Ubuntu
physamp package

physamp 1.1.0-1build1 source package in Ubuntu

Changelog

physamp (1.1.0-1build1) focal; urgency=medium

  * No-change rebuild for libgcc-s1 package name change.

 -- Matthias Klose <email address hidden>  Mon, 23 Mar 2020 07:22:49 +0100

Upload details

Uploaded by:
Matthias Klose
Uploaded to:
Focal
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Focal release universe misc

Downloads

File Size SHA-256 Checksum
physamp_1.1.0.orig.tar.gz 236.2 KiB 0c687e7f46d6d5732a3ad6f029a0169667921101294a9fb5efaae9adfc397ae8
physamp_1.1.0-1build1.debian.tar.xz 3.6 KiB 160a68407d879c7ff9f2f32cb6e4d50834607f402a6ca3e911d00d6f89b0eebf
physamp_1.1.0-1build1.dsc 2.0 KiB 5ba71cc30e7ec415f5782b605e09a7723146c62901e99d3a09774cab841a108c

View changes file

Binary packages built by this source

physamp: sample sequence alignment corresponding to phylogeny

 The PhySamp package currently contains two programs: bppphysamp, which
 samples sequences according to their similarity, and bppalnoptim, which
 samples a sequence alignment by removing sequences in order to maximize
 the number of sites suitable for a given analysis. The bppalnoptim
 program has three running modes:
  * Interactive: the user will be iteratively proposed a set of choices
    for sequence removal, with their corresponding site gains. The
    procedure stops when the user does not want to remove more sequences,
    and the resulting filtered alignment is written.
  * Automatic: the user enters an a priori criterion for stopping
    the filtering procedure (for instance a minimum number of
    sequences to keep).
  * Diagnostic: this mode allows one to plot the trade-off curve, by
    showing the site gain as a function of the number of removed
    sequences.

physamp-dbgsym: No summary available for physamp-dbgsym in ubuntu hirsute.

No description available for physamp-dbgsym in ubuntu hirsute.