Ubuntu
pbsuite package

pbsuite 15.8.24+dfsg-2 source package in Ubuntu

Changelog

pbsuite (15.8.24+dfsg-2) unstable; urgency=medium

  * Update pbsuite for compatibility with blasr 5 (Closes: #844034)
  * Bump Standards-Version to 3.9.8
  * Add dependency on intervaltree-bio to restore PBHoney's ComplexResolver
  * debian/rules: don't use buildsystem=pybuild

 -- Afif Elghraoui <email address hidden>  Wed, 28 Dec 2016 22:42:12 -0800

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Bionic release universe misc

Builds

Zesty: [FULLYBUILT] amd64

Downloads

File Size SHA-256 Checksum
pbsuite_15.8.24+dfsg-2.dsc 2.2 KiB c2919d65dcba0a298692ce38d646221748183de0c29ffdfb7b7fc273a9295015
pbsuite_15.8.24+dfsg.orig.tar.xz 1.5 MiB f58813e9e3ed9e3f161de8460ed1e1d86be5a817cbeb0e041cc94cbd3e9e3aab
pbsuite_15.8.24+dfsg-2.debian.tar.xz 10.4 KiB 4d0ec1b7243fed7456d0c3e4abc8fe50b39173b33af45b14fd774dba08905284

Available diffs

No changes file available.

Binary packages built by this source

pbhoney: No summary available for pbhoney in ubuntu cosmic.

No description available for pbhoney in ubuntu cosmic.

pbjelly: genome assembly upgrading tool

 PBJelly is a highly automated pipeline that aligns long sequencing
 reads (such as PacBio RS reads or long 454 reads in fasta format)
 to high-confidence draft assembles. PBJelly fills or reduces as
 many captured gaps as possible to produce upgraded draft genomes.
 .
 PBJelly is part of the PBSuite.

pbsuite: software for Pacific Biosciences sequencing data

 The PBSuite contains two projects created for analysis of
 Pacific Biosciences long-read sequencing data.
  * PBJelly - genome upgrading tool
  * PBHoney - structural variation discovery

python-pbbanana: additional utilities for the pbsuite

 PBBanana contains some assembly and consensus utilities
 for the PBSuite.
  * OLCAssembly - A shortcut to calling pacbio's Allora Assembler
  * Polish - A quick consensus caller
  * PBJNovo - DeNovo Assembler of PacBio only reads
 .
 This package is intended for use internally by the PBSuite

python-pbsuite-utils: software for Pacific Biosciences sequencing data -- Python utilities

 The PBSuite currently contains two projects created and maintained
 by Adam English for analysis of Pacific Biosciences long-read
 sequencing data.
  * PBJelly - genome upgrading tool
  * PBHoney - structural variation discovery
 .
 This package contains Python 2 utilities for the suite.