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openms package

openms 1.11.1-3 source package in Ubuntu

Changelog

openms (1.11.1-3) unstable; urgency=low


  * remove version number from libbost development package names;
  * ensure that AUTHORS is correctly shipped in all packages.
  
 -- Filippo Rusconi <email address hidden>  Fri, 20 Dec 2013 11:30:16 +0100

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Uploaded by:
Debichem Team
Uploaded to:
Sid
Original maintainer:
Debichem Team
Architectures:
any all
Section:
misc
Urgency:
Low Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Trusty release universe misc

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File Size SHA-256 Checksum
openms_1.11.1-3.dsc 2.1 KiB 5df9eae90a5522be7e8319b7a11c6a6e703c5b4b896cbb8f24108cef0c9e4bf2
openms_1.11.1.orig.tar.bz2 106.4 MiB ac0a6c0c0054b964be1dcedb3dd6c582b348c3d5bd4a6d7da6ab2561f733d19d
openms_1.11.1-3.debian.tar.gz 14.6 KiB 04e22a8efa2bd535c678aa7e0086db7b5929d13e55254d049a9b06ec2a8c7616

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Binary packages built by this source

libopenms-dev: No summary available for libopenms-dev in ubuntu utopic.

No description available for libopenms-dev in ubuntu utopic.

libopenms1.11: No summary available for libopenms1.11 in ubuntu utopic.

No description available for libopenms1.11 in ubuntu utopic.

openms: No summary available for openms in ubuntu utopic.

No description available for openms in ubuntu utopic.

openms-common: package for LC/MS data management and analysis - shared data

 OpenMS is a package for LC/MS data management and analysis. OpenMS
 offers an infrastructure for the development of mass
 spectrometry-related software and powerful 2D and 3D visualization
 solutions.
 .
 OpenMS offers analyses for various quantitation protocols, including
 label-free quantitation, SILAC, iTRAQ, SRM, SWATH…
 .
 It provides built-in algorithms for de-novo identification and
 database search, as well as adapters to other state-of-the art tools
 like X!Tandem, Mascot, OMSSA…
 .
 OpenMS supports the Proteomics Standard Initiative (PSI) formats for
 MS data and supports easy integration of tools into workflow engines
 like Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept
 and a unified parameter handling.
 .
 This package brings data shared by the different binaries of the
 OpenMS software package (libOpenMS and libOpenMS_GUI libraries and
 the OpenMS Proteomic Pipeline binary tools).

openms-doc: package for LC/MS data management and analysis - documentation

 OpenMS is a package for LC/MS data management and analysis. OpenMS
 offers an infrastructure for the development of mass
 spectrometry-related software and powerful 2D and 3D visualization
 solutions.
 .
 OpenMS offers analyses for various quantitation protocols, including
 label-free quantitation, SILAC, iTRAQ, SRM, SWATH…
 .
 It provides built-in algorithms for de-novo identification and
 database search, as well as adapters to other state-of-the art tools
 like X!Tandem, Mascot, OMSSA…
 .
 OpenMS supports the Proteomics Standard Initiative (PSI) formats for
 MS data and supports easy integration of tools into workflow engines
 like Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept
 and a unified parameter handling.
 .
 This package brings full documentation for both the libopenms library
 package (libOpenMS and libOpenMS_GUI) and the OpenMS Proteomic
 Pipeline (topp) package.

topp: set of programs implementing The OpenMS Proteomic Pipeline

 TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis
 of HPLC/MS data. It consists of a set of numerous small applications
 that can be chained together to create analysis pipelines tailored
 for a specific problem. The applications make use of the libopenms
 library. Some examples of these applications are :
 .
   - TOPPView: A viewer for mass spectrometry data.
   - TOPPAS: An assistant for GUI-driven TOPP workflow design.
   - DTAExtractor: Extracts spectra of an MS run file to several
     files in DTA format.
   - FileConverter: Converts between different MS file formats.
   - FileFilter: Extracts or manipulates portions of data from peak,
     feature or consensus feature files.
   - SpectraMerger: Merges spectra from an LC/MS map, either by
     precursor or by RT blocks.
   - BaselineFilter: Removes the baseline from profile spectra using a
     top-hat filter.
   - InternalCalibration: Applies an internal calibration.
   - PTModel: Trains a model for the prediction of proteotypic
     peptides from a training set.
   - RTPredict: Predicts retention times for peptides using a model
     trained by RTModel.
   - ExecutePipeline: Executes workflows created by TOPPAS.