Ubuntu
ncbi-vdb package

ncbi-vdb 2.11.2+dfsg-4build2 source package in Ubuntu

Changelog

ncbi-vdb (2.11.2+dfsg-4build2) jammy; urgency=medium

  * No change rebuild

 -- Bryce Harrington <email address hidden>  Tue, 29 Mar 2022 23:19:22 +0000

Upload details

Uploaded by:
Bryce Harrington
Uploaded to:
Jammy
Original maintainer:
Ubuntu Developers
Architectures:
amd64 arm64 i386 x32
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Jammy release universe misc

Builds

Jammy: [FULLYBUILT] amd64 [FULLYBUILT] arm64

Downloads

File Size SHA-256 Checksum
ncbi-vdb_2.11.2+dfsg.orig.tar.xz 18.6 MiB 5b0dc693fe237f35c421f91bdbf04d718e9f1121ced2f7830d001b34cdaff15b
ncbi-vdb_2.11.2+dfsg-4build2.debian.tar.xz 21.8 KiB f78ce6d3cdc7ae8185ce210584726d6c6d2993677808451a4f4dbfe303174dc0
ncbi-vdb_2.11.2+dfsg-4build2.dsc 2.8 KiB 56bd8deecf3c46e9d87d80c5af39670e7ef75eeaab0848787760e0bb0124620e

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Binary packages built by this source

libkdf5-2: No summary available for libkdf5-2 in ubuntu lunar.

No description available for libkdf5-2 in ubuntu lunar.

libkdf5-2-dbgsym: No summary available for libkdf5-2-dbgsym in ubuntu kinetic.

No description available for libkdf5-2-dbgsym in ubuntu kinetic.

libkdf5-dev: No summary available for libkdf5-dev in ubuntu lunar.

No description available for libkdf5-dev in ubuntu lunar.

libncbi-vdb-dev: libraries for using data in the INSDC Sequence Read Archives (devel)

 Much of the data submitted these days, for example in BAM, Illumina
 export.txt, and Complete Genomics formats, contain alignment
 information. With aligned data, NCBI uses Compression by Reference,
 which only stores the differences in base pairs between sequence data
 and the segment it aligns to. The process to restore original data, for
 example as FastQ, requires fast access to the reference sequences that
 the original data was aligned to. NCBI recommends that SRA users
 dedicate local disk space to store references downloaded from the NCBI
 SRA site. As of Fall 2014, the complete collection of these reference
 sequences is 66 GB. While it isn't usually necessary to download the
 entirety of the reference sequences, this should give you an idea of the
 scale of the storage requirement. By default, the Toolkit will download
 missing reference sequences on demand and cache them in the user's home
 directory. The location of this cache is configurable, as is whether the
 download is automatic or manual.
 .
 This is the development package.

libncbi-vdb2: libraries for using data in the INSDC Sequence Read Archives

 NGS is a new, domain-specific API for accessing reads, alignments and
 pileups produced from Next Generation Sequencing. The API itself is
 independent from any particular back-end implementation, and supports
 use of multiple back-ends simultaneously. It also provides a library for
 building new back-end "engines". The engine for accessing SRA data is
 contained within the sister repository ncbi-vdb.
 .
 The API is currently expressed in C++, Java and Python languages. The
 design makes it possible to maintain a high degree of similarity between
 the code in one language and code in another - especially between C++
 and Java.

libncbi-vdb2-dbgsym: debug symbols for libncbi-vdb2
libncbi-wvdb-dev: No summary available for libncbi-wvdb-dev in ubuntu kinetic.

No description available for libncbi-wvdb-dev in ubuntu kinetic.

libncbi-wvdb2: virtual layer update modul of ncbi-vdb library

 NGS is a new, domain-specific API for accessing reads, alignments and
 pileups produced from Next Generation Sequencing. The API itself is
 independent from any particular back-end implementation, and supports
 use of multiple back-ends simultaneously. It also provides a library for
 building new back-end "engines". The engine for accessing SRA data is
 contained within the sister repository ncbi-vdb.
 .
 This library is part of the ncbi-vdb package.

libncbi-wvdb2-dbgsym: No summary available for libncbi-wvdb2-dbgsym in ubuntu kinetic.

No description available for libncbi-wvdb2-dbgsym in ubuntu kinetic.

libvdb-sqlite-dev: sqlite modul of ncbi-vdb library (devel)

 NGS is a new, domain-specific API for accessing reads, alignments and
 pileups produced from Next Generation Sequencing. The API itself is
 independent from any particular back-end implementation, and supports
 use of multiple back-ends simultaneously. It also provides a library for
 building new back-end "engines". The engine for accessing SRA data is
 contained within the sister repository ncbi-vdb.
 .
 This library is part of the ncbi-vdb package and provides a sqlite
 interface.
 .
 This is the development package.

libvdb-sqlite2: No summary available for libvdb-sqlite2 in ubuntu kinetic.

No description available for libvdb-sqlite2 in ubuntu kinetic.

libvdb-sqlite2-dbgsym: No summary available for libvdb-sqlite2-dbgsym in ubuntu lunar.

No description available for libvdb-sqlite2-dbgsym in ubuntu lunar.