pdb2pqr version 1.7-1 failed to build on armel

Bug #791313 reported by Ricardo Salveti on 2011-06-01
6
This bug affects 1 person
Affects Status Importance Assigned to Milestone
pdb2pqr (Debian)
Fix Released
Unknown
pdb2pqr (Ubuntu)
Undecided
Unassigned

Bug Description

pdb2pqr version 1.7-1 failed to build on armel
Link to failed build: https://launchpad.net/ubuntu/+source/pdb2pqr/1.7-1/+build/2480513

Direct link to the build log: https://launchpad.net/ubuntu/+source/pdb2pqr/1.7-1/+build/2480513/+files/buildlog_ubuntu-oneiric-armel.pdb2pqr_1.7-1_FAILEDTOBUILD.txt.gz

This log snippet might be of interest, since it triggered the matcher 'Purging chroot-autobuild'.
Excerpt 625 lines into the build log:

       CALL RUNPROPKA(NATOM, PDB, 'PROPKATMP3')
                                  1
Warning: Character length of actual argument shorter than of dummy argument 'outname' (10/100) at (1)
gcc -DPACKAGE_NAME=\"PropKa\" -DPACKAGE_TARNAME=\"propka\" -DPACKAGE_VERSION=\"1.0.0\" -DPACKAGE_STRING=\"PropKa\ 1.0.0\" -DPACKAGE_BUGREPORT=\"<email address hidden>\" -DPACKAGE=\"PropKa\" -DVERSION=\"1.0.0\" -I. -I. -I/usr/include/python2.7 -g -O2 -c `test -f 'propkac.c' || echo './'`propkac.c
f95 -o _propkalib.so -shared propkalib.o propka.o propkac.o
/usr/bin/ld: propkalib.o: relocation R_ARM_THM_MOVW_ABS_NC against `a local symbol' can not be used when making a shared object; recompile with -fPIC
propkalib.o: could not read symbols: Bad value
collect2: ld returned 1 exit status
make[2]: *** [_propkalib.so] Error 1
make[2]: Leaving directory `/build/buildd/pdb2pqr-1.7/propka'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/build/buildd/pdb2pqr-1.7'
dh_auto_build: make -j1 returned exit code 2
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
******************************************************************************
Build finished at 20110509-0337
FAILED [dpkg-buildpackage died]
Purging chroot-autobuild/build/buildd/pdb2pqr-1.7

Colin Watson (cjwatson) wrote :

This bug was fixed in the package pdb2pqr - 1.7-2

---------------
pdb2pqr (1.7-2) unstable; urgency=low

  * Pass -fPIC to compiler on all architectures. Closes: 636204. LP: 791313.
  * Bumped Standards-Version to 3.9.2. No changes needed.

 -- Manuel Prinz <email address hidden> Wed, 31 Aug 2011 00:22:15 +0200

Changed in pdb2pqr (Ubuntu):
status: New → Fix Released
Changed in pdb2pqr (Debian):
status: Unknown → Fix Released
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