Setting up bsdutils (1:2.17.2-3.3ubuntu1) ... (Reading database ... 14381 files and directories currently installed.) Preparing to replace libpam-modules 1.1.1-4ubuntu1 (using .../libpam-modules_1.1.1-4ubuntu2_i386.deb) ... Unpacking replacement libpam-modules ... Setting up libpam-modules (1.1.1-4ubuntu2) ... (Reading database ... 14381 files and directories currently installed.) Preparing to replace apt 0.8.7ubuntu1 (using .../apt_0.8.8ubuntu3_i386.deb) ... Unpacking replacement apt ... Setting up apt (0.8.8ubuntu3) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: Total number processed: 2 gpg: unchanged: 2 Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14382 files and directories currently installed.) Preparing to replace libuuid1 2.17.2-0ubuntu1 (using .../libuuid1_2.17.2-3.3ubuntu1_i386.deb) ... Unpacking replacement libuuid1 ... Setting up libuuid1 (2.17.2-3.3ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14381 files and directories currently installed.) Preparing to replace libblkid1 2.17.2-0ubuntu1 (using .../libblkid1_2.17.2-3.3ubuntu1_i386.deb) ... Unpacking replacement libblkid1 ... Setting up libblkid1 (2.17.2-3.3ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14380 files and directories currently installed.) Preparing to replace liblzma2 4.999.9beta+20100810-1 (using .../liblzma2_5.0.0-2_i386.deb) ... Unpacking replacement liblzma2 ... Setting up liblzma2 (5.0.0-2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14380 files and directories currently installed.) Preparing to replace libpam-runtime 1.1.1-4ubuntu1 (using .../libpam-runtime_1.1.1-4ubuntu2_all.deb) ... Unpacking replacement libpam-runtime ... Setting up libpam-runtime (1.1.1-4ubuntu2) ... (Reading database ... 14380 files and directories currently installed.) Preparing to replace libpam0g 1.1.1-4ubuntu1 (using .../libpam0g_1.1.1-4ubuntu2_i386.deb) ... Unpacking replacement libpam0g ... Setting up libpam0g (1.1.1-4ubuntu2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14380 files and directories currently installed.) Preparing to replace xz-utils 4.999.9beta+20100810-1 (using .../xz-utils_5.0.0-2_i386.deb) ... Unpacking replacement xz-utils ... Setting up xz-utils (5.0.0-2) ... (Reading database ... 14380 files and directories currently installed.) Preparing to replace netbase 4.35ubuntu3 (using .../netbase_4.43ubuntu1_all.deb) ... Unpacking replacement netbase ... Preparing to replace busybox-initramfs 1:1.17.1-4ubuntu1 (using .../busybox-initramfs_1%3a1.17.1-7ubuntu2_i386.deb) ... Unpacking replacement busybox-initramfs ... Preparing to replace cpio 2.11-4ubuntu1 (using .../cpio_2.11-5ubuntu1_i386.deb) ... Unpacking replacement cpio ... Preparing to replace libdrm2 2.4.21-1ubuntu2.1 (using .../libdrm2_2.4.22-2ubuntu1_i386.deb) ... Unpacking replacement libdrm2 ... Preparing to replace libdrm-intel1 2.4.21-1ubuntu2.1 (using .../libdrm-intel1_2.4.22-2ubuntu1_i386.deb) ... Unpacking replacement libdrm-intel1 ... Preparing to replace libdrm-nouveau1 2.4.21-1ubuntu2.1 (using .../libdrm-nouveau1_2.4.22-2ubuntu1_i386.deb) ... Unpacking replacement libdrm-nouveau1 ... Preparing to replace libdrm-radeon1 2.4.21-1ubuntu2.1 (using .../libdrm-radeon1_2.4.22-2ubuntu1_i386.deb) ... Unpacking replacement libdrm-radeon1 ... Preparing to replace libglib2.0-0 2.27.0-1ubuntu1 (using .../libglib2.0-0_2.27.3-0ubuntu1_i386.deb) ... Unpacking replacement libglib2.0-0 ... Preparing to replace procps 1:3.2.8-9ubuntu3 (using .../procps_1%3a3.2.8-9ubuntu5_i386.deb) ... Unpacking replacement procps ... Preparing to replace udev 163-1 (using .../archives/udev_164-3_i386.deb) ... Adding 'local diversion of /sbin/udevadm to /sbin/udevadm.upgrade' Unpacking replacement udev ... Preparing to replace plymouth 0.8.2-2ubuntu5 (using .../plymouth_0.8.2-2ubuntu5.1_i386.deb) ... Unpacking replacement plymouth ... Preparing to replace libplymouth2 0.8.2-2ubuntu5 (using .../libplymouth2_0.8.2-2ubuntu5.1_i386.deb) ... Unpacking replacement libplymouth2 ... Preparing to replace libudev0 163-1 (using .../libudev0_164-3_i386.deb) ... Unpacking replacement libudev0 ... Preparing to replace apt-transport-https 0.8.7ubuntu1 (using .../apt-transport-https_0.8.8ubuntu3_i386.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace cpp 4:4.5.1-1ubuntu2 (using .../cpp_4%3a4.5.1-1ubuntu3_i386.deb) ... Unpacking replacement cpp ... Preparing to replace libk5crypto3 1.8.1+dfsg-5ubuntu0.1 (using .../libk5crypto3_1.8.3+dfsg-2_i386.deb) ... Unpacking replacement libk5crypto3 ... Preparing to replace libgssapi-krb5-2 1.8.1+dfsg-5ubuntu0.1 (using .../libgssapi-krb5-2_1.8.3+dfsg-2_i386.deb) ... Unpacking replacement libgssapi-krb5-2 ... Preparing to replace libkrb5-3 1.8.1+dfsg-5ubuntu0.1 (using .../libkrb5-3_1.8.3+dfsg-2_i386.deb) ... Unpacking replacement libkrb5-3 ... Preparing to replace libkrb5support0 1.8.1+dfsg-5ubuntu0.1 (using .../libkrb5support0_1.8.3+dfsg-2_i386.deb) ... Unpacking replacement libkrb5support0 ... Preparing to replace libldap-2.4-2 2.4.23-0ubuntu3.2 (using .../libldap-2.4-2_2.4.23-6ubuntu2_i386.deb) ... Unpacking replacement libldap-2.4-2 ... Preparing to replace manpages 3.24-1ubuntu1 (using .../manpages_3.27-1ubuntu1_all.deb) ... Unpacking replacement manpages ... Selecting previously deselected package advancecomp. Unpacking advancecomp (from .../advancecomp_1.15-1_i386.deb) ... Preparing to replace gcc 4:4.5.1-1ubuntu2 (using .../gcc_4%3a4.5.1-1ubuntu3_i386.deb) ... Removing old gcc doc directory. Unpacking replacement gcc ... Preparing to replace g++ 4:4.5.1-1ubuntu2 (using .../g++_4%3a4.5.1-1ubuntu3_i386.deb) ... Unpacking replacement g++ ... Preparing to replace dpkg-dev 1.15.8.5ubuntu1 (using .../dpkg-dev_1.15.8.5ubuntu2_all.deb) ... Unpacking replacement dpkg-dev ... Preparing to replace libdpkg-perl 1.15.8.5ubuntu1 (using .../libdpkg-perl_1.15.8.5ubuntu2_all.deb) ... Unpacking replacement libdpkg-perl ... Preparing to replace patch 2.6-2ubuntu1 (using .../archives/patch_2.6-3_i386.deb) ... Unpacking replacement patch ... Preparing to replace build-essential 11.5 (using .../build-essential_11.5ubuntu1_i386.deb) ... Unpacking replacement build-essential ... Preparing to replace g++-4.4 4.4.5-2ubuntu1 (using .../g++-4.4_4.4.5-7ubuntu1_i386.deb) ... Unpacking replacement g++-4.4 ... Preparing to replace libstdc++6-4.4-dev 4.4.5-2ubuntu1 (using .../libstdc++6-4.4-dev_4.4.5-7ubuntu1_i386.deb) ... Unpacking replacement libstdc++6-4.4-dev ... Preparing to replace gcc-4.4 4.4.5-2ubuntu1 (using .../gcc-4.4_4.4.5-7ubuntu1_i386.deb) ... Unpacking replacement gcc-4.4 ... Preparing to replace cpp-4.4 4.4.5-2ubuntu1 (using .../cpp-4.4_4.4.5-7ubuntu1_i386.deb) ... Unpacking replacement cpp-4.4 ... Preparing to replace gcc-4.4-base 4.4.5-2ubuntu1 (using .../gcc-4.4-base_4.4.5-7ubuntu1_i386.deb) ... Unpacking replacement gcc-4.4-base ... Preparing to replace manpages-dev 3.24-1ubuntu1 (using .../manpages-dev_3.27-1ubuntu1_all.deb) ... Unpacking replacement manpages-dev ... Selecting previously deselected package optipng. Unpacking optipng (from .../optipng_0.6.4-1_i386.deb) ... Preparing to replace pkgbinarymangler 77 (using .../pkgbinarymangler_84_all.deb) ... Unpacking replacement pkgbinarymangler ... Setting up libc-dev-bin (2.12.1-0ubuntu9) ... Setting up linux-libc-dev (2.6.37-5.13) ... Setting up libc6-dev (2.12.1-0ubuntu9) ... Setting up libgomp1 (4.5.1-10ubuntu1) ... Setting up cpp-4.5 (4.5.1-10ubuntu1) ... Setting up binutils (2.20.90.20101105-0ubuntu1) ... Setting up gcc-4.5 (4.5.1-10ubuntu1) ... Setting up sysvinit-utils (2.87dsf-4ubuntu19) ... Setting up sysv-rc (2.87dsf-4ubuntu19) ... Setting up initscripts (2.87dsf-4ubuntu19) ... Setting up bzip2 (1.0.5-6) ... Setting up netbase (4.43ubuntu1) ... Installing new version of config file /etc/protocols ... Installing new version of config file /etc/init.d/networking ... Installing new version of config file /etc/services ... Setting up busybox-initramfs (1:1.17.1-7ubuntu2) ... Setting up cpio (2.11-5ubuntu1) ... Setting up libdrm2 (2.4.22-2ubuntu1) ... Setting up libdrm-intel1 (2.4.22-2ubuntu1) ... Setting up libdrm-nouveau1 (2.4.22-2ubuntu1) ... Setting up libdrm-radeon1 (2.4.22-2ubuntu1) ... Setting up libglib2.0-0 (2.27.3-0ubuntu1) ... Setting up procps (1:3.2.8-9ubuntu5) ... Installing new version of config file /etc/sysctl.d/README ... Setting up udev (164-3) ... Removing 'local diversion of /sbin/udevadm to /sbin/udevadm.upgrade' update-initramfs: deferring update (trigger activated) Setting up libplymouth2 (0.8.2-2ubuntu5.1) ... Setting up plymouth (0.8.2-2ubuntu5.1) ... update-initramfs: deferring update (trigger activated) Setting up libudev0 (164-3) ... Setting up apt-transport-https (0.8.8ubuntu3) ... Setting up cpp (4:4.5.1-1ubuntu3) ... Setting up libkrb5support0 (1.8.3+dfsg-2) ... Setting up libk5crypto3 (1.8.3+dfsg-2) ... Setting up libkrb5-3 (1.8.3+dfsg-2) ... Setting up libgssapi-krb5-2 (1.8.3+dfsg-2) ... Setting up libldap-2.4-2 (2.4.23-6ubuntu2) ... Setting up manpages (3.27-1ubuntu1) ... Setting up advancecomp (1.15-1) ... Setting up gcc (4:4.5.1-1ubuntu3) ... Setting up patch (2.6-3) ... Setting up gcc-4.4-base (4.4.5-7ubuntu1) ... Setting up cpp-4.4 (4.4.5-7ubuntu1) ... Setting up gcc-4.4 (4.4.5-7ubuntu1) ... Setting up manpages-dev (3.27-1ubuntu1) ... Setting up optipng (0.6.4-1) ... Setting up pkgbinarymangler (84) ... Setting up perl-modules (5.10.1-16ubuntu1) ... Setting up g++-4.4 (4.4.5-7ubuntu1) ... Setting up g++-4.5 (4.5.1-10ubuntu1) ... Setting up libstdc++6-4.5-dev (4.5.1-10ubuntu1) ... Setting up perl (5.10.1-16ubuntu1) ... Setting up g++ (4:4.5.1-1ubuntu3) ... Setting up libdpkg-perl (1.15.8.5ubuntu2) ... Setting up dpkg-dev (1.15.8.5ubuntu2) ... Setting up build-essential (11.5ubuntu1) ... Setting up libstdc++6-4.4-dev (4.4.5-7ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '40d673dea0730cd127b036b1be14a480ebd7b350', 'i386', 'natty', '--nolog', '--batch', '--archive=ubuntu', '--dist=natty', '-A', '--purpose=PRIMARY', '--architecture=i386', '--comp=universe', 'primer3_2.2.3-1.dsc'] Initiating build 40d673dea0730cd127b036b1be14a480ebd7b350 with 2 processor cores. Automatic build of primer3_2.2.3-1 on rothera by sbuild/i386 1.170.5 Build started at 20101118-1135 ****************************************************************************** primer3_2.2.3-1.dsc exists in cwd sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 7), cdbs sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) Checking for already installed source dependencies... debhelper: missing cdbs: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper cdbs Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils fdupes file gettext gettext-base groff-base html2text intltool intltool-debian libcroco3 libexpat1 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libmagic1 libsqlite3-0 libunistring0 liburi-perl libwww-perl libxml-parser-perl libxml2 m4 man-db mime-support po-debconf python python-scour python2.6 Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts doc-base dh-make gettext-doc groff libdata-dump-perl libcrypt-ssleay-perl libio-socket-ssl-perl less www-browser libmail-box-perl python-doc python-tk python-profiler python2.6-doc python2.6-profiler Recommended packages: curl wget lynx libmailtools-perl libhtml-format-perl xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils cdbs debhelper fdupes file gettext gettext-base groff-base html2text intltool intltool-debian libcroco3 libexpat1 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libmagic1 libsqlite3-0 libunistring0 liburi-perl libwww-perl libxml-parser-perl libxml2 m4 man-db mime-support po-debconf python python-scour python2.6 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 12.6 MB of archives. After this operation, 40.2 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libmagic1 file libexpat1 libsqlite3-0 mime-support python2.6 python bsdmainutils gettext-base groff-base liburi-perl libhtml-tagset-perl libhtml-parser-perl libhtml-tree-perl libwww-perl libxml-parser-perl libxml2 man-db m4 autoconf autotools-dev automake html2text libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper fdupes intltool python-scour cdbs Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ natty/main libmagic1 i386 5.04-5ubuntu1 [232 kB] Get:2 http://ftpmaster.internal/ubuntu/ natty/main file i386 5.04-5ubuntu1 [49.4 kB] Get:3 http://ftpmaster.internal/ubuntu/ natty/main libexpat1 i386 2.0.1-7ubuntu1 [139 kB] Get:4 http://ftpmaster.internal/ubuntu/ natty/main libsqlite3-0 i386 3.7.3-1 [375 kB] Get:5 http://ftpmaster.internal/ubuntu/ natty/main mime-support all 3.51-1ubuntu1 [30.7 kB] Get:6 http://ftpmaster.internal/ubuntu/ natty/main python2.6 i386 2.6.6-6ubuntu1 [2384 kB] Get:7 http://ftpmaster.internal/ubuntu/ natty/main python all 2.6.6-5ubuntu1 [172 kB] Get:8 http://ftpmaster.internal/ubuntu/ natty/main bsdmainutils i386 8.0.11ubuntu1 [197 kB] Get:9 http://ftpmaster.internal/ubuntu/ natty/main gettext-base i386 0.18.1.1-1ubuntu2 [77.2 kB] Get:10 http://ftpmaster.internal/ubuntu/ natty/main groff-base i386 1.20.1-10 [1090 kB] Get:11 http://ftpmaster.internal/ubuntu/ natty/main liburi-perl all 1.56-1 [90.6 kB] Get:12 http://ftpmaster.internal/ubuntu/ natty/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:13 http://ftpmaster.internal/ubuntu/ natty/main libhtml-parser-perl i386 3.68-1 [100 kB] Get:14 http://ftpmaster.internal/ubuntu/ natty/main libhtml-tree-perl all 4.1-1 [206 kB] Get:15 http://ftpmaster.internal/ubuntu/ natty/main libwww-perl all 5.837-1 [363 kB] Get:16 http://ftpmaster.internal/ubuntu/ natty/main libxml-parser-perl i386 2.36-1.1build3 [323 kB] Get:17 http://ftpmaster.internal/ubuntu/ natty/main libxml2 i386 2.7.8.dfsg-1 [605 kB] Get:18 http://ftpmaster.internal/ubuntu/ natty/main man-db i386 2.5.7-6 [1006 kB] Get:19 http://ftpmaster.internal/ubuntu/ natty/main m4 i386 1.4.14-3 [276 kB] Get:20 http://ftpmaster.internal/ubuntu/ natty/main autoconf all 2.67-2ubuntu1 [569 kB] Get:21 http://ftpmaster.internal/ubuntu/ natty/main autotools-dev all 20100122.1 [70.7 kB] Get:22 http://ftpmaster.internal/ubuntu/ natty/main automake all 1:1.11.1-1 [608 kB] Get:23 http://ftpmaster.internal/ubuntu/ natty/main html2text i386 1.3.2a-15 [101 kB] Get:24 http://ftpmaster.internal/ubuntu/ natty/main libcroco3 i386 0.6.2-1 [92.5 kB] Get:25 http://ftpmaster.internal/ubuntu/ natty/main libunistring0 i386 0.9.3-3 [423 kB] Get:26 http://ftpmaster.internal/ubuntu/ natty/main gettext i386 0.18.1.1-1ubuntu2 [1205 kB] Get:27 http://ftpmaster.internal/ubuntu/ natty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:28 http://ftpmaster.internal/ubuntu/ natty/main po-debconf all 1.0.16+nmu1 [212 kB] Get:29 http://ftpmaster.internal/ubuntu/ natty/main debhelper all 8.0.0ubuntu1 [460 kB] Get:30 http://ftpmaster.internal/ubuntu/ natty/main fdupes i386 1.50-PR2-3 [20.0 kB] Get:31 http://ftpmaster.internal/ubuntu/ natty/main intltool all 0.41.1-1 [103 kB] Get:32 http://ftpmaster.internal/ubuntu/ natty/main python-scour all 0.25+bzr194-0ubuntu3 [37.1 kB] Get:33 http://ftpmaster.internal/ubuntu/ natty/main cdbs all 0.4.89ubuntu5 [958 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.6 MB in 0s (16.6 MB/s) Selecting previously deselected package libmagic1. (Reading database ... 14427 files and directories currently installed.) Unpacking libmagic1 (from .../libmagic1_5.04-5ubuntu1_i386.deb) ... Selecting previously deselected package file. Unpacking file (from .../file_5.04-5ubuntu1_i386.deb) ... Selecting previously deselected package libexpat1. Unpacking libexpat1 (from .../libexpat1_2.0.1-7ubuntu1_i386.deb) ... Selecting previously deselected package libsqlite3-0. Unpacking libsqlite3-0 (from .../libsqlite3-0_3.7.3-1_i386.deb) ... Selecting previously deselected package mime-support. Unpacking mime-support (from .../mime-support_3.51-1ubuntu1_all.deb) ... Selecting previously deselected package python2.6. Unpacking python2.6 (from .../python2.6_2.6.6-6ubuntu1_i386.deb) ... Selecting previously deselected package python. Unpacking python (from .../python_2.6.6-5ubuntu1_all.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.0.11ubuntu1_i386.deb) ... Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-1ubuntu2_i386.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.20.1-10_i386.deb) ... Selecting previously deselected package liburi-perl. Unpacking liburi-perl (from .../liburi-perl_1.56-1_all.deb) ... Selecting previously deselected package libhtml-tagset-perl. Unpacking libhtml-tagset-perl (from .../libhtml-tagset-perl_3.20-2_all.deb) ... Selecting previously deselected package libhtml-parser-perl. Unpacking libhtml-parser-perl (from .../libhtml-parser-perl_3.68-1_i386.deb) ... Selecting previously deselected package libhtml-tree-perl. Unpacking libhtml-tree-perl (from .../libhtml-tree-perl_4.1-1_all.deb) ... Selecting previously deselected package libwww-perl. Unpacking libwww-perl (from .../libwww-perl_5.837-1_all.deb) ... Selecting previously deselected package libxml-parser-perl. Unpacking libxml-parser-perl (from .../libxml-parser-perl_2.36-1.1build3_i386.deb) ... Selecting previously deselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-1_i386.deb) ... Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.5.7-6_i386.deb) ... Selecting previously deselected package m4. Unpacking m4 (from .../archives/m4_1.4.14-3_i386.deb) ... Selecting previously deselected package autoconf. Unpacking autoconf (from .../autoconf_2.67-2ubuntu1_all.deb) ... Selecting previously deselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20100122.1_all.deb) ... Selecting previously deselected package automake. Unpacking automake (from .../automake_1%3a1.11.1-1_all.deb) ... Selecting previously deselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_i386.deb) ... Selecting previously deselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-1_i386.deb) ... Selecting previously deselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-3_i386.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-1ubuntu2_i386.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_8.0.0ubuntu1_all.deb) ... Selecting previously deselected package fdupes. Unpacking fdupes (from .../fdupes_1.50-PR2-3_i386.deb) ... Selecting previously deselected package intltool. Unpacking intltool (from .../intltool_0.41.1-1_all.deb) ... Selecting previously deselected package python-scour. Unpacking python-scour (from .../python-scour_0.25+bzr194-0ubuntu3_all.deb) ... Selecting previously deselected package cdbs. Unpacking cdbs (from .../cdbs_0.4.89ubuntu5_all.deb) ... Setting up libmagic1 (5.04-5ubuntu1) ... Setting up file (5.04-5ubuntu1) ... Setting up libexpat1 (2.0.1-7ubuntu1) ... Setting up libsqlite3-0 (3.7.3-1) ... Setting up mime-support (3.51-1ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up python2.6 (2.6.6-6ubuntu1) ... Setting up python (2.6.6-5ubuntu1) ... Setting up bsdmainutils (8.0.11ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-1ubuntu2) ... Setting up groff-base (1.20.1-10) ... Setting up liburi-perl (1.56-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.68-1) ... Setting up libhtml-tree-perl (4.1-1) ... Setting up libwww-perl (5.837-1) ... Setting up libxml-parser-perl (2.36-1.1build3) ... Setting up libxml2 (2.7.8.dfsg-1) ... Setting up man-db (2.5.7-6) ... Building database of manual pages ... Setting up m4 (1.4.14-3) ... Setting up autoconf (2.67-2ubuntu1) ... Setting up autotools-dev (20100122.1) ... Setting up automake (1:1.11.1-1) ... update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode. Setting up html2text (1.3.2a-15) ... Setting up libcroco3 (0.6.2-1) ... Setting up libunistring0 (0.9.3-3) ... Setting up gettext (0.18.1.1-1ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1) ... Setting up debhelper (8.0.0ubuntu1) ... Setting up fdupes (1.50-PR2-3) ... Setting up intltool (0.41.1-1) ... Setting up python-scour (0.25+bzr194-0ubuntu3) ... Setting up cdbs (0.4.89ubuntu5) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.12.1-0ubuntu9 make_3.81-8 dpkg-dev_1.15.8.5ubuntu2 gcc-4.5_4.5.1-10ubuntu1 g++-4.5_4.5.1-10ubuntu1 binutils_2.20.90.20101105-0ubuntu1 libstdc++6-4.5-dev_4.5.1-10ubuntu1 libstdc++6_4.5.1-10ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Wed Nov 17 14:13:11 2010 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./primer3_2.2.3-1.dsc dpkg-source: info: extracting primer3 in primer3-2.2.3 dpkg-source: info: unpacking primer3_2.2.3.orig.tar.gz dpkg-source: info: unpacking primer3_2.2.3-1.debian.tar.gz dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions dpkg-buildpackage: source package primer3 dpkg-buildpackage: source version 2.2.3-1 dpkg-source --before-build primer3-2.2.3 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean test -x debian/rules dh_testroot rm -f debian/stamp-makefile-build debian/stamp-makefile-install /usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="-Wl,-Bsymbolic-functions" -k -C src clean make[1]: Entering directory `/build/buildd/primer3-2.2.3/src' rm -f *.o primer3_core ntdpal ntthal oligotm long_seq_tm_test *~ libprimer3.a libdpal.a libthal.a liboligotm.a libprimer3.so.1.0.0 libdpal.a.so.1.0.0 libthal.a.so.1.0.0 liboligotm.so.1.2.0 example.for example.rev example.int core ../*~ cd ../test/; make clean make[2]: Entering directory `/build/buildd/primer3-2.2.3/test' echo; echo; echo 'CLEAN UP TEST DIRECTORIES'; echo; echo; CLEAN UP TEST DIRECTORIES rm -rf primer_list_tmp/* rm -rf primer1_list_tmp/* rm -f primer_global_err/*.tmp primer_global_err/*.tmp2 primer_global_err/*.bak rm -f *.tmp *.bak *.tmp.err *~ rm -f hyb_probe_only.for hyb_probe_only.int rm -f right_only.for right_only.rev left_only.for rm -f pcr_primers_and_io.int pcr_primers_and_io.rev pcr_primers_and_io.for rm -f pcr_primers.rev pcr_primers.for rm -f syntax[0-1][0-9].for syntax[0-1][0-9].int syntax[0-1][0-9].rev rm -f oligotm.*.valg # valgrind output from oligotm_test.pl --valgrind rm -f ntdpal.*.valg # valgrind output from dpal_test.pl --valgrind rm -f ntthal.*.valg # valgrind output from thal_test.pl --valgrind rm -f oligotm.*.valg.* # valgrind output from oligotm_test.pl --valgrind rm -f ntdpal.*.valg.* # valgrind output from dpal_test.pl --valgrind rm -f ntthal.*.valg.* # valgrind output from thal_test.pl --valgrind rm -f *.vg */*.vg # valgrind output from p3test{,z}.pl --valgrind rm -f *.vg.core.* # core files from crashed valgrind test rm -f ./core # in case we crashed and left a core file cd io_version_3; make clean make[3]: Entering directory `/build/buildd/primer3-2.2.3/test/io_version_3' echo; echo; echo 'CLEAN UP IO VERSION 3 TEST DIRECTORY'; echo; CLEAN UP IO VERSION 3 TEST DIRECTORY rm -rf primer_list_tmp/* rm -rf primer1_list_tmp/* rm -f primer_global_err/*.tmp primer_global_err/*.tmp2 primer_global_err/*.bak rm -f *.tmp *.bak *~ rm -f hyb_probe_only.for hyb_probe_only.int rm -f right_only.for right_only.rev left_only.for rm -f pcr_primers_and_io.int pcr_primers_and_io.rev pcr_primers_and_io.for rm -f pcr_primers.rev pcr_primers.for rm -f syntax[0-1][0-9].for syntax[0-1][0-9].int syntax[0-1][0-9].rev rm -f oligotm.*.valg # valgrind output from oligotm_test.pl --valgrind rm -f ntdpal.*.valg # valgrind output from dpal_test.pl --valgrind rm -f *.vg */*.vg # valgrind output from p3test{,z}.pl --valgrind rm -f *.vg.core.* # core files from crashed valgrind test rm -f ./core # in case we crashed and left a core file rm -f *.for rm -f *.rev rm -f *.int make[3]: Leaving directory `/build/buildd/primer3-2.2.3/test/io_version_3' make[2]: Leaving directory `/build/buildd/primer3-2.2.3/test' make[1]: Leaving directory `/build/buildd/primer3-2.2.3/src' rm -f debian/stamp-makefile-check dh_clean /usr/bin/make -C test clean make[1]: Entering directory `/build/buildd/primer3-2.2.3/test' echo; echo; echo 'CLEAN UP TEST DIRECTORIES'; echo; echo; CLEAN UP TEST DIRECTORIES rm -rf primer_list_tmp/* rm -rf primer1_list_tmp/* rm -f primer_global_err/*.tmp primer_global_err/*.tmp2 primer_global_err/*.bak rm -f *.tmp *.bak *.tmp.err *~ rm -f hyb_probe_only.for hyb_probe_only.int rm -f right_only.for right_only.rev left_only.for rm -f pcr_primers_and_io.int pcr_primers_and_io.rev pcr_primers_and_io.for rm -f pcr_primers.rev pcr_primers.for rm -f syntax[0-1][0-9].for syntax[0-1][0-9].int syntax[0-1][0-9].rev rm -f oligotm.*.valg # valgrind output from oligotm_test.pl --valgrind rm -f ntdpal.*.valg # valgrind output from dpal_test.pl --valgrind rm -f ntthal.*.valg # valgrind output from thal_test.pl --valgrind rm -f oligotm.*.valg.* # valgrind output from oligotm_test.pl --valgrind rm -f ntdpal.*.valg.* # valgrind output from dpal_test.pl --valgrind rm -f ntthal.*.valg.* # valgrind output from thal_test.pl --valgrind rm -f *.vg */*.vg # valgrind output from p3test{,z}.pl --valgrind rm -f *.vg.core.* # core files from crashed valgrind test rm -f ./core # in case we crashed and left a core file cd io_version_3; make clean make[2]: Entering directory `/build/buildd/primer3-2.2.3/test/io_version_3' echo; echo; echo 'CLEAN UP IO VERSION 3 TEST DIRECTORY'; echo; CLEAN UP IO VERSION 3 TEST DIRECTORY rm -rf primer_list_tmp/* rm -rf primer1_list_tmp/* rm -f primer_global_err/*.tmp primer_global_err/*.tmp2 primer_global_err/*.bak rm -f *.tmp *.bak *~ rm -f hyb_probe_only.for hyb_probe_only.int rm -f right_only.for right_only.rev left_only.for rm -f pcr_primers_and_io.int pcr_primers_and_io.rev pcr_primers_and_io.for rm -f pcr_primers.rev pcr_primers.for rm -f syntax[0-1][0-9].for syntax[0-1][0-9].int syntax[0-1][0-9].rev rm -f oligotm.*.valg # valgrind output from oligotm_test.pl --valgrind rm -f ntdpal.*.valg # valgrind output from dpal_test.pl --valgrind rm -f *.vg */*.vg # valgrind output from p3test{,z}.pl --valgrind rm -f *.vg.core.* # core files from crashed valgrind test rm -f ./core # in case we crashed and left a core file rm -f *.for rm -f *.rev rm -f *.int make[2]: Leaving directory `/build/buildd/primer3-2.2.3/test/io_version_3' make[1]: Leaving directory `/build/buildd/primer3-2.2.3/test' debian/rules build test -x debian/rules mkdir -p "." /usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="-Wl,-Bsymbolic-functions" -C src all make[1]: Entering directory `/build/buildd/primer3-2.2.3/src' g++ -c -g -O2 -g -Wall -O2 primer3_boulder_main.c g++ -c -g -O2 -g -Wall -O2 -o format_output.o format_output.c g++ -c -g -O2 -g -Wall -O2 -o read_boulder.o read_boulder.c g++ -c -g -O2 -g -Wall -O2 -o print_boulder.o print_boulder.c g++ -c -g -O2 -g -Wall -O2 -Wno-deprecated -o libprimer3.o libprimer3.c g++ -c -g -O2 -g -Wall -O2 -o p3_seq_lib.o p3_seq_lib.c ar rv libprimer3.a libprimer3.o p3_seq_lib.o ar: creating libprimer3.a a - libprimer3.o a - p3_seq_lib.o ranlib libprimer3.a g++ -c -g -O2 -g -Wall -O2 -o dpal_primer.o dpal.c ar rv libdpal.a dpal_primer.o ar: creating libdpal.a a - dpal_primer.o ranlib libdpal.a g++ -c -g -O2 -g -Wall -O2 -ffloat-store -o thal_primer.o thal.c ar rv libthal.a thal_primer.o ar: creating libthal.a a - thal_primer.o ranlib libthal.a gcc -g -O2 -g -Wall -O2 -c -o oligotm.o oligotm.c ar rv liboligotm.a oligotm.o ar: creating liboligotm.a a - oligotm.o ranlib liboligotm.a g++ -Wl,-Bsymbolic-functions -o primer3_core primer3_boulder_main.o format_output.o read_boulder.o print_boulder.o libprimer3.a libdpal.a libthal.a liboligotm.a -lm g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -o ntdpal_main.o ntdpal_main.c g++ -c -g -O2 -g -Wall -O2 -o dpal.o dpal.c g++ -Wl,-Bsymbolic-functions -o ntdpal ntdpal_main.o dpal.o g++ -c -g -O2 -g -Wall -O2 -o thal_main.o thal_main.c g++ -c -g -O2 -g -Wall -O2 -ffloat-store -o thal.o thal.c g++ -Wl,-Bsymbolic-functions -o ntthal thal_main.o thal.o -lm g++ -g -O2 -g -Wall -O2 -o oligotm oligotm_main.c liboligotm.a -lm g++ -g -O2 -g -Wall -O2 -o long_seq_tm_test long_seq_tm_test_main.c oligotm.o -lm make[1]: Leaving directory `/build/buildd/primer3-2.2.3/src' touch debian/stamp-makefile-build /usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="-Wl,-Bsymbolic-functions" -C test test make[1]: Entering directory `/build/buildd/primer3-2.2.3/test' cd ../src; make make[2]: Entering directory `/build/buildd/primer3-2.2.3/src' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/primer3-2.2.3/src' echo; echo; echo 'TESTING command line arguments'; echo; perl cmdline_test.pl TESTING command line arguments Test 1... [OK] Test 2... [OK] Test 3... [OK] Test 4... [OK] Passed all tests - [OK] echo; echo; echo 'TESTING Tm CALCS'; echo; perl oligotm_test.pl ; TESTING Tm CALCS Tests nr 1-44: OK echo; echo; echo 'TESTING ALIGNMENT CALCS'; echo; perl dpal_test.pl ; TESTING ALIGNMENT CALCS Error handling of too-long sequence...OK Default implementations + alignment...[OK] Default implementations + NO alignment 1...[OK] Default implementations + NO alignment 2...[OK] Force _dpal_generic...[OK] Force _dpal_long_nopath_generic 1...[OK] Force _dpal_long_nopath_generic 2...[OK] Force long maxgap1 functions 1...[OK] Force long maxgap1 functions 2...[OK] echo; echo; echo 'TESTING THERMODYNAMICAL ALIGNMENT CALCS'; echo; perl thal_test.pl ; TESTING THERMODYNAMICAL ALIGNMENT CALCS Error handling of too-long sequence... 1.................................. OK 2................................... OK Default implementations + alignment...[OK] Default implementations + NO alignment 1...[OK] Default implementations + NO alignment 2...[OK] echo; echo; echo 'TESTING primer3_core'; echo; perl p3test.pl TESTING primer3_core p3test.pl: testing ../src/primer3_core START, Thu Nov 18 11:36:36 2010 testing fatal errors... ./primer_global_err/bad_divalent_dntp_conc_1 ./primer_global_err/bad_divalent_dntp_conc_2 ./primer_global_err/bad_divalent_dntp_conc_3 ./primer_global_err/bad_divalent_dntp_conc_4 ./primer_global_err/bad_dna_conc ./primer_global_err/bad_float_1 ./primer_global_err/bad_float_2 ./primer_global_err/bad_float_3 ./primer_global_err/bad_float_4 ./primer_global_err/bad_gc_1 ./primer_global_err/bad_gc_2 ./primer_global_err/bad_gc_3 ./primer_global_err/bad_gc_int_1 ./primer_global_err/bad_gc_int_2 ./primer_global_err/bad_gc_int_3 ./primer_global_err/bad_min_three_prime_distance ./primer_global_err/bad_num_ns ./primer_global_err/bad_num_ns_int ./primer_global_err/bad_product_sizes_1 ./primer_global_err/bad_product_sizes_2 ./primer_global_err/bad_product_sizes_3 ./primer_global_err/bad_product_sizes_4 ./primer_global_err/bad_salt_conc ./primer_global_err/bad_self_any ./primer_global_err/bad_self_any_int ./primer_global_err/bad_self_end ./primer_global_err/bad_self_end_int ./primer_global_err/empty_1 ./primer_global_err/empty_product_size ./primer_global_err/gc_clamp_min_size ./primer_global_err/incorrect_task ./primer_global_err/io_gc_content_obj_fn ./primer_global_err/io_obj_fn ./primer_global_err/junction_overlap_max_size ./primer_global_err/junction_overlap_min_size ./primer_global_err/max_min_tm ./primer_global_err/max_min_tm_int ./primer_global_err/max_opt_tm ./primer_global_err/max_opt_tm_int ./primer_global_err/MAX_PRIMER_LENGTH ./primer_global_err/max_size_limit_int ./primer_global_err/max_size_min_product ./primer_global_err/max_size_min_product_int ./primer_global_err/min_opt_tm ./primer_global_err/min_opt_tm_int ./primer_global_err/mishyb_obj_fn ./primer_global_err/mispr_obj_fn ./primer_global_err/no_equal ./primer_global_err/no_terminal_equal ./primer_global_err/opt_max_size ./primer_global_err/opt_max_size_int ./primer_global_err/opt_min_size ./primer_global_err/opt_min_size_int ./primer_global_err/pair_mispr ./primer_global_err/pr_gc_content_obj_fn ./primer_global_err/product_size_obj_fn ./primer_global_err/product_tm_obj_fn ./primer_global_err/repeat_lib_err ./primer_global_err/repeat_lib_err1 ./primer_global_err/repeat_lib_err2 ./primer_global_err/repeat_lib_err3 ./primer_global_err/repeat_lib_err4 ./primer_global_err/repeat_lib_err5 ./primer_global_err/repeat_lib_err6 ./primer_global_err/repeat_lib_int_err ./primer_global_err/repeat_lib_int_err1 ./primer_global_err/repeat_lib_int_err2 ./primer_global_err/repeat_lib_int_err3 ./primer_global_err/repeat_lib_int_err4 ./primer_global_err/repeat_lib_int_err5 ./primer_global_err/repeat_lib_int_err6 ./primer_global_err/seq_quality1 ./primer_global_err/seq_quality2 ./primer_global_err/seq_quality3 ./primer_global_err/seq_quality4 ./primer_global_err/too_many_product_sizes ./primer_global_err/zero_min_size ./primer_global_err/zero_num_return [OK] primer_boundary...[OK] primer_boundary1...[OK] primer_boundary_formatted...[OK] primer_boundary1_formatted...[OK] primer_internal...[OK] primer_internal1...[OK] primer_internal_formatted...[OK] primer_internal1_formatted...[OK] primer_ok_regions...[OK] primer_ok_regions_formatted...[OK] primer_ok_regions2...[OK] primer_tm_lc_masking...[OK] primer_tm_lc_masking_formatted...[OK] primer_start_codon...[OK] primer_task...[OK] primer_task_formatted...[OK] primer_renewed_tasks...[OK] primer_new_tasks...[OK] primer_new_tasks_formatted...[OK] primer_must_overlap_point...[OK] primer_overlap_junction...[OK] primer_all_settingsfiles...[OK] primer_high_tm_load_set...[OK] primer_high_gc_load_set...[OK] primer_gc_end...[OK] primer_check...[OK] primer_must_use...[OK] primer_must_use_formatted...[OK] primer_syntax...[OK] primer_end_pathology...[OK] primer_num_best...[OK] primer_quality_boundary...[OK] primer...[OK] primer_list_files...[OK] primer1...[OK] primer1_list_files...[OK] primer_mispriming...[OK] primer_mispriming_formatted...[OK] primer_mispriming_boundary1...[OK] primer_mispriming_boundary1_formatted...[OK] primer_mispriming_boundary2...[OK] primer_mispriming_boundary2_formatted...[OK] primer_mispriming_long_lib...[OK] primer_rat...[OK] primer_human...[OK] long_seq...[OK] primer_position_penalty...[OK] primer_position_penalty_formatted...[OK] p3-tmpl-mispriming...[OK] p3_3_prime_n...[OK] primer_three_prime_distance...[OK] primer_thermod_align...[OK] primer_thermod_align_formatted...[OK] primer_obj_fn...[OK] primer_lib_amb_codes... NOTE: this test takes _much_ longer than the others (10 to 20 minutes or more). starting primer_lib_amb_codes at Thu Nov 18 11:43:03 2010...[OK] Tests ran for 929 seconds. DONE Thu Nov 18 11:52:05 2010 Passed all tests - [OK] cd io_version_3; make test make[2]: Entering directory `/build/buildd/primer3-2.2.3/test/io_version_3' echo; echo; echo 'TESTING primer3_core, IO VERSION 3'; echo; perl p3test_io3.pl TESTING primer3_core, IO VERSION 3 p3test_io3.pl: testing ../../src/primer3_core START, Thu Nov 18 11:52:05 2010 testing fatal errors... ./primer_global_err/bad_divalent_dntp_conc_1 ./primer_global_err/bad_divalent_dntp_conc_2 ./primer_global_err/bad_divalent_dntp_conc_3 ./primer_global_err/bad_divalent_dntp_conc_4 ./primer_global_err/bad_dna_conc ./primer_global_err/bad_float_1 ./primer_global_err/bad_float_2 ./primer_global_err/bad_float_3 ./primer_global_err/bad_float_4 ./primer_global_err/bad_gc_1 ./primer_global_err/bad_gc_2 ./primer_global_err/bad_gc_3 ./primer_global_err/bad_gc_int_1 ./primer_global_err/bad_gc_int_2 ./primer_global_err/bad_gc_int_3 ./primer_global_err/bad_num_ns ./primer_global_err/bad_num_ns_int ./primer_global_err/bad_product_sizes_1 ./primer_global_err/bad_product_sizes_2 ./primer_global_err/bad_product_sizes_3 ./primer_global_err/bad_product_sizes_4 ./primer_global_err/bad_salt_conc ./primer_global_err/bad_self_any ./primer_global_err/bad_self_any_int ./primer_global_err/bad_self_end ./primer_global_err/bad_self_end_int ./primer_global_err/empty_1 ./primer_global_err/empty_product_size ./primer_global_err/gc_clamp_min_size ./primer_global_err/incorrect_task ./primer_global_err/io_gc_content_obj_fn ./primer_global_err/io_obj_fn ./primer_global_err/max_min_tm ./primer_global_err/max_min_tm_int ./primer_global_err/max_opt_tm ./primer_global_err/max_opt_tm_int ./primer_global_err/MAX_PRIMER_LENGTH ./primer_global_err/max_size_min_product ./primer_global_err/min_opt_tm ./primer_global_err/mishyb_obj_fn ./primer_global_err/mispr_obj_fn ./primer_global_err/no_terminal_equal ./primer_global_err/opt_max_size ./primer_global_err/opt_min_size ./primer_global_err/pair_mispr ./primer_global_err/pr_gc_content_obj_fn ./primer_global_err/product_size_obj_fn ./primer_global_err/product_tm_obj_fn ./primer_global_err/repeat_lib_err ./primer_global_err/repeat_lib_err1 ./primer_global_err/repeat_lib_err2 ./primer_global_err/repeat_lib_err3 ./primer_global_err/repeat_lib_err5 ./primer_global_err/repeat_lib_err6 ./primer_global_err/repeat_lib_int_err ./primer_global_err/repeat_lib_int_err1 ./primer_global_err/repeat_lib_int_err2 ./primer_global_err/repeat_lib_int_err3 ./primer_global_err/repeat_lib_int_err5 ./primer_global_err/repeat_lib_int_err6 ./primer_global_err/seq_quality1 ./primer_global_err/seq_quality2 ./primer_global_err/too_many_product_sizes ./primer_global_err/zero_num_return [OK] primer_boundary...[OK] primer_boundary_formatted...[OK] primer_boundary1...[OK] primer_boundary1_formatted...[OK] primer_internal...[OK] primer_internal1...[OK] primer_internal_formatted...[OK] primer_internal1_formatted...[OK] primer_tm_lc_masking...[OK] primer_tm_lc_masking_formatted...[OK] primer_start_codon...[OK] primer_task...[OK] primer_task_formatted...[OK] primer_check...[OK] primer_must_use...[OK] primer_must_use_formatted...[OK] primer_syntax...[OK] primer_end_pathology...[OK] primer_num_best...[OK] primer_quality_boundary...[OK] primer...[OK] primer_list_files...[OK] primer1...[OK] primer1_list_files...[OK] primer_mispriming...[OK] primer_mispriming_formatted...[OK] primer_mispriming_boundary1...[OK] primer_mispriming_boundary1_formatted...[OK] primer_mispriming_boundary2...[OK] primer_mispriming_boundary2_formatted...[OK] primer_mispriming_long_lib...[OK] primer_rat...[OK] primer_human...[OK] long_seq...[OK] primer_position_penalty...[OK] primer_position_penalty_formatted...[OK] p3-tmpl-mispriming...[OK] primer_obj_fn...[OK] primer_lib_amb_codes... NOTE: this test takes _much_ longer than the others (10 to 20 minutes or more). starting primer_lib_amb_codes at Thu Nov 18 11:52:27 2010...[OK] Tests ran for 459 seconds. DONE Thu Nov 18 11:59:44 2010 Passed all tests - [OK] make[2]: Leaving directory `/build/buildd/primer3-2.2.3/test/io_version_3' make[1]: Leaving directory `/build/buildd/primer3-2.2.3/test' touch debian/stamp-makefile-check /usr/bin/fakeroot debian/rules binary test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "." DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target Adding cdbs dependencies to debian/primer3.substvars dh_installdirs -pprimer3 dh_installdocs -pprimer3 dh_installexamples -pprimer3 dh_installman -pprimer3 dh_installinfo -pprimer3 dh_installmenu -pprimer3 dh_installcron -pprimer3 dh_installinit -pprimer3 Duplicate specification "O=s" for option "O" dh_installdebconf -pprimer3 dh_installemacsen -pprimer3 dh_installcatalogs -pprimer3 dh_installpam -pprimer3 dh_installlogrotate -pprimer3 dh_installlogcheck -pprimer3 dh_installchangelogs -pprimer3 dh_installudev -pprimer3 dh_lintian -pprimer3 dh_install -pprimer3 dh_link -pprimer3 dh_installmime -pprimer3 dh_strip -pprimer3 dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: primer3 dh_strip debug symbol extraction: packages to act on: primer3 dh_strip debug symbol extraction: ignored packages: WARNING: not running pkgbinarymangler for this package, as requested dpkg-deb: building package `primer3-dbgsym' in `../primer3-dbgsym_2.2.3-1_i386.ddeb'. dh_compress -pprimer3 dh_fixperms -pprimer3 dh_makeshlibs -pprimer3 dh_installdeb -pprimer3 dh_perl -pprimer3 dh_shlibdeps -pprimer3 dh_gencontrol -pprimer3 dh_scour -pprimer3 # symlink identical documentation to depending packages [ -n "$CDBS_NO_DOC_SYMLINKING" ] || \ [ -h debian/primer3/usr/share/doc ] || \ [ -h debian/primer3/usr/share/doc/primer3 ] || \ [ ! -d debian/primer3/usr/share/doc ] || \ for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/primer3/DEBIAN/control`; do \ if [ -d debian/$dep/usr/share/doc ]; then \ echo "Searching for duplicated docs in dependency $dep..."; \ rootdir=`pwd`; \ (cd debian/primer3/usr/share/doc/primer3; find -type f ! -name copyright | while read f; do \ thisfile="$rootdir/debian/primer3/usr/share/doc/primer3/$f"; \ depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \ if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \ echo " symlinking $f in primer3 to file in $dep"; \ rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \ fi; \ done ); \ fi; \ done # symlink identical Gnome help files within packages if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/primer3/usr/share/gnome/help ]; then \ cd debian/primer3 && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \ set -- $(echo $s | tr ' ' '\n' | sort); \ f=$1; shift; \ for d; do \ echo "symlinking duplicate Gnome help file $d to $f"; \ rm $d; ln -s /$f $d; \ done; \ done; \ fi dh_link -p primer3 dh_md5sums -pprimer3 dh_builddeb -pprimer3 INFO: pkgstriptranslations version 84 pkgstriptranslations: processing control file: ./debian/primer3/DEBIAN/control, package primer3, directory ./debian/primer3 pkgstriptranslations: primer3 does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/primer3/DEBIAN/control, package primer3, directory debian/primer3 dpkg-deb: warning: 'debian/primer3/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `primer3' in `../primer3_2.2.3-1_i386.deb'. dpkg-genchanges -b -mUbuntu/i386 Build Daemon >../primer3_2.2.3-1_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build primer3-2.2.3 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20101118-1159 Publishing debug debs. chroot-autobuild/build/buildd/primer3_2.2.3-1_i386.deb: new debian package, version 2.0. size 183442 bytes: control archive= 1171 bytes. 942 bytes, 19 lines control 861 bytes, 13 lines md5sums Package: primer3 Version: 2.2.3-1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 572 Depends: libc6 (>= 2.11), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.1.1) Suggests: ncbi-epcr Enhances: emboss Section: science Priority: optional Homepage: http://primer3.sourceforge.net Description: Tool to design flanking oligo nucleotides for DNA amplification Primer3 picks primers for Polymerase Chain Reactions (PCRs), considering as criteria oligonucleotide melting temperature, size, GC content and primer-dimer possibilities, PCR product size, positional constraints within the source sequence, and miscellaneous other constraints. All of these criteria are user-specifiable as constraints, and some are specifiable as terms in an objective function that characterizes an optimal primer pair. chroot-autobuild/build/buildd/primer3_2.2.3-1_i386.deb: drwxr-xr-x root/root 0 2010-11-18 11:59 ./ drwxr-xr-x root/root 0 2010-11-18 11:59 ./usr/ drwxr-xr-x root/root 0 2010-11-18 11:59 ./usr/share/ drwxr-xr-x root/root 0 2010-11-18 11:59 ./usr/share/doc/ drwxr-xr-x root/root 0 2010-11-18 11:59 ./usr/share/doc/primer3/ -rw-r--r-- root/root 188882 2010-07-08 19:20 ./usr/share/doc/primer3/primer3_manual.htm -rw-r--r-- root/root 1727 2010-11-17 13:40 ./usr/share/doc/primer3/changelog.Debian.gz -rw-r--r-- root/root 306 2008-11-17 06:38 ./usr/share/doc/primer3/README.Debian -rw-r--r-- root/root 3369 2009-10-03 20:49 ./usr/share/doc/primer3/copyright drwxr-xr-x root/root 0 2010-11-18 11:59 ./usr/share/doc/primer3/examples/ -rw-r--r-- root/root 480 2010-07-08 18:58 ./usr/share/doc/primer3/examples/example -rw-r--r-- root/root 5992 2010-09-17 08:46 ./usr/share/doc/primer3/release_notes.txt.gz drwxr-xr-x root/root 0 2010-11-18 11:59 ./usr/share/doc-base/ -rw-r--r-- root/root 660 2010-11-17 14:04 ./usr/share/doc-base/primer3-manual drwxr-xr-x root/root 0 2010-11-18 11:59 ./usr/share/man/ drwxr-xr-x root/root 0 2010-11-18 11:59 ./usr/share/man/man1/ -rw-r--r-- root/root 1461 2010-11-18 11:59 ./usr/share/man/man1/oligotm.1.gz -rw-r--r-- root/root 1647 2010-11-18 11:59 ./usr/share/man/man1/ntdpal.1.gz -rw-r--r-- root/root 1674 2010-11-18 11:59 ./usr/share/man/man1/primer3_core.1.gz drwxr-xr-x root/root 0 2010-11-18 11:59 ./usr/bin/ -rwxr-xr-x root/root 255636 2010-11-18 11:59 ./usr/bin/primer3_core -rwxr-xr-x root/root 21932 2010-11-18 11:59 ./usr/bin/ntdpal -rwxr-xr-x root/root 13720 2010-11-18 11:59 ./usr/bin/oligotm primer3_2.2.3-1_i386.changes: Format: 1.8 Date: Wed, 17 Nov 2010 14:01:59 +0100 Source: primer3 Binary: primer3 Architecture: i386 Version: 2.2.3-1 Distribution: natty Urgency: low Maintainer: Ubuntu/i386 Build Daemon Changed-By: Andreas Tille Description: primer3 - Tool to design flanking oligo nucleotides for DNA amplification Changes: primer3 (2.2.3-1) unstable; urgency=low . * New upstream version * debian/primer3.docs: s/README.txt/primer3_manual.htm/ * debian/compat: 7 * debian/control: - Build-Depends: debhelper (>= 7) - Standards-Version: 3.9.1 (no changes needed * debian/source/format: 3.0 (quilt) * debian/README.source * debian/primer3.doc-base Checksums-Sha1: 6ca03c932d5d8aa00e9e255ef0d1039d1b010814 183442 primer3_2.2.3-1_i386.deb Checksums-Sha256: 5d721fec96fec0bbe4911ab72e0827e82f3c4e076f6aea16d68bb5b4edd5bebb 183442 primer3_2.2.3-1_i386.deb Files: 8436acd3c35302a552ac150b12d5473d 183442 science optional primer3_2.2.3-1_i386.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/primer3-2.2.3 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge groff-base mime-support m4 gettext file libhtml-parser-perl intltool libwww-perl liburi-perl libhtml-tree-perl autotools-dev po-debconf python2.6 libxml-parser-perl libcroco3 libhtml-tagset-perl libxml2 automake python-scour man-db intltool-debian cdbs html2text gettext-base debhelper libunistring0 python libmagic1 libexpat1 libsqlite3-0 bsdmainutils fdupes autoconf (Reading database ... 16845 files and directories currently installed.) Removing cdbs ... Removing debhelper ... Removing fdupes ... Removing intltool ... Removing po-debconf ... Removing libxml-parser-perl ... Removing automake ... Removing python-scour ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. Removing intltool-debian ... Removing html2text ... Purging configuration files for html2text ... Removing python ... Purging configuration files for python ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing autoconf ... Purging configuration files for autoconf ... Removing groff-base ... Purging configuration files for groff-base ... Removing m4 ... Removing gettext ... Removing file ... Removing libwww-perl ... Removing libhtml-tree-perl ... Removing autotools-dev ... Removing python2.6 ... Purging configuration files for python2.6 ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing gettext-base ... Removing libunistring0 ... Purging configuration files for libunistring0 ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing libexpat1 ... Purging configuration files for libexpat1 ... Removing libsqlite3-0 ... Purging configuration files for libsqlite3-0 ... Removing mime-support ... Purging configuration files for mime-support ... Removing libhtml-parser-perl ... Removing liburi-perl ... Removing libhtml-tagset-perl ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20101118-1159 Build needed 00:24:05, 34664k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '40d673dea0730cd127b036b1be14a480ebd7b350'] Scanning for processes to kill in build /home/buildd/build-40d673dea0730cd127b036b1be14a480ebd7b350/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '40d673dea0730cd127b036b1be14a480ebd7b350'] Unmounting chroot for build 40d673dea0730cd127b036b1be14a480ebd7b350... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '40d673dea0730cd127b036b1be14a480ebd7b350'] Removing build 40d673dea0730cd127b036b1be14a480ebd7b350