Ubuntu
plasmidseeker package

plasmidseeker 1.3+dfsg-3 source package in Ubuntu

Changelog

plasmidseeker (1.3+dfsg-3) unstable; urgency=medium

  * Fix watch file
  * Standards-Version: 4.6.1 (routine-update)

 -- Andreas Tille <email address hidden>  Tue, 06 Dec 2022 13:58:16 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Oracular release universe misc
Noble release universe misc
Mantic release universe misc
Lunar release universe misc

Downloads

File Size SHA-256 Checksum
plasmidseeker_1.3+dfsg-3.dsc 2.0 KiB e2656688dd83b39831185ded3e1c15cf930faaf9353838d9b62e24d8b616cf85
plasmidseeker_1.3+dfsg.orig.tar.xz 23.5 KiB e48044d686c0f06af566d7ce0f45bdad941552c7d38c105aec955141acddf446
plasmidseeker_1.3+dfsg-3.debian.tar.xz 4.9 KiB fd4332a101c36b87685f7c66bb08b2d2d57be021f0bce6225910fe9d37ff83b9

Available diffs

No changes file available.

Binary packages built by this source

plasmidseeker: identification of known plasmids from whole-genome sequencing reads

 PlasmidSeeker is a k-mer based program for the identification of known
 plasmids from bacterial whole genome sequencing reads.
 .
 PlasmidSeeker that enables the detection of plasmids from bacterial WGS
 data without read assembly. The PlasmidSeeker algorithm is based on
 k-mers and uses k-mer abundance to distinguish between plasmid and
 bacterial sequences. The performance of PlasmidSeeker was tested on a set
 of simulated and real bacterial WGS samples, resulting in 100%
 sensitivity and 99.98% specificity.