ncbi-vdb 2.11.2+dfsg-4build1 source package in Ubuntu
Changelog
ncbi-vdb (2.11.2+dfsg-4build1) jammy; urgency=medium * No-change rebuild against libmbedcrypto7 -- Steve Langasek <email address hidden> Fri, 18 Feb 2022 23:45:38 +0000
Upload details
- Uploaded by:
- Steve Langasek
- Uploaded to:
- Jammy
- Original maintainer:
- Ubuntu Developers
- Architectures:
- amd64 arm64 i386 x32
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section |
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Downloads
File | Size | SHA-256 Checksum |
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ncbi-vdb_2.11.2+dfsg.orig.tar.xz | 18.6 MiB | 5b0dc693fe237f35c421f91bdbf04d718e9f1121ced2f7830d001b34cdaff15b |
ncbi-vdb_2.11.2+dfsg-4build1.debian.tar.xz | 21.8 KiB | 0b0a0974a34eaa6a08866f4928779425558f0add628dea3d7dff32bb9092fd4c |
ncbi-vdb_2.11.2+dfsg-4build1.dsc | 2.8 KiB | bede55d8f9c9528c34b9949530d5ed7aabcf907aa9906ca599db99556dfb39b4 |
Available diffs
Binary packages built by this source
- libkdf5-2: hdf5 access to data in the INSDC Sequence Read Archives
NGS is a new, domain-specific API for accessing reads, alignments and
pileups produced from Next Generation Sequencing. The API itself is
independent from any particular back-end implementation, and supports
use of multiple back-ends simultaneously. It also provides a library for
building new back-end "engines". The engine for accessing SRA data is
contained within the sister repository ncbi-vdb.
.
This library is part of the ncbi-vdb package and provides an interface
to the Hierarchical Data Format 5 (HDF5).
- libkdf5-2-dbgsym: debug symbols for libkdf5-2
- libkdf5-dev: hdf5 access to data in the INSDC Sequence Read Archives (devel)
NGS is a new, domain-specific API for accessing reads, alignments and
pileups produced from Next Generation Sequencing. The API itself is
independent from any particular back-end implementation, and supports
use of multiple back-ends simultaneously. It also provides a library for
building new back-end "engines". The engine for accessing SRA data is
contained within the sister repository ncbi-vdb.
.
This library is part of the ncbi-vdb package and provides an interface
to the Hierarchical Data Format 5 (HDF5).
.
This is the development package.
- libncbi-vdb-dev: libraries for using data in the INSDC Sequence Read Archives (devel)
Much of the data submitted these days, for example in BAM, Illumina
export.txt, and Complete Genomics formats, contain alignment
information. With aligned data, NCBI uses Compression by Reference,
which only stores the differences in base pairs between sequence data
and the segment it aligns to. The process to restore original data, for
example as FastQ, requires fast access to the reference sequences that
the original data was aligned to. NCBI recommends that SRA users
dedicate local disk space to store references downloaded from the NCBI
SRA site. As of Fall 2014, the complete collection of these reference
sequences is 66 GB. While it isn't usually necessary to download the
entirety of the reference sequences, this should give you an idea of the
scale of the storage requirement. By default, the Toolkit will download
missing reference sequences on demand and cache them in the user's home
directory. The location of this cache is configurable, as is whether the
download is automatic or manual.
.
This is the development package.
- libncbi-vdb2: libraries for using data in the INSDC Sequence Read Archives
NGS is a new, domain-specific API for accessing reads, alignments and
pileups produced from Next Generation Sequencing. The API itself is
independent from any particular back-end implementation, and supports
use of multiple back-ends simultaneously. It also provides a library for
building new back-end "engines". The engine for accessing SRA data is
contained within the sister repository ncbi-vdb.
.
The API is currently expressed in C++, Java and Python languages. The
design makes it possible to maintain a high degree of similarity between
the code in one language and code in another - especially between C++
and Java.
- libncbi-vdb2-dbgsym: debug symbols for libncbi-vdb2
- libncbi-wvdb-dev: virtual layer update modul of ncbi-vdb library (devel)
NGS is a new, domain-specific API for accessing reads, alignments and
pileups produced from Next Generation Sequencing. The API itself is
independent from any particular back-end implementation, and supports
use of multiple back-ends simultaneously. It also provides a library for
building new back-end "engines". The engine for accessing SRA data is
contained within the sister repository ncbi-vdb.
.
This library is part of the ncbi-vdb package.
.
This is the development package.
- libncbi-wvdb2: virtual layer update modul of ncbi-vdb library
NGS is a new, domain-specific API for accessing reads, alignments and
pileups produced from Next Generation Sequencing. The API itself is
independent from any particular back-end implementation, and supports
use of multiple back-ends simultaneously. It also provides a library for
building new back-end "engines". The engine for accessing SRA data is
contained within the sister repository ncbi-vdb.
.
This library is part of the ncbi-vdb package.
- libncbi-wvdb2-dbgsym: debug symbols for libncbi-wvdb2
- libvdb-sqlite-dev: sqlite modul of ncbi-vdb library (devel)
NGS is a new, domain-specific API for accessing reads, alignments and
pileups produced from Next Generation Sequencing. The API itself is
independent from any particular back-end implementation, and supports
use of multiple back-ends simultaneously. It also provides a library for
building new back-end "engines". The engine for accessing SRA data is
contained within the sister repository ncbi-vdb.
.
This library is part of the ncbi-vdb package and provides a sqlite
interface.
.
This is the development package.
- libvdb-sqlite2: sqlite modul of ncbi-vdb library
NGS is a new, domain-specific API for accessing reads, alignments and
pileups produced from Next Generation Sequencing. The API itself is
independent from any particular back-end implementation, and supports
use of multiple back-ends simultaneously. It also provides a library for
building new back-end "engines". The engine for accessing SRA data is
contained within the sister repository ncbi-vdb.
.
This library is part of the ncbi-vdb package and provides a sqlite
interface.
- libvdb-sqlite2-dbgsym: debug symbols for libvdb-sqlite2