Sync picard-tools 1.79-1 (universe) from Debian unstable (main)
Affects | Status | Importance | Assigned to | Milestone | |
---|---|---|---|---|---|
picard-tools (Ubuntu) |
Fix Released
|
Undecided
|
Unassigned | ||
snappy1.0.3-java (Debian) |
Fix Released
|
Unknown
|
|||
snappy1.0.3-java (Ubuntu) |
Fix Released
|
Undecided
|
Unassigned |
Bug Description
Please sync picard-tools 1.79-1 (universe) from Debian unstable (main)
Explanation of the Ubuntu delta and why it can be dropped:
* Transition package to use default java implementation:
- d/control: BD on default-jdk, switch runtime dependency to
default-jre | java6-runtime.
- d/rules: Specify source/target = 1.5 to ensure that backwards
compatible bytecode is built.
All of the Ubuntu changes were made in Debian as well, so a sync is fine for this package.
Changelog entries since current raring version 1.46-1ubuntu1:
picard-tools (1.79-1) unstable; urgency=low
* New upstream release 1.79
-- Olivier Sallou <email address hidden> Mon, 29 Oct 2012 08:58:44 +0100
picard-tools (1.78-1) unstable; urgency=low
* New upstream release
-- Olivier Sallou <email address hidden> Sat, 13 Oct 2012 11:20:49 +0200
picard-tools (1.77-1) unstable; urgency=low
* New upstream release
-- Olivier Sallou <email address hidden> Fri, 21 Sep 2012 16:41:23 +0200
picard-tools (1.76-1) unstable; urgency=low
* New upstream release
-- Olivier Sallou <email address hidden> Fri, 07 Sep 2012 11:44:03 +0200
picard-tools (1.75-1) unstable; urgency=low
[Olivier Sallou]
* New upstream releases.
* Build-depend on libsnappy1.0.3-java (debian/control).
[Charles Plessy]
* Refreshed debian/
* Use default java implementation.
- debian/control: BD on default-jdk, switch runtime dependency to
default-jre | java6-runtime.
- debian/rules: Specify source/target = 1.5 to ensure that backwards
compatible bytecode is built.
- Closes: #684172, thanks to J. Page and Ubuntu.
-- Olivier Sallou <email address hidden> Thu, 06 Sep 2012 09:10:11 +0900
Changed in snappy1.0.3-java (Debian): | |
status: | Unknown → New |
Changed in snappy1.0.3-java (Debian): | |
status: | New → Fix Released |
the unmodified package fails to build in raring:
compile-sam-jdk: picard- tools-1. 79/classes picard- tools-1. 79/build. xml:101: warning: 'includeantruntime' was not set, defaulting to build.sysclassp ath=last; set to false for repeatable builds picard- tools-1. 79/classes picard- tools-1. 79/src/ java/net/ sf/samtools/ util/SnappyLoad er.java: 27: error: package org.xerial.snappy does not exist snappy. LoadSnappy; picard- tools-1. 79/src/ java/net/ sf/samtools/ util/SnappyLoad er.java: 28: error: package org.xerial.snappy does not exist snappy. SnappyInputStre am; picard- tools-1. 79/src/ java/net/ sf/samtools/ util/SnappyLoad er.java: 44: error: cannot find symbol picard- tools-1. 79/src/ java/net/ sf/samtools/ util/SnappyLoad er.java: 86: error: cannot find symbol load()) {
[mkdir] Created dir: /tmp/buildd/
[javac] /tmp/buildd/
[javac] Compiling 110 source files to /tmp/buildd/
[javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5
[javac] /tmp/buildd/
[javac] import org.xerial.
[javac] ^
[javac] /tmp/buildd/
[javac] import org.xerial.
[javac] ^
[javac] /tmp/buildd/
[javac] private final SnappyInputStream ignoreMe = null;
[javac] ^
[javac] symbol: class SnappyInputStream
[javac] location: class SnappyLoader
[javac] /tmp/buildd/
[javac] if (!LoadSnappy.
[javac] ^
[javac] symbol: variable LoadSnappy
[javac] location: class SnappyLoader
[javac] Note: Some input files use or override a deprecated API.
[javac] Note: Recompile with -Xlint:deprecation for details.
[javac] Note: Some input files use unchecked or unsafe operations.
[javac] Note: Recompile with -Xlint:unchecked for details.
[javac] 4 errors
[javac] 1 warning