Ubuntu
pal2nal package

pal2nal 14.1-3 source package in Ubuntu

Changelog

pal2nal (14.1-3) unstable; urgency=medium

  * Team Upload.

  [ Steffen Möller ]
  * Added ref to conda

  [ Nilesh Patra ]
  * Add autopkgtests
  * Add relevant examples
  * Bump compat version to 13
  * Add "Rules-Requires-Root:no"
  * Update metadata URLs
  * Bump standards version to 4.5.0

 -- Nilesh Patra <email address hidden>  Thu, 02 Jul 2020 00:13:13 +0530

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
all
Section:
misc
Urgency:
Medium Urgency

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Builds

Groovy: [FULLYBUILT] amd64

Downloads

File Size SHA-256 Checksum
pal2nal_14.1-3.dsc 1.9 KiB fb3b0abff2adb9960be00ef71336225b05e7732850e01d6b78ebf86234dbdaf0
pal2nal_14.1.orig.tar.gz 16.6 KiB d01f570275ea8367f859b8997ef7077858c0755c09118aa33eea27f58ed429bc
pal2nal_14.1-3.debian.tar.xz 4.5 KiB 80678a9493c7c04f829fe4418963b8ff1597d4901328aa9456feb543c1175e12

Available diffs

No changes file available.

Binary packages built by this source

pal2nal: converts proteins to genomic DNA alignment

 PAL2NAL is a program that converts a multiple sequence alignment
 of proteins and the corresponding DNA (or mRNA) sequences into
 a codon-based DNA alignment. The program automatically assigns
 the corresponding codon sequence even if the input DNA sequence
 has mismatches with the input protein sequence, or contains UTRs,
 polyA tails. It can also deal with frame shifts in the input
 alignment, which is suitable for the analysis of pseudogenes.
 The resulting codon-based DNA alignment can further be subjected
 to the calculation of synonymous (Ks) and non-synonymous (Ka)
 substitution rates.