/usr/lib/libmpi_f77.so.1: undefined symbol: opal_uses_threads

Bug #1398017 reported by Rongcui Dong
6
This bug affects 1 person
Affects Status Importance Assigned to Milestone
openmpi (Ubuntu)
New
Undecided
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Bug Description

I was trying to use FeniCS actually. As I type the following in python console, or run the demo programs(either C++ or Python), I get this error:

Python 2.7.6 (default, Mar 22 2014, 22:59:56)
[GCC 4.8.2] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import fenics
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/usr/lib/python2.7/dist-packages/fenics/__init__.py", line 6, in <module>
    from dolfin import *
  File "/usr/lib/python2.7/dist-packages/dolfin/__init__.py", line 16, in <module>
    import cpp
  File "/usr/lib/python2.7/dist-packages/dolfin/cpp/__init__.py", line 42, in <module>
    exec("import %s" % module_name)
  File "<string>", line 1, in <module>
  File "/usr/lib/python2.7/dist-packages/dolfin/cpp/common.py", line 32, in <module>
    _common = swig_import_helper()
  File "/usr/lib/python2.7/dist-packages/dolfin/cpp/common.py", line 28, in swig_import_helper
    _mod = imp.load_module('_common', fp, pathname, description)
ImportError: /usr/lib/libmpi_f77.so.1: undefined symbol: opal_uses_threads

The last 'undefined symbols' are always there. However, openmpi seems to be compiled with threads:

$ ompi_info -c | grep -i thread
          Thread support: posix (MPI_THREAD_MULTIPLE: no, OPAL support: yes, OMPI progress: no, ORTE progress: yes, Event lib: yes)
            Build CFLAGS: -O3 -DNDEBUG -finline-functions -fno-strict-aliasing -pthread
          Build CXXFLAGS: -O3 -DNDEBUG -finline-functions -pthread
    Wrapper extra CFLAGS: -pthread
  Wrapper extra CXXFLAGS: -pthread
   Wrapper extra FCFLAGS: -pthread
   FT Checkpoint support: no (checkpoint thread: no)

ProblemType: Bug
DistroRelease: Ubuntu 14.04
Package: libopenmpi1.6 1.6.5-8
ProcVersionSignature: Ubuntu 3.13.0-40.69-generic 3.13.11.10
Uname: Linux 3.13.0-40-generic x86_64
ApportVersion: 2.14.1-0ubuntu3.5
Architecture: amd64
CurrentDesktop: Unity
Date: Mon Dec 1 09:26:24 2014
InstallationDate: Installed on 2014-10-28 (33 days ago)
InstallationMedia: Ubuntu 14.04.1 LTS "Trusty Tahr" - Release amd64 (20140722.2)
SourcePackage: openmpi
UpgradeStatus: No upgrade log present (probably fresh install)

Revision history for this message
Rongcui Dong (carldong76) wrote :
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