https://launchpad.net/ubuntu/+source/phybin/0.3-3build1/+build/17736190 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-056 4.4.0-161-generic #189-Ubuntu SMP Tue Aug 27 08:10:16 UTC 2019 x86_64 Buildd toolchain package versions: launchpad-buildd_177 python-lpbuildd_177 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 7 Sep 15:44:25 ntpdate[1912]: adjust time server 10.211.37.1 offset 0.008897 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=eoan --arch=amd64 PACKAGEBUILD-17736190 --image-type chroot /home/buildd/filecache-default/6814d4bbdedc39163e5a7d0f0a1f6a039f04bcb5 Creating target for build PACKAGEBUILD-17736190 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=eoan --arch=amd64 PACKAGEBUILD-17736190 Starting target for build PACKAGEBUILD-17736190 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=eoan --arch=amd64 PACKAGEBUILD-17736190 'deb http://ftpmaster.internal/ubuntu eoan main universe' 'deb http://ftpmaster.internal/ubuntu eoan-security main universe' 'deb http://ftpmaster.internal/ubuntu eoan-updates main universe' 'deb http://ftpmaster.internal/ubuntu eoan-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-17736190 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=eoan --arch=amd64 PACKAGEBUILD-17736190 Updating target for build PACKAGEBUILD-17736190 Get:1 http://ftpmaster.internal/ubuntu eoan InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu eoan-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu eoan-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu eoan-proposed InRelease [107 kB] Get:5 http://ftpmaster.internal/ubuntu eoan/main amd64 Packages [969 kB] Get:6 http://ftpmaster.internal/ubuntu eoan/main Translation-en [504 kB] Get:7 http://ftpmaster.internal/ubuntu eoan/universe amd64 Packages [8874 kB] Get:8 http://ftpmaster.internal/ubuntu eoan/universe Translation-en [5229 kB] Get:9 http://ftpmaster.internal/ubuntu eoan-proposed/main amd64 Packages [57.1 kB] Get:10 http://ftpmaster.internal/ubuntu eoan-proposed/main Translation-en [28.9 kB] Get:11 http://ftpmaster.internal/ubuntu eoan-proposed/universe amd64 Packages [679 kB] Get:12 http://ftpmaster.internal/ubuntu eoan-proposed/universe Translation-en [275 kB] Fetched 17.1 MB in 3s (6441 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: binutils binutils-common binutils-x86-64-linux-gnu build-essential coreutils cpp-9 dpkg dpkg-dev g++-9 gcc-9 gcc-9-base libasan5 libatomic1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libdpkg-perl libgcc-9-dev libgcc1 libgnutls30 libgomp1 libitm1 liblsan0 libquadmath0 libsqlite3-0 libstdc++-9-dev libstdc++6 libtsan0 libubsan1 32 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 47.7 MB of archives. After this operation, 270 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu eoan/main amd64 coreutils amd64 8.30-3ubuntu2 [1249 kB] Get:2 http://ftpmaster.internal/ubuntu eoan-proposed/main amd64 dpkg amd64 1.19.7ubuntu2 [1130 kB] Get:3 http://ftpmaster.internal/ubuntu eoan/main amd64 libc6-dev amd64 2.30-0ubuntu1 [2549 kB] Get:4 http://ftpmaster.internal/ubuntu eoan/main amd64 libc-dev-bin amd64 2.30-0ubuntu1 [71.7 kB] Get:5 http://ftpmaster.internal/ubuntu eoan/main amd64 libcc1-0 amd64 9.2.1-7ubuntu1 [49.0 kB] Get:6 http://ftpmaster.internal/ubuntu eoan/main amd64 gcc-9-base amd64 9.2.1-7ubuntu1 [19.2 kB] Get:7 http://ftpmaster.internal/ubuntu eoan/main amd64 libgcc1 amd64 1:9.2.1-7ubuntu1 [40.8 kB] Get:8 http://ftpmaster.internal/ubuntu eoan/main amd64 libgomp1 amd64 9.2.1-7ubuntu1 [89.2 kB] Get:9 http://ftpmaster.internal/ubuntu eoan/main amd64 libitm1 amd64 9.2.1-7ubuntu1 [28.1 kB] Get:10 http://ftpmaster.internal/ubuntu eoan/main amd64 libatomic1 amd64 9.2.1-7ubuntu1 [9236 B] Get:11 http://ftpmaster.internal/ubuntu eoan/main amd64 libasan5 amd64 9.2.1-7ubuntu1 [394 kB] Get:12 http://ftpmaster.internal/ubuntu eoan/main amd64 liblsan0 amd64 9.2.1-7ubuntu1 [139 kB] Get:13 http://ftpmaster.internal/ubuntu eoan/main amd64 libtsan0 amd64 9.2.1-7ubuntu1 [301 kB] Get:14 http://ftpmaster.internal/ubuntu eoan/main amd64 libubsan1 amd64 9.2.1-7ubuntu1 [130 kB] Get:15 http://ftpmaster.internal/ubuntu eoan/main amd64 libquadmath0 amd64 9.2.1-7ubuntu1 [146 kB] Get:16 http://ftpmaster.internal/ubuntu eoan/main amd64 g++-9 amd64 9.2.1-7ubuntu1 [10.2 MB] Get:17 http://ftpmaster.internal/ubuntu eoan/main amd64 libstdc++-9-dev amd64 9.2.1-7ubuntu1 [1685 kB] Get:18 http://ftpmaster.internal/ubuntu eoan/main amd64 libgcc-9-dev amd64 9.2.1-7ubuntu1 [2359 kB] Get:19 http://ftpmaster.internal/ubuntu eoan/main amd64 gcc-9 amd64 9.2.1-7ubuntu1 [9762 kB] Get:20 http://ftpmaster.internal/ubuntu eoan/main amd64 cpp-9 amd64 9.2.1-7ubuntu1 [8956 kB] Get:21 http://ftpmaster.internal/ubuntu eoan/main amd64 libstdc++6 amd64 9.2.1-7ubuntu1 [511 kB] Get:22 http://ftpmaster.internal/ubuntu eoan/main amd64 libbinutils amd64 2.32.51.20190905-0ubuntu1 [474 kB] Get:23 http://ftpmaster.internal/ubuntu eoan/main amd64 binutils-common amd64 2.32.51.20190905-0ubuntu1 [203 kB] Get:24 http://ftpmaster.internal/ubuntu eoan/main amd64 binutils amd64 2.32.51.20190905-0ubuntu1 [3416 B] Get:25 http://ftpmaster.internal/ubuntu eoan/main amd64 binutils-x86-64-linux-gnu amd64 2.32.51.20190905-0ubuntu1 [1639 kB] Get:26 http://ftpmaster.internal/ubuntu eoan/main amd64 libc6 amd64 2.30-0ubuntu1 [2727 kB] Get:27 http://ftpmaster.internal/ubuntu eoan/main amd64 libc-bin amd64 2.30-0ubuntu1 [636 kB] Get:28 http://ftpmaster.internal/ubuntu eoan/main amd64 libgnutls30 amd64 3.6.9-4build1 [792 kB] Get:29 http://ftpmaster.internal/ubuntu eoan/main amd64 libsqlite3-0 amd64 3.29.0-2 [536 kB] Get:30 http://ftpmaster.internal/ubuntu eoan-proposed/main amd64 dpkg-dev all 1.19.7ubuntu2 [679 kB] Get:31 http://ftpmaster.internal/ubuntu eoan-proposed/main amd64 libdpkg-perl all 1.19.7ubuntu2 [230 kB] Get:32 http://ftpmaster.internal/ubuntu eoan-proposed/main amd64 build-essential amd64 12.7ubuntu1 [4648 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 47.7 MB in 1s (83.2 MB/s) (Reading database ... 12730 files and directories currently installed.) Preparing to unpack .../coreutils_8.30-3ubuntu2_amd64.deb ... Unpacking coreutils (8.30-3ubuntu2) over (8.30-3ubuntu1) ... Setting up coreutils (8.30-3ubuntu2) ... (Reading database ... 12730 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.7ubuntu2_amd64.deb ... Unpacking dpkg (1.19.7ubuntu2) over (1.19.7ubuntu1) ... Setting up dpkg (1.19.7ubuntu2) ... (Reading database ... 12730 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.30-0ubuntu1_amd64.deb ... Unpacking libc6-dev:amd64 (2.30-0ubuntu1) over (2.29-0ubuntu3) ... Preparing to unpack .../libc-dev-bin_2.30-0ubuntu1_amd64.deb ... Unpacking libc-dev-bin (2.30-0ubuntu1) over (2.29-0ubuntu3) ... Preparing to unpack .../libcc1-0_9.2.1-7ubuntu1_amd64.deb ... Unpacking libcc1-0:amd64 (9.2.1-7ubuntu1) over (9.2.1-6ubuntu1) ... Preparing to unpack .../gcc-9-base_9.2.1-7ubuntu1_amd64.deb ... Unpacking gcc-9-base:amd64 (9.2.1-7ubuntu1) over (9.2.1-6ubuntu1) ... 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Setting up libcc1-0:amd64 (9.2.1-7ubuntu1) ... Setting up liblsan0:amd64 (9.2.1-7ubuntu1) ... Setting up libitm1:amd64 (9.2.1-7ubuntu1) ... Setting up binutils-x86-64-linux-gnu (2.32.51.20190905-0ubuntu1) ... Setting up libtsan0:amd64 (9.2.1-7ubuntu1) ... Setting up binutils (2.32.51.20190905-0ubuntu1) ... Setting up dpkg-dev (1.19.7ubuntu2) ... Setting up libgcc-9-dev:amd64 (9.2.1-7ubuntu1) ... Setting up libc6-dev:amd64 (2.30-0ubuntu1) ... Setting up gcc-9 (9.2.1-7ubuntu1) ... Setting up libstdc++-9-dev:amd64 (9.2.1-7ubuntu1) ... Setting up g++-9 (9.2.1-7ubuntu1) ... Setting up build-essential (12.7ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-17736190 amd64 eoan-proposed -c chroot:build-PACKAGEBUILD-17736190 --arch=amd64 --dist=eoan-proposed --nolog -A phybin_0.3-3build1.dsc Initiating build PACKAGEBUILD-17736190 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-161-generic #189-Ubuntu SMP Tue Aug 27 08:10:16 UTC 2019 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-056.buildd +==============================================================================+ | phybin 0.3-3build1 (amd64) 07 Sep 2019 15:44 | +==============================================================================+ Package: phybin Version: 0.3-3build1 Source Version: 0.3-3build1 Distribution: eoan-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/phybin-hQFmEf/phybin-0.3' with '<>' I: NOTICE: Log filtering will replace 'build/phybin-hQFmEf' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-17736190/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- phybin_0.3-3build1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-doebnj/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-doebnj/apt_archive ./ InRelease Get:2 copy:/<>/resolver-doebnj/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-doebnj/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-doebnj/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-doebnj/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-doebnj/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12740 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10), haskell-devscripts, cdbs, ghc, libghc-hunit-dev, libghc-async-dev, libghc-fgl-dev, libghc-graphviz-dev, libghc-hierarchical-clustering-dev, libghc-parsec3-dev, libghc-prettyclass-dev, libghc-split-dev (>= 0.2), libghc-text-dev, libghc-vector-dev (>= 0.10), libghc-test-framework-dev, libghc-test-framework-hunit-dev, libghc-test-framework-th-dev Filtered Build-Depends: debhelper (>= 10), haskell-devscripts, cdbs, ghc, libghc-hunit-dev, libghc-async-dev, libghc-fgl-dev, libghc-graphviz-dev, libghc-hierarchical-clustering-dev, libghc-parsec3-dev, libghc-prettyclass-dev, libghc-split-dev (>= 0.2), libghc-text-dev, libghc-vector-dev (>= 0.10), libghc-test-framework-dev, libghc-test-framework-hunit-dev, libghc-test-framework-th-dev dpkg-deb: building package 'sbuild-build-depends-phybin-dummy' in '/<>/resolver-_GS6LG/apt_archive/sbuild-build-depends-phybin-dummy.deb'. Ign:1 copy:/<>/resolver-_GS6LG/apt_archive ./ InRelease Get:2 copy:/<>/resolver-_GS6LG/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-_GS6LG/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-_GS6LG/apt_archive ./ Sources [335 B] Get:5 copy:/<>/resolver-_GS6LG/apt_archive ./ Packages [658 B] Fetched 3112 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install phybin build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cdbs dctrl-tools debhelper dh-autoreconf dh-buildinfo dh-strip-nondeterminism dh-translations dwz file gettext gettext-base ghc groff-base haskell-devscripts haskell-devscripts-minimal hscolour html-xml-utils intltool intltool-debian jq libarchive-zip-perl libasn1-8-heimdal libbsd-dev libbsd0 libcroco3 libcurl3-gnutls libelf1 libencode-locale-perl libexpat1 libffi-dev libfile-listing-perl libfile-stripnondeterminism-perl libfile-which-perl libghc-ansi-terminal-dev libghc-ansi-wl-pprint-dev libghc-async-dev libghc-base-compat-dev libghc-call-stack-dev libghc-colour-dev libghc-dlist-dev libghc-exceptions-dev libghc-extensible-exceptions-dev libghc-fgl-dev libghc-graphviz-dev libghc-hashable-dev libghc-hierarchical-clustering-dev libghc-hostname-dev libghc-hunit-dev libghc-language-haskell-extract-dev libghc-old-locale-dev libghc-polyparse-dev libghc-prettyclass-dev libghc-primitive-dev libghc-random-dev libghc-regex-base-dev libghc-regex-posix-dev libghc-split-dev libghc-src-exts-dev libghc-temporary-dev libghc-test-framework-dev libghc-test-framework-hunit-dev libghc-test-framework-th-dev libghc-transformers-compat-dev libghc-vector-dev libghc-wl-pprint-text-dev libghc-xml-dev libglib2.0-0 libgmp-dev libgmpxx4ldbl libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhx509-5-heimdal libicu63 libio-html-perl libio-socket-ssl-perl libjq1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmpdec2 libncurses-dev libncurses5-dev libnet-http-perl libnet-ssleay-perl libnghttp2-14 libonig5 libpipeline1 libpsl5 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwind0-heimdal libwww-perl libwww-robotrules-perl libxml-parser-perl libxml2 m4 man-db mime-support netbase perl-openssl-defaults po-debconf python3 python3-minimal python3-pkg-resources python3-scour python3-six python3.7 python3.7-minimal scour Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation devscripts debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev ghc-prof ghc-doc haskell-doc llvm-6.0 groff libghc-ansi-terminal-doc libghc-ansi-terminal-prof libghc-ansi-wl-pprint-doc libghc-ansi-wl-pprint-prof libghc-async-doc libghc-async-prof libghc-base-compat-doc libghc-base-compat-prof libghc-call-stack-doc libghc-call-stack-prof libghc-colour-doc libghc-colour-prof libghc-dlist-doc libghc-dlist-prof libghc-exceptions-doc libghc-exceptions-prof libghc-extensible-exceptions-doc libghc-extensible-exceptions-prof libghc-fgl-doc libghc-fgl-prof libghc-graphviz-doc libghc-graphviz-prof libghc-hashable-doc libghc-hashable-prof libghc-hierarchical-clustering-doc libghc-hierarchical-clustering-prof libghc-hostname-doc libghc-hostname-prof libghc-hunit-doc libghc-hunit-prof libghc-language-haskell-extract-doc libghc-language-haskell-extract-prof libghc-old-locale-doc libghc-old-locale-prof libghc-polyparse-doc libghc-polyparse-prof libghc-prettyclass-doc libghc-prettyclass-prof libghc-primitive-doc libghc-primitive-prof libghc-random-doc libghc-random-prof libghc-regex-base-doc libghc-regex-base-prof libghc-regex-posix-doc libghc-regex-posix-prof libghc-split-doc libghc-split-prof libghc-src-exts-doc libghc-src-exts-prof libghc-temporary-doc libghc-temporary-prof libghc-test-framework-doc libghc-test-framework-prof libghc-test-framework-hunit-doc libghc-test-framework-hunit-prof libghc-test-framework-th-doc libghc-test-framework-th-prof libghc-transformers-compat-doc libghc-transformers-compat-prof libghc-vector-doc libghc-vector-prof libghc-wl-pprint-text-doc libghc-wl-pprint-text-prof libghc-xml-doc libghc-xml-prof gmp-doc libgmp10-doc libmpfr-dev krb5-doc krb5-user libdata-dump-perl libcrypt-ssleay-perl ncurses-doc libtool-doc gfortran | fortran95-compiler gcj-jdk libauthen-ntlm-perl m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3-setuptools python3.7-venv python3.7-doc binfmt-support gir1.2-rsvg-2.0 python3-gi-cairo Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libhtml-format-perl krb5-locales publicsuffix libsasl2-modules libltdl-dev libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cdbs dctrl-tools debhelper dh-autoreconf dh-buildinfo dh-strip-nondeterminism dh-translations dwz file gettext gettext-base ghc groff-base haskell-devscripts haskell-devscripts-minimal hscolour html-xml-utils intltool intltool-debian jq libarchive-zip-perl libasn1-8-heimdal libbsd-dev libbsd0 libcroco3 libcurl3-gnutls libelf1 libencode-locale-perl libexpat1 libffi-dev libfile-listing-perl libfile-stripnondeterminism-perl libfile-which-perl libghc-ansi-terminal-dev libghc-ansi-wl-pprint-dev libghc-async-dev libghc-base-compat-dev libghc-call-stack-dev libghc-colour-dev libghc-dlist-dev libghc-exceptions-dev libghc-extensible-exceptions-dev libghc-fgl-dev libghc-graphviz-dev libghc-hashable-dev libghc-hierarchical-clustering-dev libghc-hostname-dev libghc-hunit-dev libghc-language-haskell-extract-dev libghc-old-locale-dev libghc-polyparse-dev libghc-prettyclass-dev libghc-primitive-dev libghc-random-dev libghc-regex-base-dev libghc-regex-posix-dev libghc-split-dev libghc-src-exts-dev libghc-temporary-dev libghc-test-framework-dev libghc-test-framework-hunit-dev libghc-test-framework-th-dev libghc-transformers-compat-dev libghc-vector-dev libghc-wl-pprint-text-dev libghc-xml-dev libglib2.0-0 libgmp-dev libgmpxx4ldbl libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhx509-5-heimdal libicu63 libio-html-perl libio-socket-ssl-perl libjq1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmpdec2 libncurses-dev libncurses5-dev libnet-http-perl libnet-ssleay-perl libnghttp2-14 libonig5 libpipeline1 libpsl5 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwind0-heimdal libwww-perl libwww-robotrules-perl libxml-parser-perl libxml2 m4 man-db mime-support netbase perl-openssl-defaults po-debconf python3 python3-minimal python3-pkg-resources python3-scour python3-six python3.7 python3.7-minimal sbuild-build-depends-phybin-dummy scour 0 upgraded, 146 newly installed, 0 to remove and 0 not upgraded. Need to get 109 MB of archives. After this operation, 1043 MB of additional disk space will be used. 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http://ftpmaster.internal/ubuntu eoan-proposed/universe amd64 libghc-vector-dev amd64 0.12.0.3-2 [1270 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 109 MB in 1s (78.9 MB/s) Selecting previously unselected package libpython3.7-minimal:amd64. 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Processing triggers for libc-bin (2.30-0ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-161-generic amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190905-0ubuntu1 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-7ubuntu1 gcc-9_9.2.1-7ubuntu1 libc6-dev_2.30-0ubuntu1 libstdc++-9-dev_9.2.1-7ubuntu1 libstdc++6_9.2.1-7ubuntu1 linux-libc-dev_5.2.0-15.16 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.3 autoconf_2.69-11 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.2ubuntu6 base-passwd_3.5.46 bash_5.0-4ubuntu1 binutils_2.32.51.20190905-0ubuntu1 binutils-common_2.32.51.20190905-0ubuntu1 binutils-x86-64-linux-gnu_2.32.51.20190905-0ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu2 build-essential_12.7ubuntu1 bzip2_1.0.6-9.2 ca-certificates_20190110 cdbs_0.4.159ubuntu1 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-2ubuntu2 cpp-9_9.2.1-7ubuntu1 dash_0.5.10.2-6 dctrl-tools_2.24-3 debconf_1.5.73 debhelper_12.4ubuntu1 debianutils_4.8.6.3 dh-autoreconf_19 dh-buildinfo_0.11+nmu2 dh-strip-nondeterminism_1.5.0-1 dh-translations_144 diffutils_1:3.7-3 dpkg_1.19.7ubuntu2 dpkg-dev_1.19.7ubuntu2 dwz_0.13-1 e2fsprogs_1.45.2-1ubuntu1 fakeroot_1.23-1 fdisk_2.34-0.1ubuntu2 file_1:5.37-5 findutils_4.6.0+git+20190209-2ubuntu1 g++_4:9.2.1-2ubuntu2 g++-9_9.2.1-7ubuntu1 gcc_4:9.2.1-2ubuntu2 gcc-9_9.2.1-7ubuntu1 gcc-9-base_9.2.1-7ubuntu1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 ghc_8.6.5+dfsg1-4 gpg_2.2.12-1ubuntu3 gpg-agent_2.2.12-1ubuntu3 gpgconf_2.2.12-1ubuntu3 gpgv_2.2.12-1ubuntu3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.10-0ubuntu3 haskell-devscripts_0.15.1 haskell-devscripts-minimal_0.15.1 hostname_3.22 hscolour_1.24.4-2build1 html-xml-utils_7.7-1 init_1.57 init-system-helpers_1.57 intltool_0.51.0-5ubuntu1 intltool-debian_0.35.0+20060710.5 jq_1.5+dfsg-2build1 libacl1_2.2.53-4 libapparmor1_2.13.2-9ubuntu7 libapt-pkg5.90_1.9.3 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.2 libasan5_9.2.1-7ubuntu1 libasn1-8-heimdal_7.5.0+dfsg-3build1 libassuan0_2.5.3-7ubuntu1 libatomic1_9.2.1-7ubuntu1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.5-2ubuntu1 libaudit1_1:2.8.5-2ubuntu1 libbinutils_2.32.51.20190905-0ubuntu1 libblkid1_2.34-0.1ubuntu2 libbsd-dev_0.10.0-1 libbsd0_0.10.0-1 libbz2-1.0_1.0.6-9.2 libc-bin_2.30-0ubuntu1 libc-dev-bin_2.30-0ubuntu1 libc6_2.30-0ubuntu1 libc6-dev_2.30-0ubuntu1 libcap-ng0_0.7.9-2 libcap2_1:2.25-2 libcc1-0_9.2.1-7ubuntu1 libcom-err2_1.45.2-1ubuntu1 libcroco3_0.6.13-1 libcryptsetup12_2:2.2.0-3ubuntu1 libcurl3-gnutls_7.65.3-1ubuntu2 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdebconfclient0_0.249ubuntu1 libdevmapper1.02.1_2:1.02.155-2ubuntu5 libdpkg-perl_1.19.7ubuntu2 libelf1_0.176-1.1 libencode-locale-perl_1.05-1 libexpat1_2.2.7-1 libext2fs2_1.45.2-1ubuntu1 libfakeroot_1.23-1 libfdisk1_2.34-0.1ubuntu2 libffi-dev_3.2.1-9 libffi6_3.2.1-9 libfile-listing-perl_6.04-1 libfile-stripnondeterminism-perl_1.5.0-1 libfile-which-perl_1.23-1 libgcc-9-dev_9.2.1-7ubuntu1 libgcc1_1:9.2.1-7ubuntu1 libgcrypt20_1.8.4-5ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libghc-ansi-terminal-dev_0.8.2-1build1 libghc-ansi-wl-pprint-dev_0.6.8.2-2build1 libghc-async-dev_2.2.2-1build1 libghc-base-compat-dev_0.10.5-1build1 libghc-call-stack-dev_0.1.0-5build1 libghc-colour-dev_2.3.5-1build1 libghc-dlist-dev_0.8.0.6-2 libghc-exceptions-dev_0.10.2-1build1 libghc-extensible-exceptions-dev_0.1.1.4-10build1 libghc-fgl-dev_5.7.0.1-1build1 libghc-graphviz-dev_2999.20.0.3-1build1 libghc-hashable-dev_1.2.7.0-6 libghc-hierarchical-clustering-dev_0.4.6-6 libghc-hostname-dev_1.0-14build1 libghc-hunit-dev_1.6.0.0-2build1 libghc-language-haskell-extract-dev_0.2.4-9build1 libghc-old-locale-dev_1.0.0.7-8build1 libghc-polyparse-dev_1.12.1-1build1 libghc-prettyclass-dev_1.0.0.0-8build1 libghc-primitive-dev_0.6.4.0-3 libghc-random-dev_1.1-11build1 libghc-regex-base-dev_0.93.2-13build1 libghc-regex-posix-dev_0.95.2-11build1 libghc-split-dev_0.2.3.3-3 libghc-src-exts-dev_1.20.3-1build1 libghc-temporary-dev_1.3-1build1 libghc-test-framework-dev_0.8.2.0-3 libghc-test-framework-hunit-dev_0.3.0.2-6build1 libghc-test-framework-th-dev_0.2.4-11build1 libghc-transformers-compat-dev_0.6.5-1build1 libghc-vector-dev_0.12.0.3-2 libghc-wl-pprint-text-dev_1.2.0.0-3build1 libghc-xml-dev_1.3.14-9build1 libglib2.0-0_2.61.3-1 libgmp-dev_2:6.1.2+dfsg-4 libgmp10_2:6.1.2+dfsg-4 libgmpxx4ldbl_2:6.1.2+dfsg-4 libgnutls30_3.6.9-4build1 libgomp1_9.2.1-7ubuntu1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6 libgssapi3-heimdal_7.5.0+dfsg-3build1 libhcrypto4-heimdal_7.5.0+dfsg-3build1 libheimbase1-heimdal_7.5.0+dfsg-3build1 libheimntlm0-heimdal_7.5.0+dfsg-3build1 libhogweed4_3.4.1-1 libhtml-parser-perl_3.72-3build2 libhtml-tagset-perl_3.20-3 libhtml-tree-perl_5.07-2 libhttp-cookies-perl_6.04-1 libhttp-date-perl_6.02-1 libhttp-message-perl_6.18-1 libhttp-negotiate-perl_6.01-1 libhx509-5-heimdal_7.5.0+dfsg-3build1 libicu63_63.2-2 libidn11_1.33-2.2ubuntu2 libidn2-0_2.2.0-1 libio-html-perl_1.001-1 libio-socket-ssl-perl_2.066-0ubuntu4 libip4tc2_1.8.3-2ubuntu2 libisl21_0.21-1 libitm1_9.2.1-7ubuntu1 libjq1_1.5+dfsg-2build1 libjson-c4_0.13.1+dfsg-4 libk5crypto3_1.17-6 libkeyutils1_1.6-6 libkmod2_26-1ubuntu1 libkrb5-26-heimdal_7.5.0+dfsg-3build1 libkrb5-3_1.17-6 libkrb5support0_1.17-6 libldap-2.4-2_2.4.48+dfsg-1ubuntu1 libldap-common_2.4.48+dfsg-1ubuntu1 liblockfile-bin_1.15-1 liblockfile1_1.15-1 liblsan0_9.2.1-7ubuntu1 liblwp-mediatypes-perl_6.04-1 liblwp-protocol-https-perl_6.07-2ubuntu2 liblz4-1_1.9.1-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.34-0.1ubuntu2 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncurses-dev_6.1+20190803-1ubuntu1 libncurses5-dev_6.1+20190803-1ubuntu1 libncurses6_6.1+20190803-1ubuntu1 libncursesw6_6.1+20190803-1ubuntu1 libnet-http-perl_6.19-1 libnet-ssleay-perl_1.88-0ubuntu1 libnettle6_3.4.1-1 libnghttp2-14_1.39.2-1 libnpth0_1.6-1 libonig5_6.9.2-1 libp11-kit0_0.23.16.1-2 libpam-modules_1.3.1-5ubuntu1 libpam-modules-bin_1.3.1-5ubuntu1 libpam-runtime_1.3.1-5ubuntu1 libpam0g_1.3.1-5ubuntu1 libpcre2-8-0_10.32-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpng16-16_1.6.37-1 libprocps7_2:3.3.15-2ubuntu3 libpsl5_0.20.2-2 libpython3-stdlib_3.7.3-1 libpython3.7-minimal_3.7.4-4 libpython3.7-stdlib_3.7.4-4 libquadmath0_9.2.1-7ubuntu1 libreadline8_8.0-3 libroken18-heimdal_7.5.0+dfsg-3build1 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1build3 libsasl2-modules-db_2.1.27+dfsg-1build3 libseccomp2_2.4.1-0ubuntu0.19.10.3 libselinux1_2.9-2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu2 libsqlite3-0_3.29.0-2 libss2_1.45.2-1ubuntu1 libssh-4_0.9.0-1 libssl1.1_1.1.1c-1ubuntu4 libstdc++-9-dev_9.2.1-7ubuntu1 libstdc++6_9.2.1-7ubuntu1 libsub-override-perl_0.09-2 libsystemd0_241-7ubuntu1 libtasn1-6_4.14-2 libtimedate-perl_2.3000-2 libtinfo6_6.1+20190803-1ubuntu1 libtool_2.4.6-11 libtry-tiny-perl_0.30-1 libtsan0_9.2.1-7ubuntu1 libubsan1_9.2.1-7ubuntu1 libuchardet0_0.0.6-3 libudev1_241-7ubuntu1 libunistring2_0.9.10-2 liburi-perl_1.76-1 libuuid1_2.34-0.1ubuntu2 libwind0-heimdal_7.5.0+dfsg-3build1 libwww-perl_6.39-1 libwww-robotrules-perl_6.02-1 libxml-parser-perl_2.44-4 libxml2_2.9.4+dfsg1-7ubuntu3 libzstd1_1.4.3+dfsg-1 linux-libc-dev_5.2.0-15.16 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu3 lsb-base_11.0.1ubuntu1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.7-3 mawk_1.3.3-17ubuntu3 mime-support_3.63ubuntu1 mount_2.34-0.1ubuntu2 ncurses-base_6.1+20190803-1ubuntu1 ncurses-bin_6.1+20190803-1ubuntu1 netbase_5.6 openssl_1.1.1c-1ubuntu4 optipng_0.7.7-1 passwd_1:4.5-1.1ubuntu3 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 perl-openssl-defaults_3build1 pinentry-curses_1.1.0-3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 python3_3.7.3-1 python3-minimal_3.7.3-1 python3-pkg-resources_41.1.0-1 python3-scour_0.37-2 python3-six_1.12.0-2 python3.7_3.7.4-4 python3.7-minimal_3.7.4-4 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-phybin-dummy_0.invalid.0 scour_0.37-2 sed_4.7-1 sensible-utils_0.0.12 systemd_241-7ubuntu1 systemd-sysv_241-7ubuntu1 sysvinit-utils_2.95-5ubuntu2 tar_1.30+dfsg-6 tzdata_2019b-2 ubuntu-keyring_2018.09.18.1 util-linux_2.34-0.1ubuntu2 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Sep 7 15:41:32 2019 UTC gpgv: using RSA key 92978A6E195E4921825F7FF0F34F09744E9F5DD9 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./phybin_0.3-3build1.dsc dpkg-source: info: extracting phybin in phybin-0.3 dpkg-source: info: unpacking phybin_0.3.orig.tar.gz dpkg-source: info: unpacking phybin_0.3-3build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unconstraint-text-dependency.patch dpkg-source: info: applying unsafeIOToST.patch dpkg-source: info: applying ghc-8.6.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-17736190 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-17736190 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-17736190 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package phybin dpkg-buildpackage: info: source version 0.3-3build1 dpkg-buildpackage: info: source distribution eoan dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean test -x debian/rules dh_clean . /usr/share/haskell-devscripts/Dh_Haskell.sh && \ clean_recipe Running rm -rf dist dist-ghc dist-ghcjs dist-hugs debian/hlibrary.setup Setup.hi Setup.ho Setup.o .\*config\* Running rm -f configure-ghc-stamp configure-ghcjs-stamp build-ghc-stamp build-ghcjs-stamp build-hugs-stamp build-haddock-stamp Running rm -rf debian/tmp-inst-ghc debian/tmp-inst-ghcjs Running rm -f debian/extra-depends-ghc debian/extra-depends-ghcjs Running rm -f debian/hlibrary.Makefile Running rm -rf debian/dh_haskell_shlibdeps Running rm -rf debian/tmp-db debian/rules build test -x debian/rules mkdir -p "." CDBS WARNING: DEB_DH_STRIP_ARGS is deprecated since 0.4.85 CDBS WARNING: DEB_COMPRESS_EXCLUDE is deprecated since 0.4.85 . /usr/share/haskell-devscripts/Dh_Haskell.sh && \ make_setup_recipe Running ghc --make Setup.hs -o debian/hlibrary.setup [1 of 1] Compiling Main ( Setup.hs, Setup.o ) Setup.hs:5:39: warning: [-Wtabs] Tab character found here, and in two further locations. Please use spaces instead. | 5 | import Distribution.PackageDescription | ^^ Setup.hs:7:1: warning: [-Wdeprecations] Module ‘System.Cmd’ is deprecated: Use "System.Process" instead | 7 | import System.Cmd(system) | ^^^^^^^^^^^^^^^^^^^^^^^^^ Linking debian/hlibrary.setup ... . /usr/share/haskell-devscripts/Dh_Haskell.sh && \ configure_recipe Running debian/hlibrary.setup configure --ghc -v2 --package-db=/var/lib/ghc/package.conf.d --prefix=/usr --libdir=/usr/lib/haskell-packages/ghc/lib --libexecdir=/usr/lib --builddir=dist-ghc --ghc-option=-optl-Wl\,-Bsymbolic-functions --ghc-option=-optl-Wl\,-z\,relro --haddockdir=/usr/lib/ghc-doc/haddock/phybin-0.3/ --datasubdir=phybin --htmldir=/usr/share/doc/libghc-phybin-doc/html/ --enable-tests Running Setup.hs ... Using Parsec parser Configuring phybin-0.3... Flags chosen: bitvec=False, hashrf=True, sequential=False Warning: 'ghc-options: -rtsopts' has no effect for libraries. It should only be used for executables. Dependency HUnit -any: using HUnit-1.6.0.0 Dependency async -any: using async-2.2.2 Dependency base >=3 && <5: using base-4.12.0.0 Dependency bytestring -any: using bytestring-0.10.8.2 Dependency containers -any: using containers-0.6.0.1 Dependency directory -any: using directory-1.3.3.0 Dependency fgl -any: using fgl-5.7.0.1 Dependency filepath -any: using filepath-1.4.2.1 Dependency graphviz >=2999.16: using graphviz-2999.20.0.3 Dependency hierarchical-clustering >=0.4: using hierarchical-clustering-0.4.6 Dependency parsec >=3.1.0: using parsec-3.1.13.0 Dependency prettyclass -any: using prettyclass-1.0.0.0 Dependency process -any: using process-1.6.5.0 Dependency split >=0.2: using split-0.2.3.3 Dependency text -any: using text-1.2.3.1 Dependency time -any: using time-1.8.0.2 Dependency vector >=0.10: using vector-0.12.0.3 Dependency HUnit -any: using HUnit-1.6.0.0 Dependency async -any: using async-2.2.2 Dependency base >=3 && <5: using base-4.12.0.0 Dependency bytestring -any: using bytestring-0.10.8.2 Dependency containers -any: using containers-0.6.0.1 Dependency directory -any: using directory-1.3.3.0 Dependency fgl -any: using fgl-5.7.0.1 Dependency filepath -any: using filepath-1.4.2.1 Dependency graphviz >=2999.16: using graphviz-2999.20.0.3 Dependency hierarchical-clustering >=0.4: using hierarchical-clustering-0.4.6 Dependency parsec >=3.1.0: using parsec-3.1.13.0 Dependency phybin -any: using phybin-0.3 Dependency prettyclass -any: using prettyclass-1.0.0.0 Dependency process -any: using process-1.6.5.0 Dependency split >=0.2: using split-0.2.3.3 Dependency text -any: using text-1.2.3.1 Dependency time -any: using time-1.8.0.2 Dependency vector >=0.10: using vector-0.12.0.3 Dependency HUnit -any: using HUnit-1.6.0.0 Dependency async -any: using async-2.2.2 Dependency base >=3 && <5: using base-4.12.0.0 Dependency bytestring -any: using bytestring-0.10.8.2 Dependency containers -any: using containers-0.6.0.1 Dependency directory -any: using directory-1.3.3.0 Dependency fgl -any: using fgl-5.7.0.1 Dependency filepath -any: using filepath-1.4.2.1 Dependency graphviz >=2999.16: using graphviz-2999.20.0.3 Dependency hierarchical-clustering >=0.4: using hierarchical-clustering-0.4.6 Dependency parsec >=3.1.0: using parsec-3.1.13.0 Dependency prettyclass -any: using prettyclass-1.0.0.0 Dependency process -any: using process-1.6.5.0 Dependency split >=0.2: using split-0.2.3.3 Dependency test-framework -any: using test-framework-0.8.2.0 Dependency test-framework-hunit -any: using test-framework-hunit-0.3.0.2 Dependency test-framework-th -any: using test-framework-th-0.2.4 Dependency text -any: using text-1.2.3.1 Dependency time -any: using time-1.8.0.2 Dependency vector >=0.10: using vector-0.12.0.3 Source component graph: component test:test-phybin component lib component exe:phybin dependency lib Configured component graph: component phybin-0.3-LNK3dN3IUOWBiIVTsXDXXX-test-phybin include HUnit-1.6.0.0-C6N9GX1vz2Z4nPL5JbE3ac include async-2.2.2-5DAi1Cn34zNFvcR5BQYdDA include base-4.12.0.0 include bytestring-0.10.8.2 include containers-0.6.0.1 include directory-1.3.3.0 include fgl-5.7.0.1-K8Xrf9ill51EZBplFnt9fx include filepath-1.4.2.1 include graphviz-2999.20.0.3-JuD59mWfiRV8QyZZqBg8f3 include hierarchical-clustering-0.4.6-JAPuhToqBKjAfHC5mOjSQo include parsec-3.1.13.0 include prettyclass-1.0.0.0-TEwWRphxli3LO8yb54rr0 include process-1.6.5.0 include split-0.2.3.3-6n1iQ0JLFvkeXvJXsAqQc include test-framework-0.8.2.0-9rWb9rIZt1V2zpMGrP5Tk5 include test-framework-hunit-0.3.0.2-FEboM591PcY82mNBbLeEw4 include test-framework-th-0.2.4-FWIZXDtc00YJq4cKrZpe0P include text-1.2.3.1 include time-1.8.0.2 include vector-0.12.0.3-2LEYu9M2i7lERDtz76XG3n component phybin-0.3-DNqARF3AU0I462TSoTIPXZ include HUnit-1.6.0.0-C6N9GX1vz2Z4nPL5JbE3ac include async-2.2.2-5DAi1Cn34zNFvcR5BQYdDA include base-4.12.0.0 include bytestring-0.10.8.2 include containers-0.6.0.1 include directory-1.3.3.0 include fgl-5.7.0.1-K8Xrf9ill51EZBplFnt9fx include filepath-1.4.2.1 include graphviz-2999.20.0.3-JuD59mWfiRV8QyZZqBg8f3 include hierarchical-clustering-0.4.6-JAPuhToqBKjAfHC5mOjSQo include parsec-3.1.13.0 include prettyclass-1.0.0.0-TEwWRphxli3LO8yb54rr0 include process-1.6.5.0 include split-0.2.3.3-6n1iQ0JLFvkeXvJXsAqQc include text-1.2.3.1 include time-1.8.0.2 include vector-0.12.0.3-2LEYu9M2i7lERDtz76XG3n component phybin-0.3-CJzWVgre87E4ekDr5NQYXB-phybin include HUnit-1.6.0.0-C6N9GX1vz2Z4nPL5JbE3ac include async-2.2.2-5DAi1Cn34zNFvcR5BQYdDA include base-4.12.0.0 include bytestring-0.10.8.2 include containers-0.6.0.1 include directory-1.3.3.0 include fgl-5.7.0.1-K8Xrf9ill51EZBplFnt9fx include filepath-1.4.2.1 include graphviz-2999.20.0.3-JuD59mWfiRV8QyZZqBg8f3 include hierarchical-clustering-0.4.6-JAPuhToqBKjAfHC5mOjSQo include parsec-3.1.13.0 include phybin-0.3-DNqARF3AU0I462TSoTIPXZ include prettyclass-1.0.0.0-TEwWRphxli3LO8yb54rr0 include process-1.6.5.0 include split-0.2.3.3-6n1iQ0JLFvkeXvJXsAqQc include text-1.2.3.1 include time-1.8.0.2 include vector-0.12.0.3-2LEYu9M2i7lERDtz76XG3n Linked component graph: unit phybin-0.3-LNK3dN3IUOWBiIVTsXDXXX-test-phybin include HUnit-1.6.0.0-C6N9GX1vz2Z4nPL5JbE3ac include async-2.2.2-5DAi1Cn34zNFvcR5BQYdDA include base-4.12.0.0 include bytestring-0.10.8.2 include containers-0.6.0.1 include directory-1.3.3.0 include fgl-5.7.0.1-K8Xrf9ill51EZBplFnt9fx include filepath-1.4.2.1 include graphviz-2999.20.0.3-JuD59mWfiRV8QyZZqBg8f3 include hierarchical-clustering-0.4.6-JAPuhToqBKjAfHC5mOjSQo include parsec-3.1.13.0 include prettyclass-1.0.0.0-TEwWRphxli3LO8yb54rr0 include process-1.6.5.0 include split-0.2.3.3-6n1iQ0JLFvkeXvJXsAqQc include test-framework-0.8.2.0-9rWb9rIZt1V2zpMGrP5Tk5 include test-framework-hunit-0.3.0.2-FEboM591PcY82mNBbLeEw4 include test-framework-th-0.2.4-FWIZXDtc00YJq4cKrZpe0P include text-1.2.3.1 include time-1.8.0.2 include vector-0.12.0.3-2LEYu9M2i7lERDtz76XG3n unit phybin-0.3-DNqARF3AU0I462TSoTIPXZ include HUnit-1.6.0.0-C6N9GX1vz2Z4nPL5JbE3ac include async-2.2.2-5DAi1Cn34zNFvcR5BQYdDA include base-4.12.0.0 include bytestring-0.10.8.2 include containers-0.6.0.1 include directory-1.3.3.0 include fgl-5.7.0.1-K8Xrf9ill51EZBplFnt9fx include filepath-1.4.2.1 include graphviz-2999.20.0.3-JuD59mWfiRV8QyZZqBg8f3 include hierarchical-clustering-0.4.6-JAPuhToqBKjAfHC5mOjSQo include parsec-3.1.13.0 include prettyclass-1.0.0.0-TEwWRphxli3LO8yb54rr0 include process-1.6.5.0 include split-0.2.3.3-6n1iQ0JLFvkeXvJXsAqQc include text-1.2.3.1 include time-1.8.0.2 include vector-0.12.0.3-2LEYu9M2i7lERDtz76XG3n Bio.Phylogeny.PhyBin=phybin-0.3-DNqARF3AU0I462TSoTIPXZ:Bio.Phylogeny.PhyBin,Bio.Phylogeny.PhyBin.Binning=phybin-0.3-DNqARF3AU0I462TSoTIPXZ:Bio.Phylogeny.PhyBin.Binning,Bio.Phylogeny.PhyBin.CoreTypes=phybin-0.3-DNqARF3AU0I462TSoTIPXZ:Bio.Phylogeny.PhyBin.CoreTypes,Bio.Phylogeny.PhyBin.Parser=phybin-0.3-DNqARF3AU0I462TSoTIPXZ:Bio.Phylogeny.PhyBin.Parser,Bio.Phylogeny.PhyBin.PreProcessor=phybin-0.3-DNqARF3AU0I462TSoTIPXZ:Bio.Phylogeny.PhyBin.PreProcessor,Bio.Phylogeny.PhyBin.RFDistance=phybin-0.3-DNqARF3AU0I462TSoTIPXZ:Bio.Phylogeny.PhyBin.RFDistance,Bio.Phylogeny.PhyBin.Util=phybin-0.3-DNqARF3AU0I462TSoTIPXZ:Bio.Phylogeny.PhyBin.Util,Bio.Phylogeny.PhyBin.Visualize=phybin-0.3-DNqARF3AU0I462TSoTIPXZ:Bio.Phylogeny.PhyBin.Visualize unit phybin-0.3-CJzWVgre87E4ekDr5NQYXB-phybin include HUnit-1.6.0.0-C6N9GX1vz2Z4nPL5JbE3ac include async-2.2.2-5DAi1Cn34zNFvcR5BQYdDA include base-4.12.0.0 include bytestring-0.10.8.2 include containers-0.6.0.1 include directory-1.3.3.0 include fgl-5.7.0.1-K8Xrf9ill51EZBplFnt9fx include filepath-1.4.2.1 include graphviz-2999.20.0.3-JuD59mWfiRV8QyZZqBg8f3 include hierarchical-clustering-0.4.6-JAPuhToqBKjAfHC5mOjSQo include parsec-3.1.13.0 include phybin-0.3-DNqARF3AU0I462TSoTIPXZ include prettyclass-1.0.0.0-TEwWRphxli3LO8yb54rr0 include process-1.6.5.0 include split-0.2.3.3-6n1iQ0JLFvkeXvJXsAqQc include text-1.2.3.1 include time-1.8.0.2 include vector-0.12.0.3-2LEYu9M2i7lERDtz76XG3n Ready component graph: definite phybin-0.3-LNK3dN3IUOWBiIVTsXDXXX-test-phybin depends HUnit-1.6.0.0-C6N9GX1vz2Z4nPL5JbE3ac depends async-2.2.2-5DAi1Cn34zNFvcR5BQYdDA depends base-4.12.0.0 depends bytestring-0.10.8.2 depends containers-0.6.0.1 depends directory-1.3.3.0 depends fgl-5.7.0.1-K8Xrf9ill51EZBplFnt9fx depends filepath-1.4.2.1 depends graphviz-2999.20.0.3-JuD59mWfiRV8QyZZqBg8f3 depends hierarchical-clustering-0.4.6-JAPuhToqBKjAfHC5mOjSQo depends parsec-3.1.13.0 depends prettyclass-1.0.0.0-TEwWRphxli3LO8yb54rr0 depends process-1.6.5.0 depends split-0.2.3.3-6n1iQ0JLFvkeXvJXsAqQc depends test-framework-0.8.2.0-9rWb9rIZt1V2zpMGrP5Tk5 depends test-framework-hunit-0.3.0.2-FEboM591PcY82mNBbLeEw4 depends test-framework-th-0.2.4-FWIZXDtc00YJq4cKrZpe0P depends text-1.2.3.1 depends time-1.8.0.2 depends vector-0.12.0.3-2LEYu9M2i7lERDtz76XG3n definite phybin-0.3-DNqARF3AU0I462TSoTIPXZ depends HUnit-1.6.0.0-C6N9GX1vz2Z4nPL5JbE3ac depends async-2.2.2-5DAi1Cn34zNFvcR5BQYdDA depends base-4.12.0.0 depends bytestring-0.10.8.2 depends containers-0.6.0.1 depends directory-1.3.3.0 depends fgl-5.7.0.1-K8Xrf9ill51EZBplFnt9fx depends filepath-1.4.2.1 depends graphviz-2999.20.0.3-JuD59mWfiRV8QyZZqBg8f3 depends hierarchical-clustering-0.4.6-JAPuhToqBKjAfHC5mOjSQo depends parsec-3.1.13.0 depends prettyclass-1.0.0.0-TEwWRphxli3LO8yb54rr0 depends process-1.6.5.0 depends split-0.2.3.3-6n1iQ0JLFvkeXvJXsAqQc depends text-1.2.3.1 depends time-1.8.0.2 depends vector-0.12.0.3-2LEYu9M2i7lERDtz76XG3n definite phybin-0.3-CJzWVgre87E4ekDr5NQYXB-phybin depends HUnit-1.6.0.0-C6N9GX1vz2Z4nPL5JbE3ac depends async-2.2.2-5DAi1Cn34zNFvcR5BQYdDA depends base-4.12.0.0 depends bytestring-0.10.8.2 depends containers-0.6.0.1 depends directory-1.3.3.0 depends fgl-5.7.0.1-K8Xrf9ill51EZBplFnt9fx depends filepath-1.4.2.1 depends graphviz-2999.20.0.3-JuD59mWfiRV8QyZZqBg8f3 depends hierarchical-clustering-0.4.6-JAPuhToqBKjAfHC5mOjSQo depends parsec-3.1.13.0 depends phybin-0.3-DNqARF3AU0I462TSoTIPXZ depends prettyclass-1.0.0.0-TEwWRphxli3LO8yb54rr0 depends process-1.6.5.0 depends split-0.2.3.3-6n1iQ0JLFvkeXvJXsAqQc depends text-1.2.3.1 depends time-1.8.0.2 depends vector-0.12.0.3-2LEYu9M2i7lERDtz76XG3n Using Cabal-2.4.0.1 compiled by ghc-8.6 Using compiler: ghc-8.6.5 Using install prefix: /usr Executables installed in: /usr/bin Libraries installed in: /usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-8.6.5/phybin-0.3-DNqARF3AU0I462TSoTIPXZ Dynamic Libraries installed in: /usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-8.6.5 Private executables installed in: /usr/lib/x86_64-linux-ghc-8.6.5/phybin-0.3 Data files installed in: /usr/share/phybin Documentation installed in: /usr/share/doc/x86_64-linux-ghc-8.6.5/phybin-0.3 Configuration files installed in: /usr/etc No alex found Using ar found on system at: /usr/bin/x86_64-linux-gnu-ar No c2hs found No cpphs found No doctest found Using gcc version 9 found on system at: /usr/bin/x86_64-linux-gnu-gcc Using ghc version 8.6.5 found on system at: /usr/bin/ghc Using ghc-pkg version 8.6.5 found on system at: /usr/bin/ghc-pkg No ghcjs found No ghcjs-pkg found No greencard found Using haddock version 2.22.0 found on system at: /usr/bin/haddock No happy found Using haskell-suite found on system at: haskell-suite-dummy-location Using haskell-suite-pkg found on system at: haskell-suite-pkg-dummy-location No hmake found Using hpc version 0.67 found on system at: /usr/bin/hpc Using hsc2hs version 0.68.5 found on system at: /usr/bin/hsc2hs Using hscolour version 1.24 found on system at: /usr/bin/HsColour No jhc found Using ld found on system at: /usr/bin/x86_64-linux-gnu-ld.gold No pkg-config found Using runghc version 8.6.5 found on system at: /usr/bin/runghc Using strip version 2.32 found on system at: /usr/bin/strip Using tar found on system at: /bin/tar No uhc found touch configure-ghc-stamp . /usr/share/haskell-devscripts/Dh_Haskell.sh && \ build_recipe Running debian/hlibrary.setup build --builddir=dist-ghc Running Setup.hs ... Preprocessing test suite 'test-phybin' for phybin-0.3.. Building test suite 'test-phybin' for phybin-0.3.. : warning: [-Wmissing-home-modules] These modules are needed for compilation but not listed in your .cabal file's other-modules: Bio.Phylogeny.PhyBin Bio.Phylogeny.PhyBin.Binning Bio.Phylogeny.PhyBin.CoreTypes Bio.Phylogeny.PhyBin.Parser Bio.Phylogeny.PhyBin.PreProcessor Bio.Phylogeny.PhyBin.RFDistance Bio.Phylogeny.PhyBin.Util Bio.Phylogeny.PhyBin.Visualize [1 of 9] Compiling Bio.Phylogeny.PhyBin.CoreTypes ( Bio/Phylogeny/PhyBin/CoreTypes.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/CoreTypes.o ) Bio/Phylogeny/PhyBin/CoreTypes.hs:37:1: warning: [-Wunused-imports] The qualified import of ‘Data.Set’ is redundant except perhaps to import instances from ‘Data.Set’ To import instances alone, use: import Data.Set() | 37 | import qualified Data.Set as S | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [2 of 9] Compiling Bio.Phylogeny.PhyBin.Parser ( Bio/Phylogeny/PhyBin/Parser.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Parser.o ) Bio/Phylogeny/PhyBin/Parser.hs:81:1: warning: [-Wtabs] Tab character found here, and in five further locations. Please use spaces instead. | 81 | Left err -> error ("parse error in file "++ show file ++" at "++ show err) | ^^^^^^^^ Bio/Phylogeny/PhyBin/Parser.hs:98:4: warning: [-Wincomplete-patterns] Pattern match(es) are non-exhaustive In an equation for ‘loop2’: Patterns not matched: _ _ (NTLeaf (_, Nothing) _) _ _ (NTInterior (_, Just _) _) | 98 | loop2 seen acc (NTLeaf (d,Just nm) _) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^... Bio/Phylogeny/PhyBin/Parser.hs:122:3: warning: [-Wincomplete-patterns] Pattern match(es) are non-exhaustive In a case alternative: Patterns not matched: (NTInterior (_, Just _) _) | 122 | case s of | ^^^^^^^^^^... [3 of 9] Compiling Bio.Phylogeny.PhyBin.PreProcessor ( Bio/Phylogeny/PhyBin/PreProcessor.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/PreProcessor.o ) [4 of 9] Compiling Bio.Phylogeny.PhyBin.RFDistance ( Bio/Phylogeny/PhyBin/RFDistance.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/RFDistance.o ) [5 of 9] Compiling Bio.Phylogeny.PhyBin.Util ( Bio/Phylogeny/PhyBin/Util.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Util.o ) Bio/Phylogeny/PhyBin/Util.hs:97:1: warning: [-Wtabs] Tab character found here, and in 13 further locations. Please use spaces instead. | 97 | -- hPutStr stderr$ "Input not a file/directory, assuming wildcard, using 'find' for expansion" | ^^^^^^^^ [6 of 9] Compiling Bio.Phylogeny.PhyBin.Visualize ( Bio/Phylogeny/PhyBin/Visualize.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Visualize.o ) Bio/Phylogeny/PhyBin/Visualize.hs:247:1: warning: [-Wtabs] Tab character found here, and in 29 further locations. Please use spaces instead. | 247 | tree | ^^^^^^^^ [7 of 9] Compiling Bio.Phylogeny.PhyBin.Binning ( Bio/Phylogeny/PhyBin/Binning.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Binning.o ) Bio/Phylogeny/PhyBin/Binning.hs:60:1: warning: [-Wtabs] Tab character found here, and in 58 further locations. Please use spaces instead. | 60 | ++ "Pretty printing:\n " | ^^^^^^^^ [8 of 9] Compiling Bio.Phylogeny.PhyBin ( Bio/Phylogeny/PhyBin.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin.o ) Bio/Phylogeny/PhyBin.hs:17:1: warning: [-Wunused-imports] The import of ‘delete, intersperse, minimumBy’ from module ‘Data.List’ is redundant | 17 | import Data.List (delete, minimumBy, sortBy, foldl1', foldl', intersperse, isPrefixOf) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:28:1: warning: [-Wunused-imports] The import of ‘filterM’ from module ‘Control.Monad’ is redundant | 28 | import Control.Monad (forM, forM_, filterM, when, unless) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:31:1: warning: [-Wunused-imports] The import of ‘Control.Applicative’ is redundant except perhaps to import instances from ‘Control.Applicative’ To import instances alone, use: import Control.Applicative() | 31 | import Control.Applicative ((<$>),(<*>)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:32:1: warning: [-Wunused-imports] The import of ‘Control.Concurrent’ is redundant except perhaps to import instances from ‘Control.Concurrent’ To import instances alone, use: import Control.Concurrent() | 32 | import Control.Concurrent (Chan) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:35:1: warning: [-Wunused-imports] The import of ‘doesFileExist, getDirectoryContents’ from module ‘System.Directory’ is redundant | 35 | import System.Directory (doesFileExist, doesDirectoryExist, createDirectoryIfMissing, | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^... Bio/Phylogeny/PhyBin.hs:37:1: warning: [-Wunused-imports] The import of ‘hClose, openFile’ from module ‘System.IO’ is redundant | 37 | import System.IO (openFile, hClose, IOMode(..), stdout, withFile) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:40:1: warning: [-Wunused-imports] The import of ‘System.Exit’ is redundant except perhaps to import instances from ‘System.Exit’ To import instances alone, use: import System.Exit() | 40 | import System.Exit (ExitCode(..)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:41:1: warning: [-Wunused-imports] The import of ‘Test.HUnit’ is redundant except perhaps to import instances from ‘Test.HUnit’ To import instances alone, use: import Test.HUnit() | 41 | import Test.HUnit ((~:),(~=?),Test,test) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:43:1: warning: [-Wunused-imports] The qualified import of ‘Data.GraphViz’ is redundant except perhaps to import instances from ‘Data.GraphViz’ To import instances alone, use: import Data.GraphViz() | 43 | import qualified Data.GraphViz as Gv | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:47:1: warning: [-Wunused-imports] The import of ‘Data.GraphViz.Printing’ is redundant except perhaps to import instances from ‘Data.GraphViz.Printing’ To import instances alone, use: import Data.GraphViz.Printing() | 47 | import Data.GraphViz.Printing (renderDot) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:52:1: warning: [-Wunused-imports] The import of ‘viewNewickTree’ from module ‘Bio.Phylogeny.PhyBin.Visualize’ is redundant | 52 | import Bio.Phylogeny.PhyBin.Visualize (dotToPDF, dotNewickTree, viewNewickTree, dotDendrogram) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:120:3: warning: [-Wtabs] Tab character found here, and in 25 further locations. Please use spaces instead. | 120 | if reg | ^^^^^^ [9 of 9] Compiling Main ( TestAll.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Main.o ) : warning: [-Wmissing-home-modules] These modules are needed for compilation but not listed in your .cabal file's other-modules: Bio.Phylogeny.PhyBin Bio.Phylogeny.PhyBin.Binning Bio.Phylogeny.PhyBin.CoreTypes Bio.Phylogeny.PhyBin.Parser Bio.Phylogeny.PhyBin.PreProcessor Bio.Phylogeny.PhyBin.RFDistance Bio.Phylogeny.PhyBin.Util Bio.Phylogeny.PhyBin.Visualize Linking dist-ghc/build/test-phybin/test-phybin ... Preprocessing library for phybin-0.3.. Building library for phybin-0.3.. [1 of 8] Compiling Bio.Phylogeny.PhyBin.CoreTypes ( Bio/Phylogeny/PhyBin/CoreTypes.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/CoreTypes.o ) Bio/Phylogeny/PhyBin/CoreTypes.hs:37:1: warning: [-Wunused-imports] The qualified import of ‘Data.Set’ is redundant except perhaps to import instances from ‘Data.Set’ To import instances alone, use: import Data.Set() | 37 | import qualified Data.Set as S | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [2 of 8] Compiling Bio.Phylogeny.PhyBin.Parser ( Bio/Phylogeny/PhyBin/Parser.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/Parser.o ) Bio/Phylogeny/PhyBin/Parser.hs:81:1: warning: [-Wtabs] Tab character found here, and in five further locations. Please use spaces instead. | 81 | Left err -> error ("parse error in file "++ show file ++" at "++ show err) | ^^^^^^^^ Bio/Phylogeny/PhyBin/Parser.hs:98:4: warning: [-Wincomplete-patterns] Pattern match(es) are non-exhaustive In an equation for ‘loop2’: Patterns not matched: _ _ (NTLeaf (_, Nothing) _) _ _ (NTInterior (_, Just _) _) | 98 | loop2 seen acc (NTLeaf (d,Just nm) _) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^... Bio/Phylogeny/PhyBin/Parser.hs:122:3: warning: [-Wincomplete-patterns] Pattern match(es) are non-exhaustive In a case alternative: Patterns not matched: (NTInterior (_, Just _) _) | 122 | case s of | ^^^^^^^^^^... [3 of 8] Compiling Bio.Phylogeny.PhyBin.PreProcessor ( Bio/Phylogeny/PhyBin/PreProcessor.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/PreProcessor.o ) [4 of 8] Compiling Bio.Phylogeny.PhyBin.RFDistance ( Bio/Phylogeny/PhyBin/RFDistance.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/RFDistance.o ) [5 of 8] Compiling Bio.Phylogeny.PhyBin.Util ( Bio/Phylogeny/PhyBin/Util.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/Util.o ) Bio/Phylogeny/PhyBin/Util.hs:97:1: warning: [-Wtabs] Tab character found here, and in 13 further locations. Please use spaces instead. | 97 | -- hPutStr stderr$ "Input not a file/directory, assuming wildcard, using 'find' for expansion" | ^^^^^^^^ [6 of 8] Compiling Bio.Phylogeny.PhyBin.Visualize ( Bio/Phylogeny/PhyBin/Visualize.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/Visualize.o ) Bio/Phylogeny/PhyBin/Visualize.hs:247:1: warning: [-Wtabs] Tab character found here, and in 29 further locations. Please use spaces instead. | 247 | tree | ^^^^^^^^ [7 of 8] Compiling Bio.Phylogeny.PhyBin.Binning ( Bio/Phylogeny/PhyBin/Binning.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/Binning.o ) Bio/Phylogeny/PhyBin/Binning.hs:60:1: warning: [-Wtabs] Tab character found here, and in 58 further locations. Please use spaces instead. | 60 | ++ "Pretty printing:\n " | ^^^^^^^^ [8 of 8] Compiling Bio.Phylogeny.PhyBin ( Bio/Phylogeny/PhyBin.hs, dist-ghc/build/Bio/Phylogeny/PhyBin.o ) Bio/Phylogeny/PhyBin.hs:17:1: warning: [-Wunused-imports] The import of ‘delete, intersperse, minimumBy’ from module ‘Data.List’ is redundant | 17 | import Data.List (delete, minimumBy, sortBy, foldl1', foldl', intersperse, isPrefixOf) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:28:1: warning: [-Wunused-imports] The import of ‘filterM’ from module ‘Control.Monad’ is redundant | 28 | import Control.Monad (forM, forM_, filterM, when, unless) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:31:1: warning: [-Wunused-imports] The import of ‘Control.Applicative’ is redundant except perhaps to import instances from ‘Control.Applicative’ To import instances alone, use: import Control.Applicative() | 31 | import Control.Applicative ((<$>),(<*>)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:32:1: warning: [-Wunused-imports] The import of ‘Control.Concurrent’ is redundant except perhaps to import instances from ‘Control.Concurrent’ To import instances alone, use: import Control.Concurrent() | 32 | import Control.Concurrent (Chan) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:35:1: warning: [-Wunused-imports] The import of ‘doesFileExist, getDirectoryContents’ from module ‘System.Directory’ is redundant | 35 | import System.Directory (doesFileExist, doesDirectoryExist, createDirectoryIfMissing, | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^... Bio/Phylogeny/PhyBin.hs:37:1: warning: [-Wunused-imports] The import of ‘hClose, openFile’ from module ‘System.IO’ is redundant | 37 | import System.IO (openFile, hClose, IOMode(..), stdout, withFile) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:40:1: warning: [-Wunused-imports] The import of ‘System.Exit’ is redundant except perhaps to import instances from ‘System.Exit’ To import instances alone, use: import System.Exit() | 40 | import System.Exit (ExitCode(..)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:41:1: warning: [-Wunused-imports] The import of ‘Test.HUnit’ is redundant except perhaps to import instances from ‘Test.HUnit’ To import instances alone, use: import Test.HUnit() | 41 | import Test.HUnit ((~:),(~=?),Test,test) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:43:1: warning: [-Wunused-imports] The qualified import of ‘Data.GraphViz’ is redundant except perhaps to import instances from ‘Data.GraphViz’ To import instances alone, use: import Data.GraphViz() | 43 | import qualified Data.GraphViz as Gv | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:47:1: warning: [-Wunused-imports] The import of ‘Data.GraphViz.Printing’ is redundant except perhaps to import instances from ‘Data.GraphViz.Printing’ To import instances alone, use: import Data.GraphViz.Printing() | 47 | import Data.GraphViz.Printing (renderDot) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:52:1: warning: [-Wunused-imports] The import of ‘viewNewickTree’ from module ‘Bio.Phylogeny.PhyBin.Visualize’ is redundant | 52 | import Bio.Phylogeny.PhyBin.Visualize (dotToPDF, dotNewickTree, viewNewickTree, dotDendrogram) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:120:3: warning: [-Wtabs] Tab character found here, and in 25 further locations. Please use spaces instead. | 120 | if reg | ^^^^^^ Preprocessing executable 'phybin' for phybin-0.3.. Building executable 'phybin' for phybin-0.3.. : warning: [-Wmissing-home-modules] These modules are needed for compilation but not listed in your .cabal file's other-modules: Bio.Phylogeny.PhyBin Bio.Phylogeny.PhyBin.Binning Bio.Phylogeny.PhyBin.CoreTypes Bio.Phylogeny.PhyBin.Parser Bio.Phylogeny.PhyBin.PreProcessor Bio.Phylogeny.PhyBin.RFDistance Bio.Phylogeny.PhyBin.Util Bio.Phylogeny.PhyBin.Visualize Paths_phybin [ 1 of 10] Compiling Bio.Phylogeny.PhyBin.CoreTypes ( Bio/Phylogeny/PhyBin/CoreTypes.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/CoreTypes.o ) Bio/Phylogeny/PhyBin/CoreTypes.hs:37:1: warning: [-Wunused-imports] The qualified import of ‘Data.Set’ is redundant except perhaps to import instances from ‘Data.Set’ To import instances alone, use: import Data.Set() | 37 | import qualified Data.Set as S | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [ 2 of 10] Compiling Bio.Phylogeny.PhyBin.Parser ( Bio/Phylogeny/PhyBin/Parser.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/Parser.o ) Bio/Phylogeny/PhyBin/Parser.hs:81:1: warning: [-Wtabs] Tab character found here, and in five further locations. Please use spaces instead. | 81 | Left err -> error ("parse error in file "++ show file ++" at "++ show err) | ^^^^^^^^ Bio/Phylogeny/PhyBin/Parser.hs:98:4: warning: [-Wincomplete-patterns] Pattern match(es) are non-exhaustive In an equation for ‘loop2’: Patterns not matched: _ _ (NTLeaf (_, Nothing) _) _ _ (NTInterior (_, Just _) _) | 98 | loop2 seen acc (NTLeaf (d,Just nm) _) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^... Bio/Phylogeny/PhyBin/Parser.hs:122:3: warning: [-Wincomplete-patterns] Pattern match(es) are non-exhaustive In a case alternative: Patterns not matched: (NTInterior (_, Just _) _) | 122 | case s of | ^^^^^^^^^^... [ 3 of 10] Compiling Bio.Phylogeny.PhyBin.PreProcessor ( Bio/Phylogeny/PhyBin/PreProcessor.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/PreProcessor.o ) [ 4 of 10] Compiling Bio.Phylogeny.PhyBin.RFDistance ( Bio/Phylogeny/PhyBin/RFDistance.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/RFDistance.o ) [ 5 of 10] Compiling Bio.Phylogeny.PhyBin.Util ( Bio/Phylogeny/PhyBin/Util.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/Util.o ) Bio/Phylogeny/PhyBin/Util.hs:97:1: warning: [-Wtabs] Tab character found here, and in 13 further locations. Please use spaces instead. | 97 | -- hPutStr stderr$ "Input not a file/directory, assuming wildcard, using 'find' for expansion" | ^^^^^^^^ [ 6 of 10] Compiling Bio.Phylogeny.PhyBin.Visualize ( Bio/Phylogeny/PhyBin/Visualize.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/Visualize.o ) Bio/Phylogeny/PhyBin/Visualize.hs:247:1: warning: [-Wtabs] Tab character found here, and in 29 further locations. Please use spaces instead. | 247 | tree | ^^^^^^^^ [ 7 of 10] Compiling Bio.Phylogeny.PhyBin.Binning ( Bio/Phylogeny/PhyBin/Binning.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/Binning.o ) Bio/Phylogeny/PhyBin/Binning.hs:60:1: warning: [-Wtabs] Tab character found here, and in 58 further locations. Please use spaces instead. | 60 | ++ "Pretty printing:\n " | ^^^^^^^^ [ 8 of 10] Compiling Bio.Phylogeny.PhyBin ( Bio/Phylogeny/PhyBin.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin.o ) Bio/Phylogeny/PhyBin.hs:17:1: warning: [-Wunused-imports] The import of ‘delete, intersperse, minimumBy’ from module ‘Data.List’ is redundant | 17 | import Data.List (delete, minimumBy, sortBy, foldl1', foldl', intersperse, isPrefixOf) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:28:1: warning: [-Wunused-imports] The import of ‘filterM’ from module ‘Control.Monad’ is redundant | 28 | import Control.Monad (forM, forM_, filterM, when, unless) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:31:1: warning: [-Wunused-imports] The import of ‘Control.Applicative’ is redundant except perhaps to import instances from ‘Control.Applicative’ To import instances alone, use: import Control.Applicative() | 31 | import Control.Applicative ((<$>),(<*>)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:32:1: warning: [-Wunused-imports] The import of ‘Control.Concurrent’ is redundant except perhaps to import instances from ‘Control.Concurrent’ To import instances alone, use: import Control.Concurrent() | 32 | import Control.Concurrent (Chan) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:35:1: warning: [-Wunused-imports] The import of ‘doesFileExist, getDirectoryContents’ from module ‘System.Directory’ is redundant | 35 | import System.Directory (doesFileExist, doesDirectoryExist, createDirectoryIfMissing, | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^... Bio/Phylogeny/PhyBin.hs:37:1: warning: [-Wunused-imports] The import of ‘hClose, openFile’ from module ‘System.IO’ is redundant | 37 | import System.IO (openFile, hClose, IOMode(..), stdout, withFile) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:40:1: warning: [-Wunused-imports] The import of ‘System.Exit’ is redundant except perhaps to import instances from ‘System.Exit’ To import instances alone, use: import System.Exit() | 40 | import System.Exit (ExitCode(..)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:41:1: warning: [-Wunused-imports] The import of ‘Test.HUnit’ is redundant except perhaps to import instances from ‘Test.HUnit’ To import instances alone, use: import Test.HUnit() | 41 | import Test.HUnit ((~:),(~=?),Test,test) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:43:1: warning: [-Wunused-imports] The qualified import of ‘Data.GraphViz’ is redundant except perhaps to import instances from ‘Data.GraphViz’ To import instances alone, use: import Data.GraphViz() | 43 | import qualified Data.GraphViz as Gv | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:47:1: warning: [-Wunused-imports] The import of ‘Data.GraphViz.Printing’ is redundant except perhaps to import instances from ‘Data.GraphViz.Printing’ To import instances alone, use: import Data.GraphViz.Printing() | 47 | import Data.GraphViz.Printing (renderDot) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:52:1: warning: [-Wunused-imports] The import of ‘viewNewickTree’ from module ‘Bio.Phylogeny.PhyBin.Visualize’ is redundant | 52 | import Bio.Phylogeny.PhyBin.Visualize (dotToPDF, dotNewickTree, viewNewickTree, dotDendrogram) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:120:3: warning: [-Wtabs] Tab character found here, and in 25 further locations. Please use spaces instead. | 120 | if reg | ^^^^^^ [ 9 of 10] Compiling Paths_phybin ( dist-ghc/build/phybin/autogen/Paths_phybin.hs, dist-ghc/build/phybin/phybin-tmp/Paths_phybin.o ) [10 of 10] Compiling Main ( Main.hs, dist-ghc/build/phybin/phybin-tmp/Main.o ) Main.hs:151:1: warning: [-Wtabs] Tab character found here, and in 66 further locations. Please use spaces instead. | 151 | "Leaf names in the input Newick trees can be gene names, not taxa.\n"++ | ^^^^^^^^ Main.hs:263:14: warning: accepting non-standard pattern guards (use PatternGuards to suppress this message) Expected _ <- num_taxa cfg | 263 | | Expected _ <- num_taxa cfg -> error "should not set --numtaxa AND --tolerant" | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ : warning: [-Wmissing-home-modules] These modules are needed for compilation but not listed in your .cabal file's other-modules: Bio.Phylogeny.PhyBin Bio.Phylogeny.PhyBin.Binning Bio.Phylogeny.PhyBin.CoreTypes Bio.Phylogeny.PhyBin.Parser Bio.Phylogeny.PhyBin.PreProcessor Bio.Phylogeny.PhyBin.RFDistance Bio.Phylogeny.PhyBin.Util Bio.Phylogeny.PhyBin.Visualize Paths_phybin Linking dist-ghc/build/phybin/phybin ... touch build-ghc-stamp fakeroot debian/rules binary test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "." CDBS WARNING: DEB_DH_STRIP_ARGS is deprecated since 0.4.85 CDBS WARNING: DEB_COMPRESS_EXCLUDE is deprecated since 0.4.85 Adding cdbs dependencies to debian/phybin.substvars dh_installdirs -pphybin \ dh_haskell_blurbs "ghc" -pphybin debian/hlibrary.setup copy --builddir=dist-ghc --destdir=debian/tmp-inst-ghc Running Setup.hs ... Installing library in debian/tmp-inst-ghc/usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-8.6.5/phybin-0.3-DNqARF3AU0I462TSoTIPXZ Installing executable phybin in debian/tmp-inst-ghc/usr/bin Warning: The directory debian/tmp-inst-ghc/usr/bin is not in the system search path. dh_install -pphybin dist-ghc/build/phybin/phybin usr/bin dh_installdocs -pphybin dh_installexamples -pphybin dh_installman -pphybin dh_installinfo -pphybin dh_installmenu -pphybin dh_installcron -pphybin dh_systemd_enable -pphybin dh_installinit -pphybin dh_installdebconf -pphybin dh_installemacsen -pphybin dh_installcatalogs -pphybin dh_installpam -pphybin dh_installlogrotate -pphybin dh_installlogcheck -pphybin dh_installchangelogs -pphybin dh_installudev -pphybin dh_lintian -pphybin dh_bugfiles -pphybin dh_install -pphybin dh_systemd_start -pphybin dh_link -pphybin dh_buildinfo -pphybin dh_installmime -pphybin dh_installgsettings -pphybin dh_strip -pphybin --no-automatic-dbgsym dh_strip_nondeterminism -pphybin dh_compress -pphybin -X .haddock -X .hs -X .txt dh_fixperms -pphybin dh_makeshlibs -pphybin -XlibHS dh_installdeb -pphybin dh_perl -pphybin dh_shlibdeps -pphybin -- --ignore-missing-info dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/phybin/usr/bin/phybin was not linked against libutil.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/phybin/usr/bin/phybin was not linked against libatomic.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/phybin/usr/bin/phybin was not linked against librt.so.1 (it uses none of the library's symbols) dh_gencontrol -pphybin dpkg-gencontrol: warning: Depends field of package phybin: substitution variable ${haskell:Depends} used, but is not defined dpkg-gencontrol: warning: Recommends field of package phybin: substitution variable ${haskell:Recommends} used, but is not defined dpkg-gencontrol: warning: Suggests field of package phybin: substitution variable ${haskell:Suggests} used, but is not defined dpkg-gencontrol: warning: Conflicts field of package phybin: substitution variable ${haskell:Conflicts} used, but is not defined dpkg-gencontrol: warning: Provides field of package phybin: substitution variable ${haskell:Provides} used, but is not defined dpkg-gencontrol: warning: package phybin: substitution variable ${haskell:ghc-version} unused, but is defined # only call dh_scour for packages in main if grep -q '^Component:[[:space:]]*main' /CurrentlyBuilding 2>/dev/null; then dh_scour -pphybin ; fi dh_md5sums -pphybin dh_builddeb -pphybin INFO: pkgstriptranslations version 144 pkgstriptranslations: processing phybin (in debian/phybin); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/phybin/DEBIAN/control, package phybin, directory debian/phybin .. removing usr/share/doc/phybin/buildinfo_amd64.gz pkgstripfiles: Running PNG optimization (using 4 cpus) for package phybin ... pkgstripfiles: No PNG files. dpkg-deb: building package 'phybin' in '../phybin_0.3-3build1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../phybin_0.3-3build1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20190907-1546 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ phybin_0.3-3build1_amd64.changes: --------------------------------- Format: 1.8 Date: Sat, 07 Sep 2019 17:41:30 +0200 Source: phybin Binary: phybin Architecture: amd64 Version: 0.3-3build1 Distribution: eoan-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Gianfranco Costamagna Description: phybin - binning/clustering newick trees by topology Changes: phybin (0.3-3build1) eoan; urgency=medium . * Rebuild against new GHC abi. Checksums-Sha1: db24e045dd9726a5582abcb0392ef1012d4470ae 9133 phybin_0.3-3build1_amd64.buildinfo b94472e66352a86730c9b6759877b3621c9e1df3 1611896 phybin_0.3-3build1_amd64.deb Checksums-Sha256: 1766fd055cb327bef20347746b14a08a3cdbde4d7622e7f439ccd7153cef150e 9133 phybin_0.3-3build1_amd64.buildinfo b406961aafe1f79f6a0dede593c18cfb9ac7ac4b8c7c804a2e6c63496887f924 1611896 phybin_0.3-3build1_amd64.deb Files: 7b2ba4796d6ec3fd35b5a5479c1447a2 9133 science optional phybin_0.3-3build1_amd64.buildinfo 41d6568c73d6cdb85b72125fb780774f 1611896 science optional phybin_0.3-3build1_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ phybin_0.3-3build1_amd64.deb ---------------------------- new debian package, version 2.0. size 1611896 bytes: control archive=1040 bytes. 999 bytes, 21 lines control 323 bytes, 5 lines md5sums Package: phybin Version: 0.3-3build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 11805 Depends: libatomic1 (>= 4.8), libc6 (>= 2.29), libffi6 (>= 3.0.4), libgmp10 Section: science Priority: optional Homepage: http://www.cs.indiana.edu/~rrnewton/projects/phybin/ Description: binning/clustering newick trees by topology PhyBin is a simple command line tool that classifies a set of Newick tree files by their topology. The purpose of it is to take a large set of tree files and browse through the most common tree topologies. . It can do simple binning of identical trees or more complex clustering based on an all-to-all Robinson-Foulds distance matrix. . phybin produces output files that characterize the size and contents of each bin or cluster (including generating GraphViz-based visual representations of the tree topologies). drwxr-xr-x root/root 0 2019-09-07 15:41 ./ drwxr-xr-x root/root 0 2019-09-07 15:41 ./usr/ drwxr-xr-x root/root 0 2019-09-07 15:41 ./usr/bin/ -rwxr-xr-x root/root 12062904 2019-09-07 15:41 ./usr/bin/phybin drwxr-xr-x root/root 0 2019-09-07 15:41 ./usr/share/ drwxr-xr-x root/root 0 2019-09-07 15:41 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-09-07 15:41 ./usr/share/doc/phybin/ -rw-r--r-- root/root 450 2019-09-07 15:41 ./usr/share/doc/phybin/changelog.Debian.gz -rw-r--r-- root/root 2692 2018-12-19 20:52 ./usr/share/doc/phybin/copyright drwxr-xr-x root/root 0 2019-09-07 15:41 ./usr/share/lintian/ drwxr-xr-x root/root 0 2019-09-07 15:41 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 30 2018-12-19 20:52 ./usr/share/lintian/overrides/phybin drwxr-xr-x root/root 0 2019-09-07 15:41 ./usr/share/man/ drwxr-xr-x root/root 0 2019-09-07 15:41 ./usr/share/man/man1/ -rw-r--r-- root/root 2293 2019-09-07 15:41 ./usr/share/man/man1/phybin.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 84808 Build-Time: 71 Distribution: eoan-proposed Host Architecture: amd64 Install-Time: 26 Job: phybin_0.3-3build1.dsc Machine Architecture: amd64 Package: phybin Package-Time: 98 Source-Version: 0.3-3build1 Space: 84808 Status: successful Version: 0.3-3build1 -------------------------------------------------------------------------------- Finished at 20190907-1546 Build needed 00:01:38, 84808k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=eoan --arch=amd64 PACKAGEBUILD-17736190 Scanning for processes to kill in build PACKAGEBUILD-17736190