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pbdagcon package

pbdagcon 0.3+git20180411.c14c422+dfsg-8build2 source package in Ubuntu

Changelog

pbdagcon (0.3+git20180411.c14c422+dfsg-8build2) mantic; urgency=medium

  * Rebuilda gainst latest pbbam

 -- Jeremy Bícha <email address hidden>  Sun, 03 Sep 2023 10:38:21 -0400

Upload details

Uploaded by:
Jeremy Bícha
Uploaded to:
Mantic
Original maintainer:
Ubuntu Developers
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Mantic release universe misc

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File Size SHA-256 Checksum
pbdagcon_0.3+git20180411.c14c422+dfsg.orig.tar.xz 77.9 KiB f554fedfaa673cb22bebb28d941139e72a1a9284039929c92b16d9c58fc1f8b9
pbdagcon_0.3+git20180411.c14c422+dfsg-8build2.debian.tar.xz 56.9 KiB 7df43e4f25cfaa9c96de6f09b867af72b6853d51a37d573559e6c4d2a7a04920
pbdagcon_0.3+git20180411.c14c422+dfsg-8build2.dsc 2.4 KiB 5077b18c2f0c2d6d9ceeefdcbb8bc2d8df3570881d90c3a5930e04eb60b4bb51

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Binary packages built by this source

pbdagcon: sequence consensus using directed acyclic graphs

 pbdagcon is a tool that implements DAGCon (Directed Acyclic Graph Consensus)
 which is a sequence consensus algorithm based on using directed acyclic
 graphs to encode multiple sequence alignment.
 .
 It uses the alignment information from blasr to align sequence reads to a
 "backbone" sequence. Based on the underlying alignment directed acyclic graph
 (DAG), it will be able to use the new information from the reads to find the
 discrepancies between the reads and the "backbone" sequences. A dynamic
 programming process is then applied to the DAG to find the optimum sequence
 of bases as the consensus. The new consensus can be used as a new backbone
 sequence to iteratively improve the consensus quality.
 .
 While the code is developed for processing PacBio(TM) raw sequence data,
 the algorithm can be used for general consensus purpose. Currently, it only
 takes FASTA input. For shorter read sequences, one might need to adjust the
 blasr alignment parameters to get the alignment string properly.
 .
 The code and the underlying graphical data structure have been used for some
 algorithm development prototyping including phasing reads and pre-assembly.

pbdagcon-dbgsym: debug symbols for pbdagcon