I: using fakeroot in build. pbuilder-buildpackage/i386 $Id: pbuilder-buildpackage-funcs,v 1.28 2005/12/21 11:57:29 dancer Exp $ $Id: pbuilder-buildpackage,v 1.120 2006/01/06 12:30:51 dancer Exp $ Current time: Sat Mar 4 10:10:45 CST 2006 pbuilder-time-stamp: 1141488645 Building the build Environment -> extracting base tarball [/var/cache/pbuilder/base.tgz] -> creating local configuration -> copying local configuration -> mounting /proc filesystem ln: creating symbolic link `/var/cache/pbuilder/build//4030/etc/mtab' to `../proc/mounts': File exists -> mounting /dev/pts filesystem -> policy-rc.d already exists -> created buildresult dir :/home/bmontgom/projects/uvf/petsc/result Obtaining the cached apt archive contents Installing the build-deps -> Attempting to parse the build-deps : pbuilder-satisfydepends,v 1.22 2005/12/04 05:16:40 dancer Exp $ -> Considering debhelper (>= 3.0) -> Trying debhelper -> Considering tcsh | c-shell -> Trying tcsh -> Considering python (>= 2.2) -> Trying python -> Considering libmpich1.0-dev (>= 1.2.7) | libmpich-dev -> Trying libmpich1.0-dev -> Considering refblas3-dev | libblas-3.so | cxml -> Trying refblas3-dev -> Considering lapack3-dev | liblapack-3.so | cxml -> Trying lapack3-dev -> Considering g77 | fortran-compiler -> Trying g77 -> Considering libx11-dev -> Trying libx11-dev -> Installing debhelper tcsh python libmpich1.0-dev refblas3-dev lapack3-dev g77 libx11-dev Reading package lists... Building dependency tree... python is already the newest version. The following extra packages will be installed: cpp-3.4 debconf-utils dmidecode file g77-3.4 gcc-3.4 gcc-3.4-base gettext html2text intltool-debian lapack3 laptop-detect libg2c0 libg2c0-dev libmagic1 libmpich1.0c2 libx11-6 libxau-dev libxau6 libxdmcp-dev libxdmcp6 po-debconf refblas3 x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev Suggested packages: dh-make g77-doc g77-3.4-doc gcc-3.4-doc libc6-dev-amd64 lib64gcc1 cvs gettext-doc mpi-doc mpich-bin Recommended packages: curl wget lynx libmail-sendmail-perl libcompress-zlib-perl The following NEW packages will be installed: cpp-3.4 debconf-utils debhelper dmidecode file g77 g77-3.4 gcc-3.4 gcc-3.4-base gettext html2text intltool-debian lapack3 lapack3-dev laptop-detect libg2c0 libg2c0-dev libmagic1 libmpich1.0-dev libmpich1.0c2 libx11-6 libx11-dev libxau-dev libxau6 libxdmcp-dev libxdmcp6 po-debconf refblas3 refblas3-dev tcsh x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev 0 upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 0B/16.0MB of archives. After unpacking 54.5MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! dmidecode laptop-detect x11-common libxau6 libx11-6 x11proto-core-dev x11proto-kb-dev x11proto-input-dev libxau-dev libxdmcp6 libxdmcp-dev libx11-dev libmagic1 file gcc-3.4-base cpp-3.4 debconf-utils html2text gettext intltool-debian po-debconf debhelper gcc-3.4 libg2c0 libg2c0-dev g77-3.4 g77 refblas3 lapack3 refblas3-dev lapack3-dev tcsh libmpich1.0c2 libmpich1.0-dev Extracting templates from packages: 88% Extracting templates from packages: 100% Preconfiguring packages ... /tmp/x11-common.config.51731: line 28: laptop-detect: command not found Authentication warning overridden. Selecting previously deselected package dmidecode. (Reading database ... 13129 files and directories currently installed.) Unpacking dmidecode (from .../dmidecode_2.7-2_i386.deb) ... Selecting previously deselected package laptop-detect. Unpacking laptop-detect (from .../laptop-detect_0.12.1-ubuntu1_i386.deb) ... Selecting previously deselected package x11-common. Unpacking x11-common (from .../x11-common_7.0.0-0ubuntu17_i386.deb) ... Selecting previously deselected package libxau6. Unpacking libxau6 (from .../libxau6_1%3a1.0.0-0ubuntu3_i386.deb) ... Setting up dmidecode (2.7-2) ... Setting up laptop-detect (0.12.1-ubuntu1) ... Setting up x11-common (7.0.0-0ubuntu17) ... Selecting previously deselected package libx11-6. (Reading database ... 13165 files and directories currently installed.) Unpacking libx11-6 (from .../libx11-6_2%3a1.0.0-0ubuntu3_i386.deb) ... Selecting previously deselected package x11proto-core-dev. Unpacking x11proto-core-dev (from .../x11proto-core-dev_7.0.4-0ubuntu2_all.deb) ... Selecting previously deselected package x11proto-kb-dev. Unpacking x11proto-kb-dev (from .../x11proto-kb-dev_1.0.2-0ubuntu2_all.deb) ... Selecting previously deselected package x11proto-input-dev. Unpacking x11proto-input-dev (from .../x11proto-input-dev_1.3.2-0ubuntu2_all.deb) ... Selecting previously deselected package libxau-dev. Unpacking libxau-dev (from .../libxau-dev_1%3a1.0.0-0ubuntu3_i386.deb) ... Selecting previously deselected package libxdmcp6. Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.0.0-0ubuntu2_i386.deb) ... Selecting previously deselected package libxdmcp-dev. Unpacking libxdmcp-dev (from .../libxdmcp-dev_1%3a1.0.0-0ubuntu2_i386.deb) ... Selecting previously deselected package libx11-dev. Unpacking libx11-dev (from .../libx11-dev_2%3a1.0.0-0ubuntu3_i386.deb) ... Selecting previously deselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_4.16-0ubuntu3_i386.deb) ... Selecting previously deselected package file. Unpacking file (from .../file_4.16-0ubuntu3_i386.deb) ... Selecting previously deselected package gcc-3.4-base. Unpacking gcc-3.4-base (from .../gcc-3.4-base_3.4.5-1ubuntu5_i386.deb) ... Selecting previously deselected package cpp-3.4. Unpacking cpp-3.4 (from .../cpp-3.4_3.4.5-1ubuntu5_i386.deb) ... Selecting previously deselected package debconf-utils. Unpacking debconf-utils (from .../debconf-utils_1.4.70ubuntu2_all.deb) ... Selecting previously deselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-3_i386.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.14.5-2ubuntu3_i386.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.34.1+20050828_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_0.9.2_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_5.0.7ubuntu4_all.deb) ... Selecting previously deselected package gcc-3.4. Unpacking gcc-3.4 (from .../gcc-3.4_3.4.5-1ubuntu5_i386.deb) ... Selecting previously deselected package libg2c0. Unpacking libg2c0 (from .../libg2c0_1%3a3.4.5-1ubuntu5_i386.deb) ... Selecting previously deselected package libg2c0-dev. Unpacking libg2c0-dev (from .../libg2c0-dev_1%3a3.4.5-1ubuntu5_i386.deb) ... Selecting previously deselected package g77-3.4. Unpacking g77-3.4 (from .../g77-3.4_3.4.5-1ubuntu5_i386.deb) ... Selecting previously deselected package g77. Unpacking g77 (from .../g77_4%3a3.4.5-2_i386.deb) ... Selecting previously deselected package refblas3. Unpacking refblas3 (from .../refblas3_1.2-8ubuntu1_i386.deb) ... Selecting previously deselected package lapack3. Unpacking lapack3 (from .../lapack3_3.0.20000531a-6ubuntu2_i386.deb) ... Selecting previously deselected package refblas3-dev. Unpacking refblas3-dev (from .../refblas3-dev_1.2-8ubuntu1_i386.deb) ... Selecting previously deselected package lapack3-dev. Unpacking lapack3-dev (from .../lapack3-dev_3.0.20000531a-6ubuntu2_i386.deb) ... Selecting previously deselected package tcsh. Unpacking tcsh (from .../tcsh_6.14.00-2_i386.deb) ... Selecting previously deselected package libmpich1.0c2. Unpacking libmpich1.0c2 (from .../libmpich1.0c2_1.2.7-1_i386.deb) ... Selecting previously deselected package libmpich1.0-dev. Unpacking libmpich1.0-dev (from .../libmpich1.0-dev_1.2.7-1_i386.deb) ... Setting up libxau6 (1.0.0-0ubuntu3) ... Setting up libx11-6 (1.0.0-0ubuntu3) ... Setting up x11proto-core-dev (7.0.4-0ubuntu2) ... Setting up x11proto-kb-dev (1.0.2-0ubuntu2) ... Setting up x11proto-input-dev (1.3.2-0ubuntu2) ... Setting up libxau-dev (1.0.0-0ubuntu3) ... Setting up libxdmcp6 (1.0.0-0ubuntu2) ... Setting up libxdmcp-dev (1.0.0-0ubuntu2) ... Setting up libx11-dev (1.0.0-0ubuntu3) ... Setting up libmagic1 (4.16-0ubuntu3) ... Setting up file (4.16-0ubuntu3) ... Setting up gcc-3.4-base (3.4.5-1ubuntu5) ... Setting up cpp-3.4 (3.4.5-1ubuntu5) ... Setting up debconf-utils (1.4.70ubuntu2) ... Setting up html2text (1.3.2a-3) ... Setting up gettext (0.14.5-2ubuntu3) ... Setting up intltool-debian (0.34.1+20050828) ... Setting up po-debconf (0.9.2) ... Setting up debhelper (5.0.7ubuntu4) ... Setting up gcc-3.4 (3.4.5-1ubuntu5) ... Setting up libg2c0 (3.4.5-1ubuntu5) ... Setting up libg2c0-dev (3.4.5-1ubuntu5) ... Setting up g77-3.4 (3.4.5-1ubuntu5) ... Setting up g77 (3.4.5-2) ... Setting up refblas3 (1.2-8ubuntu1) ... Setting up lapack3 (3.0.20000531a-6ubuntu2) ... Setting up refblas3-dev (1.2-8ubuntu1) ... Setting up lapack3-dev (3.0.20000531a-6ubuntu2) ... Setting up tcsh (6.14.00-2) ... Setting up libmpich1.0c2 (1.2.7-1) ... Setting up libmpich1.0-dev (1.2.7-1) ... -> Finished parsing the build-deps Reading package lists... Building dependency tree... The following NEW packages will be installed: fakeroot 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0B/93.8kB of archives. After unpacking 385kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! fakeroot Authentication warning overridden. Selecting previously deselected package fakeroot. (Reading database ... 14957 files and directories currently installed.) Unpacking fakeroot (from .../fakeroot_1.5.6ubuntu1_i386.deb) ... Setting up fakeroot (1.5.6ubuntu1) ... Copying back the cached apt archive contents /var/cache/pbuilder/build/4030/etc/passwd /var/cache/pbuilder/build/4030/etc/group Copying source file -> copying [petsc_2.3.0-3.dsc] -> copying [./petsc_2.3.0.orig.tar.gz] -> copying [./petsc_2.3.0-3.diff.gz] Extracting source su: Authentication service cannot retrieve authentication info. (Ignored) dpkg-source: warning: no utmp entry available and LOGNAME not defined; using uid of process (1234) dpkg-source: extracting petsc in petsc-2.3.0 dpkg-source: unpacking petsc_2.3.0.orig.tar.gz dpkg-source: applying ./petsc_2.3.0-3.diff.gz -> Building the package su: Authentication service cannot retrieve authentication info. (Ignored) dpkg-parsechangelog: warning: no utmp entry available and LOGNAME not defined; using uid of process (1234) debian: warning: no utmp entry available and LOGNAME not defined; using uid of process (1234) dpkg-buildpackage: source package is petsc dpkg-parsechangelog: warning: no utmp entry available and LOGNAME not defined; using uid of process (1234) debian: warning: no utmp entry available and LOGNAME not defined; using uid of process (1234) dpkg-buildpackage: source version is 2.3.0-3 dpkg-parsechangelog: warning: no utmp entry available and LOGNAME not defined; using uid of process (1234) debian: warning: no utmp entry available and LOGNAME not defined; using uid of process (1234) dpkg-buildpackage: source changed by Adam C. Powell, IV dpkg-architecture: warning: no utmp entry available and LOGNAME not defined; using uid of process (1234) dpkg-architecture: warning: no utmp entry available and LOGNAME not defined; using uid of process (1234) dpkg-buildpackage: host architecture i386 dpkg-checkbuilddeps: warning: no utmp entry available and LOGNAME not defined; using uid of process (1234) dpkg-architecture: warning: no utmp entry available and LOGNAME not defined; using uid of process (1234) dpkg-architecture: warning: no utmp entry available and LOGNAME not defined; using uid of process (1234) fakeroot debian/rules clean dh_testdir if [ -e patch ]; then \ debian/rules unpatch; \ fi mv TAGS thetags dh_clean dh_clean: Compatibility levels before 4 are deprecated. # These are needed for -lam, -dec and -contrib builds rm -rf debian/libpetsc2.3.0 debian/libpetsc2.3.0-dev \ debian/libpetsc2.3.0-dbg mv thetags TAGS rm -f build* install* debian/*.substvars debian/libpetsc2.3.0-dev.docs debian/libpetsc2.3.0-dev.postinst debian/libpetsc2.3.0-dev.prerm # This is commented because it really doesn't do anything useful for us # (removes example executables, so what?) # make PETSC_ARCH=linux-gnu PETSC_DIR=/tmp/buildd/petsc-2.3.0 clean # These probably should be removed by `make clean' but aren't rm -rf `find . -name \*.o -print` lib debian/extemp dpkg-source -b petsc-2.3.0 dpkg-source: warning: no utmp entry available and LOGNAME not defined; using uid of process (1234) dpkg-parsechangelog: warning: no utmp entry available and LOGNAME not defined; using uid of process (1234) debian: warning: no utmp entry available and LOGNAME not defined; using uid of process (1234) dpkg-source: building petsc using existing petsc_2.3.0.orig.tar.gz dpkg-source: building petsc in petsc_2.3.0-3.diff.gz dpkg-source: building petsc in petsc_2.3.0-3.dsc debian/rules build for patchfile in `ls debian/patch-*`; do \ patch -p1 < $patchfile; \ done patching file bmake/common/rules.shared.basic patching file python/PETSc/utilities/debugging.py patching file python/BuildSystem/config/setCompilers.py patching file docs/bugreporting.html patching file docs/faq.html patching file docs/index.html patching file src/sys/src/dll/makefile patching file src/sys/src/fileio/makefile patching file src/sys/src/objects/makefile patching file src/sys/src/utils/makefile patching file bin/mpirun.lam touch patch PETSC_DIR=/tmp/buildd/petsc-2.3.0 ./config/configure.py \ --with-cc=gcc --with-fc=g77 --with-debugging=1 \ --with-mpi-dir=/usr/lib/mpich \ --with-blas-lib=-lblas-3 --with-lapack-lib=-llapack-3 ================================================================================= Configuring PETSc to compile on your system ================================================================================= TESTING: configureLibrary from PETSc.packages.PVODE(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/PVODE.py:10) TESTING: configureLibrary from PETSc.packages.Triangle(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/Triangle.py:10) TESTING: configureLibrary from PETSc.packages.PLAPACK(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/PLAPACK.py:10) TESTING: configureLibrary from PETSc.packages.NetCDF(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/NetCDF.py:10) TESTING: configureDebuggers from PETSc.utilities.debuggers(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/debuggers.py:22) TESTING: configureBitKeeper from config.sourceControl(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/sourceControl.py:23) TESTING: configureCVS from config.sourceControl(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/sourceControl.py:28) TESTING: configureSubversion from config.sourceControl(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/sourceControl.py:33) TESTING: configureMkdir from PETSc.utilities.programs(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/programs.py:21) TESTING: configurePrograms from PETSc.utilities.programs(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/programs.py:39) TESTING: configureMake from PETSc.utilities.Make(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/Make.py:21) TESTING: configureDebugging from PETSc.utilities.debugging(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/debugging.py:22) TESTING: configureDirectories from PETSc.utilities.arch(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/arch.py:42) TESTING: configureArchitecture from PETSc.utilities.arch(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/arch.py:82) TESTING: configureBmakeDir from PETSc.utilities.bmakeDir(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/bmakeDir.py:25) TESTING: configureETags from PETSc.utilities.Etags(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/Etags.py:26) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/sharedLibraries.py:24) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/dataFilesPath.py:28) TESTING: configureScalarType from PETSc.utilities.languages(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/languages.py:29) TESTING: configurePrecision from PETSc.utilities.languages(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/languages.py:40) TESTING: configureCLanguage from PETSc.utilities.languages(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/languages.py:52) TESTING: configureFortranLanguage from PETSc.utilities.languages(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/languages.py:62) TESTING: configurePythonLanguage from PETSc.utilities.languages(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/languages.py:105) TESTING: configureExternC from PETSc.utilities.languages(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/languages.py:122) TESTING: checkInitialLibraries from config.setCompilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/setCompilers.py:68) TESTING: checkCCompiler from config.setCompilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/setCompilers.py:183) TESTING: checkCPreprocessor from config.setCompilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/setCompilers.py:229) TESTING: checkCxxCompiler from config.setCompilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/setCompilers.py:324) TESTING: checkFortranCompiler from config.setCompilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/setCompilers.py:466) TESTING: checkFortranComments from config.setCompilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/setCompilers.py:501) TESTING: checkPIC from config.setCompilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/setCompilers.py:509) TESTING: checkArchiver from config.setCompilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/setCompilers.py:597) TESTING: checkSharedLinker from config.setCompilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/setCompilers.py:687) TESTING: checkLinkerMac from config.setCompilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/setCompilers.py:724) TESTING: checkSharedLinkerPaths from config.setCompilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/setCompilers.py:745) TESTING: output from config.setCompilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/setCompilers.py:772) TESTING: configureCompilerFlags from PETSc.utilities.compilerFlags(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/compilerFlags.py:35) TESTING: checkCRestrict from config.compilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/compilers.py:104) TESTING: checkCFormatting from config.compilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/compilers.py:123) TESTING: checkCStaticInline from config.compilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/compilers.py:77) TESTING: checkFortranTypeSizes from config.compilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/compilers.py:251) TESTING: checkFortranNameMangling from config.compilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/compilers.py:308) TESTING: checkFortranNameManglingDouble from config.compilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/compilers.py:327) TESTING: checkFortranPreprocessor from config.compilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/compilers.py:336) TESTING: checkFortranLibraries from config.compilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/compilers.py:358) TESTING: checkFortran90 from config.compilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/compilers.py:630) TESTING: checkFortran90Interface from config.compilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/compilers.py:690) TESTING: output from config.compilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/compilers.py:715) TESTING: configureLibrary from PETSc.packages.Mathematica(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/Mathematica.py:14) TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/fortranCPP.py:25) TESTING: checkStdC from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:54) TESTING: checkStat from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:87) TESTING: checkSysWait from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:122) TESTING: checkTime from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:144) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: checkRecursiveMacros from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:152) TESTING: check from config.libraries(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/libraries.py:51) TESTING: check from config.libraries(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/libraries.py:51) TESTING: checkMath from config.libraries(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/libraries.py:102) TESTING: checkDynamic from config.libraries(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/libraries.py:111) TESTING: configureLibraryOptions from PETSc.utilities.libraryOptions(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/libraryOptions.py:30) TESTING: alternateConfigureLibrary from PETSc.packages.PARTY(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: alternateConfigureLibrary from PETSc.packages.Chaco(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: alternateConfigureLibrary from PETSc.packages.Matlab(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: configureLibrary from PETSc.packages.BlasLapack(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/BlasLapack.py:330) TESTING: checkLib from PETSc.packages.BlasLapack(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/BlasLapack.py:99) TESTING: checkESSL from PETSc.packages.BlasLapack(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/BlasLapack.py:366) TESTING: checkMissing from PETSc.packages.BlasLapack(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/BlasLapack.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: alternateConfigureLibrary from PETSc.packages.UMFPACK(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: configureLibrary from PETSc.packages.X11(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/X11.py:89) TESTING: configureDynamicLibraries from PETSc.utilities.dynamicLibraries(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/dynamicLibraries.py:30) TESTING: checkMemcmp from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:74) TESTING: checkSysinfo from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:95) TESTING: checkVPrintf from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:118) TESTING: checkFreeReturnType from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:135) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: configureFPTrap from PETSc.utilities.FPTrap(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/FPTrap.py:26) TESTING: configureMissingDefines from PETSc.utilities.missing(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/missing.py:33) TESTING: configureMissingFunctions from PETSc.utilities.missing(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/missing.py:43) TESTING: configureMissingSignals from PETSc.utilities.missing(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/missing.py:63) TESTING: configureMissingPrototypes from PETSc.utilities.missing(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/missing.py:80) TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/getResidentSetSize.py:30) TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/fortranCommandLine.py:25) TESTING: checkSizeTypes from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:40) TESTING: checkFileTypes from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:45) TESTING: checkPID from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:51) TESTING: checkUID from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:55) TESTING: checkSignal from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:62) TESTING: checkFortranStar from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:98) TESTING: checkFortranDReal from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:107) TESTING: checkConst from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:115) TESTING: checkEndian from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:171) TESTING: checkSizeof from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:224) TESTING: checkSizeof from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:224) TESTING: checkSizeof from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:224) TESTING: checkSizeof from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:224) TESTING: checkSizeof from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:224) TESTING: checkSizeof from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:224) TESTING: checkSizeof from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:224) TESTING: checkBitsPerByte from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:259) TESTING: configureLibrary from PETSc.packages.MPI(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/MPI.py:396) TESTING: check from config.libraries(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/libraries.py:51) TESTING: check from config.libraries(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/libraries.py:51) TESTING: check from config.libraries(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/libraries.py:51) TESTING: check from config.libraries(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/libraries.py:51) TESTING: check from config.libraries(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/libraries.py:51) TESTING: check from config.libraries(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/libraries.py:51) TESTING: checkInclude from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:41) TESTING: configureMPICHShared from PETSc.packages.MPI(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/MPI.py:197) TESTING: configureMPIRUN from PETSc.packages.MPI(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/MPI.py:111) TESTING: configureConversion from PETSc.packages.MPI(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/MPI.py:140) TESTING: configureTypes from PETSc.packages.MPI(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/MPI.py:160) TESTING: configureMissingPrototypes from PETSc.packages.MPI(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/MPI.py:187) TESTING: alternateConfigureLibrary from PETSc.packages.hypre(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: alternateConfigureLibrary from PETSc.packages.spai(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: alternateConfigureLibrary from PETSc.packages.ml(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: alternateConfigureLibrary from PETSc.packages.ParMetis(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: alternateConfigureLibrary from PETSc.packages.Prometheus(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: alternateConfigureLibrary from PETSc.packages.blacs(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: alternateConfigureLibrary from PETSc.packages.SCALAPACK(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: alternateConfigureLibrary from PETSc.packages.MUMPS(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: alternateConfigureLibrary from PETSc.packages.spooles(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: configureRegression from PETSc.utilities.Regression(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/Regression.py:29) TESTING: configureInline from PETSc.Configure(/tmp/buildd/petsc-2.3.0/python/PETSc/Configure.py:176) TESTING: configureSolaris from PETSc.Configure(/tmp/buildd/petsc-2.3.0/python/PETSc/Configure.py:184) TESTING: configureLinux from PETSc.Configure(/tmp/buildd/petsc-2.3.0/python/PETSc/Configure.py:198) TESTING: configureWin32 from PETSc.Configure(/tmp/buildd/petsc-2.3.0/python/PETSc/Configure.py:204) TESTING: configureDefaults from PETSc.Configure(/tmp/buildd/petsc-2.3.0/python/PETSc/Configure.py:261) TESTING: configureScript from PETSc.Configure(/tmp/buildd/petsc-2.3.0/python/PETSc/Configure.py:272) TESTING: configureInstall from PETSc.Configure(/tmp/buildd/petsc-2.3.0/python/PETSc/Configure.py:298) TESTING: configureGCOV from PETSc.Configure(/tmp/buildd/petsc-2.3.0/python/PETSc/Configure.py:306) Compilers: C Compiler: gcc -Wall -g3 Fortran Compiler: g77 -Wall -g PETSc: ** ** Configure has determined that your PETSC_ARCH must be specified as: ** ** PETSC_ARCH: linux-gnu ** PETSC_DIR: /tmp/buildd/petsc-2.3.0 ** Please make the above changes to your environment or on the command line for make. ** Scalar type:real Clanguage: C MPI: Includes: ['/usr/lib/mpich/include'] Library: ['/usr/lib/mpich/lib/libmpi.a', '/usr/lib/mpich/lib/libmpi++.a', 'libnsl.a', 'librt.a'] BLAS/LAPACK: -llapack-3 -lblas-3 /usr/bin/make PETSC_ARCH=linux-gnu PETSC_DIR=/tmp/buildd/petsc-2.3.0 \ PETSC_INSTALL_DIR=/usr/lib/petscdir/2.3.0 make[1]: Entering directory `/tmp/buildd/petsc-2.3.0' Making directory for library ========================================== See docs/faq.html and docs/bugreporting.html for help with installation problems. Please send EVERYTHING printed out below when reporting problems To subscribe to the PETSc users mailing list, send mail to majordomo@mcs.anl.gov with the message: subscribe petsc-announce ========================================== On Sat Mar 4 16:19:27 UTC 2006 on trinity Machine characteristics: Linux trinity 2.6.15-16-386 #1 PREEMPT Mon Feb 20 16:38:26 UTC 2006 i686 GNU/Linux ----------------------------------------- Using PETSc directory: /tmp/buildd/petsc-2.3.0 Using PETSc arch: linux-gnu ----------------------------------------- PETSC_VERSION_RELEASE 1 PETSC_VERSION_MAJOR 2 PETSC_VERSION_MINOR 3 PETSC_VERSION_SUBMINOR 0 PETSC_VERSION_PATCH 21 PETSC_VERSION_DATE "April, 26, 2005" PETSC_VERSION_PATCH_DATE "June, 21, 2005" ----------------------------------------- Using configuration flags: #define INCLUDED_PETSCCONF_H #define STDC_HEADERS 1 #define PETSC_STATIC_INLINE static inline #define PETSC_DIR_SEPARATOR '/' #define PETSC_PATH_SEPARATOR ':' #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_CONFIGURE_OPTIONS "--with-cc=gcc --with-fc=g77 --with-debugging=1 --with-mpi-dir=/usr/lib/mpich --with-blas-lib=-lblas-3 --with-lapack-lib=-llapack-3 --with-shared=0" #define PETSC_HAVE_MPI 1 #define PETSC_HAVE_BLASLAPACK 1 #define PETSC_CONFIGURE_RUN_TIME "Sat Mar 4 16:19:27 2006" #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_ARCH_NAME "linux-gnu" #define PETSC_ARCH linux #define PETSC_DIR /tmp/buildd/petsc-2.3.0 #define PETSC_USE_EXTERN_CXX #define PETSC_USE_ERRORCHECKING 1 #define PETSC_RESTRICT #define PETSC_C_STATIC_INLINE static inline #define PETSC_PRINTF_FORMAT_CHECK(A,B) __attribute__((format (printf, A, B))) #define PETSC_HAVE_FORTRAN_UNDERSCORE_UNDERSCORE 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_SIZEOF_MPI_COMM 4 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_SIZEOF_VOID_P 4 #define PETSC_RETSIGTYPE void #define PETSC_SIZEOF_LONG 4 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_LINUX_KERNEL_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_STROPTS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETPWUID 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_LIBMPI 1 #define PETSC_HAVE_LIB_LLAPACK_3 1 #define PETSC_HAVE_LIBMPI__ 1 #define PETSC_HAVE_LIBNSL 1 #define PETSC_HAVE_LIBRT 1 #define PETSC_HAVE_LIB_LBLAS_3 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_32BIT_INT 1 #define PETSC_USE_LOG 1 #define PETSC_USE_CTABLE 1 ----------------------------------------- Using include paths: -I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include ------------------------------------------ Using C/C++ compiler: gcc -Wall -g3 C/C++ Compiler version: Using Fortran compiler: g77 -Wall -g Fortran Compiler version: ----------------------------------------- Using C/C++ linker: gcc Using Fortran linker: g77 ----------------------------------------- Using libraries: -force_flat_namespace/tmp/buildd/petsc-2.3.0/lib/linux-gnu -L/tmp/buildd/petsc-2.3.0/lib/linux-gnu -lpetscts -lpetscsnes -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -force_flat_namespace/usr/lib/mpich/lib -L/usr/lib/mpich/lib -lmpi -force_flat_namespace/usr/lib/mpich/lib -L/usr/lib/mpich/lib -lmpi++ -lnsl -lrt -llapack-3 -lblas-3 -lg2c -lm -L/usr/lib/gcc/i486-linux-gnu/3.4.6 -L/usr/lib/gcc/i486-linux-gnu/3.4.6/../../../../lib -L/usr/lib/gcc/i486-linux-gnu/3.4.6/../../.. -L/lib/../lib -L/usr/lib/../lib -lm -lgcc_s ------------------------------------------ Using mpirun: ========================================== /bin/rm -f -f /tmp/buildd/petsc-2.3.0/lib/linux-gnu/lib*.* BEGINNING TO COMPILE LIBRARIES IN ALL DIRECTORIES ========================================= libfast in: /tmp/buildd/petsc-2.3.0/src libfast in: /tmp/buildd/petsc-2.3.0/src/inline libfast in: /tmp/buildd/petsc-2.3.0/src/sys libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src libfast in: 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-I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include fmdot.F g77 -c -Wall -g -I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include fnorm.F g77 -c -Wall -g -I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include fmult.F g77 -c -Wall -g -I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include fmultadd.F g77 -c -Wall -g -I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include fsolve.F g77 -c -Wall -g -I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include fsolvebaij.F g77 -c -Wall -g -I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include sgemv.F g77 -c -Wall -g -I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include frelax.F g77 -c -Wall -g -I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include fwaxpy.F g77 -c -Wall -g -I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include faypx.F g77 -c -Wall -g -I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include fcopy.F /usr/bin/ar cr /tmp/buildd/petsc-2.3.0/lib/linux-gnu/libpetsc.a fmaxpy.o fmdot.o fnorm.o fmult.o fmultadd.o fsolve.o fsolvebaij.o sgemv.o frelax.o fwaxpy.o faypx.o fcopy.o libfast in: /tmp/buildd/petsc-2.3.0/include libfast in: /tmp/buildd/petsc-2.3.0/include/finclude libfast in: /tmp/buildd/petsc-2.3.0/include/f90impl Completed building libraries ========================================= making shared libraries in /tmp/buildd/petsc-2.3.0/lib/linux-gnu building libpetsc. make[3]: Nothing to be done for `shared_arch'. building libpetscvec. make[3]: Nothing to be done for `shared_arch'. building libpetscmat. make[3]: Nothing to be done for `shared_arch'. building libpetscdm. make[3]: Nothing to be done for `shared_arch'. building libpetscksp. make[3]: Nothing to be done for `shared_arch'. building libpetscsnes. make[3]: Nothing to be done for `shared_arch'. building libpetscts. make[3]: Nothing to be done for `shared_arch'. make[1]: Leaving directory `/tmp/buildd/petsc-2.3.0' mv lib/linux-gnu lib/debug PETSC_DIR=/tmp/buildd/petsc-2.3.0 ./config/configure.py --with-shared --with-dynamic\ --with-cc=gcc --with-fc=g77 --with-debugging=0 \ --with-mpi-dir=/usr/lib/mpich --with-mpi-shared=1 \ --with-blas-lib=-lblas-3 --with-lapack-lib=-llapack-3 ================================================================================= Configuring PETSc to compile on your system ================================================================================= TESTING: configureLibrary from PETSc.packages.PVODE(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/PVODE.py:10) TESTING: configureLibrary from PETSc.packages.Triangle(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/Triangle.py:10) TESTING: configureLibrary from PETSc.packages.PLAPACK(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/PLAPACK.py:10) TESTING: configureLibrary from PETSc.packages.NetCDF(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/NetCDF.py:10) TESTING: configureDebuggers from PETSc.utilities.debuggers(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/debuggers.py:22) TESTING: configureBitKeeper from config.sourceControl(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/sourceControl.py:23) TESTING: configureCVS from config.sourceControl(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/sourceControl.py:28) TESTING: configureSubversion from config.sourceControl(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/sourceControl.py:33) TESTING: configureMkdir from PETSc.utilities.programs(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/programs.py:21) TESTING: configurePrograms from PETSc.utilities.programs(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/programs.py:39) TESTING: configureMake from PETSc.utilities.Make(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/Make.py:21) TESTING: configureDebugging from PETSc.utilities.debugging(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/debugging.py:22) TESTING: configureDirectories from PETSc.utilities.arch(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/arch.py:42) TESTING: configureArchitecture from PETSc.utilities.arch(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/arch.py:82) TESTING: configureBmakeDir from PETSc.utilities.bmakeDir(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/bmakeDir.py:25) TESTING: configureETags from PETSc.utilities.Etags(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/Etags.py:26) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/sharedLibraries.py:24) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/dataFilesPath.py:28) TESTING: configureScalarType from PETSc.utilities.languages(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/languages.py:29) TESTING: configurePrecision from PETSc.utilities.languages(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/languages.py:40) TESTING: configureCLanguage from PETSc.utilities.languages(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/languages.py:52) TESTING: configureFortranLanguage from PETSc.utilities.languages(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/languages.py:62) TESTING: configurePythonLanguage from PETSc.utilities.languages(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/languages.py:105) TESTING: configureExternC from PETSc.utilities.languages(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/languages.py:122) TESTING: checkInitialLibraries from config.setCompilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/setCompilers.py:68) TESTING: checkCCompiler from config.setCompilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/setCompilers.py:183) TESTING: checkCPreprocessor from config.setCompilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/setCompilers.py:229) TESTING: checkCxxCompiler from config.setCompilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/setCompilers.py:324) TESTING: checkFortranCompiler from config.setCompilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/setCompilers.py:466) TESTING: checkFortranComments from config.setCompilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/setCompilers.py:501) TESTING: checkPIC from config.setCompilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/setCompilers.py:509) TESTING: checkArchiver from config.setCompilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/setCompilers.py:597) TESTING: checkSharedLinker from config.setCompilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/setCompilers.py:687) TESTING: checkLinkerMac from config.setCompilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/setCompilers.py:724) TESTING: checkSharedLinkerPaths from config.setCompilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/setCompilers.py:745) TESTING: checkLibC from config.setCompilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/setCompilers.py:749) TESTING: output from config.setCompilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/setCompilers.py:772) TESTING: configureCompilerFlags from PETSc.utilities.compilerFlags(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/compilerFlags.py:35) TESTING: checkCRestrict from config.compilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/compilers.py:104) TESTING: checkCFormatting from config.compilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/compilers.py:123) TESTING: checkCStaticInline from config.compilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/compilers.py:77) TESTING: checkFortranTypeSizes from config.compilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/compilers.py:251) TESTING: checkFortranNameMangling from config.compilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/compilers.py:308) TESTING: checkFortranNameManglingDouble from config.compilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/compilers.py:327) TESTING: checkFortranPreprocessor from config.compilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/compilers.py:336) TESTING: checkFortranLibraries from config.compilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/compilers.py:358) TESTING: checkFortran90 from config.compilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/compilers.py:630) TESTING: checkFortran90Interface from config.compilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/compilers.py:690) TESTING: output from config.compilers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/compilers.py:715) TESTING: configureLibrary from PETSc.packages.Mathematica(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/Mathematica.py:14) TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/fortranCPP.py:25) TESTING: checkStdC from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:54) TESTING: checkStat from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:87) TESTING: checkSysWait from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:122) TESTING: checkTime from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:144) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: check from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:32) TESTING: checkRecursiveMacros from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:152) TESTING: check from config.libraries(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/libraries.py:51) TESTING: check from config.libraries(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/libraries.py:51) TESTING: checkMath from config.libraries(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/libraries.py:102) TESTING: checkDynamic from config.libraries(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/libraries.py:111) TESTING: configureLibraryOptions from PETSc.utilities.libraryOptions(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/libraryOptions.py:30) TESTING: alternateConfigureLibrary from PETSc.packages.PARTY(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: alternateConfigureLibrary from PETSc.packages.Chaco(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: alternateConfigureLibrary from PETSc.packages.Matlab(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: configureLibrary from PETSc.packages.BlasLapack(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/BlasLapack.py:330) TESTING: checkLib from PETSc.packages.BlasLapack(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/BlasLapack.py:99) TESTING: checkESSL from PETSc.packages.BlasLapack(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/BlasLapack.py:366) TESTING: checkMissing from PETSc.packages.BlasLapack(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/BlasLapack.py:372) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: alternateConfigureLibrary from PETSc.packages.UMFPACK(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: configureLibrary from PETSc.packages.X11(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/X11.py:89) TESTING: configureDynamicLibraries from PETSc.utilities.dynamicLibraries(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/dynamicLibraries.py:30) TESTING: checkMemcmp from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:74) TESTING: checkSysinfo from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:95) TESTING: checkVPrintf from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:118) TESTING: checkFreeReturnType from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:135) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: check from config.functions(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/functions.py:27) TESTING: configureFPTrap from PETSc.utilities.FPTrap(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/FPTrap.py:26) TESTING: configureMissingDefines from PETSc.utilities.missing(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/missing.py:33) TESTING: configureMissingFunctions from PETSc.utilities.missing(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/missing.py:43) TESTING: configureMissingSignals from PETSc.utilities.missing(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/missing.py:63) TESTING: configureMissingPrototypes from PETSc.utilities.missing(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/missing.py:80) TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/getResidentSetSize.py:30) TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/fortranCommandLine.py:25) TESTING: checkSizeTypes from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:40) TESTING: checkFileTypes from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:45) TESTING: checkPID from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:51) TESTING: checkUID from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:55) TESTING: checkSignal from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:62) TESTING: checkFortranStar from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:98) TESTING: checkFortranDReal from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:107) TESTING: checkConst from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:115) TESTING: checkEndian from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:171) TESTING: checkSizeof from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:224) TESTING: checkSizeof from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:224) TESTING: checkSizeof from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:224) TESTING: checkSizeof from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:224) TESTING: checkSizeof from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:224) TESTING: checkSizeof from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:224) TESTING: checkSizeof from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:224) TESTING: checkBitsPerByte from config.types(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/types.py:259) TESTING: configureLibrary from PETSc.packages.MPI(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/MPI.py:396) TESTING: check from config.libraries(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/libraries.py:51) TESTING: check from config.libraries(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/libraries.py:51) TESTING: check from config.libraries(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/libraries.py:51) TESTING: check from config.libraries(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/libraries.py:51) TESTING: check from config.libraries(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/libraries.py:51) TESTING: check from config.libraries(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/libraries.py:51) TESTING: checkInclude from config.headers(/tmp/buildd/petsc-2.3.0/python/BuildSystem/config/headers.py:41) TESTING: configureMPICHShared from PETSc.packages.MPI(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/MPI.py:197) TESTING: configureMPIRUN from PETSc.packages.MPI(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/MPI.py:111) TESTING: configureConversion from PETSc.packages.MPI(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/MPI.py:140) TESTING: configureTypes from PETSc.packages.MPI(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/MPI.py:160) TESTING: configureMissingPrototypes from PETSc.packages.MPI(/tmp/buildd/petsc-2.3.0/python/PETSc/packages/MPI.py:187) TESTING: alternateConfigureLibrary from PETSc.packages.hypre(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: alternateConfigureLibrary from PETSc.packages.spai(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: alternateConfigureLibrary from PETSc.packages.ml(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: alternateConfigureLibrary from PETSc.packages.ParMetis(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: alternateConfigureLibrary from PETSc.packages.Prometheus(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: alternateConfigureLibrary from PETSc.packages.blacs(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: alternateConfigureLibrary from PETSc.packages.SCALAPACK(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: alternateConfigureLibrary from PETSc.packages.MUMPS(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: alternateConfigureLibrary from PETSc.packages.spooles(/tmp/buildd/petsc-2.3.0/python/PETSc/package.py:317) TESTING: configureRegression from PETSc.utilities.Regression(/tmp/buildd/petsc-2.3.0/python/PETSc/utilities/Regression.py:29) TESTING: configureInline from PETSc.Configure(/tmp/buildd/petsc-2.3.0/python/PETSc/Configure.py:176) TESTING: configureSolaris from PETSc.Configure(/tmp/buildd/petsc-2.3.0/python/PETSc/Configure.py:184) TESTING: configureLinux from PETSc.Configure(/tmp/buildd/petsc-2.3.0/python/PETSc/Configure.py:198) TESTING: configureWin32 from PETSc.Configure(/tmp/buildd/petsc-2.3.0/python/PETSc/Configure.py:204) TESTING: configureDefaults from PETSc.Configure(/tmp/buildd/petsc-2.3.0/python/PETSc/Configure.py:261) TESTING: configureScript from PETSc.Configure(/tmp/buildd/petsc-2.3.0/python/PETSc/Configure.py:272) TESTING: configureInstall from PETSc.Configure(/tmp/buildd/petsc-2.3.0/python/PETSc/Configure.py:298) TESTING: configureGCOV from PETSc.Configure(/tmp/buildd/petsc-2.3.0/python/PETSc/Configure.py:306) Compilers: C Compiler: gcc -fPIC -Wall -O -fomit-frame-pointer -Wno-strict-aliasing Fortran Compiler: g77 -fPIC -Wall -O PETSc: ** ** Configure has determined that your PETSC_ARCH must be specified as: ** ** PETSC_ARCH: linux-gnu ** PETSC_DIR: /tmp/buildd/petsc-2.3.0 ** Please make the above changes to your environment or on the command line for make. ** Scalar type:real Clanguage: C MPI: Includes: ['/usr/lib/mpich/include'] Library: ['/usr/lib/mpich/lib/libmpi.a', '/usr/lib/mpich/lib/libmpi++.a', 'libnsl.a', 'librt.a'] BLAS/LAPACK: -llapack-3 -lblas-3 /usr/bin/make PETSC_ARCH=linux-gnu PETSC_DIR=/tmp/buildd/petsc-2.3.0 \ PETSC_INSTALL_DIR=/usr/lib/petscdir/2.3.0 \ SL_LINKER_SUFFIX_VERSIONED="so.2.3.0" make[1]: Entering directory `/tmp/buildd/petsc-2.3.0' Making directory for library ========================================== See docs/faq.html and docs/bugreporting.html for help with installation problems. Please send EVERYTHING printed out below when reporting problems To subscribe to the PETSc users mailing list, send mail to majordomo@mcs.anl.gov with the message: subscribe petsc-announce ========================================== On Sat Mar 4 16:29:41 UTC 2006 on trinity Machine characteristics: Linux trinity 2.6.15-16-386 #1 PREEMPT Mon Feb 20 16:38:26 UTC 2006 i686 GNU/Linux ----------------------------------------- Using PETSc directory: /tmp/buildd/petsc-2.3.0 Using PETSc arch: linux-gnu ----------------------------------------- PETSC_VERSION_RELEASE 1 PETSC_VERSION_MAJOR 2 PETSC_VERSION_MINOR 3 PETSC_VERSION_SUBMINOR 0 PETSC_VERSION_PATCH 21 PETSC_VERSION_DATE "April, 26, 2005" PETSC_VERSION_PATCH_DATE "June, 21, 2005" ----------------------------------------- Using configuration flags: #define INCLUDED_PETSCCONF_H #define STDC_HEADERS 1 #define PETSC_STATIC_INLINE static inline #define PETSC_DIR_SEPARATOR '/' #define PETSC_PATH_SEPARATOR ':' #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_CONFIGURE_OPTIONS "--with-shared --with-dynamic --with-cc=gcc --with-fc=g77 --with-debugging=0 --with-mpi-dir=/usr/lib/mpich --with-mpi-shared=1 --with-blas-lib=-lblas-3 --with-lapack-lib=-llapack-3" #define PETSC_HAVE_MPI 1 #define PETSC_HAVE_BLASLAPACK 1 #define PETSC_CONFIGURE_RUN_TIME "Sat Mar 4 16:29:40 2006" #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_ARCH_NAME "linux-gnu" #define PETSC_ARCH linux #define PETSC_DIR /tmp/buildd/petsc-2.3.0 #define PETSC_USE_EXTERN_CXX #define PETSC_USE_ERRORCHECKING 1 #define PETSC_RESTRICT #define PETSC_C_STATIC_INLINE static inline #define PETSC_PRINTF_FORMAT_CHECK(A,B) __attribute__((format (printf, A, B))) #define PETSC_HAVE_FORTRAN_UNDERSCORE_UNDERSCORE 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_SIZEOF_MPI_COMM 4 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_SIZEOF_VOID_P 4 #define PETSC_RETSIGTYPE void #define PETSC_SIZEOF_LONG 4 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_LINUX_KERNEL_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_STROPTS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETPWUID 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_LIBMPI 1 #define PETSC_HAVE_LIB_LLAPACK_3 1 #define PETSC_HAVE_LIBMPI__ 1 #define PETSC_HAVE_LIBNSL 1 #define PETSC_HAVE_LIBRT 1 #define PETSC_HAVE_LIB_LBLAS_3 1 #define PETSC_USE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_USE_32BIT_INT 1 #define PETSC_USE_LOG 1 #define PETSC_USE_CTABLE 1 ----------------------------------------- Using include paths: -I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include ------------------------------------------ Using C/C++ compiler: gcc -fPIC -Wall -O -fomit-frame-pointer -Wno-strict-aliasing C/C++ Compiler version: Using Fortran compiler: g77 -fPIC -Wall -O Fortran Compiler version: ----------------------------------------- Using C/C++ linker: gcc Using Fortran linker: g77 ----------------------------------------- Using libraries: -force_flat_namespace/tmp/buildd/petsc-2.3.0/lib/linux-gnu -L/tmp/buildd/petsc-2.3.0/lib/linux-gnu -lpetscts -lpetscsnes -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -force_flat_namespace/usr/lib/mpich/lib -L/usr/lib/mpich/lib -lmpi -force_flat_namespace/usr/lib/mpich/lib -L/usr/lib/mpich/lib -lmpi++ -lnsl -lrt -llapack-3 -lblas-3 -ldl -lg2c -lm -L/usr/lib/gcc/i486-linux-gnu/3.4.6 -L/usr/lib/gcc/i486-linux-gnu/3.4.6/../../../../lib -L/usr/lib/gcc/i486-linux-gnu/3.4.6/../../.. -L/lib/../lib -L/usr/lib/../lib -lm -lgcc_s ------------------------------------------ Using mpirun: ========================================== /bin/rm -f -f /tmp/buildd/petsc-2.3.0/lib/linux-gnu/lib*.* BEGINNING TO COMPILE LIBRARIES IN ALL DIRECTORIES ========================================= libfast in: /tmp/buildd/petsc-2.3.0/src libfast in: /tmp/buildd/petsc-2.3.0/src/inline libfast in: /tmp/buildd/petsc-2.3.0/src/sys libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/viewer libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/viewer/impls libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/viewer/impls/socket libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/viewer/impls/ascii libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/viewer/impls/binary libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/viewer/impls/string libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/viewer/impls/draw libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/viewer/impls/vu libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/viewer/examples libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/viewer/examples/tutorials libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/viewer/examples/tests libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/viewer/interface libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/draw libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/draw/interface libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/draw/impls libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/draw/impls/ps libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/draw/examples libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/draw/examples/tests libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/draw/examples/tutorials libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/draw/utils libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/error libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/dll libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/fileio libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/memory libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/objects libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/objects/ams libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/time libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/utils libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/plog libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/mpiuni libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/adic libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/adic/adic libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/adic/adintrinsics libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/adic/Gradient libfast in: /tmp/buildd/petsc-2.3.0/src/sys/src/bag libfast in: /tmp/buildd/petsc-2.3.0/src/sys/examples libfast in: /tmp/buildd/petsc-2.3.0/src/sys/examples/tests libfast in: /tmp/buildd/petsc-2.3.0/src/sys/examples/tutorials libfast in: /tmp/buildd/petsc-2.3.0/src/vec libfast in: /tmp/buildd/petsc-2.3.0/src/vec/is libfast in: /tmp/buildd/petsc-2.3.0/src/vec/is/interface libfast in: /tmp/buildd/petsc-2.3.0/src/vec/is/impls libfast in: /tmp/buildd/petsc-2.3.0/src/vec/is/impls/general libfast in: /tmp/buildd/petsc-2.3.0/src/vec/is/impls/stride libfast in: /tmp/buildd/petsc-2.3.0/src/vec/is/impls/block libfast in: /tmp/buildd/petsc-2.3.0/src/vec/is/examples libfast in: /tmp/buildd/petsc-2.3.0/src/vec/is/examples/tests libfast in: /tmp/buildd/petsc-2.3.0/src/vec/is/examples/tutorials libfast in: /tmp/buildd/petsc-2.3.0/src/vec/is/utils libfast in: /tmp/buildd/petsc-2.3.0/src/vec/utils libfast in: /tmp/buildd/petsc-2.3.0/src/vec/interface libfast in: /tmp/buildd/petsc-2.3.0/src/vec/impls libfast in: /tmp/buildd/petsc-2.3.0/src/vec/impls/seq libfast in: /tmp/buildd/petsc-2.3.0/src/vec/impls/mpi libfast in: /tmp/buildd/petsc-2.3.0/src/vec/impls/shared libfast in: /tmp/buildd/petsc-2.3.0/src/vec/examples libfast in: /tmp/buildd/petsc-2.3.0/src/vec/examples/tests libfast in: /tmp/buildd/petsc-2.3.0/src/vec/examples/tutorials libfast in: /tmp/buildd/petsc-2.3.0/src/vec/pf libfast in: /tmp/buildd/petsc-2.3.0/src/vec/pf/interface libfast in: /tmp/buildd/petsc-2.3.0/src/vec/pf/impls libfast in: /tmp/buildd/petsc-2.3.0/src/vec/pf/impls/constant libfast in: /tmp/buildd/petsc-2.3.0/src/vec/pf/impls/string libfast in: /tmp/buildd/petsc-2.3.0/src/vec/pf/examples libfast in: /tmp/buildd/petsc-2.3.0/src/vec/pf/examples/tutorials libfast in: /tmp/buildd/petsc-2.3.0/src/mat libfast in: /tmp/buildd/petsc-2.3.0/src/mat/interface libfast in: /tmp/buildd/petsc-2.3.0/src/mat/impls libfast in: /tmp/buildd/petsc-2.3.0/src/mat/impls/dense libfast in: /tmp/buildd/petsc-2.3.0/src/mat/impls/dense/seq libfast in: /tmp/buildd/petsc-2.3.0/src/mat/impls/dense/mpi libfast in: /tmp/buildd/petsc-2.3.0/src/mat/impls/aij libfast in: /tmp/buildd/petsc-2.3.0/src/mat/impls/aij/seq aijfact.c: In function 'MatLUFactorNumeric_SeqAIJ': aijfact.c:431: warning: 'sctx.shift_top' may be used uninitialized in this function aijfact.c:431: warning: 'sctx.nshift_max' may be used uninitialized in this function aijfact.c:431: warning: 'sctx.shift_lo' may be used uninitialized in this function aijfact.c:431: warning: 'sctx.shift_hi' may be used uninitialized in this function libfast in: /tmp/buildd/petsc-2.3.0/src/mat/impls/aij/mpi libfast in: /tmp/buildd/petsc-2.3.0/src/mat/impls/aij/aij libfast in: /tmp/buildd/petsc-2.3.0/src/mat/impls/shell libfast in: /tmp/buildd/petsc-2.3.0/src/mat/impls/bdiag libfast in: /tmp/buildd/petsc-2.3.0/src/mat/impls/bdiag/seq libfast in: /tmp/buildd/petsc-2.3.0/src/mat/impls/bdiag/mpi libfast in: /tmp/buildd/petsc-2.3.0/src/mat/impls/baij libfast in: /tmp/buildd/petsc-2.3.0/src/mat/impls/baij/seq libfast in: /tmp/buildd/petsc-2.3.0/src/mat/impls/baij/mpi libfast in: /tmp/buildd/petsc-2.3.0/src/mat/impls/adj libfast in: /tmp/buildd/petsc-2.3.0/src/mat/impls/adj/mpi libfast in: /tmp/buildd/petsc-2.3.0/src/mat/impls/maij libfast in: /tmp/buildd/petsc-2.3.0/src/mat/impls/is libfast in: /tmp/buildd/petsc-2.3.0/src/mat/impls/sbaij libfast in: /tmp/buildd/petsc-2.3.0/src/mat/impls/sbaij/seq libfast in: /tmp/buildd/petsc-2.3.0/src/mat/impls/sbaij/mpi libfast in: /tmp/buildd/petsc-2.3.0/src/mat/impls/normal libfast in: /tmp/buildd/petsc-2.3.0/src/mat/impls/csr libfast in: /tmp/buildd/petsc-2.3.0/src/mat/impls/csr/inode inode.c: In function 'MatLUFactorNumeric_Inode': inode.c:1153: warning: 'sctx.shift_top' may be used uninitialized in this function inode.c:1153: warning: 'sctx.nshift_max' may be used uninitialized in this function inode.c:1153: warning: 'sctx.shift_hi' may be used uninitialized in this function libfast in: /tmp/buildd/petsc-2.3.0/src/mat/examples libfast in: /tmp/buildd/petsc-2.3.0/src/mat/examples/tests libfast in: /tmp/buildd/petsc-2.3.0/src/mat/examples/tutorials libfast in: /tmp/buildd/petsc-2.3.0/src/mat/utils libfast in: /tmp/buildd/petsc-2.3.0/src/mat/matfd libfast in: /tmp/buildd/petsc-2.3.0/src/mat/partition libfast in: /tmp/buildd/petsc-2.3.0/src/mat/partition/impls libfast in: /tmp/buildd/petsc-2.3.0/src/mat/order libfast in: /tmp/buildd/petsc-2.3.0/src/mat/color libfast in: /tmp/buildd/petsc-2.3.0/src/ksp libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/interface libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/impls libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/impls/jacobi libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/impls/none libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/impls/sor libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/impls/shell libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/impls/bjacobi libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/impls/mg libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/impls/eisens libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/impls/asm libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/impls/ksp libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/impls/composite libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/impls/redundant libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/impls/is libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/impls/is/nn libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/impls/pbjacobi libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/impls/mat libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/impls/tfs libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/impls/fieldsplit libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/impls/factor libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/impls/factor/lu libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/impls/factor/ilu libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/impls/factor/icc libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/impls/factor/cholesky libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/examples libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/examples/tests libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/pc/examples/tutorials libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/ksp libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/ksp/interface libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/ksp/impls libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/ksp/impls/cr libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/ksp/impls/bcgs libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/ksp/impls/bcgsl libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/ksp/impls/cg libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/ksp/impls/cg/cgne libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/ksp/impls/cgs libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/ksp/impls/gmres libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/ksp/impls/gmres/lgmres libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/ksp/impls/gmres/fgmres libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/ksp/impls/cheby libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/ksp/impls/rich libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/ksp/impls/lsqr libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/ksp/impls/preonly libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/ksp/impls/tcqmr libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/ksp/impls/tfqmr libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/ksp/impls/qcg libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/ksp/impls/bicg libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/ksp/impls/minres libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/ksp/impls/symmlq libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/examples libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/examples/tests libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/examples/tutorials libfast in: /tmp/buildd/petsc-2.3.0/src/ksp/utils libfast in: /tmp/buildd/petsc-2.3.0/src/snes libfast in: /tmp/buildd/petsc-2.3.0/src/snes/interface libfast in: /tmp/buildd/petsc-2.3.0/src/snes/interface/noise libfast in: /tmp/buildd/petsc-2.3.0/src/snes/mf libfast in: /tmp/buildd/petsc-2.3.0/src/snes/impls libfast in: /tmp/buildd/petsc-2.3.0/src/snes/impls/ls libfast in: /tmp/buildd/petsc-2.3.0/src/snes/impls/tr libfast in: /tmp/buildd/petsc-2.3.0/src/snes/impls/test libfast in: /tmp/buildd/petsc-2.3.0/src/snes/examples libfast in: /tmp/buildd/petsc-2.3.0/src/snes/examples/tests libfast in: /tmp/buildd/petsc-2.3.0/src/snes/examples/tutorials libfast in: /tmp/buildd/petsc-2.3.0/src/snes/examples/tutorials/ex10d libfast in: /tmp/buildd/petsc-2.3.0/src/snes/utils libfast in: /tmp/buildd/petsc-2.3.0/src/ts libfast in: /tmp/buildd/petsc-2.3.0/src/ts/interface libfast in: /tmp/buildd/petsc-2.3.0/src/ts/impls libfast in: /tmp/buildd/petsc-2.3.0/src/ts/impls/explicit libfast in: /tmp/buildd/petsc-2.3.0/src/ts/impls/explicit/euler libfast in: /tmp/buildd/petsc-2.3.0/src/ts/impls/explicit/rk libfast in: /tmp/buildd/petsc-2.3.0/src/ts/impls/implicit libfast in: /tmp/buildd/petsc-2.3.0/src/ts/impls/implicit/beuler libfast in: /tmp/buildd/petsc-2.3.0/src/ts/impls/implicit/cn libfast in: /tmp/buildd/petsc-2.3.0/src/ts/impls/pseudo libfast in: /tmp/buildd/petsc-2.3.0/src/ts/examples libfast in: /tmp/buildd/petsc-2.3.0/src/ts/examples/tests libfast in: /tmp/buildd/petsc-2.3.0/src/ts/examples/tutorials libfast in: /tmp/buildd/petsc-2.3.0/src/dm libfast in: /tmp/buildd/petsc-2.3.0/src/dm/ao libfast in: /tmp/buildd/petsc-2.3.0/src/dm/ao/interface libfast in: /tmp/buildd/petsc-2.3.0/src/dm/ao/impls libfast in: /tmp/buildd/petsc-2.3.0/src/dm/ao/impls/basic libfast in: /tmp/buildd/petsc-2.3.0/src/dm/ao/impls/mapping libfast in: /tmp/buildd/petsc-2.3.0/src/dm/ao/examples libfast in: /tmp/buildd/petsc-2.3.0/src/dm/ao/examples/tests libfast in: /tmp/buildd/petsc-2.3.0/src/dm/ao/examples/tutorials libfast in: /tmp/buildd/petsc-2.3.0/src/dm/ao/utils libfast in: /tmp/buildd/petsc-2.3.0/src/dm/da libfast in: /tmp/buildd/petsc-2.3.0/src/dm/da/src libfast in: /tmp/buildd/petsc-2.3.0/src/dm/da/examples libfast in: /tmp/buildd/petsc-2.3.0/src/dm/da/examples/tests libfast in: /tmp/buildd/petsc-2.3.0/src/dm/da/examples/tutorials libfast in: /tmp/buildd/petsc-2.3.0/src/dm/da/utils libfast in: /tmp/buildd/petsc-2.3.0/src/dm/usg libfast in: /tmp/buildd/petsc-2.3.0/src/dm/usg/utils libfast in: /tmp/buildd/petsc-2.3.0/src/contrib libfast in: /tmp/buildd/petsc-2.3.0/src/contrib/oberman libfast in: /tmp/buildd/petsc-2.3.0/src/contrib/oberman/laplacian_q1 libfast in: /tmp/buildd/petsc-2.3.0/src/contrib/oberman/laplacian_q1/scalable libfast in: /tmp/buildd/petsc-2.3.0/src/contrib/oberman/burgers_vertex_based_q1 libfast in: /tmp/buildd/petsc-2.3.0/src/contrib/oberman/burgers_df_based_q1 libfast in: /tmp/buildd/petsc-2.3.0/src/contrib/oberman/ns_q1q0 libfast in: /tmp/buildd/petsc-2.3.0/src/contrib/oberman/ns_q2q1 libfast in: /tmp/buildd/petsc-2.3.0/src/benchmarks libfast in: /tmp/buildd/petsc-2.3.0/src/fortran libfast in: /tmp/buildd/petsc-2.3.0/src/fortran/auto libfast in: /tmp/buildd/petsc-2.3.0/src/fortran/custom libfast in: /tmp/buildd/petsc-2.3.0/src/fortran/fsrc g77 -c -fPIC -Wall -O -I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include somefort.F /usr/bin/ar cr /tmp/buildd/petsc-2.3.0/lib/linux-gnu/libpetscfortran.a somefort.o libfast in: /tmp/buildd/petsc-2.3.0/src/fortran/kernels g77 -c -fPIC -Wall -O -I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include fmaxpy.F g77 -c -fPIC -Wall -O -I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include fmdot.F g77 -c -fPIC -Wall -O -I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include fnorm.F g77 -c -fPIC -Wall -O -I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include fmult.F g77 -c -fPIC -Wall -O -I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include fmultadd.F g77 -c -fPIC -Wall -O -I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include fsolve.F g77 -c -fPIC -Wall -O -I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include fsolvebaij.F g77 -c -fPIC -Wall -O -I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include sgemv.F g77 -c -fPIC -Wall -O -I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include frelax.F g77 -c -fPIC -Wall -O -I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include fwaxpy.F g77 -c -fPIC -Wall -O -I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include faypx.F g77 -c -fPIC -Wall -O -I/tmp/buildd/petsc-2.3.0 -I/tmp/buildd/petsc-2.3.0/bmake/linux-gnu -I/tmp/buildd/petsc-2.3.0/include -I/usr/lib/mpich/include fcopy.F /usr/bin/ar cr /tmp/buildd/petsc-2.3.0/lib/linux-gnu/libpetsc.a fmaxpy.o fmdot.o fnorm.o fmult.o fmultadd.o fsolve.o fsolvebaij.o sgemv.o frelax.o fwaxpy.o faypx.o fcopy.o libfast in: /tmp/buildd/petsc-2.3.0/include libfast in: /tmp/buildd/petsc-2.3.0/include/finclude libfast in: /tmp/buildd/petsc-2.3.0/include/f90impl Completed building libraries ========================================= making shared libraries in /tmp/buildd/petsc-2.3.0/lib/linux-gnu building libpetsc.so building libpetscvec.so building libpetscmat.so building libpetscdm.so building libpetscksp.so building libpetscsnes.so building libpetscts.so make[1]: Leaving directory `/tmp/buildd/petsc-2.3.0' mv lib/linux-gnu lib/fast touch build-arch touch build-indep touch build fakeroot debian/rules binary # Install mpirun.lam and fake petscarch in PETSC_DIR/bin and manpages. # If someone builds with non-standard PETSC_ARCH we want that to be # reflected in the installed script (also removes c-shell dependence). install -d debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/bin cp -p bin/mpirun.lam \ debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/bin/mpirun_lam echo "#!/bin/sh -e" > \ debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/bin/petscarch echo "echo linux-gnu" >> \ debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/bin/petscarch chmod +x debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/bin/petscarch # I know bin is an awkward place to put these, but can't think of a # better one... (doc is a symlink in the -doc package) cp -p debian/petscarch.1 debian/mpirun_lam.1 \ debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/bin gzip --best debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/bin/*.1 # Install bmake files (and makefile?) in PETSC_DIR/bmake; # replace this dir with install dir, and remove top_builddir install -d debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/bmake/linux-gnu cp -a bmake/common* bmake/petscconf \ debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/bmake for bfile in `ls bmake/linux-gnu`; do \ grep -v top_builddir bmake/linux-gnu/$bfile | \ sed "s/`echo /tmp/buildd/petsc-2.3.0 | sed s/\\\\//\\\\\\\\\\\\//g`/\/usr\/lib\/petscdir\/2.3.0/g" > \ debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/bmake/linux-gnu/$bfile ; \ done rm -f debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/bmake/linux-gnu/*.py # Install headers in PETSC_DIR/include install -d debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/include/finclude cp -p include/*.h \ debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/include cp -a include/adic \ debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/include cp -p include/finclude/*.h include/finclude/*.h90 \ debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/include/finclude install -d debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/include/f90impl cp -p include/f90impl/*.h \ debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/include/f90impl cd debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/include && \ ln -s ../bmake/linux-gnu/*.h . # Add m4 files, /usr/share/aclocal symlinks will be made by postinst install -d debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/aclocal cp -p debian/petsc.m4 debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/aclocal cp -p debian/math-blaslapack.m4 debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/aclocal # Install libs in PETSC_DIR, move shared libs to /usr/lib and symlink install -d debian/libpetsc2.3.0/usr/lib install -d debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/lib install -d debian/libpetsc2.3.0-dbg/usr/lib/petscdir/2.3.0/lib cp -a lib/fast debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/lib cp -a lib/debug debian/libpetsc2.3.0-dbg/usr/lib/petscdir/2.3.0/lib for LIB in `cd lib/fast && ls *.so.*` ; \ do \ mv debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/lib/fast/$LIB \ debian/libpetsc2.3.0/usr/lib/$LIB ; \ ln -s ../../../../$LIB \ debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/lib/fast/$LIB ; \ done ln -s fast debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/lib/linux-gnu # Make legacy symlinks including C++ ln -s fast debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/lib/libO ln -s fast debian/libpetsc2.3.0-dev/usr/lib/petscdir/2.3.0/lib/libO_c++ ln -s debug debian/libpetsc2.3.0-dbg/usr/lib/petscdir/2.3.0/lib/libg ln -s debug debian/libpetsc2.3.0-dbg/usr/lib/petscdir/2.3.0/lib/libg_c++ touch install-arch # Install header documentation in -doc/include install -d debian/petsc2.3.0-doc/usr/share/doc/petsc2.3.0-doc/include/finclude cp -p include/*.html \ debian/petsc2.3.0-doc/usr/share/doc/petsc2.3.0-doc/include cp -p include/finclude/*.html \ debian/petsc2.3.0-doc/usr/share/doc/petsc2.3.0-doc/include/finclude install -d debian/petsc2.3.0-doc/usr/share/doc/petsc2.3.0-doc/include/f90impl cp -p include/f90impl/*.html \ debian/petsc2.3.0-doc/usr/share/doc/petsc2.3.0-doc/include/f90impl for HEADERDOC in `cd debian/petsc2.3.0-doc/usr/share/doc/petsc2.3.0-doc/ && find include -name \*.h.html -print | sed s/.h.html/.h/`; \ do \ dh_link -ppetsc2.3.0-doc \ usr/lib/petscdir/2.3.0/$HEADERDOC \ usr/share/doc/petsc2.3.0-doc/$HEADERDOC; \ done dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. dh_link: Compatibility levels before 4 are deprecated. # Install examples documentation in -doc/src directory for TESTDIR in `find src -name tests -print | sed "s/src\///"` \ `find src -name exercises -print | sed "s/src\///"` \ `find src -name tutorials -print | sed "s/src\///"` benchmarks \ snes/examples/tutorials/ex10d snes/examples/tests/umin; \ do \ install -d debian/petsc2.3.0-doc/usr/share/doc/petsc2.3.0-doc/src/$TESTDIR; \ for TESTDOC in `find src/$TESTDIR -name \*.html -print`; do \ cp -a $TESTDOC \ debian/petsc2.3.0-doc/usr/share/doc/petsc2.3.0-doc/src/$TESTDIR; \ done ; \ done find: src/snes/examples/tests/umin: No such file or directory # I don't know of a way to do this "recursively" rmdir `find debian/petsc2.3.0-doc -empty -type d -print` rmdir `find debian/petsc2.3.0-doc -empty -type d -print` rmdir `find debian/petsc2.3.0-doc -empty -type d -print` # Install examples & makefiles into temporary directory debian/extemp for TESTDIR in `find src -name tests -print | sed "s/src\///"` \ `find src -name exercises -print | sed "s/src\///"` \ `find src -name tutorials -print | sed "s/src\///"` benchmarks; \ do \ install -d debian/extemp/src/$TESTDIR; \ cp -a src/$TESTDIR/* debian/extemp/src/$TESTDIR; \ done for MAKEFILE in `find src -name makefile -print | sed "s/src\///"`; \ do \ if [ -d debian/extemp/src/`echo $MAKEFILE | sed "s/makefile//"` ] ;\ then \ cp -p src/$MAKEFILE debian/extemp/src/$MAKEFILE; \ fi; \ done # Clean up documentation from debian/extemp rm -f `find debian/extemp -name \*.html -print` # HACK ALERT! This is a very inelegant way to assemble this makefile! rm -f debian/extemp/src/makefile sed "s/inline//" < src/makefile | grep -v include \ > debian/extemp/src/makefile grep -v \$Id makefile | grep -v DIRS >> debian/extemp/src/makefile # Pack debian/extemp/src into src.tar.gz and install cd debian/extemp && tar czf src.tar.gz src mv debian/extemp/src.tar.gz \ debian/petsc2.3.0-doc/usr/share/doc/petsc2.3.0-doc/src.tar.gz rm -rf debian/extemp # Make links to documentation and examples from PETSC_DIR and docs dh_link -ppetsc2.3.0-doc \ usr/share/doc/petsc2.3.0-doc/docs \ usr/lib/petscdir/2.3.0/docs \ usr/share/doc/petsc2.3.0-doc/index.html \ usr/lib/petscdir/2.3.0/index.html \ usr/share/doc/petsc2.3.0-doc/makefile.html \ usr/lib/petscdir/2.3.0/makefile.html \ usr/share/doc/petsc2.3.0-doc/readme.html \ usr/lib/petscdir/2.3.0/readme.html \ usr/share/doc/petsc2.3.0-doc/src \ usr/lib/petscdir/2.3.0/src dh_link: Compatibility levels before 4 are deprecated. touch install-indep dh_testdir -i dh_testroot -i dh_installdirs -i dh_installdirs: Compatibility levels before 4 are deprecated. dh_installdocs -i dh_installdocs: Compatibility levels before 4 are deprecated. # Clean up and finish rm -f `find debian/petsc2.3.0-doc -name ?akefile -print` rm -f `find debian/petsc2.3.0-doc -name *.cit* -print` rm -f `find debian/petsc2.3.0-doc -empty -print` dh_installchangelogs -i dpkg-parsechangelog: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) debian: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) dh_installchangelogs: Compatibility levels before 4 are deprecated. dh_compress -i -X.xbm dh_compress: Compatibility levels before 4 are deprecated. dh_fixperms -i dh_fixperms: Compatibility levels before 4 are deprecated. dh_installdeb -i dh_installdeb: Compatibility levels before 4 are deprecated. dh_gencontrol -i dh_gencontrol: Compatibility levels before 4 are deprecated. dpkg-gencontrol: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) dpkg-architecture: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) dpkg-parsechangelog: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) debian: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) dpkg-architecture: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) dpkg-gencontrol: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) dpkg-architecture: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) dpkg-parsechangelog: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) debian: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) dpkg-architecture: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) dh_md5sums -i dh_md5sums: Compatibility levels before 4 are deprecated. dh_builddeb -i dh_builddeb: Compatibility levels before 4 are deprecated. dpkg-deb: building package `petsc-dev' in `../petsc-dev_2.3.0-3_all.deb'. dpkg-deb: building package `petsc2.3.0-doc' in `../petsc2.3.0-doc_2.3.0-3_all.deb'. dh_testdir -a dh_testroot -a # Customize control etc. using package names (maybe with -lam or -dec) mv -f debian/control debian/control.in sed "s/2.3.0/2.3.0/" < debian/control.in | \ sed "s/2.3.0-doc/2.3.0-doc/" | \ sed "s/Provides: petsc2.3.0-dev/Provides: petsc2.3.0-dev/" | \ sed "s/Provides: petsc2.3.0-dbg/Provides: petsc2.3.0-dbg/" \ > debian/control if [ "main" = "contrib" ]; then \ sed "s/Section: lib/Section: contrib\/lib/" < debian/control > \ debian/control.contrib ; \ mv -f debian/control.contrib debian/control ; \ fi for ARCHGEN in debian/libpetsc2.3.0-dev.docs debian/libpetsc2.3.0-dev.postinst debian/libpetsc2.3.0-dev.prerm; do \ rm -f $ARCHGEN ; \ sed "s/petsc_arch/linux-gnu/" < \ `echo "$ARCHGEN.in" | sed "s/petsc2.3.0/petsc2.3.0/"` | \ sed "s/petsc_ver/2.3.0/" > $ARCHGEN; \ done # Generate substvars for MPI, linear algebra implementations and dist rm -f debian/*.substvars if [ "mpich" == "mpich" -o "mpich" == "mpich-mpd" -o "mpich" == "mpich-shmem" ]; then \ echo "mpi=mpich-bin (>= 1.2.7)" > debian/libpetsc2.3.0.substvars; \ echo "mpi-dev=libmpich1.0-dev (>= 1.2.7)" > debian/libpetsc2.3.0-dev.substvars; \ elif [ "mpich" == "lam" ]; then \ echo "mpi=lam-runtime" > debian/libpetsc2.3.0.substvars; \ echo "mpi-dev=lam-dev" > debian/libpetsc2.3.0-dev.substvars; \ else \ echo "Unknown MPI implementation, stopping"; \ exit 1; \ fi if [ "linux-gnu" == "linux_alpha_dec" ]; then \ echo "linear-algebra-dev=cxml" >> debian/libpetsc2.3.0-dev.substvars; \ echo "petsc-compilers=ccc, cfal" >> debian/libpetsc2.3.0-dev.substvars; \ else \ echo "linear-algebra-dev=refblas3-dev | libblas-3.so, lapack3-dev | liblapack-3.so" >> debian/libpetsc2.3.0-dev.substvars; \ echo "petsc-compilers=g77" >> debian/libpetsc2.3.0-dev.substvars; \ fi if [ "main" == "main" ]; then \ echo "petsc-extra-dev=" >> debian/libpetsc2.3.0-dev.substvars; \ elif [ "main" == "contrib" ]; then \ echo "petsc-extra-dev=libhypre-dev, libparmetis-dev" >> debian/libpetsc2.3.0-dev.substvars; \ else \ echo "Unknown Debian distribution, stopping"; \ exit 1; \ fi # The rest is pretty much debhelper boilerplate dh_installdirs -a dh_installdirs: Compatibility levels before 4 are deprecated. dh_installdocs -a dh_installdocs: Compatibility levels before 4 are deprecated. dh_installchangelogs -a dpkg-parsechangelog: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) debian: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) dh_installchangelogs: Compatibility levels before 4 are deprecated. dh_strip -a -Xlibg dh_strip: Compatibility levels before 4 are deprecated. dh_makeshlibs -a -m2.3.0 dh_makeshlibs: Compatibility levels before 4 are deprecated. dh_compress -a dh_compress: Compatibility levels before 4 are deprecated. dh_fixperms -a dh_fixperms: Compatibility levels before 4 are deprecated. dh_installdeb -a dh_installdeb: Compatibility levels before 4 are deprecated. dh_shlibdeps -a dh_shlibdeps: Compatibility levels before 4 are deprecated. dpkg-shlibdeps: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) dh_gencontrol -a dh_gencontrol: Compatibility levels before 4 are deprecated. dpkg-gencontrol: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) dpkg-architecture: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) dpkg-parsechangelog: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) debian: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) dpkg-architecture: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) dpkg-gencontrol: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) dpkg-architecture: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) dpkg-parsechangelog: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) debian: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) dpkg-architecture: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) dpkg-gencontrol: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) dpkg-architecture: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) dpkg-parsechangelog: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) debian: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) dpkg-architecture: warning: no utmp entry available and LOGNAME not defined; using uid of process (0) dh_md5sums -a dh_md5sums: Compatibility levels before 4 are deprecated. dh_builddeb -a dh_builddeb: Compatibility levels before 4 are deprecated. dpkg-deb: building package `libpetsc2.3.0-dev' in `../libpetsc2.3.0-dev_2.3.0-3_i386.deb'. dpkg-deb: building package `libpetsc2.3.0' in `../libpetsc2.3.0_2.3.0-3_i386.deb'. dpkg-deb: building package `libpetsc2.3.0-dbg' in `../libpetsc2.3.0-dbg_2.3.0-3_i386.deb'. mv -f debian/control.in debian/control dpkg-genchanges dpkg-genchanges: warning: no utmp entry available and LOGNAME not defined; using uid of process (1234) dpkg-architecture: warning: no utmp entry available and LOGNAME not defined; using uid of process (1234) dpkg-parsechangelog: warning: no utmp entry available and LOGNAME not defined; using uid of process (1234) debian: warning: no utmp entry available and LOGNAME not defined; using uid of process (1234) dpkg-genchanges: not including original source code in upload dpkg-buildpackage: binary and diff upload (original source NOT included) Copying back the cached apt archive contents -> unmounting dev/pts filesystem -> unmounting proc filesystem Current time: Sat Mar 4 10:34:02 CST 2006 pbuilder-time-stamp: 1141490042 -> cleaning the build env -> removing directory /var/cache/pbuilder/build//4030 and its subdirectories