https://launchpad.net/ubuntu/+source/pbalign/0.3.2-1/+build/16326344
RUN: /usr/share/launchpad-buildd/slavebin/slave-prep 
Forking launchpad-buildd slave process...
Kernel version: Linux lgw01-amd64-048 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:40:15 UTC 2018 x86_64
Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2.
Syncing the system clock with the buildd NTP service...
27 Jan 23:28:48 ntpdate[1807]: adjust time server 10.211.37.1 offset -0.000010 sec
RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16326344 /home/buildd/filecache-default/020b0022f770b890c357907d03d82568c584d50e
Creating target for build PACKAGEBUILD-16326344
RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16326344
Starting target for build PACKAGEBUILD-16326344
RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16326344 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe'
Overriding sources.list in build-PACKAGEBUILD-16326344
RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16326344
Updating target for build PACKAGEBUILD-16326344
Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB]
Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB]
Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB]
Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB]
Get:5 http://ftpmaster.internal/ubuntu disco/main amd64 Packages [1007 kB]
Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [511 kB]
Get:7 http://ftpmaster.internal/ubuntu disco/universe amd64 Packages [9086 kB]
Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5220 kB]
Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 Packages [70.2 kB]
Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [26.0 kB]
Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 Packages [159 kB]
Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [92.2 kB]
Fetched 16.6 MB in 3s (6243 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following package was automatically installed and is no longer required:
  libreadline7
Use 'sudo apt autoremove' to remove it.
The following NEW packages will be installed:
  libreadline8
The following packages will be upgraded:
  apt bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils
  ca-certificates coreutils cpp-8 dash debconf debianutils dpkg dpkg-dev
  e2fslibs e2fsprogs fdisk findutils g++-8 gcc-8 gcc-8-base gpg gpg-agent
  gpgconf gpgv grep gzip init init-system-helpers libapt-pkg5.0 libargon2-1
  libasan5 libassuan0 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0
  libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libfdisk1 libgcc-8-dev
  libgcc1 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libitm1
  libjson-c3 liblsan0 liblz4-1 libmount1 libmpfr6 libmpx2 libpng16-16
  libquadmath0 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0
  libss2 libstdc++-8-dev libstdc++6 libsystemd0 libtsan0 libubsan1 libudev1
  libuuid1 libzstd1 linux-libc-dev login mount passwd readline-common sed
  systemd systemd-sysv tar tzdata util-linux zlib1g
84 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 56.0 MB of archives.
After this operation, 6170 kB of additional disk space will be used.
Get:1 http://ftpmaster.internal/ubuntu disco/main amd64 debianutils amd64 4.8.6.1 [85.5 kB]
Get:2 http://ftpmaster.internal/ubuntu disco/main amd64 bash amd64 5.0-2ubuntu1 [644 kB]
Get:3 http://ftpmaster.internal/ubuntu disco/main amd64 bsdutils amd64 1:2.33.1-0.1ubuntu1 [63.6 kB]
Get:4 http://ftpmaster.internal/ubuntu disco/main amd64 coreutils amd64 8.30-1ubuntu1 [1243 kB]
Get:5 http://ftpmaster.internal/ubuntu disco/main amd64 tar amd64 1.30+dfsg-4 [242 kB]
Get:6 http://ftpmaster.internal/ubuntu disco/main amd64 dpkg amd64 1.19.2ubuntu2 [1101 kB]
Get:7 http://ftpmaster.internal/ubuntu disco/main amd64 debconf all 1.5.70 [122 kB]
Get:8 http://ftpmaster.internal/ubuntu disco/main amd64 dash amd64 0.5.10.2-4ubuntu1 [85.8 kB]
Get:9 http://ftpmaster.internal/ubuntu disco/main amd64 findutils amd64 4.6.0+git+20190105-2 [329 kB]
Get:10 http://ftpmaster.internal/ubuntu disco/main amd64 grep amd64 3.3-1 [149 kB]
Get:11 http://ftpmaster.internal/ubuntu disco/main amd64 gzip amd64 1.9-3 [93.8 kB]
Get:12 http://ftpmaster.internal/ubuntu disco/main amd64 libsmartcols1 amd64 2.33.1-0.1ubuntu1 [92.2 kB]
Get:13 http://ftpmaster.internal/ubuntu disco/main amd64 libuuid1 amd64 2.33.1-0.1ubuntu1 [20.9 kB]
Get:14 http://ftpmaster.internal/ubuntu disco/main amd64 libblkid1 amd64 2.33.1-0.1ubuntu1 [133 kB]
Get:15 http://ftpmaster.internal/ubuntu disco/main amd64 libfdisk1 amd64 2.33.1-0.1ubuntu1 [173 kB]
Get:16 http://ftpmaster.internal/ubuntu disco/main amd64 libmount1 amd64 2.33.1-0.1ubuntu1 [146 kB]
Get:17 http://ftpmaster.internal/ubuntu disco/main amd64 fdisk amd64 2.33.1-0.1ubuntu1 [118 kB]
Get:18 http://ftpmaster.internal/ubuntu disco/main amd64 login amd64 1:4.5-1.1ubuntu1 [264 kB]
Get:19 http://ftpmaster.internal/ubuntu disco/main amd64 util-linux amd64 2.33.1-0.1ubuntu1 [1002 kB]
Get:20 http://ftpmaster.internal/ubuntu disco/main amd64 sed amd64 4.7-1 [190 kB]
Get:21 http://ftpmaster.internal/ubuntu disco/main amd64 init-system-helpers all 1.56+nmu1 [38.2 kB]
Get:22 http://ftpmaster.internal/ubuntu disco/main amd64 libgnutls30 amd64 3.6.5-2ubuntu1 [759 kB]
Get:23 http://ftpmaster.internal/ubuntu disco/main amd64 libcc1-0 amd64 8.2.0-15ubuntu1 [47.3 kB]
Get:24 http://ftpmaster.internal/ubuntu disco/main amd64 gcc-8-base amd64 8.2.0-15ubuntu1 [18.7 kB]
Get:25 http://ftpmaster.internal/ubuntu disco/main amd64 libgcc1 amd64 1:8.2.0-15ubuntu1 [40.8 kB]
Get:26 http://ftpmaster.internal/ubuntu disco/main amd64 libgomp1 amd64 8.2.0-15ubuntu1 [76.5 kB]
Get:27 http://ftpmaster.internal/ubuntu disco/main amd64 libitm1 amd64 8.2.0-15ubuntu1 [28.1 kB]
Get:28 http://ftpmaster.internal/ubuntu disco/main amd64 libatomic1 amd64 8.2.0-15ubuntu1 [9068 B]
Get:29 http://ftpmaster.internal/ubuntu disco/main amd64 libasan5 amd64 8.2.0-15ubuntu1 [364 kB]
Get:30 http://ftpmaster.internal/ubuntu disco/main amd64 liblsan0 amd64 8.2.0-15ubuntu1 [132 kB]
Get:31 http://ftpmaster.internal/ubuntu disco/main amd64 libtsan0 amd64 8.2.0-15ubuntu1 [288 kB]
Get:32 http://ftpmaster.internal/ubuntu disco/main amd64 libubsan1 amd64 8.2.0-15ubuntu1 [121 kB]
Get:33 http://ftpmaster.internal/ubuntu disco/main amd64 libmpx2 amd64 8.2.0-15ubuntu1 [11.7 kB]
Get:34 http://ftpmaster.internal/ubuntu disco/main amd64 libquadmath0 amd64 8.2.0-15ubuntu1 [134 kB]
Get:35 http://ftpmaster.internal/ubuntu disco/main amd64 g++-8 amd64 8.2.0-15ubuntu1 [10.0 MB]
Get:36 http://ftpmaster.internal/ubuntu disco/main amd64 libstdc++-8-dev amd64 8.2.0-15ubuntu1 [1540 kB]
Get:37 http://ftpmaster.internal/ubuntu disco/main amd64 libgcc-8-dev amd64 8.2.0-15ubuntu1 [2306 kB]
Get:38 http://ftpmaster.internal/ubuntu disco/main amd64 gcc-8 amd64 8.2.0-15ubuntu1 [9734 kB]
Get:39 http://ftpmaster.internal/ubuntu disco/main amd64 cpp-8 amd64 8.2.0-15ubuntu1 [8879 kB]
Get:40 http://ftpmaster.internal/ubuntu disco/main amd64 libstdc++6 amd64 8.2.0-15ubuntu1 [398 kB]
Get:41 http://ftpmaster.internal/ubuntu disco/main amd64 libmpfr6 amd64 4.0.2~rc1-1 [240 kB]
Get:42 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 zlib1g amd64 1:1.2.11.dfsg-1ubuntu2 [54.0 kB]
Get:43 http://ftpmaster.internal/ubuntu disco/main amd64 libbinutils amd64 2.31.1-11ubuntu1 [484 kB]
Get:44 http://ftpmaster.internal/ubuntu disco/main amd64 binutils-common amd64 2.31.1-11ubuntu1 [194 kB]
Get:45 http://ftpmaster.internal/ubuntu disco/main amd64 binutils amd64 2.31.1-11ubuntu1 [3396 B]
Get:46 http://ftpmaster.internal/ubuntu disco/main amd64 binutils-x86-64-linux-gnu amd64 2.31.1-11ubuntu1 [1829 kB]
Get:47 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 liblz4-1 amd64 1.8.3-1ubuntu1 [71.7 kB]
Get:48 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libudev1 amd64 240-4ubuntu2 [70.5 kB]
Get:49 http://ftpmaster.internal/ubuntu disco/main amd64 libzstd1 amd64 1.3.8+dfsg-3 [226 kB]
Get:50 http://ftpmaster.internal/ubuntu disco/main amd64 libapt-pkg5.0 amd64 1.8.0~beta1 [817 kB]
Get:51 http://ftpmaster.internal/ubuntu disco/main amd64 libgpg-error0 amd64 1.33-3 [57.4 kB]
Get:52 http://ftpmaster.internal/ubuntu disco/main amd64 gpgv amd64 2.2.12-1ubuntu2 [198 kB]
Get:53 http://ftpmaster.internal/ubuntu disco/main amd64 apt amd64 1.8.0~beta1 [1170 kB]
Get:54 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 systemd-sysv amd64 240-4ubuntu2 [9384 B]
Get:55 http://ftpmaster.internal/ubuntu disco/main amd64 mount amd64 2.33.1-0.1ubuntu1 [113 kB]
Get:56 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 systemd amd64 240-4ubuntu2 [3328 kB]
Get:57 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libsystemd0 amd64 240-4ubuntu2 [249 kB]
Get:58 http://ftpmaster.internal/ubuntu disco/main amd64 libext2fs2 amd64 1.44.5-1 [159 kB]
Get:59 http://ftpmaster.internal/ubuntu disco/main amd64 e2fsprogs amd64 1.44.5-1 [514 kB]
Get:60 http://ftpmaster.internal/ubuntu disco/main amd64 init amd64 1.56+nmu1 [6080 B]
Get:61 http://ftpmaster.internal/ubuntu disco/main amd64 libcap-ng0 amd64 0.7.9-2 [11.0 kB]
Get:62 http://ftpmaster.internal/ubuntu disco/main amd64 libsemanage-common all 2.8-2 [7016 B]
Get:63 http://ftpmaster.internal/ubuntu disco/main amd64 libsemanage1 amd64 2.8-2 [85.2 kB]
Get:64 http://ftpmaster.internal/ubuntu disco/main amd64 passwd amd64 1:4.5-1.1ubuntu1 [816 kB]
Get:65 http://ftpmaster.internal/ubuntu disco/main amd64 libcom-err2 amd64 1.44.5-1 [9372 B]
Get:66 http://ftpmaster.internal/ubuntu disco/main amd64 libss2 amd64 1.44.5-1 [11.1 kB]
Get:67 http://ftpmaster.internal/ubuntu disco/main amd64 ca-certificates all 20190110 [146 kB]
Get:68 http://ftpmaster.internal/ubuntu disco/main amd64 libargon2-1 amd64 0~20171227-0.2 [19.2 kB]
Get:69 http://ftpmaster.internal/ubuntu disco/main amd64 libjson-c3 amd64 0.12.1+ds-2 [22.2 kB]
Get:70 http://ftpmaster.internal/ubuntu disco/main amd64 readline-common all 8.0-1 [53.4 kB]
Get:71 http://ftpmaster.internal/ubuntu disco/main amd64 libreadline8 amd64 8.0-1 [130 kB]
Get:72 http://ftpmaster.internal/ubuntu disco/main amd64 libsqlite3-0 amd64 3.26.0+fossilbc891ac6b-1build1 [530 kB]
Get:73 http://ftpmaster.internal/ubuntu disco/main amd64 tzdata all 2018i-1 [189 kB]
Get:74 http://ftpmaster.internal/ubuntu disco/main amd64 libgdbm6 amd64 1.18.1-2build1 [27.6 kB]
Get:75 http://ftpmaster.internal/ubuntu disco/main amd64 libpng16-16 amd64 1.6.36-3 [179 kB]
Get:76 http://ftpmaster.internal/ubuntu disco/main amd64 dpkg-dev all 1.19.2ubuntu2 [549 kB]
Get:77 http://ftpmaster.internal/ubuntu disco/main amd64 libdpkg-perl all 1.19.2ubuntu2 [227 kB]
Get:78 http://ftpmaster.internal/ubuntu disco/main amd64 e2fslibs amd64 1.44.5-1 [2704 B]
Get:79 http://ftpmaster.internal/ubuntu disco/main amd64 libassuan0 amd64 2.5.2-1 [35.1 kB]
Get:80 http://ftpmaster.internal/ubuntu disco/main amd64 gpg amd64 2.2.12-1ubuntu2 [475 kB]
Get:81 http://ftpmaster.internal/ubuntu disco/main amd64 gpgconf amd64 2.2.12-1ubuntu2 [123 kB]
Get:82 http://ftpmaster.internal/ubuntu disco/main amd64 gpg-agent amd64 2.2.12-1ubuntu2 [230 kB]
Get:83 http://ftpmaster.internal/ubuntu disco/main amd64 libcomerr2 amd64 1.44.5-1 [2700 B]
Get:84 http://ftpmaster.internal/ubuntu disco/main amd64 libgdbm-compat4 amd64 1.18.1-2build1 [6168 B]
Get:85 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 linux-libc-dev amd64 4.19.0-11.12 [1065 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up debianutils (4.8.6.1) ...
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Preparing to unpack .../bash_5.0-2ubuntu1_amd64.deb ...
Unpacking bash (5.0-2ubuntu1) over (4.4.18-2ubuntu3) ...
Setting up bash (5.0-2ubuntu1) ...
update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode
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Preparing to unpack .../bsdutils_1%3a2.33.1-0.1ubuntu1_amd64.deb ...
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Setting up bsdutils (1:2.33.1-0.1ubuntu1) ...
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Preparing to unpack .../coreutils_8.30-1ubuntu1_amd64.deb ...
Unpacking coreutils (8.30-1ubuntu1) over (8.28-1ubuntu2) ...
Setting up coreutils (8.30-1ubuntu1) ...
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Unpacking tar (1.30+dfsg-4) over (1.30+dfsg-3) ...
Setting up tar (1.30+dfsg-4) ...
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Preparing to unpack .../dpkg_1.19.2ubuntu2_amd64.deb ...
Unpacking dpkg (1.19.2ubuntu2) over (1.19.2ubuntu1) ...
Setting up dpkg (1.19.2ubuntu2) ...
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Preparing to unpack .../debconf_1.5.70_all.deb ...
Unpacking debconf (1.5.70) over (1.5.69) ...
Setting up debconf (1.5.70) ...
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Preparing to unpack .../dash_0.5.10.2-4ubuntu1_amd64.deb ...
Unpacking dash (0.5.10.2-4ubuntu1) over (0.5.10.2-2) ...
Setting up dash (0.5.10.2-4ubuntu1) ...
(Reading database ... 12665 files and directories currently installed.)
Preparing to unpack .../findutils_4.6.0+git+20190105-2_amd64.deb ...
Unpacking findutils (4.6.0+git+20190105-2) over (4.6.0+git+20181018-1) ...
Setting up findutils (4.6.0+git+20190105-2) ...
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Preparing to unpack .../archives/grep_3.3-1_amd64.deb ...
Unpacking grep (3.3-1) over (3.1-3) ...
Setting up grep (3.3-1) ...
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Preparing to unpack .../archives/gzip_1.9-3_amd64.deb ...
Unpacking gzip (1.9-3) over (1.6-5ubuntu2) ...
Setting up gzip (1.9-3) ...
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Unpacking libsmartcols1:amd64 (2.33.1-0.1ubuntu1) over (2.32-0.1ubuntu2) ...
Setting up libsmartcols1:amd64 (2.33.1-0.1ubuntu1) ...
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Preparing to unpack .../libuuid1_2.33.1-0.1ubuntu1_amd64.deb ...
Unpacking libuuid1:amd64 (2.33.1-0.1ubuntu1) over (2.32-0.1ubuntu2) ...
Setting up libuuid1:amd64 (2.33.1-0.1ubuntu1) ...
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Preparing to unpack .../libblkid1_2.33.1-0.1ubuntu1_amd64.deb ...
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Setting up libblkid1:amd64 (2.33.1-0.1ubuntu1) ...
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Preparing to unpack .../libfdisk1_2.33.1-0.1ubuntu1_amd64.deb ...
Unpacking libfdisk1:amd64 (2.33.1-0.1ubuntu1) over (2.32-0.1ubuntu2) ...
Setting up libfdisk1:amd64 (2.33.1-0.1ubuntu1) ...
(Reading database ... 12665 files and directories currently installed.)
Preparing to unpack .../libmount1_2.33.1-0.1ubuntu1_amd64.deb ...
Unpacking libmount1:amd64 (2.33.1-0.1ubuntu1) over (2.32-0.1ubuntu2) ...
Setting up libmount1:amd64 (2.33.1-0.1ubuntu1) ...
(Reading database ... 12665 files and directories currently installed.)
Preparing to unpack .../fdisk_2.33.1-0.1ubuntu1_amd64.deb ...
Unpacking fdisk (2.33.1-0.1ubuntu1) over (2.32-0.1ubuntu2) ...
Setting up fdisk (2.33.1-0.1ubuntu1) ...
(Reading database ... 12668 files and directories currently installed.)
Preparing to unpack .../util-linux_2.33.1-0.1ubuntu1_amd64.deb ...
Unpacking util-linux (2.33.1-0.1ubuntu1) over (2.32-0.1ubuntu2) ...
Replacing files in old package login (1:4.5-1ubuntu1) ...
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Setting up init-system-helpers (1.56+nmu1) ...
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Unpacking libgnutls30:amd64 (3.6.5-2ubuntu1) over (3.6.4-2ubuntu2) ...
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Unpacking gcc-8-base:amd64 (8.2.0-15ubuntu1) over (8.2.0-12ubuntu1) ...
Setting up gcc-8-base:amd64 (8.2.0-15ubuntu1) ...
(Reading database ... 12672 files and directories currently installed.)
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Unpacking libgcc1:amd64 (1:8.2.0-15ubuntu1) over (1:8.2.0-12ubuntu1) ...
Setting up libgcc1:amd64 (1:8.2.0-15ubuntu1) ...
(Reading database ... 12672 files and directories currently installed.)
Preparing to unpack .../00-libgomp1_8.2.0-15ubuntu1_amd64.deb ...
Unpacking libgomp1:amd64 (8.2.0-15ubuntu1) over (8.2.0-12ubuntu1) ...
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Unpacking liblsan0:amd64 (8.2.0-15ubuntu1) over (8.2.0-12ubuntu1) ...
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Unpacking libtsan0:amd64 (8.2.0-15ubuntu1) over (8.2.0-12ubuntu1) ...
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Unpacking libubsan1:amd64 (8.2.0-15ubuntu1) over (8.2.0-12ubuntu1) ...
Preparing to unpack .../07-libmpx2_8.2.0-15ubuntu1_amd64.deb ...
Unpacking libmpx2:amd64 (8.2.0-15ubuntu1) over (8.2.0-12ubuntu1) ...
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Current default time zone: 'Etc/UTC'
Local time is now:      Sun Jan 27 23:29:11 UTC 2019.
Universal Time is now:  Sun Jan 27 23:29:11 UTC 2019.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

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Updating certificates in /etc/ssl/certs...
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Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-16326344 amd64 disco-proposed -c chroot:build-PACKAGEBUILD-16326344 --arch=amd64 --dist=disco-proposed --nolog -A pbalign_0.3.2-1.dsc
Initiating build PACKAGEBUILD-16326344 with 4 jobs across 4 processor cores.
Kernel reported to sbuild: 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:40:15 UTC 2018 x86_64
sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-048.buildd

+==============================================================================+
| pbalign 0.3.2-1 (amd64)                                    27 Jan 2019 23:29 |
+==============================================================================+

Package: pbalign
Version: 0.3.2-1
Source Version: 0.3.2-1
Distribution: disco-proposed
Machine Architecture: amd64
Host Architecture: amd64
Build Architecture: amd64

I: NOTICE: Log filtering will replace 'build/pbalign-HI3iun/pbalign-0.3.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pbalign-HI3iun' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-16326344/chroot-autobuild' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Local sources
-------------

pbalign_0.3.2-1.dsc exists in .; copying to chroot

Check architectures
-------------------


Check dependencies
------------------

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+------------------------------------------------------------------------------+
| Install core build dependencies (apt-based resolver)                         |
+------------------------------------------------------------------------------+

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
  libreadline7
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
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Filtered Build-Depends: debhelper (>= 11~), dh-python, python-all, python-setuptools, python-pbcore, python-pbcommand, python3-sphinx, python-nose
dpkg-deb: building package 'sbuild-build-depends-pbalign-dummy' in '/<<BUILDDIR>>/resolver-onzEAz/apt_archive/sbuild-build-depends-pbalign-dummy.deb'.
Ign:1 copy:/<<BUILDDIR>>/resolver-onzEAz/apt_archive ./ InRelease
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Reading package lists...
Reading package lists...

+------------------------------------------------------------------------------+
| Install pbalign build dependencies (apt-based resolver)                      |
+------------------------------------------------------------------------------+

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
  libreadline7
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file
  gettext gettext-base groff-base intltool-debian libarchive-zip-perl
  libasn1-8-heimdal libblas3 libbsd0 libcroco3 libcurl3-gnutls libdeflate0
  libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0
  libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal
  libheimntlm0-heimdal libhts2 libhx509-5-heimdal libicu63 libjs-jquery
  libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1
  libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2
  libldap-common libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpipeline1
  libpsl5 libpython-stdlib libpython2-stdlib libpython2.7-minimal
  libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal
  libpython3.7-stdlib libroken18-heimdal librtmp1 libsasl2-2
  libsasl2-modules-db libsigsegv2 libtool libuchardet0 libwind0-heimdal
  libxml2 m4 man-db mime-support po-debconf python python-all python-avro
  python-babel-localedata python-certifi python-chardet python-idna
  python-iso8601 python-minimal python-nose python-numpy python-pbcommand
  python-pbcore python-pkg-resources python-pysam python-requests
  python-setuptools python-six python-tz python-urllib3 python2
  python2-minimal python2.7 python2.7-minimal python3 python3-alabaster
  python3-babel python3-certifi python3-chardet python3-distutils
  python3-docutils python3-idna python3-imagesize python3-jinja2
  python3-lib2to3 python3-markupsafe python3-minimal python3-packaging
  python3-pkg-resources python3-pygments python3-pyparsing python3-requests
  python3-roman python3-six python3-sphinx python3-tz python3-urllib3
  python3.7 python3.7-minimal sgml-base sphinx-common xml-core
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff krb5-doc
  krb5-user libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor
  less www-browser libmail-box-perl python-doc python-tk python-coverage
  python-nose-doc gfortran python-dev python-pytest python-numpy-dbg
  python-numpy-doc python-pbcore-doc python-cryptography python-openssl
  python-socks python-setuptools-doc python-ntlm python2-doc python2.7-doc
  binfmt-support python3-doc python3-tk python3-venv docutils-doc
  fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french
  texlive-latex-base texlive-latex-recommended python-jinja2-doc
  python3-setuptools python-pygments-doc ttf-bitstream-vera
  python-pyparsing-doc python3-cryptography python3-openssl python3-socks
  dvipng imagemagick-6.q16 latexmk libjs-mathjax python3-sphinx-rtd-theme
  python3-stemmer sphinx-doc texlive-fonts-recommended texlive-generic-extra
  texlive-latex-extra python3.7-venv python3.7-doc sgml-base-doc
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs javascript-common krb5-locales publicsuffix libsasl2-modules
  libltdl-dev libmail-sendmail-perl python-h5py python-cryptography
  python-ipaddress python-openssl libpaper-utils python3-pil
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file
  gettext gettext-base groff-base intltool-debian libarchive-zip-perl
  libasn1-8-heimdal libblas3 libbsd0 libcroco3 libcurl3-gnutls libdeflate0
  libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0
  libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal
  libheimntlm0-heimdal libhts2 libhx509-5-heimdal libicu63 libjs-jquery
  libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1
  libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2
  libldap-common libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpipeline1
  libpsl5 libpython-stdlib libpython2-stdlib libpython2.7-minimal
  libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal
  libpython3.7-stdlib libroken18-heimdal librtmp1 libsasl2-2
  libsasl2-modules-db libsigsegv2 libtool libuchardet0 libwind0-heimdal
  libxml2 m4 man-db mime-support po-debconf python python-all python-avro
  python-babel-localedata python-certifi python-chardet python-idna
  python-iso8601 python-minimal python-nose python-numpy python-pbcommand
  python-pbcore python-pkg-resources python-pysam python-requests
  python-setuptools python-six python-tz python-urllib3 python2
  python2-minimal python2.7 python2.7-minimal python3 python3-alabaster
  python3-babel python3-certifi python3-chardet python3-distutils
  python3-docutils python3-idna python3-imagesize python3-jinja2
  python3-lib2to3 python3-markupsafe python3-minimal python3-packaging
  python3-pkg-resources python3-pygments python3-pyparsing python3-requests
  python3-roman python3-six python3-sphinx python3-tz python3-urllib3
  python3.7 python3.7-minimal sbuild-build-depends-pbalign-dummy sgml-base
  sphinx-common xml-core
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Setting up libgssapi3-heimdal:amd64 (7.5.0+dfsg-2.1) ...
Setting up python3-lib2to3 (3.7.2-3) ...
Setting up python3-tz (2018.9-1) ...
Setting up python3-distutils (3.7.2-3) ...
Setting up python (2.7.15-4) ...
Setting up python3-pygments (2.3.1+dfsg-1) ...
Setting up python-idna (2.6-1) ...
Setting up python3-roman (2.0.0-3) ...
Setting up python3-imagesize (1.0.0-1) ...
Setting up python-certifi (2018.8.24-1) ...
Setting up python-tz (2018.9-1) ...
Setting up python-avro (1.8.2+dfsg-2) ...
Setting up python-pkg-resources (40.6.3-1) ...
Setting up python-numpy (1:1.16.0-1ubuntu1) ...
Setting up python3-babel (2.6.0+dfsg.1-1) ...
update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode
Setting up python-six (1.12.0-1) ...
Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-2ubuntu1) ...
Setting up python3-requests (2.20.0-2) ...
Setting up python-iso8601 (0.1.11-1) ...
Setting up dh-python (3.20180927ubuntu2) ...
Setting up python-nose (1.3.7-4) ...
Setting up python-all (2.7.15-4) ...
Setting up python-setuptools (40.6.3-1) ...
Setting up python-urllib3 (1.24-1) ...
Setting up python-chardet (3.0.4-3) ...
Setting up libcurl3-gnutls:amd64 (7.63.0-1) ...
Setting up python-requests (2.20.0-2) ...
Setting up python-pbcommand (1.1.1-1) ...
Setting up libhts2:amd64 (1.9-10) ...
Setting up python-pysam (0.15.1+ds-1) ...
Setting up python-pbcore (1.6.5+dfsg-1) ...
Processing triggers for sgml-base (1.29) ...
Setting up docutils-common (0.14+dfsg-3) ...
Processing triggers for sgml-base (1.29) ...
Setting up python3-docutils (0.14+dfsg-3) ...
update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up python3-sphinx (1.8.3-2) ...
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode
Setting up dh-autoreconf (19) ...
Setting up debhelper (12ubuntu1) ...
Setting up sbuild-build-depends-pbalign-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (1.1.0-1) ...
Processing triggers for libc-bin (2.28-0ubuntu1) ...

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.4.0-141-generic amd64 (x86_64)
Toolchain package versions: binutils_2.31.1-11ubuntu1 dpkg-dev_1.19.2ubuntu2 g++-8_8.2.0-15ubuntu1 gcc-8_8.2.0-15ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-15ubuntu1 libstdc++6_8.2.0-15ubuntu1 linux-libc-dev_4.19.0-11.12
Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.8.0~beta1 autoconf_2.69-11 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_5.0-2ubuntu1 binutils_2.31.1-11ubuntu1 binutils-common_2.31.1-11ubuntu1 binutils-x86-64-linux-gnu_2.31.1-11ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.33.1-0.1ubuntu1 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20190110 coreutils_8.30-1ubuntu1 cpp_4:8.2.0-2ubuntu2 cpp-8_8.2.0-15ubuntu1 dash_0.5.10.2-4ubuntu1 debconf_1.5.70 debhelper_12ubuntu1 debianutils_4.8.6.1 dh-autoreconf_19 dh-python_3.20180927ubuntu2 dh-strip-nondeterminism_1.1.0-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu4 docutils-common_0.14+dfsg-3 dpkg_1.19.2ubuntu2 dpkg-dev_1.19.2ubuntu2 dwz_0.12-3 e2fslibs_1.44.5-1 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.33.1-0.1ubuntu1 file_1:5.35-2 findutils_4.6.0+git+20190105-2 g++_4:8.2.0-2ubuntu2 g++-8_8.2.0-15ubuntu1 gcc_4:8.2.0-2ubuntu2 gcc-8_8.2.0-15ubuntu1 gcc-8-base_8.2.0-15ubuntu1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpg_2.2.12-1ubuntu2 gpg-agent_2.2.12-1ubuntu2 gpgconf_2.2.12-1ubuntu2 gpgv_2.2.12-1ubuntu2 grep_3.3-1 groff-base_1.22.4-2 gzip_1.9-3 hostname_3.21 init_1.56+nmu1 init-system-helpers_1.56+nmu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.5 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu10 libapt-pkg5.0_1.8.0~beta1 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.2 libasan5_8.2.0-15ubuntu1 libasn1-8-heimdal_7.5.0+dfsg-2.1 libassuan0_2.5.2-1 libatomic1_8.2.0-15ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu3 libaudit1_1:2.8.3-1ubuntu3 libbinutils_2.31.1-11ubuntu1 libblas3_3.8.0-2 libblkid1_2.33.1-0.1ubuntu1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-0ubuntu1 libc-dev-bin_2.28-0ubuntu1 libc6_2.28-0ubuntu1 libc6-dev_2.28-0ubuntu1 libcap-ng0_0.7.9-2 libcap2_1:2.25-1.2 libcc1-0_8.2.0-15ubuntu1 libcom-err2_1.44.5-1 libcomerr2_1.44.5-1 libcroco3_0.6.12-3 libcryptsetup12_2:2.0.4-2ubuntu2 libcurl3-gnutls_7.63.0-1 libdb5.3_5.3.28+dfsg1-0.2 libdebconfclient0_0.244ubuntu1 libdeflate0_1.2-1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu4 libdpkg-perl_1.19.2ubuntu2 libelf1_0.175-2 libexpat1_2.2.6-1 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1ubuntu1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.1.0-1 libgcc-8-dev_8.2.0-15ubuntu1 libgcc1_1:8.2.0-15ubuntu1 libgcrypt20_1.8.4-3ubuntu1 libgdbm-compat4_1.18.1-2build1 libgdbm6_1.18.1-2build1 libgfortran5_8.2.0-15ubuntu1 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.5-2ubuntu1 libgomp1_8.2.0-15ubuntu1 libgpg-error0_1.33-3 libgssapi-krb5-2_1.17-1 libgssapi3-heimdal_7.5.0+dfsg-2.1 libhcrypto4-heimdal_7.5.0+dfsg-2.1 libheimbase1-heimdal_7.5.0+dfsg-2.1 libheimntlm0-heimdal_7.5.0+dfsg-2.1 libhogweed4_3.4.1~rc1-1 libhts2_1.9-10 libhx509-5-heimdal_7.5.0+dfsg-2.1 libicu63_63.1-6 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.5-1 libip4tc0_1.6.1-2ubuntu3 libisl19_0.20-2 libitm1_8.2.0-15ubuntu1 libjs-jquery_3.2.1-1 libjs-sphinxdoc_1.8.3-2 libjs-underscore_1.8.3~dfsg-2 libjson-c3_0.12.1+ds-2 libk5crypto3_1.17-1 libkeyutils1_1.5.9-9.3 libkmod2_25-1ubuntu2 libkrb5-26-heimdal_7.5.0+dfsg-2.1 libkrb5-3_1.17-1 libkrb5support0_1.17-1 liblapack3_3.8.0-2 libldap-2.4-2_2.4.47+dfsg-2ubuntu1 libldap-common_2.4.47+dfsg-2ubuntu1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.2.0-15ubuntu1 liblz4-1_1.8.3-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.35-2 libmagic1_1:5.35-2 libmount1_2.33.1-0.1ubuntu1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2~rc1-1 libmpx2_8.2.0-15ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4.1~rc1-1 libnghttp2-14_1.36.0-1 libnpth0_1.6-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-11 libperl5.28_5.28.1-3 libpipeline1_1.5.0-2 libpng16-16_1.6.36-3 libprocps7_2:3.3.15-2ubuntu1 libpsl5_0.20.2-2 libpython-stdlib_2.7.15-4 libpython2-stdlib_2.7.15-4 libpython2.7-minimal_2.7.15-5build1 libpython2.7-stdlib_2.7.15-5build1 libpython3-stdlib_3.7.2-1 libpython3.7-minimal_3.7.2-1build1 libpython3.7-stdlib_3.7.2-1build1 libquadmath0_8.2.0-15ubuntu1 libreadline7_7.0-5 libreadline8_8.0-1 libroken18-heimdal_7.5.0+dfsg-2.1 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.3.3-3ubuntu2 libselinux1_2.8-1build2 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.33.1-0.1ubuntu1 libsqlite3-0_3.26.0+fossilbc891ac6b-1build1 libss2_1.44.5-1 libssl1.1_1.1.1a-1ubuntu2 libstdc++-8-dev_8.2.0-15ubuntu1 libstdc++6_8.2.0-15ubuntu1 libsystemd0_240-4ubuntu2 libtasn1-6_4.13-3 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-8 libtsan0_8.2.0-15ubuntu1 libubsan1_8.2.0-15ubuntu1 libuchardet0_0.0.6-3 libudev1_240-4ubuntu2 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.33.1-0.1ubuntu1 libwind0-heimdal_7.5.0+dfsg-2.1 libxml2_2.9.4+dfsg1-7ubuntu3 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.0-11.12 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-1 mawk_1.3.3-17ubuntu3 mime-support_3.60ubuntu1 mount_2.33.1-0.1ubuntu1 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.1a-1ubuntu2 optipng_0.7.6-1.1 passwd_1:4.5-1.1ubuntu1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.28_5.28.1-3 pinentry-curses_1.1.0-1build2 pkgbinarymangler_143 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 python_2.7.15-4 python-all_2.7.15-4 python-avro_1.8.2+dfsg-2 python-babel-localedata_2.6.0+dfsg.1-1 python-certifi_2018.8.24-1 python-chardet_3.0.4-3 python-idna_2.6-1 python-iso8601_0.1.11-1 python-minimal_2.7.15-4 python-nose_1.3.7-4 python-numpy_1:1.16.0-1ubuntu1 python-pbcommand_1.1.1-1 python-pbcore_1.6.5+dfsg-1 python-pkg-resources_40.6.3-1 python-pysam_0.15.1+ds-1 python-requests_2.20.0-2 python-setuptools_40.6.3-1 python-six_1.12.0-1 python-tz_2018.9-1 python-urllib3_1.24-1 python2_2.7.15-4 python2-minimal_2.7.15-4 python2.7_2.7.15-5build1 python2.7-minimal_2.7.15-5build1 python3_3.7.2-1 python3-alabaster_0.7.8-1 python3-babel_2.6.0+dfsg.1-1 python3-certifi_2018.8.24-1 python3-chardet_3.0.4-3 python3-distutils_3.7.2-3 python3-docutils_0.14+dfsg-3 python3-idna_2.6-1 python3-imagesize_1.0.0-1 python3-jinja2_2.10-1 python3-lib2to3_3.7.2-3 python3-markupsafe_1.1.0-1 python3-minimal_3.7.2-1 python3-packaging_19.0-1 python3-pkg-resources_40.6.3-1 python3-pygments_2.3.1+dfsg-1 python3-pyparsing_2.2.0+dfsg1-2 python3-requests_2.20.0-2 python3-roman_2.0.0-3 python3-six_1.12.0-1 python3-sphinx_1.8.3-2 python3-tz_2018.9-1 python3-urllib3_1.24-1 python3.7_3.7.2-1build1 python3.7-minimal_3.7.2-1build1 readline-common_8.0-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pbalign-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sgml-base_1.29 sphinx-common_1.8.3-2 systemd_240-4ubuntu2 systemd-sysv_240-4ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-4 tzdata_2018i-1 ubuntu-keyring_2018.09.18.1 util-linux_2.33.1-0.1ubuntu1 xml-core_0.18 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1ubuntu2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: Signature made Sat Jan 26 12:33:23 2019 UTC
gpgv:                using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1
gpgv:                issuer "moeller@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./pbalign_0.3.2-1.dsc
dpkg-source: info: extracting pbalign in pbalign-0.3.2
dpkg-source: info: unpacking pbalign_0.3.2.orig.tar.gz
dpkg-source: info: unpacking pbalign_0.3.2-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying find_definitions_from_pbcore.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=C.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-16326344
SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-16326344
SCHROOT_COMMAND=env
SCHROOT_GID=2501
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=build-PACKAGEBUILD-16326344
SCHROOT_UID=2001
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=unknown
USER=buildd
V=1

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package pbalign
dpkg-buildpackage: info: source version 0.3.2-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 fakeroot debian/rules clean
dh clean --with=python2 --buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:217: python2.7 setup.py clean 
/usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'test_requires'
  warnings.warn(msg)
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build' (and everything under it)
'build/bdist.linux-amd64' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
rm -rf doc/_build/
rm -f doc/pbalign.alignservice.rst doc/pbalign.rst doc/pbalign.tasks.rst doc/pbalign.tools.rst doc/pbalign.utils.rst
rm -rf pbalign.egg-info
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules build
dh build --with=python2 --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:217: python2.7 setup.py config 
/usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'test_requires'
  warnings.warn(msg)
running config
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
I: pybuild base:217: /usr/bin/python setup.py build 
/usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'test_requires'
  warnings.warn(msg)
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign
copying pbalign/bampostservice.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign
copying pbalign/service.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign
copying pbalign/ccs.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign
copying pbalign/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign
copying pbalign/filterservice.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign
copying pbalign/options.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign
copying pbalign/pbalignrunner.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign
copying pbalign/pbalignfiles.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign
creating /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/tools
copying pbalign/tools/loadChemistry.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/tools
copying pbalign/tools/extractUnmappedSubreads.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/tools
copying pbalign/tools/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/tools
copying pbalign/tools/createChemistryHeader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/tools
copying pbalign/tools/mask_aligned_reads.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/tools
creating /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/alignservice
copying pbalign/alignservice/gmap.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/alignservice
copying pbalign/alignservice/align.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/alignservice
copying pbalign/alignservice/blasr.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/alignservice
copying pbalign/alignservice/fastabasedalign.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/alignservice
copying pbalign/alignservice/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/alignservice
copying pbalign/alignservice/bowtie.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/alignservice
creating /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/utils
copying pbalign/utils/RgnH5IO.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/utils
copying pbalign/utils/fileutil.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/utils
copying pbalign/utils/tempfileutil.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/utils
copying pbalign/utils/progutil.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/utils
copying pbalign/utils/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/utils
creating /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/tasks
copying pbalign/tasks/align_minorvariants.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/tasks
copying pbalign/tasks/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/tasks
/usr/bin/make doc
make[2]: Entering directory '/<<PKGBUILDDIR>>'
sphinx-apidoc -T -f -o doc pbalign/ && cd doc && make html
Creating file doc/pbalign.rst.
Creating file doc/pbalign.alignservice.rst.
Creating file doc/pbalign.tasks.rst.
Creating file doc/pbalign.tools.rst.
Creating file doc/pbalign.utils.rst.
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc'
sphinx-build -b html -d _build/doctrees   . _build/html
Running Sphinx v1.8.3
making output directory...
loading intersphinx inventory from http://docs.python.org/objects.inv...
WARNING: failed to reach any of the inventories with the following issues:
WARNING: intersphinx inventory 'http://docs.python.org/objects.inv' not fetchable due to <class 'requests.exceptions.ConnectionError'>: ('intersphinx inventory %r not fetchable due to %s: %s', 'http://docs.python.org/objects.inv', <class 'requests.exceptions.ConnectionError'>, ConnectionError(...))
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 7 source files that are out of date
updating environment: 7 added, 0 changed, 0 removed
reading sources... [ 14%] howto
reading sources... [ 28%] index
reading sources... [ 42%] pbalign
reading sources... [ 57%] pbalign.alignservice
reading sources... [ 71%] pbalign.tasks
reading sources... [ 85%] pbalign.tools
reading sources... [100%] pbalign.utils

WARNING: autodoc: failed to import module 'bampostservice' from module 'pbalign'; the following exception was raised:
No module named 'pbalign'
WARNING: autodoc: failed to import module 'ccs' from module 'pbalign'; the following exception was raised:
No module named 'pbalign'
WARNING: autodoc: failed to import module 'filterservice' from module 'pbalign'; the following exception was raised:
No module named 'pbalign'
WARNING: autodoc: failed to import module 'options' from module 'pbalign'; the following exception was raised:
No module named 'pbalign'
WARNING: autodoc: failed to import module 'pbalignfiles' from module 'pbalign'; the following exception was raised:
No module named 'pbalign'
WARNING: autodoc: failed to import module 'pbalignrunner' from module 'pbalign'; the following exception was raised:
No module named 'pbalign'
WARNING: autodoc: failed to import module 'service' from module 'pbalign'; the following exception was raised:
No module named 'pbalign'
WARNING: autodoc: failed to import module 'pbalign'; the following exception was raised:
No module named 'pbalign'
WARNING: autodoc: failed to import module 'alignservice.align' from module 'pbalign'; the following exception was raised:
No module named 'pbalign'
WARNING: autodoc: failed to import module 'alignservice.blasr' from module 'pbalign'; the following exception was raised:
No module named 'pbalign'
WARNING: autodoc: failed to import module 'alignservice.bowtie' from module 'pbalign'; the following exception was raised:
No module named 'pbalign'
WARNING: autodoc: failed to import module 'alignservice.fastabasedalign' from module 'pbalign'; the following exception was raised:
No module named 'pbalign'
WARNING: autodoc: failed to import module 'alignservice.gmap' from module 'pbalign'; the following exception was raised:
No module named 'pbalign'
WARNING: autodoc: failed to import module 'alignservice' from module 'pbalign'; the following exception was raised:
No module named 'pbalign'
WARNING: autodoc: failed to import module 'tasks.align_minorvariants' from module 'pbalign'; the following exception was raised:
No module named 'pbalign'
WARNING: autodoc: failed to import module 'tasks' from module 'pbalign'; the following exception was raised:
No module named 'pbalign'
WARNING: autodoc: failed to import module 'tools.createChemistryHeader' from module 'pbalign'; the following exception was raised:
No module named 'pbalign'
WARNING: autodoc: failed to import module 'tools.extractUnmappedSubreads' from module 'pbalign'; the following exception was raised:
No module named 'pbalign'
WARNING: autodoc: failed to import module 'tools.loadChemistry' from module 'pbalign'; the following exception was raised:
No module named 'pbalign'
WARNING: autodoc: failed to import module 'tools.mask_aligned_reads' from module 'pbalign'; the following exception was raised:
No module named 'pbalign'
WARNING: autodoc: failed to import module 'tools' from module 'pbalign'; the following exception was raised:
No module named 'pbalign'
WARNING: autodoc: failed to import module 'utils.RgnH5IO' from module 'pbalign'; the following exception was raised:
No module named 'pbalign'
WARNING: autodoc: failed to import module 'utils.fileutil' from module 'pbalign'; the following exception was raised:
No module named 'pbalign'
WARNING: autodoc: failed to import module 'utils.progutil' from module 'pbalign'; the following exception was raised:
No module named 'pbalign'
WARNING: autodoc: failed to import module 'utils.tempfileutil' from module 'pbalign'; the following exception was raised:
No module named 'pbalign'
WARNING: autodoc: failed to import module 'utils' from module 'pbalign'; the following exception was raised:
No module named 'pbalign'
looking for now-outdated files... none found
pickling environment... done
checking consistency... /<<PKGBUILDDIR>>/doc/pbalign.rst: WARNING: document isn't included in any toctree
done
preparing documents... done
writing output... [ 14%] howto
writing output... [ 28%] index
writing output... [ 42%] pbalign
writing output... [ 57%] pbalign.alignservice
writing output... [ 71%] pbalign.tasks
writing output... [ 85%] pbalign.tools
writing output... [100%] pbalign.utils

generating indices... genindex
writing additional pages... search
copying static files... WARNING: html_static_path entry '/<<PKGBUILDDIR>>/doc/_static' does not exist
done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 30 warnings.

The HTML pages are in _build/html.

Build finished. The HTML pages are in _build/html.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_test -O--buildsystem=pybuild
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build; python2.7 -m nose -v tests

----------------------------------------------------------------------
Ran 0 tests in 0.001s

OK
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary
dh binary --with=python2 --buildsystem=pybuild
   dh_testroot -O--buildsystem=pybuild
   dh_prep -O--buildsystem=pybuild
   dh_auto_install -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python setup.py install --root /<<PKGBUILDDIR>>/debian/python-pbalign 
/usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'test_requires'
  warnings.warn(msg)
running install
running build
running build_py
running install_lib
creating /<<PKGBUILDDIR>>/debian/python-pbalign
creating /<<PKGBUILDDIR>>/debian/python-pbalign/usr
creating /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib
creating /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7
creating /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages
creating /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/bampostservice.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/service.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/ccs.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign
creating /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tools
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/tools/loadChemistry.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tools
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/tools/extractUnmappedSubreads.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tools
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/tools/__init__.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tools
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/tools/createChemistryHeader.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tools
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/tools/mask_aligned_reads.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tools
creating /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/alignservice/gmap.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/alignservice/align.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/alignservice/blasr.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/alignservice/fastabasedalign.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/alignservice/__init__.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/alignservice/bowtie.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/__init__.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign
creating /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/utils
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/utils/RgnH5IO.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/utils
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/utils/fileutil.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/utils
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/utils/tempfileutil.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/utils
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/utils/progutil.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/utils
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/utils/__init__.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/utils
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/filterservice.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/options.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/pbalignrunner.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign
creating /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tasks
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/tasks/align_minorvariants.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tasks
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/tasks/__init__.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tasks
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_pbalign/build/pbalign/pbalignfiles.py -> /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/bampostservice.py to bampostservice.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/service.py to service.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/ccs.py to ccs.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tools/loadChemistry.py to loadChemistry.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tools/extractUnmappedSubreads.py to extractUnmappedSubreads.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tools/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tools/createChemistryHeader.py to createChemistryHeader.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tools/mask_aligned_reads.py to mask_aligned_reads.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice/gmap.py to gmap.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice/align.py to align.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice/blasr.py to blasr.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice/fastabasedalign.py to fastabasedalign.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice/bowtie.py to bowtie.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/utils/RgnH5IO.py to RgnH5IO.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/utils/fileutil.py to fileutil.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/utils/tempfileutil.py to tempfileutil.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/utils/progutil.py to progutil.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/utils/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/filterservice.py to filterservice.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/options.py to options.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/pbalignrunner.py to pbalignrunner.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tasks/align_minorvariants.py to align_minorvariants.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tasks/__init__.py to __init__.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/pbalignfiles.py to pbalignfiles.pyc
running install_egg_info
running egg_info
creating pbalign.egg-info
writing requirements to pbalign.egg-info/requires.txt
writing pbalign.egg-info/PKG-INFO
writing top-level names to pbalign.egg-info/top_level.txt
writing dependency_links to pbalign.egg-info/dependency_links.txt
writing entry points to pbalign.egg-info/entry_points.txt
writing manifest file 'pbalign.egg-info/SOURCES.txt'
reading manifest file 'pbalign.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'pbalign.egg-info/SOURCES.txt'
Copying pbalign.egg-info to /<<PKGBUILDDIR>>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign-0.3.2.egg-info
Skipping SOURCES.txt
running install_scripts
Installing pbalign script to /<<PKGBUILDDIR>>/debian/python-pbalign/usr/bin
Installing extractUnmappedSubreads.py script to /<<PKGBUILDDIR>>/debian/python-pbalign/usr/bin
Installing createChemistryHeader.py script to /<<PKGBUILDDIR>>/debian/python-pbalign/usr/bin
Installing loadChemistry.py script to /<<PKGBUILDDIR>>/debian/python-pbalign/usr/bin
Installing maskAlignedReads.py script to /<<PKGBUILDDIR>>/debian/python-pbalign/usr/bin
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
# Remove .py suffix from scripts (we'll make symlinks to replace them)
for script in extractUnmappedSubreads			\
              loadChemistry				\
              createChemistryHeader			\
              maskAlignedReads;				\
do							\
    mv /<<PKGBUILDDIR>>/debian/python-pbalign/usr/bin/$script.py /<<PKGBUILDDIR>>/debian/python-pbalign/usr/bin/$script;	\
#	    mv /<<PKGBUILDDIR>>/debian/pbalign/usr/share/man/man1/$script.py.1 /<<PKGBUILDDIR>>/debian/pbalign/usr/share/man/man1/$script.1;	\
done
# Place executables in the pbalign package
mkdir -p /<<PKGBUILDDIR>>/debian/pbalign/usr/bin
mv /<<PKGBUILDDIR>>/debian/python-pbalign/usr/bin/* /<<PKGBUILDDIR>>/debian/pbalign/usr/bin
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -O--buildsystem=pybuild
   dh_installchangelogs -O--buildsystem=pybuild
   dh_installman -O--buildsystem=pybuild
   dh_python2 -O--buildsystem=pybuild
I: dh_python2 tools:113: replacing shebang in debian/pbalign/usr/bin/createChemistryHeader
I: dh_python2 tools:113: replacing shebang in debian/pbalign/usr/bin/loadChemistry
I: dh_python2 tools:113: replacing shebang in debian/pbalign/usr/bin/maskAlignedReads
I: dh_python2 tools:113: replacing shebang in debian/pbalign/usr/bin/pbalign
I: dh_python2 tools:113: replacing shebang in debian/pbalign/usr/bin/extractUnmappedSubreads
   dh_installinit -O--buildsystem=pybuild
   dh_perl -O--buildsystem=pybuild
   dh_link -O--buildsystem=pybuild
   dh_strip_nondeterminism -O--buildsystem=pybuild
   dh_compress -O--buildsystem=pybuild
   dh_fixperms -O--buildsystem=pybuild
   dh_missing -O--buildsystem=pybuild
   dh_installdeb -O--buildsystem=pybuild
   dh_gencontrol -O--buildsystem=pybuild
dpkg-gencontrol: warning: package python-pbalign: substitution variable ${python:Provides} unused, but is defined
dpkg-gencontrol: warning: package python-pbalign: substitution variable ${python:Versions} unused, but is defined
   dh_md5sums -O--buildsystem=pybuild
   dh_builddeb -O--buildsystem=pybuild
INFO: pkgstriptranslations version 143
INFO: pkgstriptranslations version 143
INFO: pkgstriptranslations version 143
pkgstriptranslations: processing pbalign-doc (in debian/pbalign-doc); do_strip: , oemstrip: 
pkgstriptranslations: processing pbalign (in debian/pbalign); do_strip: , oemstrip: 
pkgstriptranslations: processing python-pbalign (in debian/python-pbalign); do_strip: , oemstrip: 
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgstripfiles: processing control file: debian/pbalign-doc/DEBIAN/control, package pbalign-doc, directory debian/pbalign-doc
pkgstripfiles: processing control file: debian/python-pbalign/DEBIAN/control, package python-pbalign, directory debian/python-pbalign
INFO: pkgstripfiles: waiting for lock (pbalign-doc) ...
INFO: pkgstripfiles: waiting for lock (python-pbalign) ...
INFO: pkgstripfiles: waiting for lock (pbalign-doc) ...
INFO: pkgstripfiles: waiting for lock (python-pbalign) ...
INFO: pkgstripfiles: waiting for lock (pbalign-doc) ...
INFO: pkgstripfiles: waiting for lock (python-pbalign) ...
INFO: pkgstripfiles: waiting for lock (pbalign-doc) ...
INFO: pkgstripfiles: waiting for lock (python-pbalign) ...
INFO: pkgstripfiles: waiting for lock (pbalign-doc) ...
INFO: pkgstripfiles: waiting for lock (python-pbalign) ...
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgstripfiles: processing control file: debian/pbalign/DEBIAN/control, package pbalign, directory debian/pbalign
INFO: pkgstripfiles: waiting for lock (pbalign-doc) ...
INFO: pkgstripfiles: waiting for lock (python-pbalign) ...
Searching for duplicated docs in dependency python-pbalign...
  symlinking changelog.Debian.gz in pbalign to file in python-pbalign
pkgstripfiles: Running PNG optimization (using 4 cpus) for package pbalign ...
pkgstripfiles: No PNG files.
dpkg-deb: building package 'pbalign' in '../pbalign_0.3.2-1_all.deb'.
INFO: pkgstripfiles: waiting for lock (pbalign-doc) ...
pkgstripfiles: Running PNG optimization (using 4 cpus) for package python-pbalign ...
pkgstripfiles: No PNG files.
dpkg-deb: building package 'python-pbalign' in '../python-pbalign_0.3.2-1_all.deb'.
pkgstripfiles: Disabled PNG optimization for -doc package pbalign-doc (to save build time)
dpkg-deb: building package 'pbalign-doc' in '../pbalign-doc_0.3.2-1_all.deb'.
 dpkg-genbuildinfo --build=binary
 dpkg-genchanges --build=binary -mLaunchpad Build Daemon <buildd@lgw01-amd64-048.buildd> >../pbalign_0.3.2-1_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20190127-2329

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


pbalign_0.3.2-1_amd64.changes:
------------------------------

Format: 1.8
Date: Sat, 26 Jan 2019 13:20:46 +0100
Source: pbalign
Binary: pbalign python-pbalign pbalign-doc
Architecture: all
Version: 0.3.2-1
Distribution: disco-proposed
Urgency: medium
Maintainer: Launchpad Build Daemon <buildd@lgw01-amd64-048.buildd>
Changed-By: Steffen Moeller <moeller@debian.org>
Description:
 pbalign    - map Pacific Biosciences reads to reference DNA sequences
 pbalign-doc - documentation for pbalign
 python-pbalign - map Pacific Biosciences reads to reference DNA sequences (Python2
Changes:
 pbalign (0.3.2-1) unstable; urgency=medium
 .
   * Team upload
 .
   * Standards-Version: 4.2.1
   * d/rules: clean up all build remnants
 .
   * TODO: Python3-version, added README.Debian as a reminder
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+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


pbalign-doc_0.3.2-1_all.deb
---------------------------

 new debian package, version 2.0.
 size 41528 bytes: control archive=1892 bytes.
     732 bytes,    19 lines      control              
    3485 bytes,    43 lines      md5sums              
 Package: pbalign-doc
 Source: pbalign
 Version: 0.3.2-1
 Architecture: all
 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
 Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 235
 Depends: libjs-jquery, libjs-underscore
 Section: doc
 Priority: optional
 Homepage: https://github.com/PacificBiosciences/pbalign
 Description: documentation for pbalign
  pbalign aligns PacBio reads to reference sequences, filters aligned
  reads according to user-specific filtering criteria, and converts the
  output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5)
  format.
  .
  pbalign is part of the SMRTAnalysis suite. This package contains its
  documentation

drwxr-xr-x root/root         0 2019-01-26 12:20 ./
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/share/
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/share/doc-base/
-rw-r--r-- root/root       225 2019-01-26 12:19 ./usr/share/doc-base/pbalign
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/share/doc/
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/share/doc/pbalign-doc/
-rw-r--r-- root/root       769 2019-01-26 12:20 ./usr/share/doc/pbalign-doc/changelog.Debian.gz
-rw-r--r-- root/root      2012 2019-01-26 12:19 ./usr/share/doc/pbalign-doc/copyright
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/share/doc/pbalign/
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/share/doc/pbalign/html/
-rw-r--r-- root/root       230 2019-01-26 12:20 ./usr/share/doc/pbalign/html/.buildinfo
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/share/doc/pbalign/html/_sources/
-rw-r--r-- root/root     13299 2018-11-27 19:53 ./usr/share/doc/pbalign/html/_sources/howto.rst.txt
-rw-r--r-- root/root       289 2018-11-27 19:53 ./usr/share/doc/pbalign/html/_sources/index.rst.txt
-rw-r--r-- root/root      1090 2019-01-26 12:20 ./usr/share/doc/pbalign/html/_sources/pbalign.alignservice.rst.txt
-rw-r--r-- root/root      1309 2019-01-26 12:20 ./usr/share/doc/pbalign/html/_sources/pbalign.rst.txt
-rw-r--r-- root/root       382 2019-01-26 12:20 ./usr/share/doc/pbalign/html/_sources/pbalign.tasks.rst.txt
-rw-r--r-- root/root       954 2019-01-26 12:20 ./usr/share/doc/pbalign/html/_sources/pbalign.tools.rst.txt
-rw-r--r-- root/root       830 2019-01-26 12:20 ./usr/share/doc/pbalign/html/_sources/pbalign.utils.rst.txt
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/share/doc/pbalign/html/_static/
-rw-r--r-- root/root       673 2018-12-16 11:32 ./usr/share/doc/pbalign/html/_static/ajax-loader.gif
-rw-r--r-- root/root     10912 2019-01-26 12:20 ./usr/share/doc/pbalign/html/_static/basic.css
-rw-r--r-- root/root      4146 2019-01-26 12:20 ./usr/share/doc/pbalign/html/_static/classic.css
-rw-r--r-- root/root       756 2018-12-18 16:18 ./usr/share/doc/pbalign/html/_static/comment-bright.png
-rw-r--r-- root/root       829 2018-12-18 16:18 ./usr/share/doc/pbalign/html/_static/comment-close.png
-rw-r--r-- root/root       641 2018-12-18 16:18 ./usr/share/doc/pbalign/html/_static/comment.png
-rw-r--r-- root/root        28 2018-12-18 16:18 ./usr/share/doc/pbalign/html/_static/default.css
-rw-r--r-- root/root      9313 2018-12-18 16:18 ./usr/share/doc/pbalign/html/_static/doctools.js
-rw-r--r-- root/root       307 2019-01-26 12:20 ./usr/share/doc/pbalign/html/_static/documentation_options.js
-rw-r--r-- root/root       222 2018-12-18 16:18 ./usr/share/doc/pbalign/html/_static/down-pressed.png
-rw-r--r-- root/root       202 2018-12-18 16:18 ./usr/share/doc/pbalign/html/_static/down.png
-rw-r--r-- root/root       286 2018-12-18 16:18 ./usr/share/doc/pbalign/html/_static/file.png
lrwxrwxrwx root/root         0 2019-01-26 12:20 ./usr/share/doc/pbalign/html/_static/jquery.js -> ../../../../javascript/jquery/jquery.js
-rw-r--r-- root/root     10847 2019-01-26 12:20 ./usr/share/doc/pbalign/html/_static/language_data.js
-rw-r--r-- root/root        90 2018-12-18 16:18 ./usr/share/doc/pbalign/html/_static/minus.png
-rw-r--r-- root/root        90 2018-12-18 16:18 ./usr/share/doc/pbalign/html/_static/plus.png
-rw-r--r-- root/root      4395 2019-01-26 12:20 ./usr/share/doc/pbalign/html/_static/pygments.css
-rw-r--r-- root/root     15059 2018-12-25 14:55 ./usr/share/doc/pbalign/html/_static/searchtools.js
-rw-r--r-- root/root      4803 2019-01-26 12:20 ./usr/share/doc/pbalign/html/_static/sidebar.js
lrwxrwxrwx root/root         0 2019-01-26 12:20 ./usr/share/doc/pbalign/html/_static/underscore.js -> ../../../../javascript/underscore/underscore.js
-rw-r--r-- root/root       214 2018-12-18 16:18 ./usr/share/doc/pbalign/html/_static/up-pressed.png
-rw-r--r-- root/root       203 2018-12-18 16:18 ./usr/share/doc/pbalign/html/_static/up.png
-rw-r--r-- root/root     25355 2018-12-18 16:18 ./usr/share/doc/pbalign/html/_static/websupport.js
-rw-r--r-- root/root      2950 2019-01-26 12:20 ./usr/share/doc/pbalign/html/genindex.html
-rw-r--r-- root/root     44243 2019-01-26 12:20 ./usr/share/doc/pbalign/html/howto.html
-rw-r--r-- root/root      5439 2019-01-26 12:20 ./usr/share/doc/pbalign/html/index.html
-rw-r--r-- root/root       314 2019-01-26 12:20 ./usr/share/doc/pbalign/html/objects.inv
-rw-r--r-- root/root      5719 2019-01-26 12:20 ./usr/share/doc/pbalign/html/pbalign.alignservice.html
-rw-r--r-- root/root      9971 2019-01-26 12:20 ./usr/share/doc/pbalign/html/pbalign.html
-rw-r--r-- root/root      4322 2019-01-26 12:20 ./usr/share/doc/pbalign/html/pbalign.tasks.html
-rw-r--r-- root/root      5427 2019-01-26 12:20 ./usr/share/doc/pbalign/html/pbalign.tools.html
-rw-r--r-- root/root      5227 2019-01-26 12:20 ./usr/share/doc/pbalign/html/pbalign.utils.html
-rw-r--r-- root/root      3460 2019-01-26 12:20 ./usr/share/doc/pbalign/html/search.html
-rw-r--r-- root/root      4431 2019-01-26 12:20 ./usr/share/doc/pbalign/html/searchindex.js


pbalign_0.3.2-1_all.deb
-----------------------

 new debian package, version 2.0.
 size 8716 bytes: control archive=1184 bytes.
     835 bytes,    19 lines      control              
    1262 bytes,    18 lines      md5sums              
 Package: pbalign
 Version: 0.3.2-1
 Architecture: all
 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
 Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 44
 Depends: python:any, python-pbalign (= 0.3.2-1), python-pkg-resources, blasr (>= 5.3+0)
 Recommends: python-pbh5tools, hdf5-tools
 Suggests: bowtie2, gmap, pbalign-doc
 Section: python
 Priority: optional
 Homepage: https://github.com/PacificBiosciences/pbalign
 Description: map Pacific Biosciences reads to reference DNA sequences
  pbalign aligns PacBio reads to reference sequences, filters aligned
  reads according to user-specific filtering criteria, and converts the
  output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5)
  format.
  .
  This package is part of the SMRTAnalysis suite.

drwxr-xr-x root/root         0 2019-01-26 12:20 ./
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/bin/
-rwxr-xr-x root/root       417 2019-01-26 12:20 ./usr/bin/createChemistryHeader
lrwxrwxrwx root/root         0 2019-01-26 12:20 ./usr/bin/createChemistryHeader.py -> createChemistryHeader
-rwxr-xr-x root/root       421 2019-01-26 12:20 ./usr/bin/extractUnmappedSubreads
lrwxrwxrwx root/root         0 2019-01-26 12:20 ./usr/bin/extractUnmappedSubreads.py -> extractUnmappedSubreads
-rwxr-xr-x root/root       401 2019-01-26 12:20 ./usr/bin/loadChemistry
lrwxrwxrwx root/root         0 2019-01-26 12:20 ./usr/bin/loadChemistry.py -> loadChemistry
-rwxr-xr-x root/root       407 2019-01-26 12:20 ./usr/bin/maskAlignedReads
lrwxrwxrwx root/root         0 2019-01-26 12:20 ./usr/bin/maskAlignedReads.py -> maskAlignedReads
-rwxr-xr-x root/root       383 2019-01-26 12:20 ./usr/bin/pbalign
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/share/
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/share/doc/
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/share/doc/pbalign/
-rw-r--r-- root/root        64 2019-01-26 12:20 ./usr/share/doc/pbalign/README.Debian
-rw-r--r-- root/root      1399 2018-11-27 19:53 ./usr/share/doc/pbalign/README.md
lrwxrwxrwx root/root         0 2019-01-26 12:20 ./usr/share/doc/pbalign/changelog.Debian.gz -> ../python-pbalign/changelog.Debian.gz
-rw-r--r-- root/root      2012 2019-01-26 12:19 ./usr/share/doc/pbalign/copyright
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/share/man/
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/share/man/man1/
-rw-r--r-- root/root       630 2019-01-26 12:20 ./usr/share/man/man1/createChemistryHeader.1.gz
lrwxrwxrwx root/root         0 2019-01-26 12:20 ./usr/share/man/man1/createChemistryHeader.py.1.gz -> createChemistryHeader.1.gz
-rw-r--r-- root/root       565 2019-01-26 12:20 ./usr/share/man/man1/extractUnmappedSubreads.1.gz
lrwxrwxrwx root/root         0 2019-01-26 12:20 ./usr/share/man/man1/extractUnmappedSubreads.py.1.gz -> extractUnmappedSubreads.1.gz
-rw-r--r-- root/root       437 2019-01-26 12:20 ./usr/share/man/man1/loadChemistry.1.gz
lrwxrwxrwx root/root         0 2019-01-26 12:20 ./usr/share/man/man1/loadChemistry.py.1.gz -> loadChemistry.1.gz
-rw-r--r-- root/root       632 2019-01-26 12:20 ./usr/share/man/man1/maskAlignedReads.1.gz
lrwxrwxrwx root/root         0 2019-01-26 12:20 ./usr/share/man/man1/maskAlignedReads.py.1.gz -> maskAlignedReads.1.gz
-rw-r--r-- root/root      2290 2019-01-26 12:20 ./usr/share/man/man1/pbalign.1.gz
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/share/man/py/
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/share/man/py/man1/
-rw-r--r-- root/root       630 2019-01-26 12:20 ./usr/share/man/py/man1/createChemistryHeader.1.gz
-rw-r--r-- root/root       565 2019-01-26 12:20 ./usr/share/man/py/man1/extractUnmappedSubreads.1.gz
-rw-r--r-- root/root       437 2019-01-26 12:20 ./usr/share/man/py/man1/loadChemistry.1.gz
-rw-r--r-- root/root       632 2019-01-26 12:20 ./usr/share/man/py/man1/maskAlignedReads.1.gz
-rw-r--r-- root/root      2290 2019-01-26 12:20 ./usr/share/man/py/man1/pbalign.1.gz


python-pbalign_0.3.2-1_all.deb
------------------------------

 new debian package, version 2.0.
 size 37420 bytes: control archive=2008 bytes.
     943 bytes,    21 lines      control              
    3126 bytes,    33 lines      md5sums              
     164 bytes,     9 lines   *  postinst             #!/bin/sh
     267 bytes,    14 lines   *  prerm                #!/bin/sh
 Package: python-pbalign
 Source: pbalign
 Version: 0.3.2-1
 Architecture: all
 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
 Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 224
 Depends: python-pbcommand, python-pbcore, python-pysam, python:any (<< 2.8), python:any (>= 2.7~), blasr (>= 5.3+0)
 Recommends: python-pbh5tools, hdf5-tools
 Suggests: bowtie2, gmap, pbalign-doc
 Section: python
 Priority: optional
 Homepage: https://github.com/PacificBiosciences/pbalign
 Description: map Pacific Biosciences reads to reference DNA sequences (Python2)
  pbalign aligns PacBio reads to reference sequences, filters aligned
  reads according to user-specific filtering criteria, and converts the
  output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5)
  format.
  .
  pbalign is part of the SMRTAnalysis suite. This package provides the
  Python library backend.

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drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/lib/
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/lib/python2.7/
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/lib/python2.7/dist-packages/
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/lib/python2.7/dist-packages/pbalign-0.3.2.egg-info/
-rw-r--r-- root/root       226 2019-01-26 12:20 ./usr/lib/python2.7/dist-packages/pbalign-0.3.2.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2019-01-26 12:20 ./usr/lib/python2.7/dist-packages/pbalign-0.3.2.egg-info/dependency_links.txt
-rw-r--r-- root/root       308 2019-01-26 12:20 ./usr/lib/python2.7/dist-packages/pbalign-0.3.2.egg-info/entry_points.txt
-rw-r--r-- root/root         0 2019-01-26 12:20 ./usr/lib/python2.7/dist-packages/pbalign-0.3.2.egg-info/requires.txt
-rw-r--r-- root/root         8 2019-01-26 12:20 ./usr/lib/python2.7/dist-packages/pbalign-0.3.2.egg-info/top_level.txt
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/lib/python2.7/dist-packages/pbalign/
-rw-r--r-- root/root      2895 2018-11-27 19:53 ./usr/lib/python2.7/dist-packages/pbalign/__init__.py
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/lib/python2.7/dist-packages/pbalign/alignservice/
-rw-r--r-- root/root      1927 2018-11-27 19:53 ./usr/lib/python2.7/dist-packages/pbalign/alignservice/__init__.py
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-rw-r--r-- root/root     10869 2018-11-27 19:53 ./usr/lib/python2.7/dist-packages/pbalign/alignservice/bowtie.py
-rw-r--r-- root/root      4177 2018-11-27 19:53 ./usr/lib/python2.7/dist-packages/pbalign/alignservice/fastabasedalign.py
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drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/lib/python2.7/dist-packages/pbalign/tasks/
-rw-r--r-- root/root         0 2018-11-27 19:53 ./usr/lib/python2.7/dist-packages/pbalign/tasks/__init__.py
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drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/lib/python2.7/dist-packages/pbalign/tools/
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-rw-r--r-- root/root     10037 2018-11-27 19:53 ./usr/lib/python2.7/dist-packages/pbalign/utils/tempfileutil.py
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/share/
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/share/doc/
drwxr-xr-x root/root         0 2019-01-26 12:20 ./usr/share/doc/python-pbalign/
-rw-r--r-- root/root       769 2019-01-26 12:20 ./usr/share/doc/python-pbalign/changelog.Debian.gz
-rw-r--r-- root/root      2012 2019-01-26 12:19 ./usr/share/doc/python-pbalign/copyright


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| Post Build                                                                   |
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+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not removing build depends: as requested

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build-Space: 3100
Build-Time: 15
Distribution: disco-proposed
Host Architecture: amd64
Install-Time: 22
Job: pbalign_0.3.2-1.dsc
Machine Architecture: amd64
Package: pbalign
Package-Time: 39
Source-Version: 0.3.2-1
Space: 3100
Status: successful
Version: 0.3.2-1
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Finished at 20190127-2329
Build needed 00:00:39, 3100k disc space
RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16326344
Scanning for processes to kill in build PACKAGEBUILD-16326344