openms 2.6.0+cleaned1-3build4 source package in Ubuntu
Changelog
openms (2.6.0+cleaned1-3build4) mantic; urgency=medium * Rebuild against new coinor-libcbc3.1. -- Gianfranco Costamagna <email address hidden> Fri, 04 Aug 2023 08:20:05 +0200
Upload details
- Uploaded by:
- Gianfranco Costamagna
- Uploaded to:
- Mantic
- Original maintainer:
- Debichem Team
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section | |
---|---|---|---|---|
Mantic | release | universe | misc |
Downloads
File | Size | SHA-256 Checksum |
---|---|---|
openms_2.6.0+cleaned1.orig.tar.gz | 203.4 MiB | c58c12b00c14d22d548839c0d074a76e4884308e2cb23add3bfc1a04cebbf0af |
openms_2.6.0+cleaned1-3build4.debian.tar.xz | 754.0 KiB | 93739324d81286254fa83fc5b5916e2f9d39803fe20c90fd88745620165e51de |
openms_2.6.0+cleaned1-3build4.dsc | 2.9 KiB | 3ce9f42cf5c4504300047176a1e93d2cccf4443177adc78a37c73a07e05faac3 |
Available diffs
Binary packages built by this source
- libopenms-dev: library for LC/MS data management and analysis - dev files
OpenMS is a library for LC/MS data management and analysis. OpenMS
offers an infrastructure for the development of mass
spectrometry-related software and powerful 2D and 3D visualization
solutions.
.
OpenMS offers analyses for various quantitation protocols, including
label-free quantitation, SILAC, iTRAQ, SRM, SWATH…
.
It provides built-in algorithms for de-novo identification and
database search, as well as adapters to other state-of-the art tools
like X!Tandem, Mascot, OMSSA…
.
OpenMS supports the Proteomics Standard Initiative (PSI) formats for
MS data and supports easy integration of tools into workflow engines
like Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept
and a unified parameter handling.
.
This package ships the library development files.
- libopenms2.6.0: library for LC/MS data management and analysis - runtime
OpenMS is a library for LC/MS data management and analysis. OpenMS
offers an infrastructure for the development of mass
spectrometry-related software and powerful 2D and 3D visualization
solutions.
.
OpenMS offers analyses for various quantitation protocols, including
label-free quantitation, SILAC, iTRAQ, SRM, SWATH…
.
It provides built-in algorithms for de-novo identification and
database search, as well as adapters to other state-of-the art tools
like X!Tandem, Mascot, OMSSA…
.
OpenMS supports the Proteomics Standard Initiative (PSI) formats for
MS data and supports easy integration of tools into workflow engines
like Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept
and a unified parameter handling.
- libopenms2.6.0-dbgsym: debug symbols for libopenms2.6.0
- openms: package for LC/MS data management and analysis
OpenMS is a package for LC/MS data management and analysis. OpenMS
offers an infrastructure for the development of mass
spectrometry-related software and powerful 2D and 3D visualization
solutions.
.
TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis
of HPLC/MS data. It consists of a set of numerous small applications
that can be chained together to create analysis pipelines tailored
for a specific problem.
.
This package is a metapackage that depends on both the libopenms
library package (libOpenMS and libOpenMS_GUI) and the OpenMS
Proteomic Pipeline (topp) package.
- openms-common: package for LC/MS data management and analysis - shared data
OpenMS is a package for LC/MS data management and analysis. OpenMS
offers an infrastructure for the development of mass
spectrometry-related software and powerful 2D and 3D visualization
solutions.
.
OpenMS offers analyses for various quantitation protocols, including
label-free quantitation, SILAC, iTRAQ, SRM, SWATH…
.
It provides built-in algorithms for de-novo identification and
database search, as well as adapters to other state-of-the art tools
like X!Tandem, Mascot, OMSSA…
.
OpenMS supports the Proteomics Standard Initiative (PSI) formats for
MS data and supports easy integration of tools into workflow engines
like Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept
and a unified parameter handling.
.
This package brings data shared by the different binaries of the
OpenMS software package (libOpenMS and libOpenMS_GUI libraries and
the OpenMS Proteomic Pipeline binary tools).
- openms-doc: package for LC/MS data management and analysis - documentation
OpenMS is a package for LC/MS data management and analysis. OpenMS
offers an infrastructure for the development of mass
spectrometry-related software and powerful 2D and 3D visualization
solutions.
.
OpenMS offers analyses for various quantitation protocols, including
label-free quantitation, SILAC, iTRAQ, SRM, SWATH…
.
It provides built-in algorithms for de-novo identification and
database search, as well as adapters to other state-of-the art tools
like X!Tandem, Mascot, OMSSA…
.
OpenMS supports the Proteomics Standard Initiative (PSI) formats for
MS data and supports easy integration of tools into workflow engines
like Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept
and a unified parameter handling.
.
This package brings full documentation for both the libopenms library
package (libOpenMS and libOpenMS_GUI) and the OpenMS Proteomic
Pipeline (topp) package.
- topp: set of programs implementing The OpenMS Proteomic Pipeline
TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis
of HPLC/MS data. It consists of a set of numerous small applications
that can be chained together to create analysis pipelines tailored
for a specific problem. The applications make use of the libopenms
library. Some examples of these applications are :
.
- TOPPView: A viewer for mass spectrometry data.
- TOPPAS: An assistant for GUI-driven TOPP workflow design.
- DTAExtractor: Extracts spectra of an MS run file to several
files in DTA format.
- FileConverter: Converts between different MS file formats.
- FileFilter: Extracts or manipulates portions of data from peak,
feature or consensus feature files.
- SpectraMerger: Merges spectra from an LC/MS map, either by
precursor or by RT blocks.
- BaselineFilter: Removes the baseline from profile spectra using a
top-hat filter.
- InternalCalibration: Applies an internal calibration.
- PTModel: Trains a model for the prediction of proteotypic
peptides from a training set.
- RTPredict: Predicts retention times for peptides using a model
trained by RTModel.
- ExecutePipeline: Executes workflows created by TOPPAS.
- topp-dbgsym: debug symbols for topp