ncbi-vdb 2.11.2+dfsg-4build2 source package in Ubuntu
Changelog
ncbi-vdb (2.11.2+dfsg-4build2) jammy; urgency=medium * No change rebuild -- Bryce Harrington <email address hidden> Tue, 29 Mar 2022 23:19:22 +0000
Upload details
- Uploaded by:
- Bryce Harrington
- Uploaded to:
- Jammy
- Original maintainer:
- Ubuntu Developers
- Architectures:
- amd64 arm64 i386 x32
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section | |
---|---|---|---|---|
Jammy | release | universe | misc |
Downloads
File | Size | SHA-256 Checksum |
---|---|---|
ncbi-vdb_2.11.2+dfsg.orig.tar.xz | 18.6 MiB | 5b0dc693fe237f35c421f91bdbf04d718e9f1121ced2f7830d001b34cdaff15b |
ncbi-vdb_2.11.2+dfsg-4build2.debian.tar.xz | 21.8 KiB | f78ce6d3cdc7ae8185ce210584726d6c6d2993677808451a4f4dbfe303174dc0 |
ncbi-vdb_2.11.2+dfsg-4build2.dsc | 2.8 KiB | 56bd8deecf3c46e9d87d80c5af39670e7ef75eeaab0848787760e0bb0124620e |
Available diffs
Binary packages built by this source
- libkdf5-2: No summary available for libkdf5-2 in ubuntu lunar.
No description available for libkdf5-2 in ubuntu lunar.
- libkdf5-2-dbgsym: No summary available for libkdf5-2-dbgsym in ubuntu kinetic.
No description available for libkdf5-2-dbgsym in ubuntu kinetic.
- libkdf5-dev: No summary available for libkdf5-dev in ubuntu lunar.
No description available for libkdf5-dev in ubuntu lunar.
- libncbi-vdb-dev: libraries for using data in the INSDC Sequence Read Archives (devel)
Much of the data submitted these days, for example in BAM, Illumina
export.txt, and Complete Genomics formats, contain alignment
information. With aligned data, NCBI uses Compression by Reference,
which only stores the differences in base pairs between sequence data
and the segment it aligns to. The process to restore original data, for
example as FastQ, requires fast access to the reference sequences that
the original data was aligned to. NCBI recommends that SRA users
dedicate local disk space to store references downloaded from the NCBI
SRA site. As of Fall 2014, the complete collection of these reference
sequences is 66 GB. While it isn't usually necessary to download the
entirety of the reference sequences, this should give you an idea of the
scale of the storage requirement. By default, the Toolkit will download
missing reference sequences on demand and cache them in the user's home
directory. The location of this cache is configurable, as is whether the
download is automatic or manual.
.
This is the development package.
- libncbi-vdb2: libraries for using data in the INSDC Sequence Read Archives
NGS is a new, domain-specific API for accessing reads, alignments and
pileups produced from Next Generation Sequencing. The API itself is
independent from any particular back-end implementation, and supports
use of multiple back-ends simultaneously. It also provides a library for
building new back-end "engines". The engine for accessing SRA data is
contained within the sister repository ncbi-vdb.
.
The API is currently expressed in C++, Java and Python languages. The
design makes it possible to maintain a high degree of similarity between
the code in one language and code in another - especially between C++
and Java.
- libncbi-vdb2-dbgsym: debug symbols for libncbi-vdb2
- libncbi-wvdb-dev: No summary available for libncbi-wvdb-dev in ubuntu kinetic.
No description available for libncbi-wvdb-dev in ubuntu kinetic.
- libncbi-wvdb2: virtual layer update modul of ncbi-vdb library
NGS is a new, domain-specific API for accessing reads, alignments and
pileups produced from Next Generation Sequencing. The API itself is
independent from any particular back-end implementation, and supports
use of multiple back-ends simultaneously. It also provides a library for
building new back-end "engines". The engine for accessing SRA data is
contained within the sister repository ncbi-vdb.
.
This library is part of the ncbi-vdb package.
- libncbi-wvdb2-dbgsym: No summary available for libncbi-wvdb2-dbgsym in ubuntu kinetic.
No description available for libncbi-
wvdb2-dbgsym in ubuntu kinetic.
- libvdb-sqlite-dev: sqlite modul of ncbi-vdb library (devel)
NGS is a new, domain-specific API for accessing reads, alignments and
pileups produced from Next Generation Sequencing. The API itself is
independent from any particular back-end implementation, and supports
use of multiple back-ends simultaneously. It also provides a library for
building new back-end "engines". The engine for accessing SRA data is
contained within the sister repository ncbi-vdb.
.
This library is part of the ncbi-vdb package and provides a sqlite
interface.
.
This is the development package.
- libvdb-sqlite2: No summary available for libvdb-sqlite2 in ubuntu kinetic.
No description available for libvdb-sqlite2 in ubuntu kinetic.
- libvdb-sqlite2-dbgsym: No summary available for libvdb-sqlite2-dbgsym in ubuntu lunar.
No description available for libvdb-
sqlite2- dbgsym in ubuntu lunar.