Ubuntu
picard-tools package

picard-tools 2.8.1+dfsg-2 source package in Ubuntu

Changelog

picard-tools (2.8.1+dfsg-2) unstable; urgency=medium

  * Team upload.
  * Add simple autopkgtest test-suite
    Closes: #848334
  * Add README.test

 -- Nadiya Sitdykova <email address hidden>  Fri, 31 Mar 2017 01:15:20 -0400

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
all
Section:
science
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Builds

Artful: [FULLYBUILT] amd64

Downloads

File Size SHA-256 Checksum
picard-tools_2.8.1+dfsg-2.dsc 2.5 KiB c176c46bd96bd6038526bc303441a46b4e7be7bf716d40405a4acc9ccd606646
picard-tools_2.8.1+dfsg.orig.tar.xz 1.9 MiB 23a95d93b4bd7fdd783ab47760933ea8be2ccfe7feaa9c99507d3ce447499044
picard-tools_2.8.1+dfsg-2.debian.tar.xz 11.6 KiB 9e1f2d0ee864c1374c512777455aa7d53a15b86d02628b18b49abd9cc6ae495c

Available diffs

No changes file available.

Binary packages built by this source

libpicard-java: Java library to manipulate SAM and BAM files

 SAM (Sequence Alignment/Map) format is a generic format for storing
 large nucleotide sequence alignments. This library provides classes to
 manipulate SAM and BAM files.
 .
 A command line wrapper for this library is provided in the picard-tools
 package.

libpicard-java-doc: No summary available for libpicard-java-doc in ubuntu artful.

No description available for libpicard-java-doc in ubuntu artful.

picard-tools: Command line tools to manipulate SAM and BAM files

 SAM (Sequence Alignment/Map) format is a generic format for storing
 large nucleotide sequence alignments. Picard Tools includes these
 utilities to manipulate SAM and BAM files:
  AddCommentsToBam FifoBuffer
  AddOrReplaceReadGroups FilterSamReads
  BaitDesigner FilterVcf
  BamIndexStats FixMateInformation
  BamToBfq GatherBamFiles
  BedToIntervalList GatherVcfs
  BuildBamIndex GenotypeConcordance
  CalculateHsMetrics IlluminaBasecallsToFastq
  CalculateReadGroupChecksum IlluminaBasecallsToSam
  CheckIlluminaDirectory LiftOverIntervalList
  CheckTerminatorBlock LiftoverVcf
  CleanSam MakeSitesOnlyVcf
  CollectAlignmentSummaryMetrics MarkDuplicates
  CollectBaseDistributionByCycle MarkDuplicatesWithMateCigar
  CollectGcBiasMetrics MarkIlluminaAdapters
  CollectHiSeqXPfFailMetrics MeanQualityByCycle
  CollectIlluminaBasecallingMetrics MergeBamAlignment
  CollectIlluminaLaneMetrics MergeSamFiles
  CollectInsertSizeMetrics MergeVcfs
  CollectJumpingLibraryMetrics NormalizeFasta
  CollectMultipleMetrics PositionBasedDownsampleSam
  CollectOxoGMetrics QualityScoreDistribution
  CollectQualityYieldMetrics RenameSampleInVcf
  CollectRawWgsMetrics ReorderSam
  CollectRnaSeqMetrics ReplaceSamHeader
  CollectRrbsMetrics RevertOriginalBaseQualitiesAndAddMateCigar
  CollectSequencingArtifactMetrics RevertSam
  CollectTargetedPcrMetrics SamFormatConverter
  CollectVariantCallingMetrics SamToFastq
  CollectWgsMetrics ScatterIntervalsByNs
  CompareMetrics SortSam
  CompareSAMs SortVcf
  ConvertSequencingArtifactToOxoG SplitSamByLibrary
  CreateSequenceDictionary SplitVcfs
  DownsampleSam UpdateVcfSequenceDictionary
  EstimateLibraryComplexity ValidateSamFile
  ExtractIlluminaBarcodes VcfFormatConverter
  ExtractSequences VcfToIntervalList
  FastqToSam ViewSam