RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: 2.6.24-29-server #1 SMP Tue Oct 11 15:33:51 UTC 2011 i686 Buildd toolchain package versions: launchpad-buildd_110~0.IS.08.04 python-lpbuildd_110~0.IS.08.04 bzr_2.4.0-0ubuntu2~11.IS.8.04. Syncing the system clock with the buildd NTP service... 10 Feb 23:26:31 ntpdate[2806]: adjust time server 10.211.37.1 offset 0.000055 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '90967f6355fab39bafd4890b30e09e877b48357d', '/home/buildd/filecache-default/dcfb20b014e632cba36d6407b45db953a8964aaa'] Unpacking chroot for build 90967f6355fab39bafd4890b30e09e877b48357d RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '90967f6355fab39bafd4890b30e09e877b48357d'] Mounting chroot for build 90967f6355fab39bafd4890b30e09e877b48357d RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '90967f6355fab39bafd4890b30e09e877b48357d', 'deb http://ftpmaster.internal/ubuntu precise main universe'] Overriding sources.list in build-90967f6355fab39bafd4890b30e09e877b48357d RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '90967f6355fab39bafd4890b30e09e877b48357d', 'i386'] Updating debian chroot for build 90967f6355fab39bafd4890b30e09e877b48357d Ign http://ftpmaster.internal precise InRelease Get:1 http://ftpmaster.internal precise Release.gpg [198 B] Get:2 http://ftpmaster.internal precise Release [49.6 kB] Get:3 http://ftpmaster.internal precise/main i386 Packages [1290 kB] Get:4 http://ftpmaster.internal precise/universe i386 Packages [4781 kB] Get:5 http://ftpmaster.internal precise/main TranslationIndex [3570 B] Get:6 http://ftpmaster.internal precise/universe TranslationIndex [2784 B] Get:7 http://ftpmaster.internal precise/main Translation-en [722 kB] Get:8 http://ftpmaster.internal precise/universe Translation-en [3349 kB] Fetched 10.2 MB in 7s (1440 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: ca-certificates gzip libc-bin libc-dev-bin libc6 libc6-dev libglib2.0-0 libnih-dbus1 libnih1 libpam-modules libpam-modules-bin libpam-runtime libpam0g libudev0 linux-libc-dev login multiarch-support passwd udev upstart 20 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 14.9 MB of archives. After this operation, 300 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! gzip login libnih-dbus1 libc-bin upstart libc6-dev libc-dev-bin libc6 libnih1 libudev0 linux-libc-dev libpam0g libpam-modules-bin libpam-modules libglib2.0-0 libpam-runtime multiarch-support passwd udev ca-certificates Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main gzip i386 1.4-1ubuntu2 [87.7 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main login i386 1:4.1.4.2+svn3283-3ubuntu4 [288 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main libnih-dbus1 i386 1.0.3-4ubuntu8 [15.2 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main libc-bin i386 2.15-0ubuntu2 [1125 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main upstart i386 1.4-0ubuntu6 [298 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libc6-dev i386 2.15-0ubuntu2 [5068 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main libc-dev-bin i386 2.15-0ubuntu2 [77.7 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main libc6 i386 2.15-0ubuntu2 [3931 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main libnih1 i386 1.0.3-4ubuntu8 [53.3 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main libudev0 i386 175-0ubuntu4 [33.6 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main linux-libc-dev i386 3.2.0-15.24 [824 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main libpam0g i386 1.1.3-7ubuntu2 [61.5 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main libpam-modules-bin i386 1.1.3-7ubuntu2 [31.6 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main libpam-modules i386 1.1.3-7ubuntu2 [269 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main libglib2.0-0 i386 2.31.16-0ubuntu1 [1198 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main libpam-runtime all 1.1.3-7ubuntu2 [40.4 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main multiarch-support i386 2.15-0ubuntu2 [4486 B] Get:18 http://ftpmaster.internal/ubuntu/ precise/main passwd i386 1:4.1.4.2+svn3283-3ubuntu4 [936 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise/main udev i386 175-0ubuntu4 [348 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main ca-certificates all 20111211 [169 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.9 MB in 1s (14.3 MB/s) (Reading database ... 14372 files and directories currently installed.) Preparing to replace gzip 1.4-1ubuntu1 (using .../gzip_1.4-1ubuntu2_i386.deb) ... Unpacking replacement gzip ... Setting up gzip (1.4-1ubuntu2) ... (Reading database ... 14372 files and directories currently installed.) Preparing to replace login 1:4.1.4.2+svn3283-3ubuntu3 (using .../login_1%3a4.1.4.2+svn3283-3ubuntu4_i386.deb) ... Unpacking replacement login ... Setting up login (1:4.1.4.2+svn3283-3ubuntu4) ... Installing new version of config file /etc/securetty ... (Reading database ... 14372 files and directories currently installed.) Preparing to replace libnih-dbus1 1.0.3-4ubuntu5 (using .../libnih-dbus1_1.0.3-4ubuntu8_i386.deb) ... Unpacking replacement libnih-dbus1 ... Preparing to replace libc-bin 2.13-24ubuntu4 (using .../libc-bin_2.15-0ubuntu2_i386.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.15-0ubuntu2) ... (Reading database ... 14373 files and directories currently installed.) Preparing to replace upstart 1.4-0ubuntu5 (using .../upstart_1.4-0ubuntu6_i386.deb) ... Unpacking replacement upstart ... Preparing to replace libc6-dev 2.13-24ubuntu4 (using .../libc6-dev_2.15-0ubuntu2_i386.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-dev-bin 2.13-24ubuntu4 (using .../libc-dev-bin_2.15-0ubuntu2_i386.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libc6 2.13-24ubuntu4 (using .../libc6_2.15-0ubuntu2_i386.deb) ... Checking for services that may need to be restarted... Checking init scripts... Unpacking replacement libc6 ... Setting up libc6 (2.15-0ubuntu2) ... Checking for services that may need to be restarted... Checking init scripts... Nothing to restart. Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14387 files and directories currently installed.) Preparing to replace libnih1 1.0.3-4ubuntu5 (using .../libnih1_1.0.3-4ubuntu8_i386.deb) ... Unpacking replacement libnih1 ... Preparing to replace libudev0 175-0ubuntu3 (using .../libudev0_175-0ubuntu4_i386.deb) ... Unpacking replacement libudev0 ... Preparing to replace linux-libc-dev 3.2.0-12.21 (using .../linux-libc-dev_3.2.0-15.24_i386.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace libpam0g 1.1.3-7ubuntu1 (using .../libpam0g_1.1.3-7ubuntu2_i386.deb) ... Unpacking replacement libpam0g ... Setting up libpam0g (1.1.3-7ubuntu2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14387 files and directories currently installed.) Preparing to replace libpam-modules-bin 1.1.3-7ubuntu1 (using .../libpam-modules-bin_1.1.3-7ubuntu2_i386.deb) ... Unpacking replacement libpam-modules-bin ... Setting up libpam-modules-bin (1.1.3-7ubuntu2) ... (Reading database ... 14387 files and directories currently installed.) Preparing to replace libpam-modules 1.1.3-7ubuntu1 (using .../libpam-modules_1.1.3-7ubuntu2_i386.deb) ... Unpacking replacement libpam-modules ... Setting up libpam-modules (1.1.3-7ubuntu2) ... (Reading database ... 14387 files and directories currently installed.) Preparing to replace libglib2.0-0 2.31.14-0ubuntu1 (using .../libglib2.0-0_2.31.16-0ubuntu1_i386.deb) ... Unpacking replacement libglib2.0-0 ... Preparing to replace libpam-runtime 1.1.3-7ubuntu1 (using .../libpam-runtime_1.1.3-7ubuntu2_all.deb) ... Unpacking replacement libpam-runtime ... Setting up libpam-runtime (1.1.3-7ubuntu2) ... (Reading database ... 14387 files and directories currently installed.) Preparing to replace multiarch-support 2.13-24ubuntu4 (using .../multiarch-support_2.15-0ubuntu2_i386.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.15-0ubuntu2) ... (Reading database ... 14387 files and directories currently installed.) Preparing to replace passwd 1:4.1.4.2+svn3283-3ubuntu3 (using .../passwd_1%3a4.1.4.2+svn3283-3ubuntu4_i386.deb) ... Unpacking replacement passwd ... Setting up passwd (1:4.1.4.2+svn3283-3ubuntu4) ... (Reading database ... 14387 files and directories currently installed.) Preparing to replace udev 175-0ubuntu3 (using .../udev_175-0ubuntu4_i386.deb) ... Adding 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace ca-certificates 20110502+nmu1ubuntu5 (using .../ca-certificates_20111211_all.deb) ... Unpacking replacement ca-certificates ... Setting up libnih1 (1.0.3-4ubuntu8) ... Setting up libnih-dbus1 (1.0.3-4ubuntu8) ... Setting up libudev0 (175-0ubuntu4) ... Setting up upstart (1.4-0ubuntu6) ... Installing new version of config file /etc/init/tty1.conf ... Installing new version of config file /etc/init/tty2.conf ... Installing new version of config file /etc/init/tty3.conf ... Installing new version of config file /etc/init/tty4.conf ... Installing new version of config file /etc/init/tty5.conf ... Installing new version of config file /etc/init/tty6.conf ... Setting up libc-dev-bin (2.15-0ubuntu2) ... Setting up linux-libc-dev (3.2.0-15.24) ... Setting up libc6-dev (2.15-0ubuntu2) ... Setting up libglib2.0-0 (2.31.16-0ubuntu1) ... No schema files found: doing nothing. Setting up udev (175-0ubuntu4) ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up ca-certificates (20111211) ... Clearing symlinks in /etc/ssl/certs...done. Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '90967f6355fab39bafd4890b30e09e877b48357d', 'i386', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '-A', '--purpose=PRIMARY', '--architecture=i386', '--comp=universe', 'ncbi-tools6_6.1.20110713-3ubuntu2.dsc'] Initiating build 90967f6355fab39bafd4890b30e09e877b48357d with 2 processor cores. Automatic build of ncbi-tools6_6.1.20110713-3ubuntu2 on zirconium by sbuild/i386 1.170.5 Build started at 20120210-2326 ****************************************************************************** ncbi-tools6_6.1.20110713-3ubuntu2.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: csh | c-shell, debhelper (>= 8.1.3~), lesstif2-dev, libglu1-mesa-dev | libglu-dev, libpcre3-dev, libpng12-dev | libpng-dev, libxmu-dev Build-Depends-Indep: icoutils, imagemagick Checking for already installed source dependencies... csh: missing c-shell: missing debhelper: missing lesstif2-dev: missing libglu1-mesa-dev: missing libglu-dev: missing libpcre3-dev: missing libpng12-dev: missing libpng-dev: missing libxmu-dev: missing icoutils: missing imagemagick: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install csh debhelper lesstif2-dev libglu1-mesa-dev libpcre3-dev libpng12-dev libxmu-dev icoutils imagemagick Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils file fontconfig-config gettext gettext-base groff-base html2text imagemagick-common intltool-debian lesstif2 libbsd0 libcroco3 libdrm-dev libencode-locale-perl libexpat1 libexpat1-dev libfile-listing-perl libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgettextpo0 libgl1-mesa-dev libgl1-mesa-glx libglapi-mesa libglu1-mesa libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice-dev libice6 libio-socket-ssl-perl libjasper1 libjpeg-turbo8 libjpeg8 libkms1 liblcms1 liblqr-1-0 libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmagickcore4 libmagickwand4 libnet-http-perl libnet-ssleay-perl libpcrecpp0 libpipeline1 libpopt0 libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libtiff4 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-glx0 libxcb1 libxcb1-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxft-dev libxft2 libxml2 libxmu-headers libxmu6 libxp-dev libxp6 libxrender-dev libxrender1 libxt-dev libxt6 libxxf86vm1 man-db mesa-common-dev pkg-config po-debconf ttf-dejavu-core ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-print-dev x11proto-render-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff libterm-readline-gnu-perl libterm-readline-perl-perl imagemagick-doc autotrace cups-bsd lpr lprng enscript ffmpeg gimp gnuplot grads hp2xx html2ps libwmf-bin mplayer povray radiance sane-utils texlive-base-bin transfig xdg-utils ufraw-batch libdata-dump-perl libjasper-runtime liblcms-utils libcrypt-ssleay-perl libauthen-ntlm-perl libxcb-doc less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur libmagickcore4-extra ghostscript netpbm libgl1-mesa-dri libio-socket-inet6-perl gsfonts libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libmailtools-perl libx11-doc xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils csh debhelper file fontconfig-config gettext gettext-base groff-base html2text icoutils imagemagick imagemagick-common intltool-debian lesstif2 lesstif2-dev libbsd0 libcroco3 libdrm-dev libencode-locale-perl libexpat1 libexpat1-dev libfile-listing-perl libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgettextpo0 libgl1-mesa-dev libgl1-mesa-glx libglapi-mesa libglu1-mesa libglu1-mesa-dev libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice-dev libice6 libio-socket-ssl-perl libjasper1 libjpeg-turbo8 libjpeg8 libkms1 liblcms1 liblqr-1-0 libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmagickcore4 libmagickwand4 libnet-http-perl libnet-ssleay-perl libpcre3-dev libpcrecpp0 libpipeline1 libpng12-dev libpopt0 libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libtiff4 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-glx0 libxcb1 libxcb1-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxft-dev libxft2 libxml2 libxmu-dev libxmu-headers libxmu6 libxp-dev libxp6 libxrender-dev libxrender1 libxt-dev libxt6 libxxf86vm1 man-db mesa-common-dev pkg-config po-debconf ttf-dejavu-core ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-print-dev x11proto-render-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 114 newly installed, 0 to remove and 0 not upgraded. Need to get 21.5 MB of archives. After this operation, 69.9 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libpopt0 libpipeline1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxext6 libxml2 libcroco3 libfreetype6 ucf ttf-dejavu-core fontconfig-config libfontconfig1 libunistring0 libgettextpo0 libglapi-mesa libx11-xcb1 libxcb-glx0 libxdamage1 libxfixes3 libxxf86vm1 libgl1-mesa-glx x11-common libice6 libjpeg-turbo8 libjpeg8 libjasper1 libkms1 liblcms1 libltdl7 libpcrecpp0 libsm6 libtiff4 libxrender1 libxft2 libxt6 libxmu6 libxp6 libglu1-mesa libmagic1 file bsdmainutils gettext-base groff-base libbsd0 man-db csh html2text gettext intltool-debian po-debconf debhelper libencode-locale-perl libhttp-date-perl libfile-listing-perl liburi-perl libhtml-tagset-perl libhtml-parser-perl libhtml-tree-perl liblwp-mediatypes-perl libhttp-message-perl libhttp-cookies-perl libhttp-negotiate-perl libnet-http-perl libnet-ssleay-perl libio-socket-ssl-perl liblwp-protocol-https-perl libwww-robotrules-perl libwww-perl icoutils liblqr-1-0 imagemagick-common libmagickcore4 libmagickwand4 imagemagick lesstif2 xorg-sgml-doctools x11proto-core-dev libice-dev libsm-dev libxau-dev libxdmcp-dev x11proto-input-dev x11proto-kb-dev xtrans-dev libpthread-stubs0 libpthread-stubs0-dev libxcb1-dev libx11-dev x11proto-xext-dev libxext-dev x11proto-print-dev libxp-dev libxt-dev x11proto-render-dev libxrender-dev libexpat1-dev zlib1g-dev libfreetype6-dev pkg-config libfontconfig1-dev libxft-dev lesstif2-dev libdrm-dev mesa-common-dev libgl1-mesa-dev libglu1-mesa-dev libpcre3-dev libpng12-dev libxmu-headers libxmu-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main libexpat1 i386 2.0.1-7.2 [130 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main libpopt0 i386 1.16-3ubuntu1 [29.0 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 i386 1.2.0-5 [25.7 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main libxau6 i386 1:1.0.6-4 [8344 B] Get:5 http://ftpmaster.internal/ubuntu/ precise/main libxdmcp6 i386 1:1.1.0-4 [13.0 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libxcb1 i386 1.8-2 [48.3 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main libx11-data all 2:1.4.99.1-0ubuntu1 [167 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main libx11-6 i386 2:1.4.99.1-0ubuntu1 [771 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main libxext6 i386 2:1.3.0-3 [34.8 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main libxml2 i386 2.7.8.dfsg-5.1ubuntu3 [661 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 i386 0.6.4-1 [97.2 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main libfreetype6 i386 2.4.8-1 [344 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main ucf all 3.0025+nmu2ubuntu1 [54.4 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main ttf-dejavu-core all 2.33-2 [1550 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main fontconfig-config all 2.8.0-3ubuntu3 [44.1 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main libfontconfig1 i386 2.8.0-3ubuntu3 [125 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 i386 0.9.3-5 [432 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 i386 0.18.1.1-5ubuntu3 [118 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise/main libglapi-mesa i386 8.0~rc2-0ubuntu5 [31.3 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main libx11-xcb1 i386 2:1.4.99.1-0ubuntu1 [10.2 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main libxcb-glx0 i386 1.8-2 [28.3 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main libxdamage1 i386 1:1.1.3-2 [7368 B] Get:23 http://ftpmaster.internal/ubuntu/ precise/main libxfixes3 i386 1:5.0-4ubuntu1 [12.7 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise/main libxxf86vm1 i386 1:1.1.1-2 [11.9 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise/main libgl1-mesa-glx i386 8.0~rc2-0ubuntu5 [137 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise/main x11-common all 1:7.6+10ubuntu1 [56.9 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise/main libice6 i386 2:1.0.7-2 [44.8 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise/main libjpeg-turbo8 i386 1.1.90+svn733-0ubuntu4 [117 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise/main libjpeg8 i386 8c-2ubuntu6 [1948 B] Get:30 http://ftpmaster.internal/ubuntu/ precise/main libjasper1 i386 1.900.1-13 [153 kB] Get:31 http://ftpmaster.internal/ubuntu/ precise/main libkms1 i386 2.4.30-1ubuntu1 [9646 B] Get:32 http://ftpmaster.internal/ubuntu/ precise/main liblcms1 i386 1.19.dfsg-1ubuntu3 [109 kB] Get:33 http://ftpmaster.internal/ubuntu/ precise/main libltdl7 i386 2.4.2-1ubuntu1 [38.1 kB] Get:34 http://ftpmaster.internal/ubuntu/ precise/main libpcrecpp0 i386 8.12-4 [16.6 kB] Get:35 http://ftpmaster.internal/ubuntu/ precise/main libsm6 i386 2:1.2.0-2 [17.6 kB] Get:36 http://ftpmaster.internal/ubuntu/ precise/main libtiff4 i386 3.9.5-2 [142 kB] Get:37 http://ftpmaster.internal/ubuntu/ precise/main libxrender1 i386 1:0.9.6-2 [20.4 kB] Get:38 http://ftpmaster.internal/ubuntu/ precise/main libxft2 i386 2.2.0-3ubuntu1 [42.4 kB] Get:39 http://ftpmaster.internal/ubuntu/ precise/main libxt6 i386 1:1.1.1-2 [180 kB] Get:40 http://ftpmaster.internal/ubuntu/ precise/main libxmu6 i386 2:1.1.0-3 [52.4 kB] Get:41 http://ftpmaster.internal/ubuntu/ precise/main libxp6 i386 1:1.0.1-2 [18.0 kB] Get:42 http://ftpmaster.internal/ubuntu/ precise/main libglu1-mesa i386 8.0~rc2-0ubuntu5 [200 kB] Get:43 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 i386 5.09-2 [219 kB] Get:44 http://ftpmaster.internal/ubuntu/ precise/main file i386 5.09-2 [19.4 kB] Get:45 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils i386 8.2.3 [196 kB] Get:46 http://ftpmaster.internal/ubuntu/ precise/main gettext-base i386 0.18.1.1-5ubuntu3 [58.2 kB] Get:47 http://ftpmaster.internal/ubuntu/ precise/main groff-base i386 1.21-6 [1024 kB] Get:48 http://ftpmaster.internal/ubuntu/ precise/main libbsd0 i386 0.3.0-1 [31.7 kB] Get:49 http://ftpmaster.internal/ubuntu/ precise/main man-db i386 2.6.0.2-3 [721 kB] Get:50 http://ftpmaster.internal/ubuntu/ precise/universe csh i386 20110502-2ubuntu1 [238 kB] Get:51 http://ftpmaster.internal/ubuntu/ precise/main html2text i386 1.3.2a-15 [101 kB] Get:52 http://ftpmaster.internal/ubuntu/ precise/main gettext i386 0.18.1.1-5ubuntu3 [1122 kB] Get:53 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:54 http://ftpmaster.internal/ubuntu/ precise/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:55 http://ftpmaster.internal/ubuntu/ precise/main debhelper all 9.20120115ubuntu2 [618 kB] Get:56 http://ftpmaster.internal/ubuntu/ precise/main libencode-locale-perl all 1.02-2 [12.0 kB] Get:57 http://ftpmaster.internal/ubuntu/ precise/main libhttp-date-perl all 6.00-1 [10.1 kB] Get:58 http://ftpmaster.internal/ubuntu/ precise/main libfile-listing-perl all 6.03-1 [9690 B] Get:59 http://ftpmaster.internal/ubuntu/ precise/main liburi-perl all 1.59-1 [90.3 kB] Get:60 http://ftpmaster.internal/ubuntu/ precise/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:61 http://ftpmaster.internal/ubuntu/ precise/main libhtml-parser-perl i386 3.69-1build1 [99.2 kB] Get:62 http://ftpmaster.internal/ubuntu/ precise/main libhtml-tree-perl all 4.2-1 [205 kB] Get:63 http://ftpmaster.internal/ubuntu/ precise/main liblwp-mediatypes-perl all 6.01-1 [17.5 kB] Get:64 http://ftpmaster.internal/ubuntu/ precise/main libhttp-message-perl all 6.01-1 [77.6 kB] Get:65 http://ftpmaster.internal/ubuntu/ precise/main libhttp-cookies-perl all 6.00-2 [23.3 kB] Get:66 http://ftpmaster.internal/ubuntu/ precise/main libhttp-negotiate-perl all 6.00-2 [13.4 kB] Get:67 http://ftpmaster.internal/ubuntu/ precise/main libnet-http-perl all 6.02-1 [23.5 kB] Get:68 http://ftpmaster.internal/ubuntu/ precise/main libnet-ssleay-perl i386 1.42-1build1 [184 kB] Get:69 http://ftpmaster.internal/ubuntu/ precise/main libio-socket-ssl-perl all 1.53-1 [47.5 kB] Get:70 http://ftpmaster.internal/ubuntu/ precise/main liblwp-protocol-https-perl all 6.02-1 [6746 B] Get:71 http://ftpmaster.internal/ubuntu/ precise/main libwww-robotrules-perl all 6.01-1 [14.1 kB] Get:72 http://ftpmaster.internal/ubuntu/ precise/main libwww-perl all 6.03-1 [156 kB] Get:73 http://ftpmaster.internal/ubuntu/ precise/main icoutils i386 0.29.1-2 [67.1 kB] Get:74 http://ftpmaster.internal/ubuntu/ precise/main liblqr-1-0 i386 0.4.1-1.1 [37.8 kB] Get:75 http://ftpmaster.internal/ubuntu/ precise/main imagemagick-common all 8:6.6.9.7-5ubuntu2 [40.2 kB] Get:76 http://ftpmaster.internal/ubuntu/ precise/main libmagickcore4 i386 8:6.6.9.7-5ubuntu2 [1791 kB] Get:77 http://ftpmaster.internal/ubuntu/ precise/main libmagickwand4 i386 8:6.6.9.7-5ubuntu2 [320 kB] Get:78 http://ftpmaster.internal/ubuntu/ precise/main imagemagick i386 8:6.6.9.7-5ubuntu2 [49.3 kB] Get:79 http://ftpmaster.internal/ubuntu/ precise/universe lesstif2 i386 1:0.95.2-1 [649 kB] Get:80 http://ftpmaster.internal/ubuntu/ precise/main xorg-sgml-doctools all 1:1.10-1 [12.0 kB] Get:81 http://ftpmaster.internal/ubuntu/ precise/main x11proto-core-dev all 7.0.22-1 [299 kB] Get:82 http://ftpmaster.internal/ubuntu/ precise/main libice-dev i386 2:1.0.7-2 [128 kB] Get:83 http://ftpmaster.internal/ubuntu/ precise/main libsm-dev i386 2:1.2.0-2 [86.4 kB] Get:84 http://ftpmaster.internal/ubuntu/ precise/main libxau-dev i386 1:1.0.6-4 [10.2 kB] Get:85 http://ftpmaster.internal/ubuntu/ precise/main libxdmcp-dev i386 1:1.1.0-4 [26.5 kB] Get:86 http://ftpmaster.internal/ubuntu/ precise/main x11proto-input-dev all 2.1.99.6-1 [133 kB] Get:87 http://ftpmaster.internal/ubuntu/ precise/main x11proto-kb-dev all 1.0.5-2 [27.6 kB] Get:88 http://ftpmaster.internal/ubuntu/ precise/main xtrans-dev all 1.2.6-2 [82.9 kB] Get:89 http://ftpmaster.internal/ubuntu/ precise/main libpthread-stubs0 i386 0.3-3 [3264 B] Get:90 http://ftpmaster.internal/ubuntu/ precise/main libpthread-stubs0-dev i386 0.3-3 [2860 B] Get:91 http://ftpmaster.internal/ubuntu/ precise/main libxcb1-dev i386 1.8-2 [82.3 kB] Get:92 http://ftpmaster.internal/ubuntu/ precise/main libx11-dev i386 2:1.4.99.1-0ubuntu1 [895 kB] Get:93 http://ftpmaster.internal/ubuntu/ precise/main x11proto-xext-dev all 7.2.0-3 [253 kB] Get:94 http://ftpmaster.internal/ubuntu/ precise/main libxext-dev i386 2:1.3.0-3 [141 kB] Get:95 http://ftpmaster.internal/ubuntu/ precise/main x11proto-print-dev all 1.0.5-2 [10.7 kB] Get:96 http://ftpmaster.internal/ubuntu/ precise/main libxp-dev i386 1:1.0.1-2 [82.5 kB] Get:97 http://ftpmaster.internal/ubuntu/ precise/main libxt-dev i386 1:1.1.1-2 [472 kB] Get:98 http://ftpmaster.internal/ubuntu/ precise/main x11proto-render-dev all 2:0.11.1-2 [20.1 kB] Get:99 http://ftpmaster.internal/ubuntu/ precise/main libxrender-dev i386 1:0.9.6-2 [27.7 kB] Get:100 http://ftpmaster.internal/ubuntu/ precise/main libexpat1-dev i386 2.0.1-7.2 [207 kB] Get:101 http://ftpmaster.internal/ubuntu/ precise/main zlib1g-dev i386 1:1.2.3.4.dfsg-3ubuntu4 [162 kB] Get:102 http://ftpmaster.internal/ubuntu/ precise/main libfreetype6-dev i386 2.4.8-1 [778 kB] Get:103 http://ftpmaster.internal/ubuntu/ precise/main pkg-config i386 0.26-1ubuntu1 [40.3 kB] Get:104 http://ftpmaster.internal/ubuntu/ precise/main libfontconfig1-dev i386 2.8.0-3ubuntu3 [650 kB] Get:105 http://ftpmaster.internal/ubuntu/ precise/main libxft-dev i386 2.2.0-3ubuntu1 [51.7 kB] Get:106 http://ftpmaster.internal/ubuntu/ precise/universe lesstif2-dev i386 1:0.95.2-1 [864 kB] Get:107 http://ftpmaster.internal/ubuntu/ precise/main libdrm-dev i386 2.4.30-1ubuntu1 [159 kB] Get:108 http://ftpmaster.internal/ubuntu/ precise/main mesa-common-dev i386 8.0~rc2-0ubuntu5 [329 kB] Get:109 http://ftpmaster.internal/ubuntu/ precise/main libgl1-mesa-dev i386 8.0~rc2-0ubuntu5 [5196 B] Get:110 http://ftpmaster.internal/ubuntu/ precise/main libglu1-mesa-dev i386 8.0~rc2-0ubuntu5 [255 kB] Get:111 http://ftpmaster.internal/ubuntu/ precise/main libpcre3-dev i386 8.12-4 [226 kB] Get:112 http://ftpmaster.internal/ubuntu/ precise/main libpng12-dev i386 1.2.46-3ubuntu1 [207 kB] Get:113 http://ftpmaster.internal/ubuntu/ precise/main libxmu-headers all 2:1.1.0-3 [56.4 kB] Get:114 http://ftpmaster.internal/ubuntu/ precise/main libxmu-dev i386 2:1.1.0-3 [58.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 21.5 MB in 1s (13.2 MB/s) Selecting previously unselected package libexpat1. (Reading database ... 14381 files and directories currently installed.) Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_i386.deb) ... Selecting previously unselected package libpopt0. Unpacking libpopt0 (from .../libpopt0_1.16-3ubuntu1_i386.deb) ... Selecting previously unselected package libpipeline1. Unpacking libpipeline1 (from .../libpipeline1_1.2.0-5_i386.deb) ... Selecting previously unselected package libxau6. Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_i386.deb) ... Selecting previously unselected package libxdmcp6. Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_i386.deb) ... Selecting previously unselected package libxcb1. Unpacking libxcb1 (from .../libxcb1_1.8-2_i386.deb) ... Selecting previously unselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.4.99.1-0ubuntu1_all.deb) ... Selecting previously unselected package libx11-6. Unpacking libx11-6 (from .../libx11-6_2%3a1.4.99.1-0ubuntu1_i386.deb) ... 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Selecting previously unselected package liblcms1. Unpacking liblcms1 (from .../liblcms1_1.19.dfsg-1ubuntu3_i386.deb) ... Selecting previously unselected package libltdl7. Unpacking libltdl7 (from .../libltdl7_2.4.2-1ubuntu1_i386.deb) ... Selecting previously unselected package libpcrecpp0. Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_i386.deb) ... Selecting previously unselected package libsm6. Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_i386.deb) ... Selecting previously unselected package libtiff4. Unpacking libtiff4 (from .../libtiff4_3.9.5-2_i386.deb) ... Selecting previously unselected package libxrender1. Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_i386.deb) ... Selecting previously unselected package libxft2. Unpacking libxft2 (from .../libxft2_2.2.0-3ubuntu1_i386.deb) ... Selecting previously unselected package libxt6. Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_i386.deb) ... Selecting previously unselected package libxmu6. 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Selecting previously unselected package libxdmcp-dev. Unpacking libxdmcp-dev (from .../libxdmcp-dev_1%3a1.1.0-4_i386.deb) ... Selecting previously unselected package x11proto-input-dev. Unpacking x11proto-input-dev (from .../x11proto-input-dev_2.1.99.6-1_all.deb) ... Selecting previously unselected package x11proto-kb-dev. Unpacking x11proto-kb-dev (from .../x11proto-kb-dev_1.0.5-2_all.deb) ... Selecting previously unselected package xtrans-dev. Unpacking xtrans-dev (from .../xtrans-dev_1.2.6-2_all.deb) ... Selecting previously unselected package libpthread-stubs0. Unpacking libpthread-stubs0 (from .../libpthread-stubs0_0.3-3_i386.deb) ... Selecting previously unselected package libpthread-stubs0-dev. Unpacking libpthread-stubs0-dev (from .../libpthread-stubs0-dev_0.3-3_i386.deb) ... Selecting previously unselected package libxcb1-dev. Unpacking libxcb1-dev (from .../libxcb1-dev_1.8-2_i386.deb) ... Selecting previously unselected package libx11-dev. Unpacking libx11-dev (from .../libx11-dev_2%3a1.4.99.1-0ubuntu1_i386.deb) ... Selecting previously unselected package x11proto-xext-dev. Unpacking x11proto-xext-dev (from .../x11proto-xext-dev_7.2.0-3_all.deb) ... Selecting previously unselected package libxext-dev. Unpacking libxext-dev (from .../libxext-dev_2%3a1.3.0-3_i386.deb) ... Selecting previously unselected package x11proto-print-dev. Unpacking x11proto-print-dev (from .../x11proto-print-dev_1.0.5-2_all.deb) ... Selecting previously unselected package libxp-dev. Unpacking libxp-dev (from .../libxp-dev_1%3a1.0.1-2_i386.deb) ... Selecting previously unselected package libxt-dev. Unpacking libxt-dev (from .../libxt-dev_1%3a1.1.1-2_i386.deb) ... Selecting previously unselected package x11proto-render-dev. Unpacking x11proto-render-dev (from .../x11proto-render-dev_2%3a0.11.1-2_all.deb) ... Selecting previously unselected package libxrender-dev. Unpacking libxrender-dev (from .../libxrender-dev_1%3a0.9.6-2_i386.deb) ... Selecting previously unselected package libexpat1-dev. Unpacking libexpat1-dev (from .../libexpat1-dev_2.0.1-7.2_i386.deb) ... Selecting previously unselected package zlib1g-dev. Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3ubuntu4_i386.deb) ... Selecting previously unselected package libfreetype6-dev. Unpacking libfreetype6-dev (from .../libfreetype6-dev_2.4.8-1_i386.deb) ... Selecting previously unselected package pkg-config. Unpacking pkg-config (from .../pkg-config_0.26-1ubuntu1_i386.deb) ... Selecting previously unselected package libfontconfig1-dev. Unpacking libfontconfig1-dev (from .../libfontconfig1-dev_2.8.0-3ubuntu3_i386.deb) ... Selecting previously unselected package libxft-dev. Unpacking libxft-dev (from .../libxft-dev_2.2.0-3ubuntu1_i386.deb) ... Selecting previously unselected package lesstif2-dev. Unpacking lesstif2-dev (from .../lesstif2-dev_1%3a0.95.2-1_i386.deb) ... Selecting previously unselected package libdrm-dev. Unpacking libdrm-dev (from .../libdrm-dev_2.4.30-1ubuntu1_i386.deb) ... Selecting previously unselected package mesa-common-dev. Unpacking mesa-common-dev (from .../mesa-common-dev_8.0~rc2-0ubuntu5_i386.deb) ... Selecting previously unselected package libgl1-mesa-dev. Unpacking libgl1-mesa-dev (from .../libgl1-mesa-dev_8.0~rc2-0ubuntu5_i386.deb) ... Selecting previously unselected package libglu1-mesa-dev. Unpacking libglu1-mesa-dev (from .../libglu1-mesa-dev_8.0~rc2-0ubuntu5_i386.deb) ... Selecting previously unselected package libpcre3-dev. Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_i386.deb) ... Selecting previously unselected package libpng12-dev. Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3ubuntu1_i386.deb) ... Selecting previously unselected package libxmu-headers. Unpacking libxmu-headers (from .../libxmu-headers_2%3a1.1.0-3_all.deb) ... Selecting previously unselected package libxmu-dev. Unpacking libxmu-dev (from .../libxmu-dev_2%3a1.1.0-3_i386.deb) ... Setting up libexpat1 (2.0.1-7.2) ... Setting up libpopt0 (1.16-3ubuntu1) ... Setting up libpipeline1 (1.2.0-5) ... Setting up libxau6 (1:1.0.6-4) ... Setting up libxdmcp6 (1:1.1.0-4) ... Setting up libxcb1 (1.8-2) ... Setting up libx11-data (2:1.4.99.1-0ubuntu1) ... Setting up libx11-6 (2:1.4.99.1-0ubuntu1) ... Setting up libxext6 (2:1.3.0-3) ... Setting up libxml2 (2.7.8.dfsg-5.1ubuntu3) ... Setting up libcroco3 (0.6.4-1) ... Setting up libfreetype6 (2.4.8-1) ... Setting up ucf (3.0025+nmu2ubuntu1) ... Setting up ttf-dejavu-core (2.33-2) ... Setting up fontconfig-config (2.8.0-3ubuntu3) ... Setting up libfontconfig1 (2.8.0-3ubuntu3) ... Setting up libunistring0 (0.9.3-5) ... Setting up libgettextpo0 (0.18.1.1-5ubuntu3) ... Setting up libglapi-mesa (8.0~rc2-0ubuntu5) ... Setting up libx11-xcb1 (2:1.4.99.1-0ubuntu1) ... Setting up libxcb-glx0 (1.8-2) ... Setting up libxdamage1 (1:1.1.3-2) ... Setting up libxfixes3 (1:5.0-4ubuntu1) ... Setting up libxxf86vm1 (1:1.1.1-2) ... Setting up libgl1-mesa-glx (8.0~rc2-0ubuntu5) ... update-alternatives: using /usr/lib/i386-linux-gnu/mesa/ld.so.conf to provide /etc/ld.so.conf.d/i386-linux-gnu_GL.conf (i386-linux-gnu_gl_conf) in auto mode. Setting up x11-common (1:7.6+10ubuntu1) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6 (2:1.0.7-2) ... Setting up libjpeg-turbo8 (1.1.90+svn733-0ubuntu4) ... Setting up libjpeg8 (8c-2ubuntu6) ... Setting up libjasper1 (1.900.1-13) ... Setting up libkms1 (2.4.30-1ubuntu1) ... Setting up liblcms1 (1.19.dfsg-1ubuntu3) ... Setting up libltdl7 (2.4.2-1ubuntu1) ... Setting up libpcrecpp0 (8.12-4) ... Setting up libsm6 (2:1.2.0-2) ... Setting up libtiff4 (3.9.5-2) ... Setting up libxrender1 (1:0.9.6-2) ... Setting up libxft2 (2.2.0-3ubuntu1) ... Setting up libxt6 (1:1.1.1-2) ... Setting up libxmu6 (2:1.1.0-3) ... Setting up libxp6 (1:1.0.1-2) ... Setting up libglu1-mesa (8.0~rc2-0ubuntu5) ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-5ubuntu3) ... Setting up groff-base (1.21-6) ... Setting up libbsd0 (0.3.0-1) ... Setting up man-db (2.6.0.2-3) ... Building database of manual pages ... Setting up csh (20110502-2ubuntu1) ... update-alternatives: using /bin/bsd-csh to provide /bin/csh (csh) in auto mode. Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up debhelper (9.20120115ubuntu2) ... Setting up libencode-locale-perl (1.02-2) ... Setting up libhttp-date-perl (6.00-1) ... Setting up libfile-listing-perl (6.03-1) ... Setting up liburi-perl (1.59-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.69-1build1) ... Setting up libhtml-tree-perl (4.2-1) ... Setting up liblwp-mediatypes-perl (6.01-1) ... Setting up libhttp-message-perl (6.01-1) ... Setting up libhttp-cookies-perl (6.00-2) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-http-perl (6.02-1) ... Setting up libnet-ssleay-perl (1.42-1build1) ... Setting up libio-socket-ssl-perl (1.53-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up liblqr-1-0 (0.4.1-1.1) ... Setting up imagemagick-common (8:6.6.9.7-5ubuntu2) ... Setting up libmagickcore4 (8:6.6.9.7-5ubuntu2) ... Setting up libmagickwand4 (8:6.6.9.7-5ubuntu2) ... Setting up imagemagick (8:6.6.9.7-5ubuntu2) ... Setting up lesstif2 (1:0.95.2-1) ... Setting up xorg-sgml-doctools (1:1.10-1) ... Setting up x11proto-core-dev (7.0.22-1) ... Setting up libice-dev (2:1.0.7-2) ... Setting up libsm-dev (2:1.2.0-2) ... Setting up libxau-dev (1:1.0.6-4) ... Setting up libxdmcp-dev (1:1.1.0-4) ... Setting up x11proto-input-dev (2.1.99.6-1) ... Setting up x11proto-kb-dev (1.0.5-2) ... Setting up xtrans-dev (1.2.6-2) ... Setting up libpthread-stubs0 (0.3-3) ... Setting up libpthread-stubs0-dev (0.3-3) ... Setting up libxcb1-dev (1.8-2) ... Setting up libx11-dev (2:1.4.99.1-0ubuntu1) ... Setting up x11proto-xext-dev (7.2.0-3) ... Setting up libxext-dev (2:1.3.0-3) ... Setting up x11proto-print-dev (1.0.5-2) ... Setting up libxp-dev (1:1.0.1-2) ... Setting up libxt-dev (1:1.1.1-2) ... Setting up x11proto-render-dev (2:0.11.1-2) ... Setting up libxrender-dev (1:0.9.6-2) ... Setting up libexpat1-dev (2.0.1-7.2) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3ubuntu4) ... Setting up libfreetype6-dev (2.4.8-1) ... Setting up pkg-config (0.26-1ubuntu1) ... Setting up libfontconfig1-dev (2.8.0-3ubuntu3) ... Setting up libxft-dev (2.2.0-3ubuntu1) ... Setting up lesstif2-dev (1:0.95.2-1) ... Setting up libdrm-dev (2.4.30-1ubuntu1) ... Setting up mesa-common-dev (8.0~rc2-0ubuntu5) ... Setting up libgl1-mesa-dev (8.0~rc2-0ubuntu5) ... Setting up libglu1-mesa-dev (8.0~rc2-0ubuntu5) ... Setting up libpcre3-dev (8.12-4) ... Setting up libpng12-dev (1.2.46-3ubuntu1) ... Setting up libxmu-headers (2:1.1.0-3) ... Setting up libxmu-dev (2:1.1.0-3) ... Setting up liblwp-protocol-https-perl (6.02-1) ... Setting up libwww-perl (6.03-1) ... Setting up icoutils (0.29.1-2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.15-0ubuntu2 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu5 gcc-4.6_4.6.2-12ubuntu1 g++-4.6_4.6.2-12ubuntu1 binutils_2.22-5ubuntu1 libstdc++6-4.6-dev_4.6.2-12ubuntu1 libstdc++6_4.6.2-12ubuntu1 ------------------------------------------------------------------------------ gpgv: Signature made Fri Feb 10 22:57:50 2012 UTC using RSA key ID 21B2133D gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./ncbi-tools6_6.1.20110713-3ubuntu2.dsc dpkg-source: info: extracting ncbi-tools6 in ncbi-tools6-6.1.20110713 dpkg-source: info: unpacking ncbi-tools6_6.1.20110713.orig.tar.gz dpkg-source: info: applying ncbi-tools6_6.1.20110713-3ubuntu2.diff.gz dpkg-source: info: upstream files that have been modified: ncbi-tools6-6.1.20110713/api/alignmgr2.c ncbi-tools6-6.1.20110713/api/aliread.c ncbi-tools6-6.1.20110713/api/pgppop.c ncbi-tools6-6.1.20110713/api/txalign.c ncbi-tools6-6.1.20110713/corelib/ncbienv.c ncbi-tools6-6.1.20110713/corelib/ncbimain.c ncbi-tools6-6.1.20110713/desktop/bspview.c ncbi-tools6-6.1.20110713/desktop/ingenwin.c ncbi-tools6-6.1.20110713/desktop/seqpanel.c ncbi-tools6-6.1.20110713/doc/firewall.html ncbi-tools6-6.1.20110713/doc/fwd_check.sh ncbi-tools6-6.1.20110713/doc/man/Psequin.1 ncbi-tools6-6.1.20110713/doc/man/asn2all.1 ncbi-tools6-6.1.20110713/doc/man/asn2fsa.1 ncbi-tools6-6.1.20110713/doc/man/asn2gb.1 ncbi-tools6-6.1.20110713/doc/man/asndisc.1 ncbi-tools6-6.1.20110713/doc/man/asnmacro.1 ncbi-tools6-6.1.20110713/doc/man/asntool.1 ncbi-tools6-6.1.20110713/doc/man/asnval.1 ncbi-tools6-6.1.20110713/doc/man/blast.1 ncbi-tools6-6.1.20110713/doc/man/blast2.1 ncbi-tools6-6.1.20110713/doc/man/cleanasn.1 ncbi-tools6-6.1.20110713/doc/man/idfetch.1 ncbi-tools6-6.1.20110713/doc/man/nps2gps.1 ncbi-tools6-6.1.20110713/doc/man/tbl2asn.1 ncbi-tools6-6.1.20110713/make/makeall.unx ncbi-tools6-6.1.20110713/make/makedemo.unx ncbi-tools6-6.1.20110713/make/makenet.unx ncbi-tools6-6.1.20110713/make/makeshlb.unx ncbi-tools6-6.1.20110713/tools/readdb.c ncbi-tools6-6.1.20110713/tools/spidey.c ncbi-tools6-6.1.20110713/vibrant/netscape.c ncbi-tools6-6.1.20110713/vibrant/shim3d.c ncbi-tools6-6.1.20110713/vibrant/vibmain.c ncbi-tools6-6.1.20110713/vibrant/vibwndws.c dpkg-buildpackage: source package ncbi-tools6 dpkg-buildpackage: source version 6.1.20110713-3ubuntu2 dpkg-source --before-build ncbi-tools6-6.1.20110713 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean dh clean dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/build/buildd/ncbi-tools6-6.1.20110713' rm -rf build/* bin/* include/* lib/* shlib mkdir -p build bin include lib rm -f debian/*.menu debian/asntool.xpm debian/ncbilogo.xpm make[1]: Leaving directory `/build/buildd/ncbi-tools6-6.1.20110713' dh_clean debian/rules build dh build dh_testdir dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory `/build/buildd/ncbi-tools6-6.1.20110713' cd build && ln -s ../make/*.unx . ln -s ../make/ln-if-absent build mv build/makeall.unx build/makefile chmod +x debian/makemenu debian/installman /usr/bin/make -C build all LCL=lnx CC="gcc " LDFLAGS1="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" NCBI_LINKINGLIBDIR="../shlib" \ CFLAGS1="-c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC" \ LIB4=libvibrant.a LIB20=libncbidesk.a LIB28=libvibgif.a \ LIB30=libncbicn3d.a LIB45=libddvlib.a LIB400=libvibrantOGL.a LIB3000=libncbicn3dOGL.a make[2]: Entering directory `/build/buildd/ncbi-tools6-6.1.20110713/build' chmod -R ug+rw,o+r . ../include ./ln-if-absent ../corelib/tsprintf.h ../include ./ln-if-absent ../corelib/gifgen.h ../include ./ln-if-absent ../corelib/ncbi*.h ../include ./ln-if-absent ../corelib/tree*.h ../include ./ln-if-absent ../corelib/regex.h ../include ./ln-if-absent ../corelib/matrix.h ../include ./ln-if-absent ../corelib/binary.h ../include ./ln-if-absent ../corelib/morefile/*.h ../include ./ln-if-absent ../corelib/morefile/*.c . ./ln-if-absent ../link/macmet/MoreCarbonAccessors.h ../include ./ln-if-absent ../corelib/ncbilcl.lnx ../include/ncbilcl.h ./ln-if-absent ../corelib/*.c . ./ln-if-absent ../corelib/core*.h . ./ln-if-absent ../asnlib/*.h . rm -f ../include/asn.h mv asn.h ../include ./ln-if-absent ../asnlib/*.c . ./ln-if-absent ../connect/*.c . ./ln-if-absent ../connect/ncbi_ansi_ext.h . ./ln-if-absent ../connect/ncbi_assert.h . ./ln-if-absent ../connect/ncbi_priv.h . ./ln-if-absent ../connect/ncbi_comm.h . ./ln-if-absent ../connect/ncbi_config.h . ./ln-if-absent ../connect/ncbi_connssl.h . ./ln-if-absent ../connect/ncbi_lbsm.h . make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../connect/ncbi_lbsm_ipc.h . make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../connect/ncbi_host_infop.h . ./ln-if-absent ../connect/ncbi_server_infop.h . ./ln-if-absent ../connect/ncbi_servicep.h . ./ln-if-absent ../connect/ncbi_socketp.h . ./ln-if-absent ../connect/ncbi_dispd.h . ./ln-if-absent ../connect/ncbi_lbsmd.h . ./ln-if-absent ../connect/ncbi_local.h . ./ln-if-absent ../connect/ncbi_lb.h . ./ln-if-absent ../connect/ncbi_version.h . ./ln-if-absent ../connect/ncbi_base64.h . ./ln-if-absent ../connect/urlquery.h ../include mkdir ../include/connect chmod ug+rw,o+r ../include/connect cp -fp ../connect/ncbi_*.h ../connect/connect_export.h ../include/connect ./ln-if-absent ../util/tables/*.c . mkdir -p ../include/util/tables cp -fp ../util/tables/*.h ../include/util/tables ./ln-if-absent ../util/creaders/*.c . mkdir -p ../include/util/creaders cp -fp ../util/creaders/*.h ../include/util/creaders ./ln-if-absent ../ctools/*.c . ./ln-if-absent ../ctools/*.h . mkdir ../include/ctools chmod ug+rw,o+r ../include/ctools cp -fp ../ctools/*.h ../include/ctools ./ln-if-absent ../object/*.c . ./ln-if-absent ../object/*.h ../include ./ln-if-absent ../access/*.c . ./ln-if-absent ../access/*.h ../include ./ln-if-absent ../asnstat/*.h ../include ./ln-if-absent ../api/*.h ../include ./ln-if-absent ../api/*.c . ./ln-if-absent ../api/*.inc . ./ln-if-absent ../cdromlib/*.h ../include ./ln-if-absent ../cdromlib/*.c . ./ln-if-absent ../vibrant/*.h ../include ./ln-if-absent ../vibrant/*.c . ./ln-if-absent ../desktop/*.h ../include ./ln-if-absent ../desktop/*.c . ./ln-if-absent ../biostruc/*.h ../include ./ln-if-absent ../biostruc/*.c . ./ln-if-absent ../biostruc/cdd/*.h ../include ./ln-if-absent ../biostruc/cdd/*.c . ./ln-if-absent ../biostruc/cn3d/*.h ../include ./ln-if-absent ../biostruc/cn3d/*.c . ./ln-if-absent ../tools/*.h ../include ./ln-if-absent ../tools/*.c . ./ln-if-absent ../cn3d/*.h ../include ./ln-if-absent ../cn3d/*.c . ./ln-if-absent ../gif/*.c . ./ln-if-absent ../gif/*.h ../include ./ln-if-absent ../ddv/*.h ../include ./ln-if-absent ../ddv/*.c . ./ln-if-absent ../regexp/*.c . ./ln-if-absent ../regexp/*.h ../include ./ln-if-absent ../internal/compr/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/compr/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libindx/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libindx/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libpars/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libpars/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/*.dat . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/ideochr*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/ideoorgs.h . make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ccap/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ccap/*.dat . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ccap/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ncbidraw.c ncbidrwg.c ./ln-if-absent ncbithr.c ncbithrs.c ./ln-if-absent ../network/nsclilib/*.h ../include ./ln-if-absent ../network/blast3/client/*.h ../include ./ln-if-absent ../network/id1arch/*.h ../include ./ln-if-absent ../network/id2arch/*.h ../include mkdir -p ../include/algo/blast/core ./ln-if-absent ../algo/blast/core/*.c . ./ln-if-absent ../algo/blast/core/*.h . ./ln-if-absent ../algo/blast/core/*.inl . cp -fp ../algo/blast/core/*.h ../include/algo/blast/core mkdir -p ../include/algo/blast/composition_adjustment ./ln-if-absent ../algo/blast/composition_adjustment/*.c . cp -fp ../algo/blast/composition_adjustment/*.h \ ../include/algo/blast/composition_adjustment mkdir -p ../include/algo/blast/api ./ln-if-absent ../algo/blast/api/*.c . cp -fp ../algo/blast/api/*.h ../include/algo/blast/api chmod -R ug+rw,o+r . echo Waiting...go Waiting...go gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbithr.c ncbithr.c: In function 's_TlsDestroyAll': ncbithr.c:2529:11: warning: variable 'err_code' set but not used [-Wunused-but-set-variable] cp -p ncbithr.o ../lib gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbimain.c ncbimain.c:82:1: warning: return type defaults to 'int' [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbibs.c ncbibs.c: In function 'Nlm_BSMerge': ncbibs.c:106:3: warning: statement with no effect [-Wunused-value] ncbibs.c: In function 'Nlm_BSAdd': ncbibs.c:210:4: warning: statement with no effect [-Wunused-value] ncbibs.c:222:4: warning: statement with no effect [-Wunused-value] ncbibs.c:223:4: warning: statement with no effect [-Wunused-value] ncbibs.c: In function 'Nlm_BSDelete': ncbibs.c:336:4: warning: statement with no effect [-Wunused-value] ncbibs.c:341:4: warning: statement with no effect [-Wunused-value] ncbibs.c: In function 'Nlm_BSWrite': ncbibs.c:594:3: warning: statement with no effect [-Wunused-value] ncbibs.c: In function 'Nlm_BSRead': ncbibs.c:658:3: warning: statement with no effect [-Wunused-value] ncbibs.c: In function 'Nlm_BSGetByte': ncbibs.c:702:2: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF wwwutils.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbierr.c In file included from /usr/include/string.h:642:0, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from corepriv.h:85, from ncbierr.c:235: In function 'strncat', inlined from 'ErrMsgRoot_fopen.isra.1' at ncbierr.c:955:20: /usr/include/i386-linux-gnu/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbienv.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbifile.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbiprop.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbimath.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbimem.c ncbimem.c:181:0: warning: "__USE_BSD" redefined [enabled by default] /usr/include/features.h:293:0: note: this is the location of the previous definition gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbimisc.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbimsg.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbistr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbisgml.c In file included from /usr/include/string.h:642:0, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from ncbisgml.c:80: In function 'strncat', inlined from 'Nlm_Sgml2Ascii' at ncbisgml.c:265:12: /usr/include/i386-linux-gnu/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] In function 'strncat', inlined from 'Nlm_Sgml2Ascii' at ncbisgml.c:284:12: /usr/include/i386-linux-gnu/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] In function 'strncat', inlined from 'Nlm_Sgml2AsciiLen' at ncbisgml.c:340:12: /usr/include/i386-linux-gnu/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] In function 'strncat', inlined from 'Nlm_Sgml2AsciiLen' at ncbisgml.c:354:12: /usr/include/i386-linux-gnu/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbitime.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbilang.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF asnbufo.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF asndebin.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF asnenbin.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF asngen.c asngen.c: In function 'AsnFindNthPieceOfObject': asngen.c:540:16: warning: variable 'aeop' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF asnio.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF asnlex.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF asnlext.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF asnout.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF asnprint.c asnprint.c: In function 'GetXMLModuleName': asnprint.c:102:2: warning: statement with no effect [-Wunused-value] asnprint.c: In function 'AsnPrintCloseStruct': asnprint.c:1742:7: warning: variable 'isa' set but not used [-Wunused-but-set-variable] asnprint.c: In function 'AsnPrintModuleXMLInc': asnprint.c:2063:10: warning: variable 'ptr' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF asntypes.c asntypes.c: In function 'AsnTreeLoad': asntypes.c:1274:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] asntypes.c:1288:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] asntypes.c:1301:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] asntypes.c:1333:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF asngenob.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF gifgen.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF togif.c togif.c: In function 'gdImageCreateFromGif': togif.c:961:12: warning: variable 'AspectRatio' set but not used [-Wunused-but-set-variable] togif.c:960:12: warning: variable 'Background' set but not used [-Wunused-but-set-variable] togif.c:959:12: warning: variable 'ColorResolution' set but not used [-Wunused-but-set-variable] gcc -DNCBI_NOTHREADS_AVAIL -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbithrs.c ncbithrs.c: In function 's_TlsDestroyAll': ncbithrs.c:2529:11: warning: unused variable 'err_code' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -DHAVE_STRING_H -DREGEX_MALLOC regex.c regex.c: In function 're_match_2': regex.c:3768:19: warning: unused variable 'destination' [-Wunused-variable] regex.c:3915:11: warning: unused variable 'destination' [-Wunused-variable] regex.c:3968:11: warning: unused variable 'destination' [-Wunused-variable] regex.c:4071:25: warning: variable 'sdummy' set but not used [-Wunused-but-set-variable] regex.c:4070:28: warning: variable 'pdummy' set but not used [-Wunused-but-set-variable] regex.c:4107:11: warning: unused variable 'destination' [-Wunused-variable] regex.c:4120:11: warning: unused variable 'destination' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF tsprintf.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbiargs.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF tree.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF matrix.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_socket.c ncbi_socket.c: In function 's_GetLocalPort': ncbi_socket.c:533:33: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign] /usr/include/i386-linux-gnu/sys/socket.h:119:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c: In function 's_IsConnected': ncbi_socket.c:2528:9: warning: pointer targets in passing argument 5 of 'getsockopt' differ in signedness [-Wpointer-sign] /usr/include/i386-linux-gnu/sys/socket.h:190:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c: In function 'TRIGGER_Create': ncbi_socket.c:4046:18: warning: unused variable 'x_id' [-Wunused-variable] ncbi_socket.c: In function 's_CreateListening': ncbi_socket.c:4498:9: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign] /usr/include/i386-linux-gnu/sys/socket.h:119:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c: In function 's_Accept': ncbi_socket.c:4763:5: warning: pointer targets in passing argument 3 of 'accept' differ in signedness [-Wpointer-sign] /usr/include/i386-linux-gnu/sys/socket.h:214:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c: In function 'SOCK_CreateOnTopEx': ncbi_socket.c:5189:5: warning: pointer targets in passing argument 3 of 'getpeername' differ in signedness [-Wpointer-sign] /usr/include/i386-linux-gnu/sys/socket.h:133:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c:5225:13: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign] /usr/include/i386-linux-gnu/sys/socket.h:119:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c: In function 'DSOCK_RecvMsg': ncbi_socket.c:6803:35: warning: pointer targets in passing argument 6 of 'recvfrom' differ in signedness [-Wpointer-sign] /usr/include/i386-linux-gnu/bits/socket2.h:65:1: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_buffer.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_types.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_core.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_core_c.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_util.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_priv.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_ansi_ext.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_connection.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_connector.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_connutil.c ncbi_connutil.c: In function 'ConnNetInfo_Clone': ncbi_connutil.c:1023:17: warning: variable 'svc' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_file_connector.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_heapmgr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_http_connector.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_memory_connector.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_lbsmd_stub.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_host_info.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_server_info.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_service.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_version.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_service_connector.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_ftp_connector.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_dispd.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_lb.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_local.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_socket_connector.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF urlquery.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF binary.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_sendmail.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_base64.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF asn_connection.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF raw_scoremat.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF drwnflpt.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF drwnfspc.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF drwnmfls.c rm -f libncbi.a ar cru libncbi.a ncbimain.o ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o matrix.o ncbi_socket.o ncbi_buffer.o ncbi_types.o ncbi_core.o ncbi_core_c.o ncbi_util.o ncbi_priv.o ncbi_ansi_ext.o ncbi_connection.o ncbi_connector.o ncbi_connutil.o ncbi_file_connector.o ncbi_heapmgr.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_lbsmd_stub.o ncbi_host_info.o ncbi_server_info.o ncbi_service.o ncbi_version.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_dispd.o ncbi_lb.o ncbi_local.o ncbi_socket_connector.o urlquery.o binary.o ncbi_sendmail.o ncbi_base64.o asn_connection.o raw_scoremat.o drwnflpt.o drwnfspc.o drwnmfls.o cp -p libncbi.a ../lib ranlib ../lib/libncbi.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objacces.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objalign.c objalign.c: In function 'CommonSeqAlignLabelFunc': objalign.c:135:27: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SplicedSegAsnRead': objalign.c:2160:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SparseSegAsnRead': objalign.c:2400:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SplicedExonAsnRead': objalign.c:2591:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SplicedSegModifierFree': objalign.c:2849:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objalign.c: In function 'ProductPosFree': objalign.c:3022:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SplicedExonChunkFree': objalign.c:3195:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SpliceSiteAsnRead': objalign.c:3437:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'ProtPosAsnRead': objalign.c:3591:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SparseAlignAsnRead': objalign.c:3760:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SparseSegExtAsnRead': objalign.c:3979:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SplicedExonChunkAsnRead': objalign.c:3296:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objalign.c: In function 'SplicedSegModifierAsnRead': objalign.c:2929:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objall.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objbibli.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objfeat.c objfeat.c: In function 'ModelEvidenceSupportAsnRead': objfeat.c:1494:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'ExperimentSupportAsnRead': objfeat.c:1739:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'ProgramIdAsnRead': objfeat.c:1921:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'EvidenceBasisAsnRead': objfeat.c:2088:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'InferenceSupportAsnRead': objfeat.c:2252:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'ModelEvidenceItemAsnRead': objfeat.c:2465:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'SeqFeatSupportAsnRead': objfeat.c:2667:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'RNAQualAsnRead': objfeat.c:4192:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'RNAQualSetAsnRead': objfeat.c:4341:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'RNAGenAsnRead': objfeat.c:4469:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'GeneNomenclatureAsnRead': objfeat.c:4649:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'PCRPrimerAsnRead': objfeat.c:8191:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'PCRPrimerSetAsnRead': objfeat.c:8333:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'PCRReactionAsnRead': objfeat.c:8454:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'PCRReactionSetAsnRead': objfeat.c:8597:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'CloneRefAsnRead': objfeat.c:8724:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'CloneSeqSetAsnRead': objfeat.c:8914:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'CloneSeqAsnRead': objfeat.c:9044:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'SomaticOriginAsnRead': objfeat.c:9382:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'SomaticOriginConditionAsnRead': objfeat.c:9461:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'VariationRefAsnRead': objfeat.c:9540:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'ConsequenceAsnWrite': objfeat.c:10101:12: warning: variable 'av' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'Consequence_loss_of_heterozygosityAsnRead': objfeat.c:10561:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'Consequence_frameshiftAsnRead': objfeat.c:10639:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'VarRefDataFree': objfeat.c:10739:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'VarRefDataSetAsnRead': objfeat.c:10792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'Consequence_elementFree': objfeat.c:10986:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'VariationInstAsnRead': objfeat.c:11115:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: At top level: objfeat.c:11264:1: warning: "/*" within comment [-Wcomment] objfeat.c: In function 'VariantPropertiesAsnRead': objfeat.c:11293:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'PhenotypeAsnRead': objfeat.c:11614:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'PopulationDataAsnRead': objfeat.c:11810:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'ExtLocAsnRead': objfeat.c:12023:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'Seq_seqFree': objfeat.c:12188:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'DeltaItemAsnRead': objfeat.c:12221:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'Consequence_elementAsnRead': objfeat.c:10528:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objfeat.c: In function 'CodeBreakAsnWrite': objfeat.c:3647:19: warning: 'tmp' may be used uninitialized in this function [-Wuninitialized] objfeat.c: In function 'VarRefDataAsnRead': objfeat.c:10954:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objgen.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objloc.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objmedli.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objpub.c objpub.c: In function 'PubLabelUnique': objpub.c:1353:17: warning: unused variable 'pmid' [-Wunused-variable] objpub.c:1353:7: warning: unused variable 'muid' [-Wunused-variable] objpub.c: In function 'PubSetAsnRead': objpub.c:869:13: warning: 'func' may be used uninitialized in this function [-Wuninitialized] objpub.c:880:25: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objres.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objscoremat.c objscoremat.c: In function 'PssmAsnRead': objscoremat.c:93:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'PssmIntermediateDataAsnRead': objscoremat.c:336:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'PssmFinalDataAsnRead': objscoremat.c:544:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'PssmParametersAsnRead': objscoremat.c:759:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'PssmWithParametersAsnRead': objscoremat.c:936:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'BlockPropertyAsnRead': objscoremat.c:1102:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'CoreBlockAsnRead': objscoremat.c:1275:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'LoopConstraintAsnRead': objscoremat.c:1463:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'CoreDefAsnRead': objscoremat.c:1626:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'FormatRpsDbParametersAsnRead': objscoremat.c:1794:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objseq.c objseq.c: In function 'SeqGapAsnRead': objseq.c:1602:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objseq.c: In function 'SeqDescrAsnWriteExtra': objseq.c:1860:48: warning: variable 'had_anp' set but not used [-Wunused-but-set-variable] objseq.c: In function 'SeqDescAsnRead': objseq.c:2283:28: warning: 'tmp' may be used uninitialized in this function [-Wuninitialized] objseq.c: In function 'BioseqAsnRead': objseq.c:976:27: warning: 'osp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objblock.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objcode.c objcode.c:45:51: warning: "/*" within comment [-Wcomment] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objsset.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objsub.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objprt.c objprt.c: In function 'PrintFormBooleanAsnRead': objprt.c:877:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'PrintFormEnumAsnRead': objprt.c:992:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'PrintFormTextAsnRead': objprt.c:1100:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'UserFormatAsnRead': objprt.c:1209:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'PrintFormAsnRead': objprt.c:591:6: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'PrintFormatAsnRead': objprt.c:429:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'PrintFormBlockAsnRead': objprt.c:755:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'PrintTemplateAsnRead': objprt.c:247:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objfdef.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objalignloc.c objalignloc.c: In function 'AlignLocSetAsnRead': objalignloc.c:69:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalignloc.c: In function 'Loc_locFree': objalignloc.c:196:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objalignloc.c: In function 'AlignLocAsnRead': objalignloc.c:233:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalignloc.c:232:12: warning: unused variable 'isError' [-Wunused-variable] objalignloc.c: In function 'Loc_locAsnRead': objalignloc.c:313:12: warning: unused variable 'isError' [-Wunused-variable] objalignloc.c: In function 'AlignIdFree': objalignloc.c:525:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objalignloc.c: In function 'AlignIdAsnRead': objalignloc.c:557:12: warning: unused variable 'isError' [-Wunused-variable] objalignloc.c: In function 'AlignBoxAsnRead': objalignloc.c:746:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalignloc.c:745:12: warning: unused variable 'isError' [-Wunused-variable] objalignloc.c: In function 'AlignRowsAsnRead': objalignloc.c:925:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalignloc.c:924:12: warning: unused variable 'isError' [-Wunused-variable] objalignloc.c: In function 'AlignColumnsAsnRead': objalignloc.c:1086:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalignloc.c:1085:12: warning: unused variable 'isError' [-Wunused-variable] objalignloc.c: In function 'AlignIdAsnRead': objalignloc.c:613:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objtable.c objtable.c: In function 'SeqTableColumnInfoAsnRead': objtable.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtable.c:86:12: warning: unused variable 'isError' [-Wunused-variable] objtable.c: In function 'SeqTableColumnAsnRead': objtable.c:268:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtable.c:267:12: warning: unused variable 'isError' [-Wunused-variable] objtable.c: In function 'SeqTableColumnAsnWrite': objtable.c:364:12: warning: unused variable 'av' [-Wunused-variable] objtable.c: In function 'SeqTableAsnRead': objtable.c:472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtable.c: In function 'CommonStringTableAsnRead': objtable.c:654:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtable.c: In function 'CommonStringTableAsnWrite': objtable.c:729:12: warning: unused variable 'av' [-Wunused-variable] objtable.c: In function 'CommonBytesTableAsnRead': objtable.c:815:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtable.c: In function 'CommonBytesTableAsnWrite': objtable.c:890:12: warning: unused variable 'av' [-Wunused-variable] objtable.c: In function 'SeqTableSingleDataFree': objtable.c:1220:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objtable.c: In function 'SeqTableSingleDataAsnRead': objtable.c:1264:12: warning: unused variable 'isError' [-Wunused-variable] objtable.c: In function 'SeqTableMultiDataAsnRead': objtable.c:1106:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objtable.c: In function 'SeqTableSingleDataAsnRead': objtable.c:1349:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objtable.c: In function 'SeqTableSparseIndexAsnRead': objtable.c:1554:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objpubme.c objpubme.c: In function 'PubmedEntryAsnRead': objpubme.c:89:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objpubme.c: In function 'PubmedUrlAsnRead': objpubme.c:285:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objpubme.c:284:12: warning: unused variable 'isError' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objmdrs.c objmdrs.c: In function 'MedlarsEntryAsnRead': objmdrs.c:85:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmdrs.c: In function 'MedlarsRecordAsnRead': objmdrs.c:256:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmdrs.c:255:12: warning: unused variable 'isError' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objproj.c objproj.c: In function 'ProjectAsnRead': objproj.c:116:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objproj.c:115:12: warning: unused variable 'isError' [-Wunused-variable] objproj.c: In function 'ProjectDescrAsnRead': objproj.c:718:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objproj.c: In function 'ProjdescFree': objproj.c:852:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objproj.c: In function 'ProjdescAsnRead': objproj.c:893:12: warning: unused variable 'isError' [-Wunused-variable] objproj.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] objproj.c: In function 'ProjdescAsnRead': objproj.c:953:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objgbseq.c objgbseq.c: In function 'GBSetAsnRead': objgbseq.c:68:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBSeqAsnRead': objgbseq.c:229:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBReferenceAsnRead': objgbseq.c:725:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBCommentAsnRead': objgbseq.c:963:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBStrucCommentAsnRead': objgbseq.c:1127:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBFeatureAsnRead': objgbseq.c:1295:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBFeatureSetAsnRead': objgbseq.c:1519:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBAltSeqDataAsnRead': objgbseq.c:1683:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBXrefAsnRead': objgbseq.c:1846:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBCommentParagraphAsnRead': objgbseq.c:2012:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBCommentItemAsnRead': objgbseq.c:2163:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBStrucCommentItemAsnRead': objgbseq.c:2330:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBIntervalAsnRead': objgbseq.c:2506:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBQualifierAsnRead': objgbseq.c:2716:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBAltSeqItemAsnRead': objgbseq.c:2887:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objtseq.c objtseq.c: In function 'TSeqAsnRead': objtseq.c:89:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtseq.c: In function 'TSeqSetAsnRead': objtseq.c:322:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtseq.c: In function 'BioseqToTSeq': objtseq.c:448:8: warning: variable 'seqcode' set but not used [-Wunused-but-set-variable] objtseq.c: In function 'BioseqToMiniTSeq': objtseq.c:560:8: warning: variable 'seqcode' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objinsdseq.c objinsdseq.c: In function 'INSDSetAsnRead': objinsdseq.c:68:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDSeqAsnRead': objinsdseq.c:229:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDReferenceAsnRead': objinsdseq.c:725:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDCommentAsnRead': objinsdseq.c:963:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDStrucCommentAsnRead': objinsdseq.c:1127:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDFeatureAsnRead': objinsdseq.c:1295:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDFeatureSetAsnRead': objinsdseq.c:1519:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDAltSeqDataAsnRead': objinsdseq.c:1683:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDXrefAsnRead': objinsdseq.c:1846:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDCommentParagraphAsnRead': objinsdseq.c:2012:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDCommentItemAsnRead': objinsdseq.c:2163:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDStrucCommentItemAsnRead': objinsdseq.c:2330:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDIntervalAsnRead': objinsdseq.c:2506:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDQualifierAsnRead': objinsdseq.c:2716:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDAltSeqItemAsnRead': objinsdseq.c:2887:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objmacro.c objmacro.c: In function 'AECRActionAsnRead': objmacro.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:86:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseActionAsnRead': objmacro.c:269:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:268:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MacroActionListAsnRead': objmacro.c:472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:469:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'MacroActionListAsnWrite': objmacro.c:525:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'SuspectRuleSetAsnRead': objmacro.c:586:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:583:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'SuspectRuleSetAsnWrite': objmacro.c:639:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'WordSubstitutionAsnRead': objmacro.c:719:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'WordSubstitutionSetAsnRead': objmacro.c:884:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:881:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'WordSubstitutionSetAsnWrite': objmacro.c:937:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'StringConstraintAsnRead': objmacro.c:1025:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:1024:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'StringConstraintSetAsnRead': objmacro.c:1266:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:1263:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'StringConstraintSetAsnWrite': objmacro.c:1319:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'LocationPosConstraintFree': objmacro.c:1359:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'LocationPosConstraintAsnRead': objmacro.c:1388:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'LocationConstraintAsnRead': objmacro.c:1587:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:1586:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FeatQualLegalValAsnRead': objmacro.c:1800:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:1799:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FeatQualLegalValChoiceFree': objmacro.c:1927:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FeatQualLegalValChoiceAsnRead': objmacro.c:1959:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FeatQualLegalSetAsnRead': objmacro.c:2111:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:2108:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'FeatQualLegalSetAsnWrite': objmacro.c:2164:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'FeatQualChoiceFree': objmacro.c:2204:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FeatQualChoiceAsnRead': objmacro.c:2236:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FeatureFieldAsnRead': objmacro.c:2415:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:2414:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FeatureFieldLegalAsnRead': objmacro.c:2579:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:2578:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FeatureFieldPairAsnRead': objmacro.c:2742:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:2741:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RnaFeatTypeFree': objmacro.c:2882:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'RnaFeatTypeAsnRead': objmacro.c:2914:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RnaQualAsnRead': objmacro.c:3162:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:3161:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RnaQualPairAsnRead': objmacro.c:3327:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:3326:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SourceQualPairAsnRead': objmacro.c:3500:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:3499:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SourceQualChoiceFree': objmacro.c:3625:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'SourceQualChoiceAsnRead': objmacro.c:3654:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SourceQualTextValAsnRead': objmacro.c:3869:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:3868:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SourceQualValChoiceFree': objmacro.c:3996:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'SourceQualValChoiceAsnRead': objmacro.c:4028:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SourceQualValSetAsnRead': objmacro.c:4224:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:4221:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'SourceQualValSetAsnWrite': objmacro.c:4277:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'CDSGeneProtFieldPairAsnRead': objmacro.c:4353:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:4352:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoFieldFree': objmacro.c:4478:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'MolinfoFieldAsnRead': objmacro.c:4507:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoMoleculePairAsnRead': objmacro.c:4732:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:4731:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoTechniquePairAsnRead': objmacro.c:4893:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:4892:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoCompletednessPairAsnRead': objmacro.c:5054:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:5053:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoMolClassPairAsnRead': objmacro.c:5215:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:5214:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoTopologyPairAsnRead': objmacro.c:5376:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:5375:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoStrandPairAsnRead': objmacro.c:5537:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:5536:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoFieldPairFree': objmacro.c:5662:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'MolinfoFieldPairAsnRead': objmacro.c:5709:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoFieldListAsnRead': objmacro.c:5901:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:5898:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'MolinfoFieldListAsnWrite': objmacro.c:5954:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'MolinfoFieldConstraintAsnRead': objmacro.c:6032:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:6031:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'StructuredCommentFieldFree': objmacro.c:6160:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'StructuredCommentFieldAsnRead': objmacro.c:6192:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'StructuredCommentFieldPairAsnRead': objmacro.c:6386:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:6385:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'StructuredCommentFieldPairAsnWrite': objmacro.c:6461:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'DBLinkFieldPairAsnRead': objmacro.c:6553:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:6552:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'PubFieldConstraintAsnRead': objmacro.c:6715:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:6714:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'PubFieldSpecialConstraintTypeFree': objmacro.c:6843:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'PubFieldSpecialConstraintTypeAsnRead': objmacro.c:6872:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'PubFieldSpecialConstraintAsnRead': objmacro.c:7087:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:7086:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'PublicationConstraintAsnRead': objmacro.c:7253:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:7252:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SourceConstraintAsnRead': objmacro.c:7432:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:7431:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'CDSGeneProtPseudoConstraintAsnRead': objmacro.c:7621:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:7620:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'CDSGeneProtConstraintFieldFree': objmacro.c:7746:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'CDSGeneProtConstraintFieldAsnRead': objmacro.c:7775:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'CDSGeneProtQualConstraintAsnRead': objmacro.c:7948:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:7947:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'CDSGeneProtQualConstraintAsnWrite': objmacro.c:8030:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'FieldConstraintAsnRead': objmacro.c:8129:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:8128:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FieldConstraintAsnWrite': objmacro.c:8204:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'FieldTypeFree': objmacro.c:8260:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FieldTypeAsnRead': objmacro.c:8304:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SequenceConstraintMolTypeConstraintFree': objmacro.c:8511:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'SequenceConstraintMolTypeConstraintAsnRead': objmacro.c:8540:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'QuantityConstraintFree': objmacro.c:8718:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'QuantityConstraintAsnRead': objmacro.c:8747:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SequenceConstraintAsnRead': objmacro.c:8944:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:8943:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'TranslationConstraintAsnRead': objmacro.c:9157:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:9156:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ConstraintChoiceFree': objmacro.c:9309:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ConstraintChoiceAsnRead': objmacro.c:9371:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ConstraintChoiceSetAsnRead': objmacro.c:9603:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:9600:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'ConstraintChoiceSetAsnWrite': objmacro.c:9656:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'TextMarkerFree': objmacro.c:9696:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'TextMarkerAsnRead': objmacro.c:9728:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'TextPortionAsnRead': objmacro.c:9924:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:9923:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FieldEditAsnRead': objmacro.c:10140:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:10139:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FieldPairTypeFree': objmacro.c:10287:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FieldPairTypeAsnRead': objmacro.c:10337:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ApplyActionAsnRead': objmacro.c:10554:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:10553:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'EditActionAsnRead': objmacro.c:10731:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:10730:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'EditActionAsnWrite': objmacro.c:10806:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'TextTransformFree': objmacro.c:10862:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'TextTransformAsnRead': objmacro.c:10897:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'TextTransformSetAsnRead': objmacro.c:11068:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:11065:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'TextTransformSetAsnWrite': objmacro.c:11121:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'ConvertActionAsnRead': objmacro.c:11201:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:11200:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'CopyActionAsnRead': objmacro.c:11393:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:11392:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SwapActionAsnRead': objmacro.c:11559:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:11558:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SwapActionAsnWrite': objmacro.c:11634:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'AECRParseActionAsnRead': objmacro.c:11732:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:11731:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveActionAsnRead': objmacro.c:11948:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:11947:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveActionAsnWrite': objmacro.c:12016:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'ActionChoiceFree': objmacro.c:12067:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ActionChoiceAsnRead': objmacro.c:12117:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseSrcOrgChoiceFree': objmacro.c:12296:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ParseSrcOrgChoiceAsnRead': objmacro.c:12325:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseSrcOrgAsnRead': objmacro.c:12508:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:12507:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseSrcGeneralIdFree': objmacro.c:12636:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ParseSrcGeneralIdAsnRead': objmacro.c:12668:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseSrcFree': objmacro.c:12824:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ParseSrcAsnRead': objmacro.c:12862:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseDstOrgAsnRead': objmacro.c:13116:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:13115:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseDestFree': objmacro.c:13244:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ParseDestAsnRead': objmacro.c:13282:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'LocationIntervalAsnRead': objmacro.c:13490:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:13489:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'LocationChoiceFree': objmacro.c:13615:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'LocationChoiceAsnRead': objmacro.c:13647:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SequenceListAsnRead': objmacro.c:13821:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:13818:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'SequenceListAsnWrite': objmacro.c:13874:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'SequenceListChoiceFree': objmacro.c:13914:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'SequenceListChoiceAsnRead': objmacro.c:13946:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ApplyFeatureActionAsnRead': objmacro.c:14135:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:14134:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveFeatureActionAsnRead': objmacro.c:14399:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:14398:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ConvertFromCDSOptionsAsnRead': objmacro.c:14563:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:14562:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ConvertFeatureSrcOptionsFree': objmacro.c:14697:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ConvertFeatureSrcOptionsAsnRead': objmacro.c:14729:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RegionTypeAsnRead': objmacro.c:14896:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:14895:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ConvertFeatureDstOptionsFree': objmacro.c:15012:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ConvertFeatureDstOptionsAsnRead': objmacro.c:15047:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ConvertFeatureActionAsnRead': objmacro.c:15261:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:15260:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'EditLocationStrandAsnRead': objmacro.c:15467:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:15466:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'Partial5SetActionAsnRead': objmacro.c:15628:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:15627:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'Partial3SetActionAsnRead': objmacro.c:15789:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:15788:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'PartialBothSetActionAsnRead': objmacro.c:15950:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:15949:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'LocationEditTypeFree': objmacro.c:16075:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'LocationEditTypeAsnRead': objmacro.c:16116:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'EditFeatureLocationActionAsnRead': objmacro.c:16375:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:16374:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoBlockAsnRead': objmacro.c:16563:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:16562:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoBlockAsnWrite': objmacro.c:16645:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'RemoveDescriptorActionAsnRead': objmacro.c:16743:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:16742:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'AutodefActionAsnRead': objmacro.c:16908:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FixPubCapsActionAsnRead': objmacro.c:17070:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:17069:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SortFieldsActionAsnRead': objmacro.c:17272:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:17271:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FixCapsActionFree': objmacro.c:17412:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FixCapsActionAsnRead': objmacro.c:17444:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FixFormatActionFree': objmacro.c:17608:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FixFormatActionAsnRead': objmacro.c:17637:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveDuplicateFeatureActionAsnRead': objmacro.c:17841:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:17840:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'GeneXrefTypeAsnRead': objmacro.c:18032:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:18031:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'XrefTypeFree': objmacro.c:18166:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'XrefTypeAsnRead': objmacro.c:18198:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveXrefsActionAsnRead': objmacro.c:18367:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:18366:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveXrefsActionAsnWrite': objmacro.c:18442:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'MakeGeneXrefActionAsnRead': objmacro.c:18535:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:18534:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'AuthorFixActionAsnRead': objmacro.c:18700:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:18699:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MacroActionChoiceFree': objmacro.c:18828:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'MacroActionChoiceAsnRead': objmacro.c:18908:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SearchFuncFree': objmacro.c:19277:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'SearchFuncAsnRead': objmacro.c:19315:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SimpleReplaceAsnRead': objmacro.c:19584:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:19583:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ReplaceFuncFree': objmacro.c:19720:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ReplaceFuncAsnRead': objmacro.c:19755:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ReplaceRuleAsnRead': objmacro.c:19935:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:19934:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SuspectRuleAsnRead': objmacro.c:20104:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:20103:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MacroActionChoiceAsnRead': objmacro.c:19084:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'FixFormatActionAsnRead': objmacro.c:17703:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'FixCapsActionAsnRead': objmacro.c:17507:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ParseSrcGeneralIdAsnRead': objmacro.c:12727:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ConstraintChoiceAsnRead': objmacro.c:9453:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'FieldTypeAsnRead': objmacro.c:8390:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'StructuredCommentFieldAsnRead': objmacro.c:6251:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'MolinfoFieldPairAsnRead': objmacro.c:5771:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'MolinfoFieldAsnRead': objmacro.c:4587:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'SourceQualValChoiceAsnRead': objmacro.c:4098:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'SourceQualChoiceAsnRead': objmacro.c:3727:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'LocationPosConstraintAsnRead': objmacro.c:1447:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'RnaFeatTypeAsnRead': objmacro.c:3008:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'PubFieldSpecialConstraintTypeAsnRead': objmacro.c:6945:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'SequenceConstraintMolTypeConstraintAsnRead': objmacro.c:8613:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'QuantityConstraintAsnRead': objmacro.c:8806:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'TextMarkerAsnRead': objmacro.c:9787:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'FieldPairTypeAsnRead': objmacro.c:10403:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ActionChoiceAsnRead': objmacro.c:12183:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ParseSrcOrgChoiceAsnRead': objmacro.c:12377:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ParseSrcAsnRead': objmacro.c:12957:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ParseDestAsnRead': objmacro.c:13349:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'LocationChoiceAsnRead': objmacro.c:13703:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ConvertFeatureDstOptionsAsnRead': objmacro.c:15117:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'LocationEditTypeAsnRead': objmacro.c:16212:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'SearchFuncAsnRead': objmacro.c:19420:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objent2.c objent2.c: In function 'Entrez2IdListAsnRead': objent2.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:86:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2BooleanExpAsnRead': objent2.c:276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2BooleanElementFree': objent2.c:414:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2BooleanElementAsnRead': objent2.c:455:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2LimitsAsnRead': objent2.c:664:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:663:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2BooleanTermAsnRead': objent2.c:841:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:840:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2RequestAsnRead': objent2.c:1037:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:1036:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'E2RequestFree': objent2.c:1198:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objent2.c: In function 'E2RequestAsnRead': objent2.c:1251:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2EvalBooleanAsnRead': objent2.c:1488:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:1487:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2TermQueryAsnRead': objent2.c:1664:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:1663:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2TermPosAsnRead': objent2.c:1842:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:1841:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2HierQueryAsnRead': objent2.c:2028:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:2027:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2GetLinksAsnRead': objent2.c:2215:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:2214:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2IdAsnRead': objent2.c:2409:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:2408:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2DtFilterAsnRead': objent2.c:2573:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:2572:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2ReplyAsnRead': objent2.c:2750:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:2749:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'E2ReplyFree': objent2.c:2922:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objent2.c: In function 'E2ReplyAsnRead': objent2.c:2978:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2InfoAsnRead': objent2.c:3224:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2BooleanReplyAsnRead': objent2.c:3395:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:3394:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2DocsumListAsnRead': objent2.c:3572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2TermListAsnRead': objent2.c:3733:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2HierNodeAsnRead': objent2.c:3905:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2LinkSetAsnRead': objent2.c:4104:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:4103:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2LinkCountListAsnRead': objent2.c:4280:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2DbInfoAsnRead': objent2.c:4446:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2FieldInfoAsnRead': objent2.c:4685:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:4684:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2LinkInfoAsnRead': objent2.c:4928:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:4927:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2DocsumFieldInfoAsnRead': objent2.c:5126:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:5125:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2DocsumAsnRead': objent2.c:5301:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2DocsumDataAsnRead': objent2.c:5463:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:5462:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2TermAsnRead': objent2.c:5629:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:5628:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2LinkCountAsnRead': objent2.c:5811:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:5810:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2BooleanElementAsnRead': objent2.c:522:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objent2.c: In function 'E2ReplyAsnRead': objent2.c:3062:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ent2api.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF pmfapi.c pmfapi.c: In function 'PubMedSynchronousQuery': pmfapi.c:1155:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'PubSeqSynchronousQuery': pmfapi.c:1303:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'PubSeqSynchronousQueryTI': pmfapi.c:1390:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'PubSeqSynchronousQuerySRA': pmfapi.c:1475:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'GiRevHistSynchronousQuery': pmfapi.c:1552:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'GiAccVerSynchronousQuery': pmfapi.c:1604:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'AccnRevHistSynchronousQuery': pmfapi.c:1655:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'GiSeqIdSetSynchronousQuery': pmfapi.c:1706:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'AccnListSynchronousQuery': pmfapi.c:1756:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objtax3.c objtax3.c: In function 'Taxon3RequestAsnRead': objtax3.c:86:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'T3RequestFree': objtax3.c:200:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'SequenceOfIntAsnRead': objtax3.c:418:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'Taxon3ReplyAsnRead': objtax3.c:547:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'T3ReplyFree': objtax3.c:661:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'T3ErrorAsnRead': objtax3.c:872:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'T3DataAsnRead': objtax3.c:1071:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'Value_valueFree': objtax3.c:1252:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'T3StatusFlagsAsnRead': objtax3.c:1282:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'T3RefreshFlagsAsnRead': objtax3.c:1606:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] objtax3.c: In function 'T3ReplyAsnRead': objtax3.c:741:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objtax3.c: In function 'T3RequestAsnRead': objtax3.c:297:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objtax3.c: In function 'T3StatusFlagsAsnRead': objtax3.c:1420:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objtax3.c:1361:10: note: 'choice' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF tax3api.c tax3api.c: In function 'Tax3SynchronousQuery': tax3api.c:188:27: warning: variable 't3' set but not used [-Wunused-but-set-variable] tax3api.c: In function 'CheckSuggestedFixes': tax3api.c:753:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable] tax3api.c: In function 'TryNewSuggestedFixes': tax3api.c:865:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable] tax3api.c: In function 'GetSuggestedNamesFromRank': tax3api.c:1114:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable] tax3api.c: At top level: tax3api.c:297:13: warning: 'SaveTaxon3Request' defined but not used [-Wunused-function] tax3api.c:361:16: warning: 'HasMisspellingFlag' defined but not used [-Wunused-function] tax3api.c:616:28: warning: 'TaxFixItemOrigIsOk' defined but not used [-Wunused-function] tax3api.c:1886:16: warning: 'EndsWithSp' defined but not used [-Wunused-function] tax3api.c:2345:16: warning: 'StringIsExactMatchForOrgRef' defined but not used [-Wunused-function] tax3api.c:3003:13: warning: 'AddBioSourcesToChecklist' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objegkludge.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objentgene.c objentgene.c: In function 'EntrezgeneAsnRead': objentgene.c:103:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c: In function 'EntrezgeneSetAsnRead': objentgene.c:411:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c:408:12: warning: unused variable 'av' [-Wunused-variable] objentgene.c: In function 'EntrezgeneSetAsnWrite': objentgene.c:464:12: warning: unused variable 'av' [-Wunused-variable] objentgene.c: In function 'GeneTrackAsnRead': objentgene.c:545:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c: In function 'GeneCommentaryAsnRead': objentgene.c:764:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c: In function 'Method_methodFree': objentgene.c:1056:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objentgene.c: In function 'MapsAsnRead': objentgene.c:1087:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c:1086:12: warning: unused variable 'isError' [-Wunused-variable] objentgene.c: In function 'Method_methodAsnRead': objentgene.c:1167:12: warning: unused variable 'isError' [-Wunused-variable] objentgene.c: In function 'GeneSourceAsnRead': objentgene.c:1408:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c:1407:12: warning: unused variable 'isError' [-Wunused-variable] objentgene.c: In function 'XtraTermsAsnRead': objentgene.c:1622:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c:1621:12: warning: unused variable 'isError' [-Wunused-variable] objentgene.c: In function 'OtherSourceAsnRead': objentgene.c:1792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c:1791:12: warning: unused variable 'isError' [-Wunused-variable] objentgene.c: In function 'MapsAsnRead': objentgene.c:1219:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objentgene.c:1166:10: note: 'choice' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objmla2.c objmla2.c: In function 'Mla2RequestFree': objmla2.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmla2.c: In function 'Mla22RequestAsnRead': objmla2.c:96:12: warning: unused variable 'isError' [-Wunused-variable] objmla2.c: In function 'TitleMsg2AsnRead': objmla2.c:447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmla2.c:446:12: warning: unused variable 'isError' [-Wunused-variable] objmla2.c: In function 'TitleMsgList2AsnRead': objmla2.c:612:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmla2.c: In function 'Mla22RequestAsnRead': objmla2.c:249:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmla2.c: In function 'Mla2BackAsnRead': objmla2.c:902:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF mla2api.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF qblastapi.c qblastapi.c: In function 'SecondQBlastCallback': qblastapi.c:259:15: warning: variable 'waiting' set but not used [-Wunused-but-set-variable] qblastapi.c: In function 'BLASTGetSeqAnnotByRIDEx': qblastapi.c:823:18: warning: variable 'status' set but not used [-Wunused-but-set-variable] qblastapi.c: In function 'BLASTGetQueryBioseqByRIDEx': qblastapi.c:868:18: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF vecscnapi.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objmim.c objmim.c: In function 'MimSetAsnRead': objmim.c:86:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c: In function 'MimDateAsnRead': objmim.c:248:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:247:12: warning: unused variable 'isError' [-Wunused-variable] objmim.c: In function 'MimEntryAsnRead': objmim.c:447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c: In function 'MimCitAsnRead': objmim.c:907:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:906:12: warning: unused variable 'isError' [-Wunused-variable] objmim.c: In function 'MimTextAsnRead': objmim.c:1093:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:1092:12: warning: unused variable 'isError' [-Wunused-variable] objmim.c: In function 'MimEditItemAsnRead': objmim.c:1272:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:1271:12: warning: unused variable 'isError' [-Wunused-variable] objmim.c: In function 'MimAllelicVariantAsnRead': objmim.c:1443:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c: In function 'MimIndexTermAsnRead': objmim.c:1634:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c: In function 'MimReferenceAsnRead': objmim.c:1812:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c: In function 'MimLinkAsnRead': objmim.c:2187:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:2186:12: warning: unused variable 'isError' [-Wunused-variable] objmim.c: In function 'MimAuthorAsnRead': objmim.c:2360:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:2359:12: warning: unused variable 'isError' [-Wunused-variable] objmim.c: In function 'MimPageAsnRead': objmim.c:2525:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:2524:12: warning: unused variable 'isError' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objvalid.c objvalid.c: In function 'FieldRuleAsnRead': objvalid.c:88:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objvalid.c:87:12: warning: unused variable 'isError' [-Wunused-variable] objvalid.c: In function 'FieldSetAsnRead': objvalid.c:256:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objvalid.c:253:12: warning: unused variable 'av' [-Wunused-variable] objvalid.c: In function 'FieldSetAsnWrite': objvalid.c:309:12: warning: unused variable 'av' [-Wunused-variable] objvalid.c: In function 'DependentFieldRuleAsnRead': objvalid.c:389:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objvalid.c:388:12: warning: unused variable 'isError' [-Wunused-variable] objvalid.c: In function 'DependentFieldSetAsnRead': objvalid.c:563:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objvalid.c:560:12: warning: unused variable 'av' [-Wunused-variable] objvalid.c: In function 'DependentFieldSetAsnWrite': objvalid.c:616:12: warning: unused variable 'av' [-Wunused-variable] objvalid.c: In function 'CommentRuleAsnRead': objvalid.c:698:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objvalid.c:697:12: warning: unused variable 'isError' [-Wunused-variable] objvalid.c: In function 'CommentSetAsnRead': objvalid.c:888:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objvalid.c:885:12: warning: unused variable 'av' [-Wunused-variable] objvalid.c: In function 'CommentSetAsnWrite': objvalid.c:941:12: warning: unused variable 'av' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF mimapi.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF cddapi.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF seqport.c seqport.c: In function 'productLoc_to_locationLoc': seqport.c:4153:13: warning: variable 'is_cdregion' set but not used [-Wunused-but-set-variable] seqport.c: In function 'NaLocFromNaInterval': seqport.c:4483:8: warning: variable 'p_end_pos' set but not used [-Wunused-but-set-variable] seqport.c: In function 'dnaLoc_to_aaLoc': seqport.c:4599:18: warning: variable 'cds_right' set but not used [-Wunused-but-set-variable] seqport.c:4599:8: warning: variable 'cds_left' set but not used [-Wunused-but-set-variable] seqport.c: In function 'DeltaRevComp': seqport.c:5281:21: warning: variable 'dspnext' set but not used [-Wunused-but-set-variable] seqport.c: In function 'SeqSearchEnterNucWord': seqport.c:6822:18: warning: variable 'patLen' set but not used [-Wunused-but-set-variable] seqport.c: In function 'ProtSearchEnterProtWord': seqport.c:7696:18: warning: variable 'patLen' set but not used [-Wunused-but-set-variable] seqport.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF sequtil.c sequtil.c: In function 'GetPointsForLeftAndRightOffsets': sequtil.c:7837:11: warning: variable 'first_strand' set but not used [-Wunused-but-set-variable] sequtil.c: In function 'SeqPointWriteEx': sequtil.c:8364:15: warning: variable 'fuzzlen' set but not used [-Wunused-but-set-variable] sequtil.c: In function 'TaxNameFromCommon': sequtil.c:8520:5: warning: missing braces around initializer [-Wmissing-braces] sequtil.c:8520:5: warning: (near initialization for 'taxcommon[0]') [-Wmissing-braces] sequtil.c: In function 'GetBestScoreAndEvalueFromScorePtr': sequtil.c:9342:48: warning: variable 'sum_set' set but not used [-Wunused-but-set-variable] sequtil.c: In function 'SeqIdFromAccessionEx': sequtil.c:9942:38: warning: variable 'sip2' set but not used [-Wunused-but-set-variable] sequtil.c: In function 'BSCompressDNAOld': sequtil.c:1521:15: warning: 'byte_from' may be used uninitialized in this function [-Wuninitialized] sequtil.c: In function 'GenericCompressDNAEx': sequtil.c:1328:15: warning: 'byte_from' may be used uninitialized in this function [-Wuninitialized] sequtil.c: In function 'BSConvertSeq': sequtil.c:924:15: warning: 'byte_from' may be used uninitialized in this function [-Wuninitialized] sequtil.c: In function 'SeqLocCoverage': sequtil.c:6800:23: warning: 'sip' may be used uninitialized in this function [-Wuninitialized] sequtil.c: In function 'GetThePointForOffsetEx': sequtil.c:7797:14: warning: 'last_strand' may be used uninitialized in this function [-Wuninitialized] sequtil.c:7778:14: warning: 'first_strand' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF prtutil.c prtutil.c: In function 'StdFormatPrint': prtutil.c:1422:10: warning: unused variable 'ptr' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF simple.c In file included from simple.c:69:0: ../include/all.h:7035:0: warning: "RNA_QUAL" redefined [enabled by default] ../include/all.h:5608:0: note: this is the location of the previous definition simple.c: In function 'SimpleSeqAsnRead': simple.c:212:15: warning: 'b' may be used uninitialized in this function [-Wuninitialized] simple.c:170:17: note: 'b' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF tofasta.c tofasta.c: In function 'DoSpecialDefline': tofasta.c:1244:22: warning: variable 'gene' set but not used [-Wunused-but-set-variable] tofasta.c: At top level: tofasta.c:2786:16: warning: 'get_descr_on_top' defined but not used [-Wunused-function] tofasta.c:2815:16: warning: 'get_descr' defined but not used [-Wunused-function] tofasta.c:2910:19: warning: 'IndexedGatherDescrOnBioseq' defined but not used [-Wunused-function] tofasta.c:3073:19: warning: 'GetCDSProtUnindexed' defined but not used [-Wunused-function] tofasta.c:3159:19: warning: 'GatherSeqFeatProt' defined but not used [-Wunused-function] tofasta.c:3193:19: warning: 'GatherGenesForCDS' defined but not used [-Wunused-function] tofasta.c: In function 'FastaToSeqEntryInternalExEx': tofasta.c:2450:14: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tofasta.c:2475:18: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tofasta.c: In function 'FastaReadSequenceInternalEx': tofasta.c:2190:43: warning: 'mask_to' may be used uninitialized in this function [-Wuninitialized] tofasta.c: In function 'FastaToSeqEntryInternalExEx': tofasta.c:2566:19: warning: 'fd' may be used uninitialized in this function [-Wuninitialized] tofasta.c:2478:29: warning: 'firstchar' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF tofile.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF tomedlin.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF valid.c valid.c: In function 'Valid1GatherProc': valid.c:1998:22: warning: variable 'sc_valid' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateSeqIdCase': valid.c:3077:21: warning: variable 'gcp' set but not used [-Wunused-but-set-variable] valid.c: In function 'CountAdjacentProc': valid.c:5778:21: warning: variable 'gcp' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateBioseqInst': valid.c:6164:19: warning: variable 'tech' set but not used [-Wunused-but-set-variable] valid.c:6108:19: warning: variable 'prot' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateBioSource': valid.c:13070:19: warning: variable 'id' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateSeqDescrCommon': valid.c:14010:19: warning: variable 'pdp' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateBioseqContextIndexed': valid.c:16950:3: warning: suggest parentheses around '&&' within '||' [-Wparentheses] valid.c:16334:47: warning: variable 'utr3gene' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateBarcodeIndexNumber': valid.c:17823:21: warning: variable 'bin_len' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateBioseqContext': valid.c:17931:19: warning: variable 'taxname' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateRptUnit': valid.c:18964:32: warning: variable 'found' set but not used [-Wunused-but-set-variable] valid.c: In function 'CheckForCommonCDSProduct': valid.c:20771:19: warning: variable 'is_nw' set but not used [-Wunused-but-set-variable] valid.c:20768:19: warning: variable 'is_nc' set but not used [-Wunused-but-set-variable] valid.c: In function 'CheckForIllegalDbxref': valid.c:21144:16: warning: variable 'id' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateAnticodon': valid.c:21825:53: warning: variable 'circular' set but not used [-Wunused-but-set-variable] valid.c:21824:19: warning: variable 'retval' set but not used [-Wunused-but-set-variable] valid.c: In function 'IsGeneXrefRedundant': valid.c:23062:17: warning: variable 'count' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateSeqFeat': valid.c:23198:19: warning: variable 'count' set but not used [-Wunused-but-set-variable] valid.c:23176:19: warning: variable 'pdp' set but not used [-Wunused-but-set-variable] valid.c: In function 'SpliceCheckEx': valid.c:25816:19: warning: variable 'sep' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateSeqLoc': valid.c:26241:19: warning: variable 'retval' set but not used [-Wunused-but-set-variable] valid.c:26240:24: warning: variable 'prev' set but not used [-Wunused-but-set-variable] valid.c: At top level: valid.c:1392:16: warning: 'IsNotUnclassifiedExcept' defined but not used [-Wunused-function] valid.c:3756:13: warning: 'FindLongIdsThatCollideWhenTruncated' defined but not used [-Wunused-function] valid.c:5072:13: warning: 'CheckMutSetSources' defined but not used [-Wunused-function] valid.c:6035:13: warning: 'ReportLongSeqId' defined but not used [-Wunused-function] valid.c:11552:16: warning: 'LatLonIsValid' defined but not used [-Wunused-function] valid.c:12349:16: warning: 'LatLonInRange' defined but not used [-Wunused-function] valid.c:12446:16: warning: 'CountryIsClosestToLatLon' defined but not used [-Wunused-function] valid.c:17466:19: warning: 'ListFeaturesContainedInLocation' defined but not used [-Wunused-function] valid.c:17516:28: warning: 'MultiGeneOverlapFree' defined but not used [-Wunused-function] valid.c:22750:16: warning: 'CouldExtendPartial' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF valapi.c valapi.c: In function 'DoesStringMatchExpression': valapi.c:330:15: warning: variable 'errstr' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF alignmgr.c alignmgr.c: In function 'AlnMgrIndexParentSA': alignmgr.c:1603:19: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] alignmgr.c: In function 'AlnMgrGetNthBlockRange': alignmgr.c:4180:21: warning: variable 'amaip' set but not used [-Wunused-but-set-variable] alignmgr.c: In function 'AlnMgrMakeFakeMultipleEx': alignmgr.c:5155:21: warning: variable 'nogap' set but not used [-Wunused-but-set-variable] alignmgr.c: In function 'AlnMgrMapBioseqToBioseq': alignmgr.c:10838:19: warning: variable 'gap' set but not used [-Wunused-but-set-variable] alignmgr.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] alignmgr.c:5403:13: warning: 'AlnMgrMergeNeighbors' defined but not used [-Wunused-function] alignmgr.c:10570:16: warning: 'am_merge_after_edit' defined but not used [-Wunused-function] alignmgr.c:6121:18: warning: 'AlnMgrConstructOverlaps' defined but not used [-Wunused-function] alignmgr.c:6648:16: warning: 'AlnMgrJaggedIndex' defined but not used [-Wunused-function] alignmgr.c: In function 'AlnMgrUnpackSeqAlign': alignmgr.c:1145:33: warning: 'sap_segs_prev' may be used uninitialized in this function [-Wuninitialized] alignmgr.c: In function 'AlnMgrPropagateSeqIdsBySapList': alignmgr.c:1751:23: warning: 'sip' may be used uninitialized in this function [-Wuninitialized] alignmgr.c: In function 'AlnMgrDeleteNthRow': alignmgr.c:9807:31: warning: 'abp_prev' may be used uninitialized in this function [-Wuninitialized] alignmgr.c: In function 'AlnMgrGetNthSeqRangeInSA': alignmgr.c:4113:19: warning: 'tmp_end' may be used uninitialized in this function [-Wuninitialized] alignmgr.c:4111:20: warning: 'tmp_beg' may be used uninitialized in this function [-Wuninitialized] alignmgr.c: In function 'am_is_consistent': alignmgr.c:10112:43: warning: 'n' may be used uninitialized in this function [-Wuninitialized] alignmgr.c: In function 'AlnMgrGetSubAlign': alignmgr.c:9095:15: warning: 'salp' may be used uninitialized in this function [-Wuninitialized] alignmgr.c: In function 'AlnMgrMakeMultByIntersectOnMaster': alignmgr.c:5827:30: warning: 'sip_tmp' may be used uninitialized in this function [-Wuninitialized] alignmgr.c:5551:17: note: 'sip_tmp' was declared here alignmgr.c:5879:25: warning: 'sip_tmp' may be used uninitialized in this function [-Wuninitialized] alignmgr.c:5844:18: note: 'sip_tmp' was declared here alignmgr.c:5863:11: warning: 'sip_head' may be used uninitialized in this function [-Wuninitialized] alignmgr.c:5843:18: note: 'sip_head' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF aliparse.c aliparse.c: In function 's_IsInterleaved': aliparse.c:930:3: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aliparse.c:823:20: warning: variable 'isMaybe' set but not used [-Wunused-but-set-variable] aliparse.c: In function 's_ProcessInterId': aliparse.c:1000:15: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable] aliparse.c: In function 's_ProcessInterSeq': aliparse.c:1090:15: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable] aliparse.c: In function 's_AnalyzeInterleaved': aliparse.c:1193:8: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aliparse.c: In function 's_ProcessContigId': aliparse.c:1385:18: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable] aliparse.c: In function 's_ProcessContigSeq': aliparse.c:1476:18: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable] aliparse.c: In function 's_AnalyzeContiguous': aliparse.c:1603:8: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aliparse.c: In function 's_CheckContext': aliparse.c:2151:5: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aliparse.c:2131:20: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable] aliparse.c: In function 'PrintOutMultAlign': aliparse.c:3161:10: warning: statement with no effect [-Wunused-value] aliparse.c: In function 'ALI_ConvertToNCBIData': aliparse.c:3227:17: warning: variable 'sdp' set but not used [-Wunused-but-set-variable] aliparse.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] aliparse.c:449:13: warning: 's_FreeRowList' defined but not used [-Wunused-function] aliparse.c:57:18: warning: 's_SegCompare' declared 'static' but never defined [-Wunused-function] aliparse.c:3130:13: warning: 'PrintOutMultAlign' defined but not used [-Wunused-function] aliparse.c:3186:13: warning: 'PrintOutSegs' defined but not used [-Wunused-function] aliparse.c: In function 's_GetRowIdString': aliparse.c:543:20: warning: 'newIdStr' may be used uninitialized in this function [-Wuninitialized] aliparse.c: In function 's_ProcessMaybes': aliparse.c:696:21: warning: 'lastSeqPart' may be used uninitialized in this function [-Wuninitialized] aliparse.c:655:18: warning: 'currentIdStr' may be used uninitialized in this function [-Wuninitialized] aliparse.c: In function 'Ali_Read': aliparse.c:1355:14: warning: 'previousLength' may be used uninitialized in this function [-Wuninitialized] aliparse.c:1154:20: note: 'previousLength' was declared here aliparse.c:930:14: warning: 'seqLinePtr' may be used uninitialized in this function [-Wuninitialized] aliparse.c:820:20: note: 'seqLinePtr' was declared here aliparse.c: In function 'ALI_ConvertToNCBIData': aliparse.c:3276:26: warning: 'sep_new' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF aliread.c ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF alignval.c alignval.c: In function 'ValidateSeqlengthInDenseSeg': alignval.c:1214:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] alignval.c: In function 'PercentStringMatch': alignval.c:1495:32: warning: variable 'max_len' set but not used [-Wunused-but-set-variable] alignval.c: In function 'CheckAlnSeqLens': alignval.c:1893:12: warning: variable 'aln_len' set but not used [-Wunused-but-set-variable] alignval.c: In function 'ValidateSeqAlign': alignval.c:1991:16: warning: variable 'ans' set but not used [-Wunused-but-set-variable] alignval.c: In function 'GetAlignmentColumnPercentIdentities': alignval.c:2371:14: warning: variable 'num_match' set but not used [-Wunused-but-set-variable] alignval.c: In function 'WeightedAlignmentPercentIdentity': alignval.c:2681:14: warning: variable 'num_match' set but not used [-Wunused-but-set-variable] alignval.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] alignval.c:568:13: warning: 'delete_bioseqs' defined but not used [-Wunused-function] alignval.c:1476:16: warning: 'IsSipContainedInStdseg' defined but not used [-Wunused-function] alignval.c:1891:13: warning: 'CheckAlnSeqLens' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF sqnutil1.c sqnutil1.c: In function 'GeneExtendFunc': sqnutil1.c:2304:18: warning: variable 'grp' set but not used [-Wunused-but-set-variable] sqnutil1.c: In function 'ParseAnticodon': sqnutil1.c:3688:14: warning: variable 'strand' set but not used [-Wunused-but-set-variable] sqnutil1.c: In function 'ParseCodeBreak': sqnutil1.c:3808:17: warning: variable 'strand' set but not used [-Wunused-but-set-variable] sqnutil1.c: In function 'CleanOrgModListEx': sqnutil1.c:5924:19: warning: suggest parentheses around '&&' within '||' [-Wparentheses] sqnutil1.c: In function 'CleanUpPubdescAuthors': sqnutil1.c:8857:20: warning: variable 'prev' set but not used [-Wunused-but-set-variable] sqnutil1.c: In function 'RemoveUnnecessaryGeneXrefs': sqnutil1.c:13209:24: warning: variable 'count' set but not used [-Wunused-but-set-variable] sqnutil1.c: In function 'ResynchCDSPartials': sqnutil1.c:13374:9: warning: too many arguments for format [-Wformat-extra-args] sqnutil1.c: In function 'LinkTwoFeatures': sqnutil1.c:17154:25: warning: variable 'prev_xref' set but not used [-Wunused-but-set-variable] sqnutil1.c: In function 'RemoveBadCodonRecognizedCallback': sqnutil1.c:17700:13: warning: variable 'rcodon' set but not used [-Wunused-but-set-variable] sqnutil1.c: At top level: sqnutil1.c:2299:16: warning: 'GeneExtendFunc' defined but not used [-Wunused-function] sqnutil1.c:4992:13: warning: 'CleanupConsSplice' defined but not used [-Wunused-function] sqnutil1.c:7275:16: warning: 'IsStringSingleToken' defined but not used [-Wunused-function] sqnutil1.c:9789:13: warning: 'SortGoTermsSfp' defined but not used [-Wunused-function] sqnutil1.c:9903:16: warning: 'CleanUpSgml' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF sqnutil2.c sqnutil2.c: In function 'FindResidueByName': sqnutil2.c:4946:11: warning: variable 'last' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'ReadFeatureTableEx': sqnutil2.c:6854:18: warning: variable 'isnote' set but not used [-Wunused-but-set-variable] sqnutil2.c:6846:18: warning: variable 'endsinspace' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'SeqEntryCopyReplace': sqnutil2.c:8838:8: warning: variable 'type' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'StreamingReadBioseq': sqnutil2.c:9663:10: warning: variable 'level' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'StreamAsnForDescriptors': sqnutil2.c:9896:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] sqnutil2.c: In function 'StreamingReadWriteSeqSubmit': sqnutil2.c:10276:1: warning: label 'ret' defined but not used [-Wunused-label] sqnutil2.c: In function 'WriteAsnWithReplacedDescriptors': sqnutil2.c:10315:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] sqnutil2.c: In function 'ReadFeatureTableFile': sqnutil2.c:11265:18: warning: variable 'begin' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'ReadFastaOnly': sqnutil2.c:11379:18: warning: variable 'seqid' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'ReadDeltaFastaWithEmptyDefline': sqnutil2.c:11910:29: warning: variable 'seqid' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'IsStringInSpanInList': sqnutil2.c:16839:11: warning: variable 'str_val' set but not used [-Wunused-but-set-variable] sqnutil2.c:16837:27: warning: variable 'suffix_len' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'CreateStructuredCommentsFromFile': sqnutil2.c:18681:35: warning: variable 'vnp_h' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'AlignmentIntervalToString': sqnutil2.c:19045:14: warning: variable 'target_strand' set but not used [-Wunused-but-set-variable] sqnutil2.c:19044:14: warning: variable 'seq_len' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'ReportExonLocationChanges': sqnutil2.c:20011:9: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'Nlm_VoidPtr' [-Wformat] sqnutil2.c: In function 'AdjustForConsensusSpliceCallback': sqnutil2.c:20025:33: warning: variable 'partial5_last' set but not used [-Wunused-but-set-variable] sqnutil2.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] sqnutil2.c:4429:16: warning: 'IsNonSeqChar' defined but not used [-Wunused-function] sqnutil2.c:7905:16: warning: 'DoesSeqEntryAccessionMatchList' defined but not used [-Wunused-function] sqnutil2.c:15671:13: warning: 'RevCompFeatsOnBioseq' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF sqnutil3.c sqnutil3.c: In function 'BspLinkCDSmRNAbyOverlap': sqnutil3.c:487:22: warning: variable 'count' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'CautiousSeqEntryCleanup': sqnutil3.c:2226:16: warning: variable 'taxserver' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'ConvertSegSetsToDeltaSequences': sqnutil3.c:3331:17: warning: variable 'bsp' set but not used [-Wunused-but-set-variable] sqnutil3.c:3325:26: warning: variable 'prev_sep' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'MakeSequinDataFromAlignmentEx': sqnutil3.c:5078:32: warning: variable 'num_sets' set but not used [-Wunused-but-set-variable] sqnutil3.c:5072:26: warning: variable 'salp_last' set but not used [-Wunused-but-set-variable] sqnutil3.c:5072:15: warning: variable 'salp_list' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'GetCDSformRNA': sqnutil3.c:16739:8: warning: variable 'count' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'FindTextInFlatfileEx': sqnutil3.c:18470:19: warning: variable 'okay' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'CheckForTitleAuthorConflicts': sqnutil3.c:19556:14: warning: variable 'author_conflict' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'SortVnpByBspProjectId': sqnutil3.c:23311:31: warning: the comparison will always evaluate as 'true' for the address of 'vnp2' will never be NULL [-Waddress] sqnutil3.c: In function 'FindSmallGenomeSetProblems': sqnutil3.c:24465:36: warning: unused variable 'item_list' [-Wunused-variable] sqnutil3.c: In function 'GetDiscrepancyItemTextEx': sqnutil3.c:25550:21: warning: variable 'special_flag' set but not used [-Wunused-but-set-variable] sqnutil3.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] sqnutil3.c:7716:19: warning: 'FreePrefixCheckList' defined but not used [-Wunused-function] sqnutil3.c:7767:25: warning: 'InconsistentLocusTagPrefix' defined but not used [-Wunused-function] sqnutil3.c:7850:13: warning: 'GeneLocusTagDiscrepancyCallback' defined but not used [-Wunused-function] sqnutil3.c:8347:13: warning: 'ExtractVnpByStringSearch' defined but not used [-Wunused-function] sqnutil3.c:11103:16: warning: 'ContainsBracketsOrParentheses' defined but not used [-Wunused-function] sqnutil3.c:14198:24: warning: 'IntervalPairFree' defined but not used [-Wunused-function] sqnutil3.c:16258:24: warning: 'SortVnpByHaplotypeThenSequenceAllowNDiff' defined but not used [-Wunused-function] sqnutil3.c:17552:16: warning: 'FeatureCountHasNumFeats' defined but not used [-Wunused-function] sqnutil3.c:21309:13: warning: 'FindSuspectrRNAProductsCallback' defined but not used [-Wunused-function] sqnutil3.c:28435:13: warning: 'FindBadGPS' defined but not used [-Wunused-function] sqnutil3.c:28443:1: warning: 'BarcodeTestForSeqEntry' defined but not used [-Wunused-function] sqnutil3.c:30492:13: warning: 'TestLatLonFormatting' defined but not used [-Wunused-function] sqnutil3.c: In function 'FillInMissingTraces': sqnutil3.c:28963:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] sqnutil3.c: In function 'LinkCDSmRNAbyLabelAndLocationCallback': sqnutil3.c:850:23: warning: 'best_diff' may be used uninitialized in this function [-Wuninitialized] sqnutil3.c: In function 'ValidateInferenceQualifier': sqnutil3.c:5974:6: warning: 'rest' may be used uninitialized in this function [-Wuninitialized] sqnutil3.c:6019:13: warning: 'best' may be used uninitialized in this function [-Wuninitialized] sqnutil3.c: In function 'tRNASameStrandBioseqCallback': sqnutil3.c:13738:8: warning: 'strand' may be used uninitialized in this function [-Wuninitialized] sqnutil3.c: In function 'FindMismatchedComments': sqnutil3.c:22968:47: warning: 'sdp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF sqnutil4.c sqnutil4.c: In function 'ListClauses': sqnutil4.c:8166:43: warning: variable 'twobefore' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'SmashOneTallClause': sqnutil4.c:9470:20: warning: variable 'subclause_featlist' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'GetFeatureClauseForSeg': sqnutil4.c:10342:21: warning: variable 'start' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'ConvertProtToImpFunc': sqnutil4.c:13715:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'ExtraCDSCreationActions': sqnutil4.c:14594:28: warning: variable 'nsep' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'TESTDisplayQualCombo': sqnutil4.c:15703:20: warning: variable 'val' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'ConvertCDSToMatPeptideForOverlappingCDS': sqnutil4.c:17120:15: warning: variable 'crp' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'AddNewUniqueAnnotations': sqnutil4.c:17294:39: warning: variable 'sap_tmp_next' set but not used [-Wunused-but-set-variable] sqnutil4.c: At top level: ../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function] sqnutil4.c:4846:13: warning: 'CountFeatures' defined but not used [-Wunused-function] sqnutil4.c:9404:13: warning: 'RemoveFeats' defined but not used [-Wunused-function] sqnutil4.c:9568:13: warning: 'SmashTallClauses' defined but not used [-Wunused-function] sqnutil4.c:9599:19: warning: 'RemoveAllButLastCDS' defined but not used [-Wunused-function] sqnutil4.c:15535:16: warning: 'RemoveFieldFromUniqBioSrcGrpList' defined but not used [-Wunused-function] sqnutil4.c:15823:19: warning: 'ExpandOneComboListUsingAllPresentQuals' defined but not used [-Wunused-function] sqnutil4.c:15852:13: warning: 'TESTDisplayList' defined but not used [-Wunused-function] sqnutil4.c: In function 'ConvertProtToImpFunc': sqnutil4.c:13889:13: warning: 'topOfGbqList' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF subutil.c subutil.c: In function 'AddSeqLitToBioseq': subutil.c:769:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] subutil.c: In function 'AddReferenceToSegmentedEntry': subutil.c:1163:22: warning: variable 'prev' set but not used [-Wunused-but-set-variable] subutil.c: In function 'GetDNAConv': subutil.c:1624:8: warning: array subscript has type 'char' [-Wchar-subscripts] subutil.c: In function 'GetProteinConv': subutil.c:1646:8: warning: array subscript has type 'char' [-Wchar-subscripts] subutil.c: In function 'AddBasesToByteStore': subutil.c:1669:9: warning: array subscript has type 'char' [-Wchar-subscripts] subutil.c: In function 'AddAAsToByteStore': subutil.c:1700:9: warning: array subscript has type 'char' [-Wchar-subscripts] subutil.c: In function 'CitArtBuild': subutil.c:2683:21: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] subutil.c: At top level: subutil.c:3546:20: warning: 'TranslateCdRegionNew' defined but not used [-Wunused-function] subutil.c: In function 'AddGapToSegmentedEntry': subutil.c:1140:27: warning: 'bsp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF edutil.c edutil.c: In function 'SeqLocsToDeltaSeqs': edutil.c:787:14: warning: variable 'sip' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqLocCopyPart': edutil.c:2227:13: warning: variable 'done' set but not used [-Wunused-but-set-variable] edutil.c: In function 'IndexedSeqFeatsCopy': edutil.c:2384:16: warning: variable 'region' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqFeatsCopy': edutil.c:2488:16: warning: variable 'region' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqLocInsert': edutil.c:3670:10: warning: variable 'diff' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqEdRecreateDeletedFeats': edutil.c:4196:19: warning: variable 'sfp' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqEdSeqLocInsert': edutil.c:4496:8: warning: variable 'diff' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqEdSeqLocDelete': edutil.c:5053:10: warning: variable 'diff' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqEdInsertAdjustFeat': edutil.c:5284:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] edutil.c: In function 'SeqEdDeleteFromBsp': edutil.c:6469:11: warning: suggest parentheses around '&&' within '||' [-Wparentheses] edutil.c:6532:11: warning: suggest parentheses around '&&' within '||' [-Wparentheses] edutil.c:6421:21: warning: variable 'merge_mode' set but not used [-Wunused-but-set-variable] edutil.c:6412:21: warning: variable 'feats_altered' set but not used [-Wunused-but-set-variable] edutil.c: In function 'BioseqCopyEx': edutil.c:2136:25: warning: 'head' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF asn2ff1.c asn2ff1.c: In function 'asn2ff_print': asn2ff1.c:289:17: warning: unused variable 'dsp' [-Wunused-variable] asn2ff1.c: In function 'Asn2ffJobCreate': asn2ff1.c:351:18: warning: unused variable 'itemID' [-Wunused-variable] asn2ff1.c: In function 'SeqEntryToEntrez': asn2ff1.c:498:15: warning: unused variable 'slp' [-Wunused-variable] asn2ff1.c: In function 'SeqLocToFlat': asn2ff1.c:1518:19: warning: unused variable 'itemID' [-Wunused-variable] asn2ff1.c: In function 'asn2ff_setup': asn2ff1.c:1579:12: warning: variable 'bsp' set but not used [-Wunused-but-set-variable] asn2ff1.c: In function 'PrintStatusLine': asn2ff1.c:2197:15: warning: unused variable 'ptr' [-Wunused-variable] asn2ff1.c: In function 'asn2gb_setup': asn2ff1.c:2403:3: warning: suggest parentheses around '&&' within '||' [-Wparentheses] asn2ff1.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff1.c:816:19: warning: 'SeqEntryToLinkStrEx' defined but not used [-Wunused-function] asn2ff1.c:2171:16: warning: 'find_user_object' defined but not used [-Wunused-function] asn2ff1.c:2189:13: warning: 'PrintStatusLine' defined but not used [-Wunused-function] asn2ff1.c: In function 'asn2gp_setup': asn2ff1.c:2942:4: warning: 'feat_num' may be used uninitialized in this function [-Wuninitialized] asn2ff1.c: In function 'asn2embl_setup': asn2ff1.c:2754:7: warning: 'max' may be used uninitialized in this function [-Wuninitialized] asn2ff1.c: In function 'SeqEntryToGBFlatNoSeq': asn2ff1.c:1292:15: warning: 'rsult' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF asn2ff2.c asn2ff2.c: In function 'GetStrForBankit': asn2ff2.c:510:9: warning: unused variable 'i' [-Wunused-variable] asn2ff2.c: In function 'GetCommentByChoice': asn2ff2.c:761:34: warning: unused variable 'string' [-Wunused-variable] asn2ff2.c: In function 'GP_GetSeqDescrComms': asn2ff2.c:1155:10: warning: unused variable 'got_comment' [-Wunused-variable] asn2ff2.c: At top level: asn2ff2.c:1350:8: warning: return type defaults to 'int' [-Wreturn-type] asn2ff2.c: In function 'GetGibbsqCommentLength': asn2ff2.c:1592:7: warning: unused variable 'gibbsq' [-Wunused-variable] asn2ff2.c: In function 'GatherDescrByChoice': asn2ff2.c:1856:8: warning: variable 'bspID' set but not used [-Wunused-but-set-variable] asn2ff2.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff2.c:224:16: warning: 'has_comment' defined but not used [-Wunused-variable] asn2ff2.c:672:16: warning: 'GetEvidence' defined but not used [-Wunused-function] asn2ff2.c:1182:16: warning: 'GetSPBlock' defined but not used [-Wunused-function] asn2ff2.c: In function 'GetCommentByChoice': asn2ff2.c:821:8: warning: 'is_other' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF asn2ff3.c asn2ff3.c: In function 'PutGeneFirst': asn2ff3.c:1659:26: warning: unused variable 'qual_temp' [-Wunused-variable] asn2ff3.c:1658:10: warning: unused variable 'still_looking' [-Wunused-variable] asn2ff3.c: In function 'mRNAEvidenceComment': asn2ff3.c:1743:9: warning: unused variable 'Locus_id' [-Wunused-variable] asn2ff3.c: In function 'Add_gene_id': asn2ff3.c:3303:2: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'Nlm_VoidPtr' [-Wformat] asn2ff3.c: In function 'Add_trid': asn2ff3.c:3728:4: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] asn2ff3.c:3709:7: warning: unused variable 'gi' [-Wunused-variable] asn2ff3.c: In function 'AddPID': asn2ff3.c:3771:5: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] asn2ff3.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff3.c:3288:13: warning: 'Add_gene_id' defined but not used [-Wunused-function] asn2ff3.c: In function 'GettRNAaa': asn2ff3.c:2204:31: warning: 'seq_code' may be used uninitialized in this function [-Wuninitialized] asn2ff3.c: In function 'Add_dbxref.isra.0': asn2ff3.c:855:14: warning: 'val' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF asn2ff4.c asn2ff4.c: In function 'FlatLocPoint': asn2ff4.c:437:15: warning: variable 'order' set but not used [-Wunused-but-set-variable] asn2ff4.c: In function 'do_FlatLoc': asn2ff4.c:1122:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] asn2ff4.c: At top level: asn2ff4.c:1347:8: warning: return type defaults to 'int' [-Wreturn-type] asn2ff4.c: In function 'CreateImpFeatFromProt': asn2ff4.c:1659:14: warning: variable 'grp' set but not used [-Wunused-but-set-variable] asn2ff4.c: In function 'MatchNAGeneToFeat': asn2ff4.c:2196:17: warning: variable 'nsp' set but not used [-Wunused-but-set-variable] asn2ff4.c: In function 'MatchAAGeneToFeat': asn2ff4.c:2367:18: warning: variable 'nsp' set but not used [-Wunused-but-set-variable] asn2ff4.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff4.c: In function 'CheckNewSfpLoc.isra.0': asn2ff4.c:1767:16: warning: 'slp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF asn2ff5.c asn2ff5.c: In function 'format_cit_sub': asn2ff5.c:1023:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses] asn2ff5.c:926:41: warning: variable 'need_space' set but not used [-Wunused-but-set-variable] asn2ff5.c: In function 'format_thesis': asn2ff5.c:1213:20: warning: variable 'embl_format' set but not used [-Wunused-but-set-variable] asn2ff5.c: In function 'format_book': asn2ff5.c:1296:10: warning: variable 'embl_format' set but not used [-Wunused-but-set-variable] asn2ff5.c: In function 'format_jourarticle': asn2ff5.c:1680:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] asn2ff5.c: In function 'StripParanthesis': asn2ff5.c:2124:12: warning: value computed is not used [-Wunused-value] asn2ff5.c: In function 'PostARefErrMessage': asn2ff5.c:3005:20: warning: variable 'ignore_this' set but not used [-Wunused-but-set-variable] asn2ff5.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff5.c:188:26: warning: 'GetSubmitterName' declared 'static' but never defined [-Wunused-function] asn2ff5.c: In function 'CheckPubs': asn2ff5.c:2772:24: warning: 'status' may be used uninitialized in this function [-Wuninitialized] asn2ff5.c: In function 'FlatJournal': asn2ff5.c:2064:13: warning: 'temp' may be used uninitialized in this function [-Wuninitialized] asn2ff5.c:1946:23: note: 'temp' was declared here asn2ff5.c:1155:11: warning: 'afp' may be used uninitialized in this function [-Wuninitialized] asn2ff5.c:1051:11: note: 'afp' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF asn2ff6.c asn2ff6.c: In function 'AddGBQual': asn2ff6.c:1327:18: warning: variable 'note' set but not used [-Wunused-but-set-variable] asn2ff6.c: In function 'BioseqGetGBDivCodeEx': asn2ff6.c:1700:23: warning: variable 'diff' set but not used [-Wunused-but-set-variable] asn2ff6.c: In function 'GR_PrintPubs': asn2ff6.c:2297:41: warning: unused variable 'stop' [-Wunused-variable] asn2ff6.c:2297:32: warning: unused variable 'start' [-Wunused-variable] asn2ff6.c:2297:13: warning: variable 'pmid' set but not used [-Wunused-but-set-variable] asn2ff6.c:2296:10: warning: unused variable 'descr' [-Wunused-variable] asn2ff6.c: In function 'ValidateLocus': asn2ff6.c:2786:17: warning: variable 'base_locus_max' set but not used [-Wunused-but-set-variable] asn2ff6.c: In function 'ValidateOtherAccession': asn2ff6.c:2886:29: warning: unused variable 'FiveNum' [-Wunused-variable] asn2ff6.c:2886:10: warning: unused variable 'FirstLetter' [-Wunused-variable] asn2ff6.c: In function 'AddExtraAccessions': asn2ff6.c:3498:20: warning: variable 'ncbi' set but not used [-Wunused-but-set-variable] asn2ff6.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff6.c:2883:13: warning: 'ValidateOtherAccession' defined but not used [-Wunused-function] asn2ff6.c: In function 'ValidateLocus': asn2ff6.c:2866:33: warning: 'exp' may be used uninitialized in this function [-Wuninitialized] asn2ff6.c: In function 'MakeBaseLocusAwp': asn2ff6.c:3093:17: warning: 'num_of_digits' may be used uninitialized in this function [-Wuninitialized] asn2ff6.c: In function 'AddExtraAccessions': asn2ff6.c:3570:11: warning: 'si' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF asn2gnb1.c asn2gnb1.c: In function 'IsWholeWordSubstr': asn2gnb1.c:2092:19: warning: variable 'right' set but not used [-Wunused-but-set-variable] asn2gnb1.c: In function 'DoOneSection': asn2gnb1.c:2363:24: warning: variable 'iasp' set but not used [-Wunused-but-set-variable] asn2gnb1.c:2357:24: warning: variable 'bkmask' set but not used [-Wunused-but-set-variable] asn2gnb1.c: In function 'Count2Seg': asn2gnb1.c:3205:18: warning: variable 'to' set but not used [-Wunused-but-set-variable] asn2gnb1.c:3203:18: warning: variable 'parent' set but not used [-Wunused-but-set-variable] asn2gnb1.c: At top level: asn2gnb1.c:3482:3: warning: missing braces around initializer [-Wmissing-braces] asn2gnb1.c:3482:3: warning: (near initialization for 'flagTable[0].flags') [-Wmissing-braces] asn2gnb1.c: In function 'SeqIdWriteForTable': asn2gnb1.c:5380:13: warning: variable 'pdb' set but not used [-Wunused-but-set-variable] asn2gnb1.c:5379:40: warning: variable 'patent' set but not used [-Wunused-but-set-variable] asn2gnb1.c: In function 'DoImmediateFormat': asn2gnb1.c:6438:19: warning: comparison between 'enum ' and 'enum ' [-Wenum-compare] asn2gnb1.c:6417:20: warning: variable 'is_www' set but not used [-Wunused-but-set-variable] asn2gnb1.c: In function 'asn2gnbk_format': asn2gnb1.c:6559:19: warning: comparison between 'enum ' and 'enum ' [-Wenum-compare] asn2gnb1.c: In function 'asn2gnbk_cleanup': asn2gnb1.c:6605:21: warning: variable 'iasp' set but not used [-Wunused-but-set-variable] asn2gnb1.c: In function 'SeqEntryToGnbk': asn2gnb1.c:6791:22: warning: variable 'userdata' set but not used [-Wunused-but-set-variable] asn2gnb1.c:6786:22: warning: variable 'gbseq' set but not used [-Wunused-but-set-variable] asn2gnb1.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF asn2gnb2.c asn2gnb2.c: In function 's_LocusAddSuffix': asn2gnb2.c:200:11: warning: variable 'ch' set but not used [-Wunused-but-set-variable] asn2gnb2.c: In function 'AddLocusBlock': asn2gnb2.c:1284:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] asn2gnb2.c: In function 'AddDblinkBlock': asn2gnb2.c:2550:22: warning: variable 'parentID' set but not used [-Wunused-but-set-variable] asn2gnb2.c: In function 'GetRefsOnBioseq': asn2gnb2.c:5205:22: warning: variable 'strand' set but not used [-Wunused-but-set-variable] asn2gnb2.c:5202:22: warning: variable 'split' set but not used [-Wunused-but-set-variable] asn2gnb2.c:5196:22: warning: variable 'right' set but not used [-Wunused-but-set-variable] asn2gnb2.c:5190:22: warning: variable 'left' set but not used [-Wunused-but-set-variable] asn2gnb2.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF asn2gnb3.c asn2gnb3.c: In function 'GetStatusForRefTrack': asn2gnb3.c:503:22: warning: variable 'urf' set but not used [-Wunused-but-set-variable] asn2gnb3.c: In function 'GetSourcesOnBioseq': asn2gnb3.c:3861:22: warning: variable 'strand' set but not used [-Wunused-but-set-variable] asn2gnb3.c:3859:22: warning: variable 'start' set but not used [-Wunused-but-set-variable] asn2gnb3.c:3858:22: warning: variable 'split' set but not used [-Wunused-but-set-variable] asn2gnb3.c: In function 'GetFeatsOnCdsProduct': asn2gnb3.c:4717:22: warning: variable 'isRefSeq' set but not used [-Wunused-but-set-variable] asn2gnb3.c: In function 'GetRemoteFeatsOnCdsProduct': asn2gnb3.c:4865:20: warning: variable 'lastsfp' set but not used [-Wunused-but-set-variable] asn2gnb3.c:4864:20: warning: variable 'lastsap' set but not used [-Wunused-but-set-variable] asn2gnb3.c:4863:20: warning: variable 'lastright' set but not used [-Wunused-but-set-variable] asn2gnb3.c:4862:20: warning: variable 'lastleft' set but not used [-Wunused-but-set-variable] asn2gnb3.c:4861:20: warning: variable 'isRefSeq' set but not used [-Wunused-but-set-variable] asn2gnb3.c: In function 'GetFeatsOnBioseq': asn2gnb3.c:5086:22: warning: variable 'start' set but not used [-Wunused-but-set-variable] asn2gnb3.c:5059:22: warning: variable 'icp' set but not used [-Wunused-but-set-variable] asn2gnb3.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF asn2gnb4.c asn2gnb4.c: In function 'FormatFeatureBlockQuals': asn2gnb4.c:3630:50: warning: "/*" within comment [-Wcomment] asn2gnb4.c:3008:24: warning: variable 'split' set but not used [-Wunused-but-set-variable] asn2gnb4.c:2949:24: warning: variable 'at_end' set but not used [-Wunused-but-set-variable] asn2gnb4.c: In function 'FF_asn2gb_www_featkey': asn2gnb4.c:5194:16: warning: variable 'prefix' set but not used [-Wunused-but-set-variable] asn2gnb4.c: In function 'FormatFeatureBlockEx': asn2gnb4.c:6190:22: warning: variable 'split' set but not used [-Wunused-but-set-variable] asn2gnb4.c: In function 'DoImmediateRemoteFeatureFormat': asn2gnb4.c:8213:19: warning: comparison between 'enum ' and 'enum ' [-Wenum-compare] asn2gnb4.c: In function 'FormatFeatureQuals': asn2gnb4.c:8286:19: warning: comparison between 'enum ' and 'enum ' [-Wenum-compare] asn2gnb4.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] asn2gnb4.c: In function 'FormatFeatureBlockEx': asn2gnb4.c:7188:24: warning: 'sep' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF asn2gnb5.c asn2gnb5.c: In function 'FormatCitBookArt': asn2gnb5.c:1863:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] asn2gnb5.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF asn2gnb6.c asn2gnb6.c: In function 'FlatLocElement': asn2gnb6.c:2384:14: warning: suggest parentheses around '&&' within '||' [-Wparentheses] asn2gnb6.c: In function 'FormatContigBlock': asn2gnb6.c:5367:20: warning: variable 'dspnext' set but not used [-Wunused-but-set-variable] asn2gnb6.c: In function 'FormatSequenceBlock': asn2gnb6.c:5821:21: warning: variable 'iasp' set but not used [-Wunused-but-set-variable] asn2gnb6.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ftusrstr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF gbfeat.c gbfeat.c: In function 'CkLabelType': gbfeat.c:1530:4: warning: suggest parentheses around '&&' within '||' [-Wparentheses] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF gbftglob.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF gbparint.c gbparint.c: In function 'Nlm_gbparselex': gbparint.c:2128:24: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] gbparint.c: In function 'Nlm_gbparselex_ver': gbparint.c:2514:24: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF utilpars.c utilpars.c:113:8: warning: missing braces around initializer [-Wmissing-braces] utilpars.c:113:8: warning: (near initialization for 'ParFlat_AA_array[0]') [-Wmissing-braces] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF utilpub.c utilpub.c: In function 'FindCit': utilpub.c:998:24: warning: variable 'ifp' set but not used [-Wunused-but-set-variable] utilpub.c: In function 'ChangeCitQual': utilpub.c:1053:53: warning: variable 'pub' set but not used [-Wunused-but-set-variable] utilpub.c:1052:34: warning: variable 'descr' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ffprint.c ffprint.c: In function 'FFBSPrint': ffprint.c:347:19: warning: unused variable 'byte_sp' [-Wunused-variable] ffprint.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] ffprint.c:420:16: warning: 'ff_print_insert' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF wprint.c wprint.c: In function 'www_featkey': wprint.c:435:8: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Nlm_Int4' [-Wformat] wprint.c: In function 'www_muid': wprint.c:479:13: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Nlm_Int4' [-Wformat] wprint.c: In function 'LocPrintGenome': wprint.c:1696:14: warning: unused variable 'sep' [-Wunused-variable] wprint.c:1695:25: warning: unused variable 'b' [-Wunused-variable] wprint.c:1695:13: warning: unused variable 'bsp' [-Wunused-variable] wprint.c:1692:34: warning: unused variable 'temp' [-Wunused-variable] wprint.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] wprint.c:77:13: warning: 'link_pir' defined but not used [-Wunused-variable] wprint.c:79:13: warning: 'link_gdb_map' defined but not used [-Wunused-variable] wprint.c: In function 'www_xref': wprint.c:1376:7: warning: 'link' may be used uninitialized in this function [-Wuninitialized] wprint.c:1376:12: warning: 'prefix' may be used uninitialized in this function [-Wuninitialized] wprint.c: In function 'www_xref_button': wprint.c:1419:12: warning: 'prefix' may be used uninitialized in this function [-Wuninitialized] wprint.c:1419:7: warning: 'link' may be used uninitialized in this function [-Wuninitialized] wprint.c: In function 'PrintSPBlock': wprint.c:1443:24: warning: 's' may be used uninitialized in this function [-Wuninitialized] wprint.c:1601:13: warning: 'prefix' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF satutil.c satutil.c: In function 'CopyFeatureFromAlign': satutil.c:1011:10: warning: variable 'check_gap' set but not used [-Wunused-but-set-variable] satutil.c: At top level: satutil.c:168:16: warning: 'bk_map_one_location' defined but not used [-Wunused-function] satutil.c: In function 'CopyFeatureFromAlign': satutil.c:1329:13: warning: 'c_slp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF seqmgr.c seqmgr.c: In function 'SeqEntrySetScope': seqmgr.c:313:13: warning: variable 'found' set but not used [-Wunused-but-set-variable] seqmgr.c: In function 'ClearBioseqFindCache': seqmgr.c:899:14: warning: variable 'smp' set but not used [-Wunused-but-set-variable] seqmgr.c: In function 'SeqMgrGetExtraDataForOmdp': seqmgr.c:3736:14: warning: variable 'omp' set but not used [-Wunused-but-set-variable] seqmgr.c: In function 'CheckForTransSplice': seqmgr.c:5631:14: warning: variable 'prev' set but not used [-Wunused-but-set-variable] seqmgr.c: In function 'SeqEntryAsnOut': seqmgr.c:11599:41: warning: variable 'aopp_desc' set but not used [-Wunused-but-set-variable] seqmgr.c:11599:23: warning: variable 'aopp_feat' set but not used [-Wunused-but-set-variable] seqmgr.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] seqmgr.c: In function 'SeqMgrGetNextDescriptor': seqmgr.c:9488:56: warning: 'bssp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objmgr.c objmgr.c: In function 'ObjMgrDump': objmgr.c:2931:13: warning: format '%u' expects argument of type 'unsigned int', but argument 11 has type 'long unsigned int' [-Wformat] objmgr.c: In function 'ObjMgrSelectFunc2': objmgr.c:4031:22: warning: variable 'retval' set but not used [-Wunused-but-set-variable] objmgr.c: In function 'ObjMgrAlsoSelect': objmgr.c:4109:55: warning: 'ssp' may be used uninitialized in this function [-Wuninitialized] objmgr.c:4030:22: note: 'ssp' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF gather.c gather.c: In function 'AttachDataProc': gather.c:4825:30: warning: variable 'into_seqentry' set but not used [-Wunused-but-set-variable] gather.c: In function 'GatherSeqFeat': gather.c:1570:42: warning: 'newid' may be used uninitialized in this function [-Wuninitialized] gather.c:1530:56: warning: 'max_interval' may be used uninitialized in this function [-Wuninitialized] gather.c:1570:42: warning: 'offset' may be used uninitialized in this function [-Wuninitialized] gather.c:1531:40: warning: 'lrdp' may be used uninitialized in this function [-Wuninitialized] gather.c: In function 'gather_align_data': gather.c:2447:33: warning: 'master_loc' may be used uninitialized in this function [-Wuninitialized] gather.c:2436:70: warning: 'mag_val' may be used uninitialized in this function [-Wuninitialized] gather.c: In function 'GatherBioseqFunc': gather.c:3314:34: warning: 'tlen' may be used uninitialized in this function [-Wuninitialized] gather.c:3296:40: warning: 'trunc_r' may be used uninitialized in this function [-Wuninitialized] gather.c:3291:39: warning: 'trunc_l' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF accmmdbs.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF acccn3ds.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF lsqfetch.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF findrepl.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF codon.c codon.c: In function 'make_cds_paragraph': codon.c:262:7: warning: variable 'space_len' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF jzcoll.c jzcoll.c: In function 'load_default_matrix': jzcoll.c:99:4: warning: array subscript has type 'char' [-Wchar-subscripts] jzcoll.c:99:4: warning: array subscript has type 'char' [-Wchar-subscripts] jzcoll.c:101:3: warning: array subscript has type 'char' [-Wchar-subscripts] jzcoll.c:101:3: warning: array subscript has type 'char' [-Wchar-subscripts] jzcoll.c: In function 'GetUseThisGi': jzcoll.c:143:10: warning: unused variable 'retval' [-Wunused-variable] jzcoll.c: In function 'buffer_for_feature': jzcoll.c:514:7: warning: unused variable 'i' [-Wunused-variable] jzcoll.c: In function 'ProcessTextInsertion': jzcoll.c:878:7: warning: variable 'last_ins' set but not used [-Wunused-but-set-variable] jzcoll.c: In function 'satcollfunc': jzcoll.c:1723:12: warning: variable 'head' set but not used [-Wunused-but-set-variable] jzcoll.c:1721:8: warning: variable 'strand' set but not used [-Wunused-but-set-variable] jzcoll.c:1720:7: warning: variable 'current_pos' set but not used [-Wunused-but-set-variable] jzcoll.c:1714:12: warning: unused variable 'slp' [-Wunused-variable] jzcoll.c: In function 'collect_anpnode_with_option': jzcoll.c:3053:13: warning: unused variable 'prev' [-Wunused-variable] jzcoll.c: In function 'ck_seqfeat_extra': jzcoll.c:3414:10: warning: unused variable 'has_gb' [-Wunused-variable] jzcoll.c: In function 'load_open_close_sts_mark': jzcoll.c:4010:10: warning: variable 'collected' set but not used [-Wunused-but-set-variable] jzcoll.c: In function 'FeatNodeCompProc': jzcoll.c:4225:20: warning: variable 'gr2' set but not used [-Wunused-but-set-variable] jzcoll.c:4225:15: warning: variable 'gr1' set but not used [-Wunused-but-set-variable] jzcoll.c: At top level: jzcoll.c:1654:16: warning: 'collect_sequence_label' defined but not used [-Wunused-function] jzcoll.c:2316:16: warning: 'stop_collecting_alignment' defined but not used [-Wunused-function] jzcoll.c: In function 'load_text': jzcoll.c:421:39: warning: 'smtp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF jzmisc.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF maputil.c maputil.c: In function 'load_gene_list': maputil.c:690:8: warning: variable 'val' set but not used [-Wunused-but-set-variable] maputil.c: In function 'gmarkfunc': maputil.c:985:13: warning: variable 'syn' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF mconsist.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF macroapi.c macroapi.c: In function 'AdvancedStringCompare': macroapi.c:4376:23: warning: variable 'init_target_match_len' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'RemoveGBQualMatch': macroapi.c:6831:27: warning: variable 'does_match' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'SetNameInPrimerList': macroapi.c:10415:21: warning: variable 'prev_pp' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'SetSeqInPrimerList': macroapi.c:10436:21: warning: variable 'prev_pp' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'GetCitListsForSeqEntry': macroapi.c:15286:19: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] macroapi.c:15284:19: warning: variable 'okay' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'GetPubMLStatus': macroapi.c:17582:14: warning: variable 'csp' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'ApplyPartial5SetActionToSeqFeat': macroapi.c:24213:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'ApplyPartial3SetActionToSeqFeat': macroapi.c:24336:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'ApplyPartialBothSetActionToSeqFeat': macroapi.c:24403:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'GetObjectTableForTabTable': macroapi.c:31487:63: warning: variable 'last' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'CheckObjTableForExistingText': macroapi.c:32058:14: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] macroapi.c: At top level: macroapi.c:1173:16: warning: 'IsObjectAppropriateForFieldPair' defined but not used [-Wunused-function] macroapi.c:2743:13: warning: 'OriginFromOriginName' defined but not used [-Wunused-function] macroapi.c:4503:13: warning: 'TestAdvancedStringMatch' defined but not used [-Wunused-function] macroapi.c:5367:16: warning: 'DoesLocationMatchConstraint' defined but not used [-Wunused-function] macroapi.c:10122:16: warning: 'HasMultiplePrimerSets' defined but not used [-Wunused-function] macroapi.c:15475:13: warning: 'InitBatchExtraForAECRActionAndObjectList' defined but not used [-Wunused-function] macroapi.c:31242:16: warning: 'IsFieldTypeProteinDesc' defined but not used [-Wunused-function] macroapi.c:19948:13: warning: 'GetFieldsFromAECR' defined but not used [-Wunused-function] macroapi.c:25246:13: warning: 'GetDescriptorTypeFromDescriptorChoice' defined but not used [-Wunused-function] macroapi.c: In function 'GetFeatureListForProteinBioseq': macroapi.c:30372:10: warning: 'sfp' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'ConvertToBond': macroapi.c:23575:7: warning: 'slp' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'ConvertToSite': macroapi.c:23622:7: warning: 'slp' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'SetAuthorListFromString': macroapi.c:13924:30: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'CaptureRefBlockSerialNumbers': macroapi.c:15267:26: warning: 'ppr' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'SetFieldValueForObjectEx': macroapi.c:13255:29: warning: 'ipp' may be used uninitialized in this function [-Wuninitialized] macroapi.c:13202:21: note: 'ipp' was declared here macroapi.c:13228:29: warning: 'cpp' may be used uninitialized in this function [-Wuninitialized] macroapi.c:13200:21: note: 'cpp' was declared here macroapi.c: In function 'SetDBxrefForBioSource': macroapi.c:22272:12: warning: 'dbtag' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF salpedit.c salpedit.c: In function 'SeqAlignInsert': salpedit.c:162:12: warning: variable 'ssp' set but not used [-Wunused-but-set-variable] salpedit.c:161:22: warning: variable 'ddp' set but not used [-Wunused-but-set-variable] salpedit.c: At top level: salpedit.c:158:20: warning: 'SeqAlignInsert' defined but not used [-Wunused-function] salpedit.c:254:16: warning: 'is_gap_segment' defined but not used [-Wunused-function] salpedit.c:1169:20: warning: 'JZSeqAlignMerge' defined but not used [-Wunused-function] salpedit.c:1281:13: warning: 'attach_new_align' defined but not used [-Wunused-function] salpedit.c:1387:14: warning: 'has_too_much_overlap' defined but not used [-Wunused-function] salpedit.c:1422:16: warning: 'convert_ddp_to_array' defined but not used [-Wunused-function] salpedit.c:1479:16: warning: 'filter_this_seg' defined but not used [-Wunused-function] salpedit.c:1560:13: warning: 'filter_wrong_orientation' defined but not used [-Wunused-function] salpedit.c:1605:16: warning: 'is_overlap' defined but not used [-Wunused-function] salpedit.c:1665:16: warning: 'free_diag_in_list' defined but not used [-Wunused-function] salpedit.c:2653:16: warning: 'FigureAlignRange' defined but not used [-Wunused-function] salpedit.c:2835:13: warning: 'SeqAnnotWrite' defined but not used [-Wunused-function] salpedit.c:2939:20: warning: 'open_annot' defined but not used [-Wunused-function] salpedit.c:3836:13: warning: 'get_align_list_len' defined but not used [-Wunused-function] salpedit.c:3850:13: warning: 'save_output' defined but not used [-Wunused-function] salpedit.c:3937:13: warning: 'reverse_seqloc' defined but not used [-Wunused-function] salpedit.c:3968:18: warning: 'create_fake_bioseq' defined but not used [-Wunused-function] salpedit.c:4016:18: warning: 'dup_mul_locs' defined but not used [-Wunused-function] salpedit.c:4046:16: warning: 'second_seq_has_gap' defined but not used [-Wunused-function] salpedit.c:4073:17: warning: 'get_best_id' defined but not used [-Wunused-function] salpedit.c:4120:18: warning: 'build_slp_for_gcontig' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF salpstat.c salpstat.c: In function 'DenseSegStats': salpstat.c:310:3: warning: suggest parentheses around '&&' within '||' [-Wparentheses] salpstat.c: In function 'SeqAlignScoreFix': salpstat.c:162:20: warning: 'sp_last' may be used uninitialized in this function [-Wuninitialized] salpstat.c: In function 'DenseSegStats': salpstat.c:382:18: warning: 'spp_2' may be used uninitialized in this function [-Wuninitialized] salpstat.c:381:18: warning: 'spp_1' may be used uninitialized in this function [-Wuninitialized] salpstat.c: In function 'SeqAlignWindowScoreFN': salpstat.c:2038:45: warning: 'score' may be used uninitialized in this function [-Wuninitialized] salpstat.c:2020:34: warning: 'pos' may be used uninitialized in this function [-Wuninitialized] salpstat.c: In function 'SeqAlignWindowScore': salpstat.c:2142:16: warning: 'scoreptr' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF salpacc.c salpacc.c: In function 'SeqAlignStrand': salpacc.c:334:20: warning: unused variable 'this_strand' [-Wunused-variable] salpacc.c: In function 'SeqAlignStop': salpacc.c:561:13: warning: 'this_stop' may be used uninitialized in this function [-Wuninitialized] salpacc.c:495:17: warning: 'val' may be used uninitialized in this function [-Wuninitialized] salpacc.c: In function 'SeqAlignMolType': salpacc.c:626:7: warning: 'bsp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF salprop.c salprop.c: In function 'CopySeqLocFromSeqAlign': salprop.c:291:12: warning: variable 'check_gap' set but not used [-Wunused-but-set-variable] salprop.c: In function 'FeatListToProp': salprop.c:1336:20: warning: variable 'feat_itemID' set but not used [-Wunused-but-set-variable] salprop.c: At top level: ../include/salprop.h:50:16: warning: 'GBFeat' defined but not used [-Wunused-variable] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] salprop.c: In function 'ApplyNewSeqFeat': salprop.c:620:11: warning: 'stop' may be used uninitialized in this function [-Wuninitialized] salprop.c:514:17: note: 'stop' was declared here salprop.c:727:13: warning: 'sfp' may be used uninitialized in this function [-Wuninitialized] salprop.c:674:17: note: 'sfp' was declared here salprop.c:734:23: warning: 'ppp.p5' may be used uninitialized in this function [-Wuninitialized] salprop.c:679:17: note: 'ppp.p5' was declared here salprop.c:679:17: warning: 'ppp.p3' may be used uninitialized in this function [-Wuninitialized] salprop.c:861:53: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized] salprop.c: In function 'MergeFunc': salprop.c:1299:22: warning: 'to_overlapp' may be used uninitialized in this function [-Wuninitialized] salprop.c:1299:22: warning: 'from_overlapp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF salsap.c salsap.c: In function 'DenseDiagToDenseSegFunc': salsap.c:2912:30: warning: variable 'slpstop2' set but not used [-Wunused-but-set-variable] salsap.c:2912:16: warning: variable 'slpstop1' set but not used [-Wunused-but-set-variable] salsap.c:2911:31: warning: variable 'slpstart2' set but not used [-Wunused-but-set-variable] salsap.c:2911:16: warning: variable 'slpstart1' set but not used [-Wunused-but-set-variable] salsap.c:2909:28: warning: variable 'start2' set but not used [-Wunused-but-set-variable] salsap.c:2909:16: warning: variable 'start1' set but not used [-Wunused-but-set-variable] salsap.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] salsap.c:2157:16: warning: 'AreDenseSegSegmentsValid' defined but not used [-Wunused-function] salsap.c:3631:13: warning: 'FindSeqAlignCallback' defined but not used [-Wunused-function] salsap.c: In function 'CleanStrandsSeqAlign': salsap.c:1605:32: warning: 'dim' may be used uninitialized in this function [-Wuninitialized] salsap.c:1669:39: warning: 'numseg' may be used uninitialized in this function [-Wuninitialized] salsap.c:1605:32: warning: 'startp' may be used uninitialized in this function [-Wuninitialized] salsap.c:1670:15: warning: 'lenp' may be used uninitialized in this function [-Wuninitialized] salsap.c:1646:25: warning: 'csp' may be used uninitialized in this function [-Wuninitialized] salsap.c:1648:25: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] salsap.c: In function 'LocalAlignToSeqAnnotDimn': salsap.c:1851:9: warning: 'the_lens' may be used uninitialized in this function [-Wuninitialized] salsap.c: In function 'multseqalign_from_pairseqalign': salsap.c:4498:22: warning: 'strandp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF salstruc.c salstruc.c: In function 'data_collect_arrange': salstruc.c:1338:22: warning: variable 'maxscroll' set but not used [-Wunused-but-set-variable] salstruc.c: In function 'ShowAlignmentText': salstruc.c:2203:29: warning: variable 'itemtype' set but not used [-Wunused-but-set-variable] salstruc.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] salstruc.c: In function 'next_notemptyline': salstruc.c:375:19: warning: 'str' may be used uninitialized in this function [-Wuninitialized] salstruc.c: In function 'data_collect_arrange': salstruc.c:918:65: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized] salstruc.c:872:19: note: 'entityID' was declared here salstruc.c:1093:44: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized] salstruc.c:1005:17: note: 'entityID' was declared here salstruc.c: In function 'ShowAlignmentText': salstruc.c:2194:19: warning: 'bspsip' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF salutil.c salutil.c: In function 'ReadBufferFromSap': salutil.c:128:24: warning: variable 'buffstart' set but not used [-Wunused-but-set-variable] salutil.c:127:15: warning: variable 'sumstart' set but not used [-Wunused-but-set-variable] salutil.c: In function 'IS_protSeqLoc': salutil.c:594:11: warning: variable 'seq' set but not used [-Wunused-but-set-variable] salutil.c: In function 'ReplaceSeqIdWithSeqId': salutil.c:1236:20: warning: variable 'oldscope' set but not used [-Wunused-but-set-variable] salutil.c: In function 'del_ssp_fromid': salutil.c:1722:24: warning: variable 'pressp' set but not used [-Wunused-but-set-variable] salutil.c: In function 'checkCDSselect_forprotein': salutil.c:2510:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] salutil.c: In function 'NoMoreSegGapForOneAlignment': salutil.c:3647:8: warning: implicit declaration of function 'AlnMgr2IndexSingleChildSeqAlign' [-Wimplicit-function-declaration] salutil.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] salutil.c: In function 'del_ssp_fromid': salutil.c:1750:30: warning: 'ssp' may be used uninitialized in this function [-Wuninitialized] salutil.c: In function 'sesp_to_slp': salutil.c:1974:12: warning: 'j' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF udvseq.c udvseq.c: In function 'UDV_EncodeIdxFeat': udvseq.c:448:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] udvseq.c: In function 'UDV_BigEncodeIdxFeat': udvseq.c:473:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blocks.c blocks.c: In function 'IndexBlocks': blocks.c:928:19: warning: operation on 'segp_align->to' may be undefined [-Wsequence-point] blocks.c: In function 'IndexNewBlocks': blocks.c:1084:19: warning: operation on 'segp_align->to' may be undefined [-Wsequence-point] blocks.c: In function 'GetBlockOrientation': blocks.c:2383:4: warning: 'orient' may be used uninitialized in this function [-Wuninitialized] blocks.c: In function 'SAMergeBlocks': blocks.c:2165:21: warning: 'tmp2' may be used uninitialized in this function [-Wuninitialized] blocks.c:1572:28: warning: 'tmp_head' may be used uninitialized in this function [-Wuninitialized] blocks.c:1509:27: warning: 'tmp_curr' may be used uninitialized in this function [-Wuninitialized] blocks.c:1709:27: warning: 'prev' may be used uninitialized in this function [-Wuninitialized] blocks.c:1670:34: warning: 'new_sabp1' may be used uninitialized in this function [-Wuninitialized] blocks.c: In function 'SASplitBlock': blocks.c:2796:25: warning: 'segp2_prev' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF pgppop.c pgppop.c:305:4: warning: missing braces around initializer [-Wmissing-braces] pgppop.c:305:4: warning: (near initialization for 'DDV_PaletteRGB[0]') [-Wmissing-braces] pgppop.c: In function 'DDV_WWW_get_CDS_minus': pgppop.c:574:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable] pgppop.c:572:5: warning: variable 'numivals2' set but not used [-Wunused-but-set-variable] pgppop.c: In function 'DDV_WWW_get_CDS_plus': pgppop.c:696:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable] pgppop.c: In function 'GetClrFromClrGlobal': pgppop.c:1322:4: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] pgppop.c:1322:4: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] pgppop.c: In function 'DDV_DisplayTopScale': pgppop.c:1545:7: warning: unused variable 'szBlank' [-Wunused-variable] pgppop.c: In function 'DDV_GetBLASTCompLine_1': pgppop.c:1981:21: warning: array subscript has type 'char' [-Wchar-subscripts] pgppop.c:1981:21: warning: array subscript has type 'char' [-Wchar-subscripts] pgppop.c: In function 'DDV_DisplayDefaultAlign': pgppop.c:3413:13: warning: unused variable 'sabp' [-Wunused-variable] pgppop.c: In function 'DDV_ShowSeqAlign': pgppop.c:3756:10: warning: unused variable 'szPopSetAuth' [-Wunused-variable] pgppop.c:3754:10: warning: unused variable 'szPopSetName' [-Wunused-variable] pgppop.c: In function 'DDV_PrintPopSetSummary': pgppop.c:3927:9: warning: variable 'bPairwise' set but not used [-Wunused-but-set-variable] pgppop.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] pgppop.c:559:13: warning: 'DDV_WWW_get_CDS_minus' defined but not used [-Wunused-function] pgppop.c:2086:13: warning: 'DDV_HideMaskedLetters' defined but not used [-Wunused-function] pgppop.c:2861:13: warning: 'DDV_GetGappedSequence' defined but not used [-Wunused-function] pgppop.c:2908:13: warning: 'DDV_PrintFastaGappedSequence' defined but not used [-Wunused-function] pgppop.c: In function 'DDV_PopDisplay2': pgppop.c:1242:23: warning: 'pgp2' may be used uninitialized in this function [-Wuninitialized] pgppop.c:1249:14: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized] pgppop.c: In function 'DDV_Print_Sequence': pgppop.c:1339:38: warning: 'idx' may be used uninitialized in this function [-Wuninitialized] pgppop.c:1304:9: note: 'idx' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF samutil.c samutil.c: In function 'DDE_FreeStack': samutil.c:1794:11: warning: operation on 'Index' may be undefined [-Wsequence-point] samutil.c: In function 'DDE_Add': samutil.c:1849:22: warning: operation on 'pStack->StackMin' may be undefined [-Wsequence-point] samutil.c:1860:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point] samutil.c: In function 'DDE_Prev': samutil.c:1924:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point] samutil.c: In function 'DDE_Next': samutil.c:1955:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point] samutil.c: In function 'DDE_ShowRow': samutil.c:2222:26: warning: variable 'NumRows' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_AddGapToEndOfAllRows': samutil.c:3344:41: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_RightAddNode': samutil.c:3945:33: warning: variable 'new_vnp' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_LeftMergeAndAddNodeList': samutil.c:3995:24: warning: variable 'RetVal2' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_RightMergeAndAddNodeList': samutil.c:4051:38: warning: variable 'RetVal2' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_ShiftRightBoundaryLeft1': samutil.c:4830:41: warning: variable 'Index' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_CreateArraysForDenseSeg': samutil.c:5266:22: warning: variable 'NumSegs' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_GetLastVNP': samutil.c:3381:3: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c: In function 'DDE_GetNumResidues': samutil.c:3404:13: warning: 'to' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ddvcolor.c ddvcolor.c: In function 'DDV_GetColor': ddvcolor.c:1422:10: warning: unused variable 'retval' [-Wunused-variable] ddvcolor.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF viewmgr.c ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] viewmgr.c:683:13: warning: 'ViewMgr_Swap' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ddvcreate.c ddvcreate.c:292:4: warning: missing braces around initializer [-Wmissing-braces] ddvcreate.c:292:4: warning: (near initialization for 'DDV_PaletteRGB[0]') [-Wmissing-braces] ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_1': ddvcreate.c:493:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_2': ddvcreate.c:529:21: warning: variable 'more' set but not used [-Wunused-but-set-variable] ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_EX2': ddvcreate.c:779:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ddvcreate.c:690:21: warning: variable 'last' set but not used [-Wunused-but-set-variable] ddvcreate.c:686:21: warning: variable 'PopulateTo' set but not used [-Wunused-but-set-variable] ddvcreate.c: In function 'DDV_DisplayNewBLAST': ddvcreate.c:1942:16: warning: variable 'what' set but not used [-Wunused-but-set-variable] ddvcreate.c: In function 'UDV_BigEncodeIdxFeat4': ddvcreate.c:2878:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ddvcreate.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ddvcreate.c:525:16: warning: 'DDV_CreateDisplayFromIndex_2' defined but not used [-Wunused-function] ddvcreate.c:2362:16: warning: 'DDV_DisplayBlastSAP' defined but not used [-Wunused-function] ddvcreate.c: In function 'UAMgrIntUAMsg': ddvcreate.c:1141:11: warning: 'stop_middle' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c:1158:73: note: 'stop_middle' was declared here ddvcreate.c:1195:18: warning: 'start_middle' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c:1158:60: note: 'start_middle' was declared here ddvcreate.c:1201:60: warning: 'halfBspLengthSeqR' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c:1158:24: note: 'halfBspLengthSeqR' was declared here ddvcreate.c:1141:11: warning: 'halfBspLengthSeqL' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c:1158:6: note: 'halfBspLengthSeqL' was declared here ddvcreate.c: In function 'DDV_PopulateDisplayForDisc': ddvcreate.c:1048:16: warning: 'vnp_para' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c: In function 'UABuildDescriptor2': ddvcreate.c:1541:13: warning: 'stopcopy' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c: In function 'DDV_DumpSAPInAFile': ddvcreate.c:1798:20: warning: 'matrix' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c: In function 'DDV_ReadSeqBin': ddvcreate.c:2571:13: warning: 'btr' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF jsavlt.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF needleman.c needleman.c: In function 'NeedlemanWunschQuadraticByLoc': needleman.c:281:24: warning: variable 'bestDbPos' set but not used [-Wunused-but-set-variable] needleman.c:281:10: warning: variable 'bestQueryPos' set but not used [-Wunused-but-set-variable] needleman.c: In function 'FetchSequenceByLoc': needleman.c:202:13: warning: 'query' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF txalign.c txalign.c: In function 'addLinkoutForDefline': txalign.c:703:13: warning: variable 'hasLinkout' set but not used [-Wunused-but-set-variable] txalign.c: In function 'addLinkoutForBioseq': txalign.c:771:13: warning: variable 'hasLinkout' set but not used [-Wunused-but-set-variable] txalign.c: In function 'DrawTextToBuffer': txalign.c:1769:8: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Nlm_Int4' [-Wformat] txalign.c:1769:8: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'int' [-Wformat] txalign.c:1769:8: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Nlm_Int4' [-Wformat] txalign.c:1769:8: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'int' [-Wformat] txalign.c:1822:7: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat] txalign.c: In function 'load_align_sum_for_StdSeg': txalign.c:2747:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] txalign.c: In function 'ShowAlignNodeText2Ex': txalign.c:3547:13: warning: variable 'is_end' set but not used [-Wunused-but-set-variable] txalign.c: In function 'Tx_PrintDefLine': txalign.c:4596:7: warning: unused variable 'seqid_length' [-Wunused-variable] txalign.c: In function 'PrintDefLinesFromSeqAlignWithPath': txalign.c:5011:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses] txalign.c:5015:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses] txalign.c:4717:10: warning: unused variable 'ColumnDistance' [-Wunused-variable] txalign.c:4709:43: warning: unused variable 'sip_list' [-Wunused-variable] txalign.c:4705:17: warning: variable 'ptr_start' set but not used [-Wunused-but-set-variable] txalign.c: In function 'FormatScoreFromSeqAlignEx': txalign.c:5334:25: warning: unused variable 't_adj' [-Wunused-variable] txalign.c:5333:29: warning: unused variable 'last_t_to' [-Wunused-variable] txalign.c: In function 'FSFPrintOneDefline': txalign.c:5442:14: warning: variable 'seqid_len' set but not used [-Wunused-but-set-variable] txalign.c: In function 'FormatScoreFunc': txalign.c:5659:13: warning: variable 'allocated' set but not used [-Wunused-but-set-variable] txalign.c: In function 'OOFShowSingleAlignment': txalign.c:6325:13: warning: array subscript has type 'char' [-Wchar-subscripts] txalign.c:6325:13: warning: array subscript has type 'char' [-Wchar-subscripts] txalign.c:6092:13: warning: variable 'lines' set but not used [-Wunused-but-set-variable] txalign.c: In function 'OOFDisplayTraceBack1': txalign.c:6580:33: warning: unused variable 'st' [-Wunused-variable] txalign.c:6580:9: warning: unused variable 'tmp' [-Wunused-variable] txalign.c: In function 'OOFDisplayTraceBack2': txalign.c:6654:33: warning: unused variable 'st' [-Wunused-variable] txalign.c: In function 'FDGetTaxNamesFromBioseq': txalign.c:6756:21: warning: variable 'bdsp' set but not used [-Wunused-but-set-variable] txalign.c: At top level: txalign.c:627:16: warning: 'getNameInitials' defined but not used [-Wunused-function] txalign.c:825:19: warning: 'ProcessTextInsertion' declared 'static' but never defined [-Wunused-function] txalign.c:2337:16: warning: 'has_hit_in_region' defined but not used [-Wunused-function] txalign.c:3432:1: warning: 'get_seq_id' defined but not used [-Wunused-function] txalign.c: In function 'CreateMaskByteStore': txalign.c:937:4: warning: 'mol' may be used uninitialized in this function [-Wuninitialized] txalign.c:985:8: note: 'mol' was declared here txalign.c: In function 'OOFShowSingleAlignment.isra.10': txalign.c:6047:5: warning: 'dna_line_start' may be used uninitialized in this function [-Wuninitialized] txalign.c:6088:32: note: 'dna_line_start' was declared here txalign.c:6047:5: warning: 'pro_line_start' may be used uninitialized in this function [-Wuninitialized] txalign.c:6088:48: note: 'pro_line_start' was declared here txalign.c: In function 'find_score_in_align': txalign.c:2597:33: warning: 'smtp' may be used uninitialized in this function [-Wuninitialized] txalign.c:2497:20: note: 'smtp' was declared here txalign.c:2461:11: warning: 't_spp' may be used uninitialized in this function [-Wuninitialized] txalign.c:2393:23: note: 't_spp' was declared here txalign.c:2458:14: warning: 'm_spp' may be used uninitialized in this function [-Wuninitialized] txalign.c:2393:16: note: 'm_spp' was declared here txalign.c: In function 'ShowAlignNodeText2Ex.isra.11': txalign.c:2283:11: warning: 'm_len' may be used uninitialized in this function [-Wuninitialized] txalign.c:3542:10: note: 'm_len' was declared here txalign.c: In function 'ShowTextAlignFromAnnot3': txalign.c:1241:13: warning: 'retval' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF fdlobj.c fdlobj.c: In function 'BlastDefLineSetAsnRead': fdlobj.c:69:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] fdlobj.c: In function 'BlastDefLineAsnRead': fdlobj.c:202:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF alignmgr2.c alignmgr2.c: In function 'AlnMgr2IndexSingleDenseSegSA': alignmgr2.c:875:13: warning: statement with no effect [-Wunused-value] alignmgr2.c: In function 'AlnMgr2CopySeg': alignmgr2.c:2967:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] alignmgr2.c: In function 'AlnMgr2AddInNewPairwiseSA': alignmgr2.c:3204:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] alignmgr2.c:3206:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] alignmgr2.c:3216:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] alignmgr2.c:3220:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] alignmgr2.c: In function 'AlnMgr2SetUnaln': alignmgr2.c:5393:22: warning: variable 'dsp' set but not used [-Wunused-but-set-variable] alignmgr2.c: In function 'AlnMgr2PrintSeqAlign': alignmgr2.c:5606:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] alignmgr2.c: In function 'AlnMgr2GetNextAlnBit': alignmgr2.c:5702:21: warning: variable 'found' set but not used [-Wunused-but-set-variable] alignmgr2.c: In function 'AlnMgr2GetUnalignedInfo': alignmgr2.c:6068:22: warning: variable 'saip' set but not used [-Wunused-but-set-variable] alignmgr2.c: In function 'AlnMgr2GetInterruptInfo': alignmgr2.c:6314:7: warning: statement with no effect [-Wunused-value] alignmgr2.c: In function 'AlnMgr2ComputeScoreForSeqAlign': alignmgr2.c:8324:17: warning: variable 'numseqs' set but not used [-Wunused-but-set-variable] alignmgr2.c:8322:17: warning: variable 'mismatch' set but not used [-Wunused-but-set-variable] alignmgr2.c:8321:17: warning: variable 'len' set but not used [-Wunused-but-set-variable] alignmgr2.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] alignmgr2.c:2123:13: warning: 'AlnMgr2SortVerticesByNumEdges' defined but not used [-Wunused-function] alignmgr2.c:2351:18: warning: 'AlnMgr2GetEdgeList' defined but not used [-Wunused-function] alignmgr2.c:3540:13: warning: 'AlnMgr2AddInNewSA' defined but not used [-Wunused-function] alignmgr2.c:1051:13: warning: 'AlnMgr2UnpackSeqAlignChain' defined but not used [-Wunused-function] alignmgr2.c: In function 'AlnMgr2GetLongestSeqLoc': alignmgr2.c:10114:15: warning: 'slp_longest' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2IndexLite': alignmgr2.c:991:33: warning: 'sap_segs_prev' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:958:17: note: 'sap_segs_prev' was declared here alignmgr2.c: In function 'AlnMgr2GetUnalignedInfo': alignmgr2.c:6099:27: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetMaxUnalignedLength': alignmgr2.c:7031:22: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:7060:19: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetInterruptInfo': alignmgr2.c:6336:16: warning: 'iip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6177:15: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6321:32: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNthSeqRangeInSA': alignmgr2.c:6459:16: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6472:57: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNthRowSpanInSA': alignmgr2.c:6516:16: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6541:41: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetAlnLength': alignmgr2.c:6772:45: warning: 'salp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6757:12: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6769:22: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNextAlnBit': alignmgr2.c:5757:44: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:5808:22: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2IsSAPDiscAli': alignmgr2.c:6796:12: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNumAlnBlocks': alignmgr2.c:6819:12: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNthBlockRange': alignmgr2.c:6853:20: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNthUnalignedForNthRow': alignmgr2.c:6909:75: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6919:65: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNextLengthBit': alignmgr2.c:7001:25: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6937:22: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNumSegsInRange': alignmgr2.c:7168:62: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:7169:9: warning: 'aligncoords' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2MapBioseqToSeqAlign': alignmgr2.c:7602:18: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:7573:21: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2MapSeqAlignToBioseq': alignmgr2.c:7695:18: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:7713:36: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetSubAlign': alignmgr2.c:8248:34: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:8019:7: warning: 'sap_real' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2FillInUnaligned': alignmgr2.c:9852:12: warning: 'offset' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF alnread.c alnread.c: In function 's_AddStringCount': alnread.c:1901:30: warning: variable 'last' set but not used [-Wunused-but-set-variable] alnread.c: In function 's_RemoveCommentsFromTokens': alnread.c:4332:19: warning: variable 'cp_l' set but not used [-Wunused-but-set-variable] alnread.c: In function 's_CreateOffsetList': alnread.c:4637:23: warning: variable 'prev_sip' set but not used [-Wunused-but-set-variable] alnread.c: In function 's_InsertNewOffsets': alnread.c:5034:23: warning: variable 'prev_start' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF acerdapi.c acerdapi.c: In function 'DoesSeqStringMatchBsp': acerdapi.c:201:30: warning: variable 'seq_len' set but not used [-Wunused-but-set-variable] acerdapi.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF aceread.c aceread.c:140:12: warning: 's_IsGapChar' defined but not used [-Wunused-function] aceread.c:253:13: warning: 'AdjustGapInfoFor5Trim' defined but not used [-Wunused-function] aceread.c:282:13: warning: 'AdjustGapInfoFor3Trim' defined but not used [-Wunused-function] aceread.c:3314:12: warning: 's_GetUngappedPosition' defined but not used [-Wunused-function] aceread.c: In function 's_ReadContig': aceread.c:1483:38: warning: 'linestring' may be used uninitialized in this function [-Wuninitialized] rm -f libncbiobj.a ar cru libncbiobj.a objacces.o objalign.o objall.o objbibli.o objfeat.o objgen.o objloc.o objmedli.o objpub.o objres.o objscoremat.o objseq.o objblock.o objcode.o objsset.o objsub.o objprt.o objfdef.o objalignloc.o objtable.o objpubme.o objmdrs.o objproj.o objgbseq.o objtseq.o objinsdseq.o objmacro.o objent2.o ent2api.o pmfapi.o objtax3.o tax3api.o objegkludge.o objentgene.o objmla2.o mla2api.o qblastapi.o vecscnapi.o objmim.o objvalid.o mimapi.o cddapi.o seqport.o sequtil.o prtutil.o simple.o tofasta.o tofile.o tomedlin.o valid.o valapi.o alignmgr.o aliparse.o aliread.o alignval.o sqnutil1.o sqnutil2.o sqnutil3.o sqnutil4.o subutil.o edutil.o asn2ff1.o asn2ff2.o asn2ff3.o asn2ff4.o asn2ff5.o asn2ff6.o asn2gnb1.o asn2gnb2.o asn2gnb3.o asn2gnb4.o asn2gnb5.o asn2gnb6.o ftusrstr.o gbfeat.o gbftglob.o gbparint.o utilpars.o utilpub.o ffprint.o wprint.o satutil.o seqmgr.o objmgr.o gather.o accmmdbs.o acccn3ds.o lsqfetch.o findrepl.o codon.o jzcoll.o jzmisc.o maputil.o mconsist.o macroapi.o salpedit.o salpstat.o salpacc.o salprop.o salsap.o salstruc.o salutil.o udvseq.o blocks.o pgppop.o samutil.o ddvcolor.o viewmgr.o ddvcreate.o jsavlt.o needleman.o txalign.o fdlobj.o alignmgr2.o alnread.o acerdapi.o aceread.o cp -p libncbiobj.a ../lib ranlib ../lib/libncbiobj.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF cdentrez.c cdentrez.c:1616:26: warning: 'FreePostingList' defined but not used [-Wunused-function] cdentrez.c:2935:23: warning: 'MedSumAsnRead' defined but not used [-Wunused-function] cdentrez.c:283:23: warning: 'CdEntMlSumGet' declared 'static' but never defined [-Wunused-function] cdentrez.c:307:20: warning: 'BIOSEQ_id_E' defined but not used [-Wunused-variable] cdentrez.c:310:23: warning: 'CdEntSeqSumGet' declared 'static' but never defined [-Wunused-function] cdentrez.c: In function 'CdEntrezMergeTerm': cdentrez.c:2665:27: warning: 'total' may be used uninitialized in this function [-Wuninitialized] cdentrez.c:2672:17: warning: 'special' may be used uninitialized in this function [-Wuninitialized] cdentrez.c:2640:20: warning: 'termpage' may be used uninitialized in this function [-Wuninitialized] cdentrez.c: In function 'CdLinkUidList': cdentrez.c:938:2: warning: 'count' may be used uninitialized in this function [-Wuninitialized] cdentrez.c: In function 'CdTermListByTerm': cdentrez.c:1036:10: warning: 'first' may be used uninitialized in this function [-Wuninitialized] cdentrez.c: In function 'CdEntrezFindTerm': cdentrez.c:1121:14: warning: 'ctp' may be used uninitialized in this function [-Wuninitialized] cdentrez.c: In function 'CdEntTLAddTerm': cdentrez.c:1895:33: warning: 'total' may be used uninitialized in this function [-Wuninitialized] cdentrez.c:1787:13: note: 'total' was declared here cdentrez.c: In function 'CdEntMedlineEntryListGet': cdentrez.c:2717:9: warning: 'aip' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF cdromlib.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF cdnewlib.c cdnewlib.c:601:2: warning: missing braces around initializer [-Wmissing-braces] cdnewlib.c:601:2: warning: (near initialization for '_finfo[0]') [-Wmissing-braces] cdnewlib.c:615:2: warning: missing braces around initializer [-Wmissing-braces] cdnewlib.c:615:2: warning: (near initialization for '_dir[0]') [-Wmissing-braces] cdnewlib.c: In function 'cd3_CdDocAsnOpen': cdnewlib.c:1327:9: warning: unused variable 'fdir' [-Wunused-variable] cdnewlib.c: In function 'CdDevice_Init': cdnewlib.c:2739:6: warning: variable 'cd_num' set but not used [-Wunused-but-set-variable] cdnewlib.c: At top level: cdnewlib.c:3506:12: warning: 'Cache_Delete' defined but not used [-Wunused-function] cdnewlib.c:3569:12: warning: 'Cache_Touch' defined but not used [-Wunused-function] cdnewlib.c:3592:14: warning: 'Cache_Peek' defined but not used [-Wunused-function] cdnewlib.c:3605:13: warning: 'Cache_Purge' defined but not used [-Wunused-function] cdnewlib.c:582:15: warning: '_empty_string' defined but not used [-Wunused-variable] cdnewlib.c:638:18: warning: '_div' defined but not used [-Wunused-variable] cdnewlib.c: In function 'UnixFileGets': cdnewlib.c:1509:6: warning: 'ch' may be used uninitialized in this function [-Wuninitialized] cdnewlib.c: In function 'trmncmp': cdnewlib.c:2379:2: warning: 'c2' may be used uninitialized in this function [-Wuninitialized] cdnewlib.c:2379:2: warning: 'c1' may be used uninitialized in this function [-Wuninitialized] In file included from /usr/include/string.h:642:0, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objacces.h:64, from ../include/cdromlib.h:71, from cdnewlib.c:208: In function 'strncat', inlined from 'CdDevice_FileBuildPath.part.16' at cdnewlib.c:2679:12, inlined from 'CdDevice_FileBuildPath' at cdnewlib.c:2662:12: /usr/include/i386-linux-gnu/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] In function 'strncat', inlined from 'CdDevice_Init.part.20' at cdnewlib.c:2751:10: /usr/include/i386-linux-gnu/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] In function 'strncat', inlined from 'CdDevice_Init.part.20' at cdnewlib.c:2769:13: /usr/include/i386-linux-gnu/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] cdnewlib.c: In function 'UidIndex_Lookup': cdnewlib.c:1986:20: warning: 'p' may be used uninitialized in this function [-Wuninitialized] cdnewlib.c:1986:30: warning: 'mid' may be used uninitialized in this function [-Wuninitialized] cdnewlib.c: In function 'TrmIndex_Lookup': cdnewlib.c:2168:33: warning: 'term' may be used uninitialized in this function [-Wuninitialized] cdnewlib.c:2166:12: warning: 'd' may be used uninitialized in this function [-Wuninitialized] cdnewlib.c:2166:24: warning: 'mid' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF casn.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF cdconfig.c cdconfig.c: In function 'ChangeMedia': cdconfig.c:941:29: warning: statement with no effect [-Wunused-value] cdconfig.c:960:17: warning: statement with no effect [-Wunused-value] cdconfig.c: At top level: cdconfig.c:191:17: warning: 'UnMarkLRUineligible' declared 'static' but never defined [-Wunused-function] cdconfig.c: In function 'EntrezInfoMerge': cdconfig.c:1250:44: warning: 'besttype' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objentr.c objentr.c: In function 'DocSumAsnRead': objentr.c:970:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentr.c:969:12: warning: unused variable 'isError' [-Wunused-variable] objentr.c: At top level: objentr.c:771:16: warning: 'EntrezLinkInfo_AsnWrite' defined but not used [-Wunused-function] objentr.c:806:23: warning: 'EntrezDivInfo_Destruct' defined but not used [-Wunused-function] objentr.c: In function 'EntrezInfoAsnRead': objentr.c:818:5: warning: 'div' may be used uninitialized in this function [-Wuninitialized] objentr.c:241:17: note: 'div' was declared here objentr.c:763:17: warning: 'link' may be used uninitialized in this function [-Wuninitialized] objentr.c:240:18: note: 'link' was declared here objentr.c:704:19: warning: 'fld' may be used uninitialized in this function [-Wuninitialized] objentr.c:239:19: note: 'fld' was declared here objentr.c:649:18: warning: 'tinf' may be used uninitialized in this function [-Wuninitialized] objentr.c:238:18: note: 'tinf' was declared here objentr.c:856:16: warning: 'i' may be used uninitialized in this function [-Wuninitialized] objentr.c:824:7: note: 'i' was declared here rm -f libncbicdr.a ar cru libncbicdr.a cdentrez.o cdromlib.o cdnewlib.o casn.o cdconfig.o objentr.o cp -p libncbicdr.a ../lib ranlib ../lib/libncbicdr.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF vibbutns.c vibbutns.c: In function 'Nlm_LoadButtonData': vibbutns.c:117:5: warning: statement with no effect [-Wunused-value] vibbutns.c: In function 'Nlm_GetButtonData': vibbutns.c:133:7: warning: statement with no effect [-Wunused-value] vibbutns.c: In function 'Nlm_CheckCallback': vibbutns.c:328:20: warning: variable 'c' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_RadioCallback': vibbutns.c:347:20: warning: variable 'c' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_RemoveDefaultButton': vibbutns.c:564:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_SetButtonStatus': vibbutns.c:668:20: warning: variable 'val' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_SetButtonDefault': vibbutns.c:1416:7: warning: statement with no effect [-Wunused-value] vibbutns.c: In function 'Nlm_NewButton.isra.5': vibbutns.c:1133:17: warning: 'call' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF vibextra.c vibextra.c: In function 'Nlm_RGB2HSL.constprop.2': vibextra.c:1216:7: warning: 'min' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF vibfiles.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF vibforms.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF vibgroup.c vibgroup.c: In function 'Nlm_LoadGroupData': vibgroup.c:142:5: warning: statement with no effect [-Wunused-value] vibgroup.c: In function 'Nlm_GetGroupData': vibgroup.c:159:7: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF viblists.c viblists.c: In function 'Nlm_LoadListData': viblists.c:220:5: warning: statement with no effect [-Wunused-value] viblists.c: In function 'Nlm_SetListData': viblists.c:233:5: warning: statement with no effect [-Wunused-value] viblists.c: In function 'Nlm_GetListData': viblists.c:250:7: warning: statement with no effect [-Wunused-value] viblists.c: In function 'Nlm_SetListPosition': viblists.c:1118:15: warning: variable 'is_realized' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF vibmenus.c vibmenus.c: In function 'Nlm_LoadMenuData': vibmenus.c:193:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetMenuData': vibmenus.c:210:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_LoadItemData': vibmenus.c:230:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_SetItemData': vibmenus.c:243:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetItemData': vibmenus.c:261:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_LoadChoiceData': vibmenus.c:283:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_SetChoiceData': vibmenus.c:296:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetChoiceData': vibmenus.c:313:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_LoadMenuBarData': vibmenus.c:331:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetMenuBarData': vibmenus.c:363:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_IsMenuItemChecked': vibmenus.c:563:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_CheckMenuItem': vibmenus.c:591:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableMenuItem': vibmenus.c:1986:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:1985:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableChoice': vibmenus.c:2052:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableChoiceGroup': vibmenus.c:2102:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableChoiceItem': vibmenus.c:2146:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:2144:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_DisableMenuItem': vibmenus.c:2309:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:2308:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_DisableChoice': vibmenus.c:2375:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_DisableChoiceItem': vibmenus.c:2469:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:2467:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_RemoveSubMenu': vibmenus.c:2607:20: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_CountMenuItems': vibmenus.c:3036:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_GetMenuItem': vibmenus.c:3219:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_GetPopListTitle': vibmenus.c:3329:18: warning: variable 'm' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_AppendItems': vibmenus.c:3948:17: warning: unused variable 'accel' [-Wunused-variable] vibmenus.c: In function 'Nlm_NewPopupList': vibmenus.c:4939:19: warning: unused variable 'lbl' [-Wunused-variable] vibmenus.c:4937:19: warning: unused variable 'color' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF vibprmpt.c vibprmpt.c: In function 'Nlm_LoadPromptData': vibprmpt.c:129:5: warning: statement with no effect [-Wunused-value] vibprmpt.c: In function 'Nlm_GetPromptData': vibprmpt.c:145:7: warning: statement with no effect [-Wunused-value] vibprmpt.c: In function 'Nlm_NewPrompt': vibprmpt.c:663:5: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF vibsbars.c vibsbars.c: In function 'Nlm_SetBarData': vibsbars.c:191:3: warning: statement with no effect [-Wunused-value] vibsbars.c: In function 'Nlm_GetBarData': vibsbars.c:208:7: warning: statement with no effect [-Wunused-value] vibsbars.c: In function 'Nlm_LoadBarData': vibsbars.c:429:3: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF vibslate.c vibslate.c: In function 'Nlm_LoadSlateData': vibslate.c:247:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetSlateData': vibslate.c:260:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetSlateData': vibslate.c:277:7: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_LoadPanelData': vibslate.c:305:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetPanelData': vibslate.c:317:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetPanelData': vibslate.c:329:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_LoadDisplayData': vibslate.c:351:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetDisplayData': vibslate.c:364:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetDisplayData': vibslate.c:381:7: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetPanelExtra': vibslate.c:407:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetPanelExtra': vibslate.c:430:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SlateVertScrollAction': vibslate.c:1003:11: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_EnableSlate': vibslate.c:1199:18: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_DisableSlate': vibslate.c:1254:18: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_SelectSlate': vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat] vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_SelectPanel': vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat] vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_GetPanelOffset': vibslate.c:1624:7: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SlateClick': vibslate.c:2026:20: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_SlateClickCallback': vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat] vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_SlateInputCallback': vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat] vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_SlateDrawCallback': vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat] vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_RegisterRow': vibslate.c:3400:9: warning: statement with no effect [-Wunused-value] vibslate.c:3410:13: warning: statement with no effect [-Wunused-value] vibslate.c:3426:7: warning: statement with no effect [-Wunused-value] vibslate.c:3454:7: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF vibtexts.c vibtexts.c: In function 'Nlm_LoadTextData': vibtexts.c:154:5: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_SetTextData': vibtexts.c:167:5: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_GetTextData': vibtexts.c:184:7: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_SetPassword': vibtexts.c:312:7: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_GetPassword': vibtexts.c:324:7: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_GetPasswordLength': vibtexts.c:333:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_TextCallback': vibtexts.c:2982:24: warning: unused variable 'cbs' [-Wunused-variable] vibtexts.c: In function 'Nlm_LoseFocusCallback': vibtexts.c:2999:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_TabCallback': vibtexts.c:3109:15: warning: variable 'event' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_HiddenReturnCallback': vibtexts.c:3122:15: warning: variable 'event' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_HiddenActivateCallback': vibtexts.c:3135:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_NewDialogText': vibtexts.c:3229:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewPasswordText': vibtexts.c:3338:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewHiddenText': vibtexts.c:3456:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewSpecialText': vibtexts.c:3582:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewScrollText': vibtexts.c:3756:5: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF vibutils.c vibutils.c: In function 'Nlm_SetString': vibutils.c:506:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetString': vibutils.c:526:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_LinkIn': vibutils.c:2385:5: warning: statement with no effect [-Wunused-value] vibutils.c:2389:7: warning: statement with no effect [-Wunused-value] vibutils.c:2392:7: warning: statement with no effect [-Wunused-value] vibutils.c:2401:7: warning: statement with no effect [-Wunused-value] vibutils.c:2404:7: warning: statement with no effect [-Wunused-value] vibutils.c:2409:7: warning: statement with no effect [-Wunused-value] vibutils.c:2416:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_LoadGraphicData': vibutils.c:2462:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_LoadBoxData': vibutils.c:2492:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_RemoveLink': vibutils.c:2578:11: warning: statement with no effect [-Wunused-value] vibutils.c:2586:3: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_SetGraphicData': vibutils.c:2922:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetGraphicData': vibutils.c:2939:7: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_SetBoxData': vibutils.c:2954:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetBoxData': vibutils.c:2971:7: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_SetExtraData': vibutils.c:2996:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetExtraData': vibutils.c:3018:5: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF vibwndws.c vibwndws.c: In function 'Nlm_LoadWindowData': vibwndws.c:411:5: warning: statement with no effect [-Wunused-value] vibwndws.c: In function 'Nlm_SetWindowData': vibwndws.c:424:5: warning: statement with no effect [-Wunused-value] vibwndws.c: In function 'Nlm_GetWindowData': vibwndws.c:441:7: warning: statement with no effect [-Wunused-value] vibwndws.c: In function 'Nlm_SetColorMap': vibwndws.c:1060:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_SetWindowTitle': vibwndws.c:1567:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_GetWindowTitle': vibwndws.c:1610:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_NewWindow': vibwndws.c:2155:19: warning: variable 'screen_num' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_HideWindow': vibwndws.c:2526:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_ShowNormal': vibwndws.c:2969:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_ShowModal': vibwndws.c:3014:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_ShowDocument': vibwndws.c:3060:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_VibMainPrelude': vibwndws.c:6771:13: warning: unused variable 'retval' [-Wunused-variable] vibwndws.c: In function 'Nlm_RemoveDyingWindows': vibwndws.c:6893:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF vibmain.c vibmain.c:121:1: warning: return type defaults to 'int' [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbidraw.c ncbidraw.c: In function 'Nlm_SetFontData': ncbidraw.c:489:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_GetFontData': ncbidraw.c:501:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_FindFont': ncbidraw.c:2234:7: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_ReuseFont': ncbidraw.c:2252:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_GetFontSpec': ncbidraw.c:2860:5: warning: statement with no effect [-Wunused-value] ncbidraw.c:2867:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_AssignPrinterFont': ncbidraw.c:2928:5: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF drawing.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF mapping.c mapping.c: In function 'Nlm_MapRectToWorldBox': mapping.c:139:8: warning: variable 'curScale' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF picture.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF viewer.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF document.c document.c: In function 'Nlm_PrintDocument': document.c:4413:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] document.c:4417:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF table.c table.c: In function 'SetCellRec': table.c:136:9: warning: statement with no effect [-Wunused-value] table.c:138:7: warning: statement with no effect [-Wunused-value] table.c: In function 'GetCellRec': table.c:175:9: warning: statement with no effect [-Wunused-value] table.c:177:7: warning: statement with no effect [-Wunused-value] table.c: In function 'GetColRec': table.c:231:7: warning: statement with no effect [-Wunused-value] table.c: In function 'DrawTable': table.c:314:9: warning: statement with no effect [-Wunused-value] table.c:317:5: warning: statement with no effect [-Wunused-value] table.c:318:5: warning: statement with no effect [-Wunused-value] table.c:319:5: warning: statement with no effect [-Wunused-value] table.c:334:5: warning: statement with no effect [-Wunused-value] table.c: In function 'RecordColumn': table.c:380:5: warning: statement with no effect [-Wunused-value] table.c: In function 'RecordSegment': table.c:428:7: warning: statement with no effect [-Wunused-value] table.c:440:9: warning: statement with no effect [-Wunused-value] table.c:442:7: warning: statement with no effect [-Wunused-value] table.c: In function 'CopyToHandle': table.c:510:7: warning: statement with no effect [-Wunused-value] table.c:518:7: warning: statement with no effect [-Wunused-value] table.c:527:7: warning: statement with no effect [-Wunused-value] table.c: In function 'AppendTableText': table.c:632:7: warning: statement with no effect [-Wunused-value] table.c: In function 'GetTableText': table.c:710:13: warning: statement with no effect [-Wunused-value] table.c:718:11: warning: statement with no effect [-Wunused-value] table.c:727:9: warning: statement with no effect [-Wunused-value] table.c:743:7: warning: statement with no effect [-Wunused-value] table.c: In function 'TableTextLength': table.c:783:13: warning: statement with no effect [-Wunused-value] table.c:791:11: warning: statement with no effect [-Wunused-value] table.c:800:9: warning: statement with no effect [-Wunused-value] table.c: In function 'ResetTable': table.c:1090:5: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF palette.c palette.c: In function 'DrawPalette': palette.c:116:5: warning: statement with no effect [-Wunused-value] palette.c: In function 'AppendPalette': palette.c:161:5: warning: statement with no effect [-Wunused-value] palette.c: In function 'SetPaletteValue': palette.c:216:7: warning: statement with no effect [-Wunused-value] palette.c: In function 'GetPaletteValue': palette.c:240:7: warning: statement with no effect [-Wunused-value] palette.c: In function 'PaletteClick': palette.c:306:7: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF diagnost.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF image.c image.c: In function 'Nlm_AllocateImage': image.c:207:28: warning: statement with no effect [-Wunused-value] image.c:274:3: warning: statement with no effect [-Wunused-value] image.c: In function 'Nlm_DeleteImage': image.c:691:9: warning: statement with no effect [-Wunused-value] image.c: In function 'Nlm_UnlockPixMapImage': image.c:804:7: warning: statement with no effect [-Wunused-value] image.c: In function 'ShiftXMask': image.c:840:9: warning: suggest parentheses around '+' inside '>>' [-Wparentheses] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF pictur3d.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF prim3d1.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF prim3d2.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF prim3d3.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF prim3d4.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF prim3d5.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF viewer3d.c viewer3d.c: In function 'DrawViewer3D': viewer3d.c:521:7: warning: statement with no effect [-Wunused-value] viewer3d.c: In function 'Nlm_RedrawPrim3D': viewer3d.c:995:3: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF vibmouse.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF netscape.c netscape.c: In function 'NS_Obtain_lock': netscape.c:236:10: warning: variable 'waited' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF imagelst.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF treeview.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF shim3d.c shim3d.c: In function 'Nlm_AddHalfWorm3D': shim3d.c:3461:46: warning: unused variable 'tmp' [-Wunused-variable] shim3d.c:3461:40: warning: unused variable 'pCz' [-Wunused-variable] shim3d.c:3461:34: warning: unused variable 'pCy' [-Wunused-variable] shim3d.c:3461:28: warning: unused variable 'pCx' [-Wunused-variable] shim3d.c:3461:22: warning: unused variable 'pNz' [-Wunused-variable] shim3d.c:3461:16: warning: unused variable 'pNy' [-Wunused-variable] shim3d.c:3461:10: warning: unused variable 'pNx' [-Wunused-variable] shim3d.c:3460:47: warning: unused variable 'Cz' [-Wunused-variable] shim3d.c:3460:42: warning: unused variable 'Cy' [-Wunused-variable] shim3d.c:3460:37: warning: unused variable 'Cx' [-Wunused-variable] shim3d.c:3460:32: warning: unused variable 'Nz' [-Wunused-variable] shim3d.c:3460:27: warning: unused variable 'Ny' [-Wunused-variable] shim3d.c:3460:15: warning: unused variable 'Nx' [-Wunused-variable] shim3d.c:3459:21: warning: unused variable 'pi' [-Wunused-variable] shim3d.c:3459:15: warning: unused variable 'sinj' [-Wunused-variable] shim3d.c:3459:9: warning: unused variable 'cosj' [-Wunused-variable] shim3d.c:3458:33: warning: unused variable 'prevlen' [-Wunused-variable] shim3d.c:3458:29: warning: unused variable 'Vz' [-Wunused-variable] shim3d.c:3458:25: warning: unused variable 'Vy' [-Wunused-variable] shim3d.c:3458:21: warning: unused variable 'Vx' [-Wunused-variable] shim3d.c:3458:17: warning: unused variable 'Hz' [-Wunused-variable] shim3d.c:3458:13: warning: unused variable 'Hy' [-Wunused-variable] shim3d.c:3458:9: warning: unused variable 'Hx' [-Wunused-variable] shim3d.c:3457:21: warning: unused variable 'dQtz' [-Wunused-variable] shim3d.c:3457:15: warning: unused variable 'dQty' [-Wunused-variable] shim3d.c:3457:9: warning: unused variable 'dQtx' [-Wunused-variable] shim3d.c:3455:14: warning: unused variable 'len' [-Wunused-variable] shim3d.c:3454:26: warning: unused variable 'offset' [-Wunused-variable] shim3d.c:3454:23: warning: unused variable 'm' [-Wunused-variable] shim3d.c:3454:20: warning: unused variable 'k' [-Wunused-variable] shim3d.c:3454:17: warning: unused variable 'j' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF odlbox.c odlbox.c: In function 'LB_onVScroll': odlbox.c:424:12: warning: variable 'IsGoUp' set but not used [-Wunused-but-set-variable] rm -f libvibrant.a ar cru libvibrant.a vibbutns.o vibextra.o vibfiles.o vibforms.o vibgroup.o viblists.o vibmenus.o vibprmpt.o vibsbars.o vibslate.o vibtexts.o vibutils.o vibwndws.o vibmain.o ncbidraw.o drawing.o mapping.o picture.o viewer.o document.o table.o palette.o diagnost.o image.o pictur3d.o prim3d1.o prim3d2.o prim3d3.o prim3d4.o prim3d5.o viewer3d.o vibmouse.o netscape.o imagelst.o treeview.o shim3d.o odlbox.o cp -p libvibrant.a ../lib ranlib ../lib/libvibrant.a mv vibbutns.o vibbutns.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL vibbutns.c vibbutns.c: In function 'Nlm_LoadButtonData': vibbutns.c:117:5: warning: statement with no effect [-Wunused-value] vibbutns.c: In function 'Nlm_GetButtonData': vibbutns.c:133:7: warning: statement with no effect [-Wunused-value] vibbutns.c: In function 'Nlm_CheckCallback': vibbutns.c:328:20: warning: variable 'c' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_RadioCallback': vibbutns.c:347:20: warning: variable 'c' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_RemoveDefaultButton': vibbutns.c:564:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_SetButtonStatus': vibbutns.c:668:20: warning: variable 'val' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_SetButtonDefault': vibbutns.c:1416:7: warning: statement with no effect [-Wunused-value] vibbutns.c: In function 'Nlm_NewButton.isra.5': vibbutns.c:1133:17: warning: 'call' may be used uninitialized in this function [-Wuninitialized] mv vibbutns.o vibbutns.glo mv vibbutns.tmp vibbutns.o mv vibextra.o vibextra.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL vibextra.c vibextra.c: In function 'Nlm_RGB2HSL.constprop.2': vibextra.c:1216:7: warning: 'min' may be used uninitialized in this function [-Wuninitialized] mv vibextra.o vibextra.glo mv vibextra.tmp vibextra.o mv vibfiles.o vibfiles.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL vibfiles.c mv vibfiles.o vibfiles.glo mv vibfiles.tmp vibfiles.o mv vibforms.o vibforms.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL vibforms.c mv vibforms.o vibforms.glo mv vibforms.tmp vibforms.o mv vibgroup.o vibgroup.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL vibgroup.c vibgroup.c: In function 'Nlm_LoadGroupData': vibgroup.c:142:5: warning: statement with no effect [-Wunused-value] vibgroup.c: In function 'Nlm_GetGroupData': vibgroup.c:159:7: warning: statement with no effect [-Wunused-value] mv vibgroup.o vibgroup.glo mv vibgroup.tmp vibgroup.o mv viblists.o viblists.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL viblists.c viblists.c: In function 'Nlm_LoadListData': viblists.c:220:5: warning: statement with no effect [-Wunused-value] viblists.c: In function 'Nlm_SetListData': viblists.c:233:5: warning: statement with no effect [-Wunused-value] viblists.c: In function 'Nlm_GetListData': viblists.c:250:7: warning: statement with no effect [-Wunused-value] viblists.c: In function 'Nlm_SetListPosition': viblists.c:1118:15: warning: variable 'is_realized' set but not used [-Wunused-but-set-variable] mv viblists.o viblists.glo mv viblists.tmp viblists.o mv vibmenus.o vibmenus.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL vibmenus.c vibmenus.c: In function 'Nlm_LoadMenuData': vibmenus.c:193:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetMenuData': vibmenus.c:210:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_LoadItemData': vibmenus.c:230:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_SetItemData': vibmenus.c:243:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetItemData': vibmenus.c:261:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_LoadChoiceData': vibmenus.c:283:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_SetChoiceData': vibmenus.c:296:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetChoiceData': vibmenus.c:313:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_LoadMenuBarData': vibmenus.c:331:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetMenuBarData': vibmenus.c:363:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_IsMenuItemChecked': vibmenus.c:563:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_CheckMenuItem': vibmenus.c:591:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableMenuItem': vibmenus.c:1986:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:1985:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableChoice': vibmenus.c:2052:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableChoiceGroup': vibmenus.c:2102:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableChoiceItem': vibmenus.c:2146:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:2144:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_DisableMenuItem': vibmenus.c:2309:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:2308:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_DisableChoice': vibmenus.c:2375:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_DisableChoiceItem': vibmenus.c:2469:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:2467:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_RemoveSubMenu': vibmenus.c:2607:20: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_CountMenuItems': vibmenus.c:3036:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_GetMenuItem': vibmenus.c:3219:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_GetPopListTitle': vibmenus.c:3329:18: warning: variable 'm' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_AppendItems': vibmenus.c:3948:17: warning: unused variable 'accel' [-Wunused-variable] vibmenus.c: In function 'Nlm_NewPopupList': vibmenus.c:4939:19: warning: unused variable 'lbl' [-Wunused-variable] vibmenus.c:4937:19: warning: unused variable 'color' [-Wunused-variable] mv vibmenus.o vibmenus.glo mv vibmenus.tmp vibmenus.o mv vibprmpt.o vibprmpt.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL vibprmpt.c vibprmpt.c: In function 'Nlm_LoadPromptData': vibprmpt.c:129:5: warning: statement with no effect [-Wunused-value] vibprmpt.c: In function 'Nlm_GetPromptData': vibprmpt.c:145:7: warning: statement with no effect [-Wunused-value] vibprmpt.c: In function 'Nlm_NewPrompt': vibprmpt.c:663:5: warning: statement with no effect [-Wunused-value] mv vibprmpt.o vibprmpt.glo mv vibprmpt.tmp vibprmpt.o mv vibsbars.o vibsbars.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL vibsbars.c vibsbars.c: In function 'Nlm_SetBarData': vibsbars.c:191:3: warning: statement with no effect [-Wunused-value] vibsbars.c: In function 'Nlm_GetBarData': vibsbars.c:208:7: warning: statement with no effect [-Wunused-value] vibsbars.c: In function 'Nlm_LoadBarData': vibsbars.c:429:3: warning: statement with no effect [-Wunused-value] mv vibsbars.o vibsbars.glo mv vibsbars.tmp vibsbars.o mv vibslate.o vibslate.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL vibslate.c vibslate.c: In function 'Nlm_LoadSlateData': vibslate.c:247:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetSlateData': vibslate.c:260:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetSlateData': vibslate.c:277:7: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_LoadPanelData': vibslate.c:305:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetPanelData': vibslate.c:317:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetPanelData': vibslate.c:329:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_LoadDisplayData': vibslate.c:351:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetDisplayData': vibslate.c:364:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetDisplayData': vibslate.c:381:7: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetPanelExtra': vibslate.c:407:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetPanelExtra': vibslate.c:430:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SlateVertScrollAction': vibslate.c:1003:11: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_EnableSlate': vibslate.c:1199:18: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_DisableSlate': vibslate.c:1254:18: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_SelectSlate': vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat] vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_SelectPanel': vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat] vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_GetPanelOffset': vibslate.c:1624:7: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SlateClick': vibslate.c:2026:20: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_SlateClickCallback': vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat] vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_SlateInputCallback': vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat] vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_SlateDrawCallback': vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat] vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_Set3DColorMap': vibslate.c:2686:17: warning: unused variable 'testvisual' [-Wunused-variable] vibslate.c:2685:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_RegisterRow': vibslate.c:3400:9: warning: statement with no effect [-Wunused-value] vibslate.c:3410:13: warning: statement with no effect [-Wunused-value] vibslate.c:3426:7: warning: statement with no effect [-Wunused-value] vibslate.c:3454:7: warning: statement with no effect [-Wunused-value] mv vibslate.o vibslate.glo mv vibslate.tmp vibslate.o mv vibtexts.o vibtexts.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL vibtexts.c vibtexts.c: In function 'Nlm_LoadTextData': vibtexts.c:154:5: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_SetTextData': vibtexts.c:167:5: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_GetTextData': vibtexts.c:184:7: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_SetPassword': vibtexts.c:312:7: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_GetPassword': vibtexts.c:324:7: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_GetPasswordLength': vibtexts.c:333:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_TextCallback': vibtexts.c:2982:24: warning: unused variable 'cbs' [-Wunused-variable] vibtexts.c: In function 'Nlm_LoseFocusCallback': vibtexts.c:2999:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_TabCallback': vibtexts.c:3109:15: warning: variable 'event' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_HiddenReturnCallback': vibtexts.c:3122:15: warning: variable 'event' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_HiddenActivateCallback': vibtexts.c:3135:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_NewDialogText': vibtexts.c:3229:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewPasswordText': vibtexts.c:3338:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewHiddenText': vibtexts.c:3456:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewSpecialText': vibtexts.c:3582:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewScrollText': vibtexts.c:3756:5: warning: statement with no effect [-Wunused-value] mv vibtexts.o vibtexts.glo mv vibtexts.tmp vibtexts.o mv vibutils.o vibutils.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL vibutils.c vibutils.c: In function 'Nlm_SetString': vibutils.c:506:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetString': vibutils.c:526:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_LinkIn': vibutils.c:2385:5: warning: statement with no effect [-Wunused-value] vibutils.c:2389:7: warning: statement with no effect [-Wunused-value] vibutils.c:2392:7: warning: statement with no effect [-Wunused-value] vibutils.c:2401:7: warning: statement with no effect [-Wunused-value] vibutils.c:2404:7: warning: statement with no effect [-Wunused-value] vibutils.c:2409:7: warning: statement with no effect [-Wunused-value] vibutils.c:2416:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_LoadGraphicData': vibutils.c:2462:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_LoadBoxData': vibutils.c:2492:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_RemoveLink': vibutils.c:2578:11: warning: statement with no effect [-Wunused-value] vibutils.c:2586:3: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_SetGraphicData': vibutils.c:2922:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetGraphicData': vibutils.c:2939:7: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_SetBoxData': vibutils.c:2954:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetBoxData': vibutils.c:2971:7: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_SetExtraData': vibutils.c:2996:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetExtraData': vibutils.c:3018:5: warning: statement with no effect [-Wunused-value] mv vibutils.o vibutils.glo mv vibutils.tmp vibutils.o mv vibwndws.o vibwndws.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL vibwndws.c vibwndws.c: In function 'Nlm_LoadWindowData': vibwndws.c:411:5: warning: statement with no effect [-Wunused-value] vibwndws.c: In function 'Nlm_SetWindowData': vibwndws.c:424:5: warning: statement with no effect [-Wunused-value] vibwndws.c: In function 'Nlm_GetWindowData': vibwndws.c:441:7: warning: statement with no effect [-Wunused-value] vibwndws.c: In function 'Nlm_SetColorMap': vibwndws.c:1060:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_SetWindowTitle': vibwndws.c:1567:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_GetWindowTitle': vibwndws.c:1610:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_NewWindow': vibwndws.c:2155:19: warning: variable 'screen_num' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_HideWindow': vibwndws.c:2526:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_ShowNormal': vibwndws.c:2969:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_ShowModal': vibwndws.c:3014:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_ShowDocument': vibwndws.c:3060:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_VibMainPrelude': vibwndws.c:6771:13: warning: unused variable 'retval' [-Wunused-variable] vibwndws.c: In function 'Nlm_RemoveDyingWindows': vibwndws.c:6893:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: At top level: vibwndws.c:1318:16: warning: 'Nlm_StandardColormap' defined but not used [-Wunused-function] mv vibwndws.o vibwndws.glo mv vibwndws.tmp vibwndws.o mv vibmain.o vibmain.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL vibmain.c vibmain.c:121:1: warning: return type defaults to 'int' [-Wreturn-type] mv vibmain.o vibmain.glo mv vibmain.tmp vibmain.o mv ncbidraw.o ncbidraw.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL ncbidraw.c ncbidraw.c: In function 'Nlm_SetFontData': ncbidraw.c:489:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_GetFontData': ncbidraw.c:501:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_FindFont': ncbidraw.c:2234:7: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_ReuseFont': ncbidraw.c:2252:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_GetFontSpec': ncbidraw.c:2860:5: warning: statement with no effect [-Wunused-value] ncbidraw.c:2867:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_AssignPrinterFont': ncbidraw.c:2928:5: warning: statement with no effect [-Wunused-value] mv ncbidraw.o ncbidraw.glo mv ncbidraw.tmp ncbidraw.o mv drawing.o drawing.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL drawing.c mv drawing.o drawing.glo mv drawing.tmp drawing.o mv mapping.o mapping.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL mapping.c mapping.c: In function 'Nlm_MapRectToWorldBox': mapping.c:139:8: warning: variable 'curScale' set but not used [-Wunused-but-set-variable] mv mapping.o mapping.glo mv mapping.tmp mapping.o mv picture.o picture.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL picture.c mv picture.o picture.glo mv picture.tmp picture.o mv viewer.o viewer.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL viewer.c mv viewer.o viewer.glo mv viewer.tmp viewer.o mv document.o document.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL document.c document.c: In function 'Nlm_PrintDocument': document.c:4413:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] document.c:4417:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] mv document.o document.glo mv document.tmp document.o mv table.o table.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL table.c table.c: In function 'SetCellRec': table.c:136:9: warning: statement with no effect [-Wunused-value] table.c:138:7: warning: statement with no effect [-Wunused-value] table.c: In function 'GetCellRec': table.c:175:9: warning: statement with no effect [-Wunused-value] table.c:177:7: warning: statement with no effect [-Wunused-value] table.c: In function 'GetColRec': table.c:231:7: warning: statement with no effect [-Wunused-value] table.c: In function 'DrawTable': table.c:314:9: warning: statement with no effect [-Wunused-value] table.c:317:5: warning: statement with no effect [-Wunused-value] table.c:318:5: warning: statement with no effect [-Wunused-value] table.c:319:5: warning: statement with no effect [-Wunused-value] table.c:334:5: warning: statement with no effect [-Wunused-value] table.c: In function 'RecordColumn': table.c:380:5: warning: statement with no effect [-Wunused-value] table.c: In function 'RecordSegment': table.c:428:7: warning: statement with no effect [-Wunused-value] table.c:440:9: warning: statement with no effect [-Wunused-value] table.c:442:7: warning: statement with no effect [-Wunused-value] table.c: In function 'CopyToHandle': table.c:510:7: warning: statement with no effect [-Wunused-value] table.c:518:7: warning: statement with no effect [-Wunused-value] table.c:527:7: warning: statement with no effect [-Wunused-value] table.c: In function 'AppendTableText': table.c:632:7: warning: statement with no effect [-Wunused-value] table.c: In function 'GetTableText': table.c:710:13: warning: statement with no effect [-Wunused-value] table.c:718:11: warning: statement with no effect [-Wunused-value] table.c:727:9: warning: statement with no effect [-Wunused-value] table.c:743:7: warning: statement with no effect [-Wunused-value] table.c: In function 'TableTextLength': table.c:783:13: warning: statement with no effect [-Wunused-value] table.c:791:11: warning: statement with no effect [-Wunused-value] table.c:800:9: warning: statement with no effect [-Wunused-value] table.c: In function 'ResetTable': table.c:1090:5: warning: statement with no effect [-Wunused-value] mv table.o table.glo mv table.tmp table.o mv palette.o palette.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL palette.c palette.c: In function 'DrawPalette': palette.c:116:5: warning: statement with no effect [-Wunused-value] palette.c: In function 'AppendPalette': palette.c:161:5: warning: statement with no effect [-Wunused-value] palette.c: In function 'SetPaletteValue': palette.c:216:7: warning: statement with no effect [-Wunused-value] palette.c: In function 'GetPaletteValue': palette.c:240:7: warning: statement with no effect [-Wunused-value] palette.c: In function 'PaletteClick': palette.c:306:7: warning: statement with no effect [-Wunused-value] mv palette.o palette.glo mv palette.tmp palette.o mv diagnost.o diagnost.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL diagnost.c mv diagnost.o diagnost.glo mv diagnost.tmp diagnost.o mv image.o image.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL image.c image.c: In function 'Nlm_AllocateImage': image.c:207:28: warning: statement with no effect [-Wunused-value] image.c:274:3: warning: statement with no effect [-Wunused-value] image.c: In function 'Nlm_DeleteImage': image.c:691:9: warning: statement with no effect [-Wunused-value] image.c: In function 'Nlm_UnlockPixMapImage': image.c:804:7: warning: statement with no effect [-Wunused-value] image.c: In function 'ShiftXMask': image.c:840:9: warning: suggest parentheses around '+' inside '>>' [-Wparentheses] mv image.o image.glo mv image.tmp image.o mv pictur3d.o pictur3d.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL pictur3d.c mv pictur3d.o pictur3d.glo mv pictur3d.tmp pictur3d.o mv prim3d1.o prim3d1.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL prim3d1.c mv prim3d1.o prim3d1.glo mv prim3d1.tmp prim3d1.o mv prim3d2.o prim3d2.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL prim3d2.c mv prim3d2.o prim3d2.glo mv prim3d2.tmp prim3d2.o mv prim3d3.o prim3d3.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL prim3d3.c mv prim3d3.o prim3d3.glo mv prim3d3.tmp prim3d3.o mv prim3d4.o prim3d4.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL prim3d4.c mv prim3d4.o prim3d4.glo mv prim3d4.tmp prim3d4.o mv prim3d5.o prim3d5.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL prim3d5.c mv prim3d5.o prim3d5.glo mv prim3d5.tmp prim3d5.o mv viewer3d.o viewer3d.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL viewer3d.c viewer3d.c: In function 'DrawViewer3D': viewer3d.c:521:7: warning: statement with no effect [-Wunused-value] viewer3d.c: In function 'Nlm_RedrawPrim3D': viewer3d.c:995:3: warning: statement with no effect [-Wunused-value] mv viewer3d.o viewer3d.glo mv viewer3d.tmp viewer3d.o mv vibmouse.o vibmouse.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL vibmouse.c mv vibmouse.o vibmouse.glo mv vibmouse.tmp vibmouse.o mv netscape.o netscape.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL netscape.c netscape.c: In function 'NS_Obtain_lock': netscape.c:236:10: warning: variable 'waited' set but not used [-Wunused-but-set-variable] mv netscape.o netscape.glo mv netscape.tmp netscape.o mv imagelst.o imagelst.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL imagelst.c mv imagelst.o imagelst.glo mv imagelst.tmp imagelst.o mv treeview.o treeview.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL treeview.c mv treeview.o treeview.glo mv treeview.tmp treeview.o mv shim3d.o shim3d.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL shim3d.c shim3d.c: In function 'OGL_AddCylinder3D': shim3d.c:906:14: warning: unused variable 'iCount' [-Wunused-variable] shim3d.c: In function 'OGL_AddText3D': shim3d.c:1198:22: warning: unused variable 'i' [-Wunused-variable] shim3d.c: In function 'OGL_Zoom_DragMA': shim3d.c:1758:16: warning: unused variable 'OGL_Data' [-Wunused-variable] shim3d.c: In function 'OGL_Hit': shim3d.c:2053:17: warning: left shift count >= width of type [enabled by default] shim3d.c: In function 'write_row_callback': shim3d.c:2911:48: warning: 'end' may be used uninitialized in this function [-Wuninitialized] shim3d.c:2911:48: warning: 'start' may be used uninitialized in this function [-Wuninitialized] shim3d.c: In function 'SetOGLFont': shim3d.c:2369:64: warning: 'closest' may be used uninitialized in this function [-Wuninitialized] shim3d.c:2364:37: warning: 'mindiff' may be used uninitialized in this function [-Wuninitialized] shim3d.c:2357:21: warning: 'list' may be used uninitialized in this function [-Wuninitialized] shim3d.c: In function 'Nlm_AddHalfWorm3D': shim3d.c:3673:31: warning: 'pCz' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3673:31: warning: 'pCy' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3673:31: warning: 'pCx' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3672:31: warning: 'pNz' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3672:31: warning: 'pNy' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3672:31: warning: 'pNx' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3703:48: warning: 'Cz' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3703:41: warning: 'Cy' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3703:34: warning: 'Cx' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3670:48: warning: 'Nz' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3670:41: warning: 'Ny' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3434:6: warning: 'offset' may be used uninitialized in this function [-Wuninitialized] mv shim3d.o shim3d.glo mv shim3d.tmp shim3d.o mv odlbox.o odlbox.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL odlbox.c odlbox.c: In function 'LB_onVScroll': odlbox.c:424:12: warning: variable 'IsGoUp' set but not used [-Wunused-but-set-variable] mv odlbox.o odlbox.glo mv odlbox.tmp odlbox.o rm -f libvibrantOGL.a ar cru libvibrantOGL.a vibbutns.glo vibextra.glo vibfiles.glo vibforms.glo vibgroup.glo viblists.glo vibmenus.glo vibprmpt.glo vibsbars.glo vibslate.glo vibtexts.glo vibutils.glo vibwndws.glo vibmain.glo ncbidraw.glo drawing.glo mapping.glo picture.glo viewer.glo document.glo table.glo palette.glo diagnost.glo image.glo pictur3d.glo prim3d1.glo prim3d2.glo prim3d3.glo prim3d4.glo prim3d5.glo viewer3d.glo vibmouse.glo netscape.glo imagelst.glo treeview.glo shim3d.glo odlbox.glo cp -p libvibrantOGL.a ../lib ranlib ../lib/libvibrantOGL.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF accentr.c accentr.c: In function 'EntrezBiostrucGet': accentr.c:2113:17: warning: unused variable 'retval' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF accutils.c rm -f libncbiacc.a ar cru libncbiacc.a accentr.o accutils.o cp -p libncbiacc.a ../lib ranlib ../lib/libncbiacc.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF drawseq.c drawseq.c: In function 'AddFlatNodeSymbol': drawseq.c:811:7: warning: unused variable 'symbol_height' [-Wunused-variable] drawseq.c: In function 'AddAlignBlocks': drawseq.c:970:7: warning: variable 'c_num' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'AddAlignFeature': drawseq.c:1369:8: warning: unused variable 'ptype' [-Wunused-variable] drawseq.c: In function 'AddAlignmentMismatch': drawseq.c:1523:7: warning: variable 'i_right' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'DrawRestrictionMap': drawseq.c:1811:10: warning: unused variable 'retval' [-Wunused-variable] drawseq.c:1802:15: warning: variable 'center' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'DrawFeatures': drawseq.c:2563:7: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'DrawOneSeqLoc': drawseq.c:3020:10: warning: variable 'show_seq_label' set but not used [-Wunused-but-set-variable] drawseq.c:3009:10: warning: variable 'ends' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'Label_GData': drawseq.c:3439:10: warning: variable 'success' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'DrawEquivAlign': drawseq.c:3594:8: warning: unused variable 'my_gray_color' [-Wunused-variable] drawseq.c: In function 'load_align_label_rectangle': drawseq.c:4352:10: warning: variable 'found_it' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'PicForAlignNode': drawseq.c:4558:18: warning: variable 'min_scale' set but not used [-Wunused-but-set-variable] drawseq.c: At top level: drawseq.c:3511:18: warning: 'get_map_pos' defined but not used [-Wunused-function] drawseq.c:3525:22: warning: 'get_ith_arp' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF dotmatrx.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF fea2seg.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF fstyle.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF smdlg1.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF smdlg2.c smdlg2.c: In function 'Nlm_CreateDlgGroup': smdlg2.c:631:12: warning: variable 'toAlign' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF smdlg3.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF smtools.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF styleman.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF stylemui.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF glbpic.c glbpic.c: In function 'label_linear_mark': glbpic.c:1295:7: warning: unused variable 'tick_len' [-Wunused-variable] glbpic.c: In function 'add_alignment_to_global': glbpic.c:1552:8: warning: variable 'p_val' set but not used [-Wunused-but-set-variable] glbpic.c: At top level: glbpic.c:584:19: warning: 'extract_align_range' defined but not used [-Wunused-function] glbpic.c:1748:16: warning: 'get_print_score' defined but not used [-Wunused-function] glbpic.c: In function 'get_circle_label_align': glbpic.c:2349:2: warning: 'align' may be used uninitialized in this function [-Wuninitialized] glbpic.c: In function 'label_circle_mark': glbpic.c:2470:7: warning: 'first_align' may be used uninitialized in this function [-Wuninitialized] glbpic.c:2441:6: warning: 'p_align' may be used uninitialized in this function [-Wuninitialized] glbpic.c:2483:11: warning: 'first_left' may be used uninitialized in this function [-Wuninitialized] glbpic.c:2469:28: warning: 'first_width' may be used uninitialized in this function [-Wuninitialized] glbpic.c:2473:10: warning: 'first_top' may be used uninitialized in this function [-Wuninitialized] glbpic.c: In function 'add_alignment_to_global': glbpic.c:1739:16: warning: 'g_top' may be used uninitialized in this function [-Wuninitialized] glbpic.c: In function 'Draw_Global': glbpic.c:2177:12: warning: 'seglen' may be used uninitialized in this function [-Wuninitialized] glbpic.c:1943:8: note: 'seglen' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF layout.c layout.c: In function 'LayoutNodeFlat': layout.c:326:24: warning: variable 'prev' set but not used [-Wunused-but-set-variable] layout.c: In function 'layout_uncompressed_group': layout.c:1244:20: warning: variable 'group_stop' set but not used [-Wunused-but-set-variable] layout.c: In function 'LayoutFeatNode': layout.c:1365:17: warning: variable 'y_next' set but not used [-Wunused-but-set-variable] layout.c:1364:17: warning: variable 'labelstyle' set but not used [-Wunused-but-set-variable] layout.c:1363:10: warning: variable 'show_trunc' set but not used [-Wunused-but-set-variable] layout.c:1350:10: warning: variable 'k' set but not used [-Wunused-but-set-variable] layout.c: In function 'LayoutAlignNode': layout.c:2208:7: warning: unused variable 'num' [-Wunused-variable] layout.c: At top level: layout.c:1779:16: warning: 'modify_master_line' defined but not used [-Wunused-function] layout.c: In function 'layout_uncompressed_group': layout.c:1321:14: warning: 'c_fnp' may be used uninitialized in this function [-Wuninitialized] layout.c: In function 'GroupFeatNode': layout.c:636:14: warning: 'prev' may be used uninitialized in this function [-Wuninitialized] layout.c:594:35: note: 'prev' was declared here layout.c: In function 'OrderCdsmRNA': layout.c:963:9: warning: 'm_missed' may be used uninitialized in this function [-Wuninitialized] layout.c:940:15: note: 'm_missed' was declared here layout.c: In function 'LayoutFeatNode': layout.c:1447:7: warning: 'p_right' may be used uninitialized in this function [-Wuninitialized] layout.c:1502:11: warning: 'p_left' may be used uninitialized in this function [-Wuninitialized] layout.c:1461:15: warning: 'height' may be used uninitialized in this function [-Wuninitialized] layout.c: In function 'LayoutAlignNode': layout.c:2215:17: warning: 'next_line' may be used uninitialized in this function [-Wuninitialized] layout.c:2317:27: warning: 'cur_line' may be used uninitialized in this function [-Wuninitialized] layout.c:2248:7: warning: 'next' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF saldist.c saldist.c: In function 'copy_string': saldist.c:1289:12: warning: value computed is not used [-Wunused-value] saldist.c:1302:11: warning: value computed is not used [-Wunused-value] saldist.c: In function 'nss_ref_complength': saldist.c:1479:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] saldist.c:1455:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable] saldist.c:1455:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable] saldist.c: In function 'nss_pw_complength': saldist.c:1572:18: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] saldist.c:1547:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable] saldist.c:1547:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable] saldist.c: In function 'nss_gp_complength': saldist.c:1675:21: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] saldist.c:1640:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable] saldist.c:1640:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable] saldist.c: In function 'SortbySimProc': saldist.c:2139:31: warning: variable 'newsalpd' set but not used [-Wunused-but-set-variable] saldist.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] saldist.c:910:14: warning: 'matrixlst' defined but not used [-Wunused-variable] saldist.c:928:16: warning: 'new_matrice' defined but not used [-Wunused-function] saldist.c:999:13: warning: 'AAcode' defined but not used [-Wunused-function] saldist.c:1080:24: warning: 'FloatLomatrix' defined but not used [-Wunused-function] saldist.c:1853:22: warning: 'scangp_calcul' defined but not used [-Wunused-function] saldist.c: In function 'writematrixhalf.constprop.5': saldist.c:1225:18: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized] saldist.c: In function 'PwDistProc': saldist.c:1151:18: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized] saldist.c:1104:19: note: 'vnp' was declared here saldist.c: In function 'SortbyLenItem': saldist.c:2191:14: warning: 'mink' may be used uninitialized in this function [-Wuninitialized] saldist.c:2172:28: note: 'mink' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF saled.c ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF salfiles.c salfiles.c: In function 'NewFastaRead': salfiles.c:315:30: warning: variable 'lastsegsip' set but not used [-Wunused-but-set-variable] salfiles.c: In function 'ReadAlignmentToStrings': salfiles.c:664:16: warning: unused variable 'nseq' [-Wunused-variable] salfiles.c: In function 'MacawRead': salfiles.c:1257:15: warning: unused variable 'vnp' [-Wunused-variable] salfiles.c: In function 'ReadLocalAlign': salfiles.c:1370:14: warning: variable 'tmp1' set but not used [-Wunused-but-set-variable] salfiles.c: In function 'ImportFromFile': salfiles.c:2072:20: warning: unused variable 'sep' [-Wunused-variable] salfiles.c:2071:20: warning: unused variable 'sap' [-Wunused-variable] salfiles.c: In function 'sesp_to_pept': salfiles.c:2713:18: warning: unused variable 'bufferPtr' [-Wunused-variable] salfiles.c: In function 'SaveFeatProc': salfiles.c:3387:22: warning: variable 'handled' set but not used [-Wunused-but-set-variable] salfiles.c: In function 'CCReadAnythingLoop': salfiles.c:3685:16: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] salfiles.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] salfiles.c:501:19: warning: 'get_lens_fromseqalign' defined but not used [-Wunused-function] salfiles.c: In function 'CCDownloadProc': salfiles.c:2363:9: warning: 'new_sep' may be used uninitialized in this function [-Wuninitialized] salfiles.c: In function 'NewFastaRead.constprop.15': salfiles.c:460:6: warning: 'sip' may be used uninitialized in this function [-Wuninitialized] salfiles.c: In function 'GapFastaRead': salfiles.c:747:25: warning: 'seqstr' may be used uninitialized in this function [-Wuninitialized] salfiles.c:654:16: note: 'seqstr' was declared here salfiles.c:724:15: warning: 'startp' may be used uninitialized in this function [-Wuninitialized] salfiles.c:660:16: note: 'startp' was declared here salfiles.c: In function 'ReadLocalAlignment': salfiles.c:1284:10: warning: 'seqvnp' may be used uninitialized in this function [-Wuninitialized] salfiles.c:1113:19: note: 'seqvnp' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF salpanel.c salpanel.c: In function 'go_to_next_to_draw': salpanel.c:330:17: warning: statement with no effect [-Wunused-value] salpanel.c: In function 'next_to_draw': salpanel.c:470:20: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] salpanel.c: In function 'AssociatePropagatedSubloc': salpanel.c:3130:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] salpanel.c: In function 'FeaturePropagateForm': salpanel.c:4577:15: warning: variable 'ppt' set but not used [-Wunused-but-set-variable] salpanel.c:4572:15: warning: variable 'b' set but not used [-Wunused-but-set-variable] salpanel.c: In function 'OkToContinueWithFeatureApply': salpanel.c:6006:14: warning: unused variable 'num_missing' [-Wunused-variable] salpanel.c: In function 'DoApplyFeatureToAlignment': salpanel.c:6122:31: warning: unused variable 'found_null' [-Wunused-variable] salpanel.c: In function 'ApplyFeatureToAlignment': salpanel.c:6324:31: warning: variable 'b' set but not used [-Wunused-but-set-variable] salpanel.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] salpanel.c:64:14: warning: 'diamondSym' defined but not used [-Wunused-variable] salpanel.c:67:14: warning: 'ovalSym' defined but not used [-Wunused-variable] salpanel.c:76:14: warning: 'upTriSym' defined but not used [-Wunused-variable] salpanel.c:79:14: warning: 'downTriSym' defined but not used [-Wunused-variable] salpanel.c:85:14: warning: 'diamondFillSym' defined but not used [-Wunused-variable] salpanel.c:88:14: warning: 'ovalFillSym' defined but not used [-Wunused-variable] salpanel.c:97:14: warning: 'upTriFillSym' defined but not used [-Wunused-variable] salpanel.c:100:14: warning: 'downTriFillSym' defined but not used [-Wunused-variable] salpanel.c:103:14: warning: 'rightOvalSym' defined but not used [-Wunused-variable] salpanel.c:106:14: warning: 'leftOvalSym' defined but not used [-Wunused-variable] salpanel.c:109:14: warning: 'rightOvalFillSym' defined but not used [-Wunused-variable] salpanel.c:112:14: warning: 'leftOvalFillSym' defined but not used [-Wunused-variable] salpanel.c:223:13: warning: 'get_client_rectxy' defined but not used [-Wunused-function] salpanel.c:4962:13: warning: 'BatchApplyFeatureDetailsMessage' defined but not used [-Wunused-function] salpanel.c: In function 'draw_feat.isra.22.part.23': salpanel.c:2182:13: warning: 'col1' may be used uninitialized in this function [-Wuninitialized] salpanel.c: In function 'on_draw': salpanel.c:2598:31: warning: 'draw_diff' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF salparam.c salparam.c: In function 'mergelst': salparam.c:1325:20: warning: variable 'val' set but not used [-Wunused-but-set-variable] salparam.c: In function 'unmergelst': salparam.c:1340:20: warning: variable 'dbdp' set but not used [-Wunused-but-set-variable] salparam.c: In function 'FormulaDialog': salparam.c:1398:36: warning: variable 'b5' set but not used [-Wunused-but-set-variable] salparam.c: In function 'JK_NTPattern2Ex': salparam.c:1596:19: warning: variable 'debug_str' set but not used [-Wunused-but-set-variable] salparam.c: In function 'DotPlotBtn': salparam.c:1936:22: warning: variable 'status' set but not used [-Wunused-but-set-variable] salparam.c: In function 'DotPlotDialog': salparam.c:1973:20: warning: variable 'bt1' set but not used [-Wunused-but-set-variable] salparam.c: In function 'DotPlotItem': salparam.c:2004:22: warning: variable 'status' set but not used [-Wunused-but-set-variable] salparam.c: In function 'SelectSeqFunc': salparam.c:2308:20: warning: variable 'str' set but not used [-Wunused-but-set-variable] salparam.c: In function 'HighlightSelectionFunc': salparam.c:2344:22: warning: variable 'wdp' set but not used [-Wunused-but-set-variable] salparam.c: In function 'PropagateFeatureProc': salparam.c:2623:25: warning: variable 'iID' set but not used [-Wunused-but-set-variable] salparam.c:2614:20: warning: variable 'salp' set but not used [-Wunused-but-set-variable] salparam.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] salparam.c: In function 'FileInProc': salparam.c:782:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] salparam.c: In function 'DotPlotBtn': salparam.c:1950:25: warning: 'sep' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF salsa.c salsa.c: In function 'SelectSubsProc': salsa.c:2140:23: warning: variable 'svpp' set but not used [-Wunused-but-set-variable] salsa.c: In function 'SetSeqInfo': salsa.c:3195:17: warning: unused variable 'vnp' [-Wunused-variable] salsa.c: In function 'SetupAlignDataSap': salsa.c:3410:16: warning: variable 'entityID_sap' set but not used [-Wunused-but-set-variable] salsa.c: In function 'get_bestpos_formerge': salsa.c:4304:17: warning: variable 'insert_after' set but not used [-Wunused-but-set-variable] salsa.c:4303:17: warning: variable 'insert_before' set but not used [-Wunused-but-set-variable] salsa.c: In function 'CreateSeqAlignViewForm': salsa.c:4689:22: warning: variable 'mergebtn' set but not used [-Wunused-but-set-variable] salsa.c: In function 'AlgEditFunc': salsa.c:4988:23: warning: unused variable 'wdp' [-Wunused-variable] salsa.c:4986:23: warning: unused variable 'w' [-Wunused-variable] salsa.c: In function 'OldAlignmentEditor': salsa.c:5118:16: warning: variable 'rval' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAnnotAlignEditor': salsa.c:5305:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAlignEditor': salsa.c:5322:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAlignViewer': salsa.c:5339:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAlignEditorFromDesktop': salsa.c:5354:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAlignEditorFromDesktop2': salsa.c:5371:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAlignEditorFromDesktop3': salsa.c:5390:20: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAlignEditorFromDesktop4': salsa.c:5417:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable] salsa.c: In function 'InsertSeqProc': salsa.c:5587:17: warning: variable 'cnclbt' set but not used [-Wunused-but-set-variable] salsa.c:5585:10: warning: variable 'insprt' set but not used [-Wunused-but-set-variable] salsa.c: In function 'SeqAlignBestHit': salsa.c:5654:22: warning: variable 'last' set but not used [-Wunused-but-set-variable] salsa.c: In function 'SeqAlignStartUpdate': salsa.c:5839:22: warning: variable 'k' set but not used [-Wunused-but-set-variable] salsa.c:5838:15: warning: variable 'start' set but not used [-Wunused-but-set-variable] salsa.c:5837:15: warning: variable 'len_sum' set but not used [-Wunused-but-set-variable] salsa.c:5834:15: warning: variable 'lenp' set but not used [-Wunused-but-set-variable] salsa.c:5833:15: warning: variable 'pre' set but not used [-Wunused-but-set-variable] salsa.c: In function 'CCNormalizeSeqAlignId': salsa.c:6788:23: warning: unused variable 'gi' [-Wunused-variable] salsa.c:6787:17: warning: unused variable 'missing_fmt' [-Wunused-variable] salsa.c:6786:17: warning: unused variable 'missing_cont_fmt' [-Wunused-variable] salsa.c: In function 'ValidateSeqAlignandACCEx': salsa.c:7145:16: warning: variable 'ans' set but not used [-Wunused-but-set-variable] salsa.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/salprop.h:50:16: warning: 'GBFeat' defined but not used [-Wunused-variable] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] salsa.c:87:13: warning: 'InsertSequenceDlg' declared 'static' but never defined [-Wunused-function] salsa.c:1760:13: warning: 'AcceptCloseWindowButton' defined but not used [-Wunused-function] salsa.c:2356:13: warning: 'MakeCdRgnProc' defined but not used [-Wunused-function] salsa.c:2360:13: warning: 'MakeCdRgnrProc' defined but not used [-Wunused-function] salsa.c:4884:16: warning: 'DeltaLitOnly' defined but not used [-Wunused-function] salsa.c:6021:13: warning: 'SWPrintFarpointerAln' defined but not used [-Wunused-function] salsa.c: In function 'ExportFASTAForUnselectedUpdates': salsa.c:6417:13: warning: 'fp' may be used uninitialized in this function [-Wuninitialized] salsa.c: In function 'ExportBadAlignments': salsa.c:6390:13: warning: 'fp' may be used uninitialized in this function [-Wuninitialized] salsa.c: In function 'SeqAlignBestHit.isra.3': salsa.c:5795:23: warning: 'nctr' may be used uninitialized in this function [-Wuninitialized] salsa.c:5797:24: warning: 'end' may be used uninitialized in this function [-Wuninitialized] salsa.c:5797:24: warning: 'beg' may be used uninitialized in this function [-Wuninitialized] salsa.c: In function 'BioseqEditMsgFunc': salsa.c:912:51: warning: 'anp' may be used uninitialized in this function [-Wuninitialized] salsa.c:890:20: note: 'anp' was declared here salsa.c: In function 'DeleteProc': salsa.c:1945:14: warning: 'sap' may be used uninitialized in this function [-Wuninitialized] salsa.c: In function 'SkipThisWindowProc': salsa.c:4591:23: warning: 'salp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF seqfltr.c seqfltr.c: In function 'FilterSeq': seqfltr.c:259:21: warning: 'fptr' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF seqgraph.c seqgraph.c: In function 'EndPointDialogToEndPointValNode': seqgraph.c:140:3: warning: 'eplist' may be used uninitialized in this function [-Wuninitialized] seqgraph.c: In function 'SeqLocGraphViewProc': seqgraph.c:1136:9: warning: 'eplist' may be used uninitialized in this function [-Wuninitialized] seqgraph.c: In function 'MarkPrims': seqgraph.c:911:11: warning: 'fval' may be used uninitialized in this function [-Wuninitialized] seqgraph.c: In function 'CutOffProc': seqgraph.c:1018:9: warning: 'eplist' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF seqgrphx.c seqgrphx.c:28:25: warning: 'MatrixMsgFunc' defined but not used [-Wunused-function] seqgrphx.c: In function 'FilterMsgFunc': seqgrphx.c:224:12: warning: 's' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF seqmtrx.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF seqpcc.c seqpcc.c: In function 'PCCProc': seqpcc.c:229:6: warning: 'pbsp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF seqanal.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF aacomp.c aacomp.c:86:20: warning: 'AACGraph' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF seqscrl.c seqscrl.c: In function 'SeqScrollDataFree': seqscrl.c:46:5: warning: value computed is not used [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF valdlg.c valdlg.c: In function 'ClickRulesDoc': valdlg.c:373:22: warning: unused variable 'scroll_pos' [-Wunused-variable] valdlg.c:372:22: warning: unused variable 'sb_vert' [-Wunused-variable] valdlg.c: In function 'UpdateRuleList': valdlg.c:479:26: warning: unused variable 'last_cr' [-Wunused-variable] valdlg.c: In function 'SaveRuleChanges': valdlg.c:540:23: warning: variable 'dlg' set but not used [-Wunused-but-set-variable] valdlg.c: In function 'LaunchCommentRulesEditor': valdlg.c:553:23: warning: unused variable 'm' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF vsm.c vsm.c: In function 'VSMAboutProc': vsm.c:1492:8: warning: variable 'p' set but not used [-Wunused-but-set-variable] vsm.c: In function 'VSeqMgrCreateMainWindow': vsm.c:1601:12: warning: variable 'omp' set but not used [-Wunused-but-set-variable] vsm.c: In function 'VSeqMgrPopulateMain': vsm.c:1742:13: warning: variable 'atp' set but not used [-Wunused-but-set-variable] vsm.c: In function 'VSMGatherPictProc': vsm.c:2225:15: warning: variable 'bssp' set but not used [-Wunused-but-set-variable] vsm.c:2220:30: warning: variable 'bottom' set but not used [-Wunused-but-set-variable] vsm.c: In function 'VSMAddPictureToEntity': vsm.c:2853:10: warning: variable 'ptr' set but not used [-Wunused-but-set-variable] vsm.c:2852:13: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF vsmfile.c vsmfile.c: In function 'VSMGenericBinAsnOpen': vsmfile.c:259:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] vsmfile.c: In function 'VSMGenericFastaSave': vsmfile.c:395:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] vsmfile.c: In function 'VSMFastaProtSaveWithProduct': vsmfile.c:527:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] vsmfile.c: In function 'VSMSaveSetsAsFiles': vsmfile.c:1365:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF vsmutil.c vsmutil.c:387:20: warning: 'GetSeqDescGivenIDs' defined but not used [-Wunused-function] vsmutil.c:1567:16: warning: 'MakeFieldReports' defined but not used [-Wunused-function] vsmutil.c: In function 'ContinueProc': vsmutil.c:2100:19: warning: array subscript is above array bounds [-Warray-bounds] vsmutil.c: In function 'SetVerbosityAndRepopulate': vsmutil.c:2141:19: warning: array subscript is above array bounds [-Warray-bounds] vsmutil.c: In function 'RevalidateProc': vsmutil.c:2067:19: warning: array subscript is above array bounds [-Warray-bounds] vsmutil.c: In function 'ClearValidateWindow': vsmutil.c:613:21: warning: array subscript is above array bounds [-Warray-bounds] vsmutil.c: In function 'CreateValidateWindowExExEx': vsmutil.c:2464:23: warning: array subscript is above array bounds [-Warray-bounds] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF udvgraph.c udvgraph.c: In function 'UDV_click_item': udvgraph.c:877:9: warning: unused variable 'IsTransNeeded' [-Wunused-variable] udvgraph.c: In function 'UDV_SendBSPSelectMsg': udvgraph.c:1230:13: warning: variable 'bDeselectAll' set but not used [-Wunused-but-set-variable] udvgraph.c:1226:30: warning: variable 'bsp_coord_old' set but not used [-Wunused-but-set-variable] udvgraph.c: In function 'UDV_draw_helixDNA': udvgraph.c:1827:15: warning: variable 'cyChar_2' set but not used [-Wunused-but-set-variable] udvgraph.c: In function 'draw_logo': udvgraph.c:1940:38: warning: variable 'cyGlobal' set but not used [-Wunused-but-set-variable] udvgraph.c: In function 'UDV_draw_CDS_minus': udvgraph.c:2337:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable] udvgraph.c:2332:5: warning: variable 'numivals2' set but not used [-Wunused-but-set-variable] udvgraph.c: In function 'UDV_draw_CDS_plus': udvgraph.c:2461:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable] udvgraph.c: In function 'UDV_draw_panel': udvgraph.c:4041:21: warning: unused variable 'vnp_seqinfo' [-Wunused-variable] udvgraph.c:4035:45: warning: variable 'nLinesDraw' set but not used [-Wunused-but-set-variable] udvgraph.c:4035:37: warning: variable 'nTotRow' set but not used [-Wunused-but-set-variable] udvgraph.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] udvgraph.c:948:13: warning: 'UDV_draw_vert_cursor' defined but not used [-Wunused-function] udvgraph.c:971:14: warning: 'UDV_draw_horz_cursor' defined but not used [-Wunused-function] udvgraph.c:1298:13: warning: 'UDV_AutoSelectAllSeq' defined but not used [-Wunused-function] udvgraph.c:3433:14: warning: 'UDV_Draw_features_label' defined but not used [-Wunused-function] udvgraph.c:3921:14: warning: 'UDV_calc_decalRC' defined but not used [-Wunused-function] udvgraph.c: In function 'UDV_GetCurrentDispRange': udvgraph.c:638:15: warning: 'pgp' may be used uninitialized in this function [-Wuninitialized] udvgraph.c: In function 'UDV_Draw_features': udvgraph.c:3203:45: warning: 'idx6' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3203:24: warning: 'idx5' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3196:11: warning: 'idx4' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3189:45: warning: 'idx3' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3189:24: warning: 'idx2' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3182:12: warning: 'idx1' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3226:11: warning: 'stop_x2' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3226:11: warning: 'stop_x' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3226:10: warning: 'y' may be used uninitialized in this function [-Wuninitialized] udvgraph.c: In function 'UDV_ClickProc': udvgraph.c:1461:31: warning: 'vmp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF udvopen.c udvopen.c: In function 'UDV_FileOpen': udvopen.c:875:16: warning: variable 'b2' set but not used [-Wunused-but-set-variable] udvopen.c:875:11: warning: variable 'b' set but not used [-Wunused-but-set-variable] udvopen.c: In function 'UDV_CreateListBioseqDlg': udvopen.c:1180:9: warning: the address of 'szName' will always evaluate as 'true' [-Waddress] udvopen.c: In function 'UDV_FOpenCancelProc': udvopen.c:792:23: warning: 'vmp' may be used uninitialized in this function [-Wuninitialized] udvopen.c: In function 'UDV_analyze_SEP_for_open': udvopen.c:325:15: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized] udvopen.c:327:14: warning: 'dataptr' may be used uninitialized in this function [-Wuninitialized] udvopen.c: In function 'UDV_FOpenAcceptProc': udvopen.c:855:23: warning: 'vmp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF udvpanel.c udvpanel.c: In function 'UDV_GotoBtnProc': udvpanel.c:2080:22: warning: variable 'old_ivalue' set but not used [-Wunused-but-set-variable] udvpanel.c:2079:15: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] udvpanel.c: In function 'CreateMainControls': udvpanel.c:2165:8: warning: variable 'cxChar' set but not used [-Wunused-but-set-variable] udvpanel.c: In function 'UDV_SearchFeatForKey': udvpanel.c:3478:14: warning: variable 'b2' set but not used [-Wunused-but-set-variable] udvpanel.c: At top level: udvpanel.c:2773:28: warning: 'FeaturesListBoxScan' defined but not used [-Wunused-function] udvpanel.c: In function 'InitFeaturesListDlg': udvpanel.c:3301:16: warning: 'pop' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF dotvibrant.c dotvibrant.c: In function 'DOT_DisplayHits': dotvibrant.c:561:18: warning: variable 'ycomp' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_VscrlProc': dotvibrant.c:915:16: warning: variable 'visLines' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_HscrlProc': dotvibrant.c:969:20: warning: variable 'visLines' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_VCrossHairs': dotvibrant.c:1399:10: warning: unused variable 'cursor_size' [-Wunused-variable] dotvibrant.c: In function 'DOT_HCrossHairs': dotvibrant.c:1424:9: warning: unused variable 'cursor_size' [-Wunused-variable] dotvibrant.c: In function 'DOT_MoveCrossHairs': dotvibrant.c:1450:18: warning: variable 'data' set but not used [-Wunused-but-set-variable] dotvibrant.c:1449:10: warning: unused variable 'cursor_size' [-Wunused-variable] dotvibrant.c: In function 'DOT_DrawXAxis': dotvibrant.c:1529:38: warning: unused variable 'title' [-Wunused-variable] dotvibrant.c: In function 'DOT_DrawYAxis': dotvibrant.c:1639:38: warning: unused variable 'title' [-Wunused-variable] dotvibrant.c:1638:55: warning: variable 'Fh_4' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_SVDisplayDiags': dotvibrant.c:1767:28: warning: variable 'aln_diag' set but not used [-Wunused-but-set-variable] dotvibrant.c:1767:22: warning: variable 'diag' set but not used [-Wunused-but-set-variable] dotvibrant.c:1763:22: warning: variable 'width' set but not used [-Wunused-but-set-variable] dotvibrant.c:1762:31: warning: variable 'p_HFrom' set but not used [-Wunused-but-set-variable] dotvibrant.c:1762:22: warning: variable 'p_VFrom' set but not used [-Wunused-but-set-variable] dotvibrant.c:1759:28: warning: unused variable 'cutoff' [-Wunused-variable] dotvibrant.c:1757:34: warning: variable 'seg3' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_FillNewSeqBufs': dotvibrant.c:2194:19: warning: unused variable 'alp' [-Wunused-variable] dotvibrant.c: In function 'DOT_InitCInfo': dotvibrant.c:2255:14: warning: unused variable 'colBuf' [-Wunused-variable] dotvibrant.c: In function 'DOT_SVDisplaySequence': dotvibrant.c:2376:16: warning: variable 'matrix' set but not used [-Wunused-but-set-variable] dotvibrant.c:2364:14: warning: variable 'vis_2' set but not used [-Wunused-but-set-variable] dotvibrant.c:2361:14: warning: unused variable 'prot_threshold' [-Wunused-variable] dotvibrant.c:2347:24: warning: variable 'mip2' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_SVClickProc': dotvibrant.c:2804:17: warning: unused variable 'handled' [-Wunused-variable] dotvibrant.c: In function 'DOT_SVPopulateDiagViewer': dotvibrant.c:2876:11: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat] dotvibrant.c: In function 'DOT_ResizeFeatWindow': dotvibrant.c:3013:63: warning: variable 'SubjectHeight' set but not used [-Wunused-but-set-variable] dotvibrant.c:3013:51: warning: variable 'QueryHeight' set but not used [-Wunused-but-set-variable] dotvibrant.c:3013:37: warning: variable 'gap' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_ResizeSequenceWindow': dotvibrant.c:3095:25: warning: variable 'is_visible2' set but not used [-Wunused-but-set-variable] dotvibrant.c:3095:12: warning: variable 'is_visible1' set but not used [-Wunused-but-set-variable] dotvibrant.c:3092:51: warning: variable 'V1Height' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_HideFeatDlg': dotvibrant.c:3742:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_SVBuildDiagViewer': dotvibrant.c:4028:18: warning: variable 'mip' set but not used [-Wunused-but-set-variable] dotvibrant.c:4026:28: warning: unused variable 'str2' [-Wunused-variable] dotvibrant.c:4026:13: warning: unused variable 'str1' [-Wunused-variable] dotvibrant.c:4019:18: warning: variable 'pr2' set but not used [-Wunused-but-set-variable] dotvibrant.c:4019:13: warning: variable 'pr1' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_UpdateDataRects': dotvibrant.c:4163:19: warning: variable 'dy' set but not used [-Wunused-but-set-variable] dotvibrant.c:4163:15: warning: variable 'dx' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_MsgFunc': dotvibrant.c:4212:17: warning: variable 'vdp2' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_ReleaseProc': dotvibrant.c:4370:32: warning: unused variable 'yaxis_incr' [-Wunused-variable] dotvibrant.c:4370:15: warning: unused variable 'xaxis_incr' [-Wunused-variable] dotvibrant.c:4368:19: warning: variable 'alp' set but not used [-Wunused-but-set-variable] dotvibrant.c:4367:18: warning: variable 'mip1' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_StartDOTPLOT': dotvibrant.c:4888:23: warning: variable 'vdp' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_SetupParamsWindow': dotvibrant.c:4965:5: warning: too many arguments for format [-Wformat-extra-args] dotvibrant.c:4967:5: warning: too many arguments for format [-Wformat-extra-args] dotvibrant.c: In function 'DOT_DoZoom': dotvibrant.c:5103:18: warning: variable 'data' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_ZoomProc': dotvibrant.c:5201:23: warning: variable 'temport' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'AlnMgr2GetNextLine': dotvibrant.c:5312:3: warning: value computed is not used [-Wunused-value] dotvibrant.c: In function 'DOT_GetAlign': dotvibrant.c:5329:44: warning: variable 'n' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_FillAlignInfoPointer': dotvibrant.c:5562:16: warning: unused variable 'i' [-Wunused-variable] dotvibrant.c: In function 'DOT_Prob_FillAlignInfoPointer': dotvibrant.c:5678:16: warning: unused variable 'i' [-Wunused-variable] dotvibrant.c:5677:16: warning: unused variable 'numsaps' [-Wunused-variable] dotvibrant.c:5675:37: warning: unused variable 'sap_tmp' [-Wunused-variable] dotvibrant.c: In function 'DOT_DoBlast': dotvibrant.c:5915:23: warning: unused variable 'eval' [-Wunused-variable] dotvibrant.c:5914:23: warning: variable 'is_local' set but not used [-Wunused-but-set-variable] dotvibrant.c:5912:23: warning: unused variable 'entityID' [-Wunused-variable] dotvibrant.c: In function 'DOT_CreateWindowDetails': dotvibrant.c:6211:27: warning: variable 'pr2' set but not used [-Wunused-but-set-variable] dotvibrant.c:6211:22: warning: variable 'pr1' set but not used [-Wunused-but-set-variable] dotvibrant.c:6204:21: warning: variable 'g1' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_ResizeMainWindow': dotvibrant.c:6270:35: warning: variable 'gap' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_FindAlignment': dotvibrant.c:6659:29: warning: unused variable 'rb_fixed' [-Wunused-variable] dotvibrant.c:6659:13: warning: unused variable 'lt_fixed' [-Wunused-variable] dotvibrant.c:6658:17: warning: variable 'data' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'SCP_CompareOrderOrganizeBioseqs': dotvibrant.c:6789:25: warning: variable 'itemID' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'SCP_OrganizeAlnsInSet': dotvibrant.c:6870:21: warning: variable 'indextype' set but not used [-Wunused-but-set-variable] dotvibrant.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] dotvibrant.c:2757:16: warning: 'DOT_SVGetDiag' defined but not used [-Wunused-function] dotvibrant.c:2951:13: warning: 'DOT_SVChangeLabels' defined but not used [-Wunused-function] dotvibrant.c:3315:13: warning: 'DOT_AddFeatureToSegment' defined but not used [-Wunused-function] dotvibrant.c:3685:13: warning: 'DOT_HideAcceptProc' defined but not used [-Wunused-function] dotvibrant.c:4210:25: warning: 'DOT_MsgFunc' defined but not used [-Wunused-function] dotvibrant.c:4746:13: warning: 'DOT_GetInfoProc' defined but not used [-Wunused-function] dotvibrant.c:4764:13: warning: 'DOT_FeatAnalysisProc' defined but not used [-Wunused-function] dotvibrant.c:5278:16: warning: 'AlnMgr2GetNextLine' defined but not used [-Wunused-function] dotvibrant.c:5322:16: warning: 'DOT_GetAlign' defined but not used [-Wunused-function] dotvibrant.c:5891:16: warning: 'DOT_get_eval' defined but not used [-Wunused-function] dotvibrant.c:6343:13: warning: 'DOT_NewAnalysis' defined but not used [-Wunused-function] dotvibrant.c:6639:16: warning: 'DOT_DeselectPrim' defined but not used [-Wunused-function] dotvibrant.c: In function 'DOT_GetNthSeqFromAlign': dotvibrant.c:5069:11: warning: 'spp' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c: In function 'DOT_SVPopulateSequenceViewer': dotvibrant.c:2608:32: warning: 'strand2' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2377:23: note: 'strand2' was declared here dotvibrant.c:2608:32: warning: 'strand1' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2377:14: note: 'strand1' was declared here dotvibrant.c:2580:37: warning: 'residue_names' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2375:16: note: 'residue_names' was declared here dotvibrant.c:2608:32: warning: 's_pos' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2367:42: note: 's_pos' was declared here dotvibrant.c:2608:32: warning: 'q_pos' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2367:35: note: 'q_pos' was declared here dotvibrant.c:2501:11: warning: 'hit_stop' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2367:25: note: 'hit_stop' was declared here dotvibrant.c:2611:32: warning: 'hit_start' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2367:14: note: 'hit_start' was declared here dotvibrant.c:2500:16: warning: 'buf_len' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2364:21: note: 'buf_len' was declared here dotvibrant.c:2542:18: warning: 'is_na' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2358:27: note: 'is_na' was declared here dotvibrant.c:2500:6: warning: 's' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2354:14: note: 's' was declared here dotvibrant.c:2623:16: warning: 'q' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2353:14: note: 'q' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF dlgutil1.c dlgutil1.c: In function 'IsAuthList': dlgutil1.c:2850:8: warning: variable 'len' set but not used [-Wunused-but-set-variable] dlgutil1.c: In function 'TestIntervalEditor': dlgutil1.c:5092:20: warning: variable 'fuzz_to' set but not used [-Wunused-but-set-variable] dlgutil1.c:5091:20: warning: variable 'fuzz_from' set but not used [-Wunused-but-set-variable] dlgutil1.c:5090:41: warning: variable 'fuzz_before' set but not used [-Wunused-but-set-variable] dlgutil1.c: In function 'CreateStandardEditMenu': dlgutil1.c:8963:8: warning: variable 'i' set but not used [-Wunused-but-set-variable] dlgutil1.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] dlgutil1.c:7835:16: warning: 'ParseSpecimenVoucherOk' defined but not used [-Wunused-function] dlgutil1.c:8152:25: warning: 'GetNthNameValuePair' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF dlgutil2.c dlgutil2.c: In function 'CreateImportFields': dlgutil2.c:1400:19: warning: variable 'is_gap' set but not used [-Wunused-but-set-variable] dlgutil2.c: In function 'UpdateTableDisplayDialogScrollBars': dlgutil2.c:3512:11: warning: variable 'y' set but not used [-Wunused-but-set-variable] dlgutil2.c:3512:8: warning: variable 'x' set but not used [-Wunused-but-set-variable] dlgutil2.c: In function 'GetTableDisplayCell': dlgutil2.c:3840:8: warning: variable 'start_row' set but not used [-Wunused-but-set-variable] dlgutil2.c: In function 'NewCreateInferenceDialog': dlgutil2.c:7229:19: warning: variable 'fnt' set but not used [-Wunused-but-set-variable] dlgutil2.c: In function 'ClickableListOnKey': dlgutil2.c:9789:20: warning: variable 'clp' set but not used [-Wunused-but-set-variable] dlgutil2.c: In function 'GetSelectedClickableListText': dlgutil2.c:10423:36: warning: variable 'char_offset' set but not used [-Wunused-but-set-variable] dlgutil2.c: In function 'AutomatchFeatures': dlgutil2.c:13387:36: warning: variable 's3' set but not used [-Wunused-but-set-variable] dlgutil2.c: At top level: dlgutil2.c:1672:16: warning: 'GetNameForFeature' defined but not used [-Wunused-function] dlgutil2.c:8206:13: warning: 'GetCategoryNumFromName' defined but not used [-Wunused-function] dlgutil2.c:9627:13: warning: 'DrawClickableListItem' defined but not used [-Wunused-function] dlgutil2.c:9647:13: warning: 'ClickClickableListItem' defined but not used [-Wunused-function] dlgutil2.c:11542:16: warning: 'ParseMultiListQualOk' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF e2trmlst.c e2trmlst.c: In function 'ReadAFew': e2trmlst.c:2230:61: warning: left-hand operand of comma expression has no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF e2docsum.c e2docsum.c: In function 'FormatDocsum': e2docsum.c:1020:5: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Uint4' [-Wformat] e2docsum.c: In function 'FormatCdsSeq': e2docsum.c:1523:22: warning: variable 'gene' set but not used [-Wunused-but-set-variable] e2docsum.c: In function 'FetchSequence': e2docsum.c:1591:16: warning: variable 'currDbName' set but not used [-Wunused-but-set-variable] e2docsum.c:1580:16: warning: variable 'group_segs' set but not used [-Wunused-but-set-variable] e2docsum.c: In function 'SaveDocsumProject': e2docsum.c:3606:16: warning: variable 'sfp' set but not used [-Wunused-but-set-variable] e2docsum.c: In function 'RetrieveGeneration': e2docsum.c:4135:19: warning: variable 'e2ip' set but not used [-Wunused-but-set-variable] e2docsum.c: In function 'SetupMenus': e2docsum.c:4849:16: warning: variable 'c' set but not used [-Wunused-but-set-variable] e2docsum.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] e2docsum.c:2154:20: warning: 'cddDocProcs' defined but not used [-Wunused-variable] e2docsum.c:2850:13: warning: 'GetBiostrucComplexity' defined but not used [-Wunused-function] e2docsum.c:2883:13: warning: 'GetBiostrucMaxModels' defined but not used [-Wunused-function] e2docsum.c: In function 'LaunchStructureViewer': e2docsum.c:2981:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] e2docsum.c: In function 'LaunchSequin': e2docsum.c:2838:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF asn2graphic.c asn2graphic.c: In function 'ParseFilterItem': asn2graphic.c:1191:21: warning: variable 'j' set but not used [-Wunused-but-set-variable] asn2graphic.c: In function 'GeneProductsLayoutInternal': asn2graphic.c:3730:36: warning: variable 'featureStart' set but not used [-Wunused-but-set-variable] asn2graphic.c: In function 'ScaleSntDrawProc': asn2graphic.c:4401:28: warning: variable 'r' set but not used [-Wunused-but-set-variable] asn2graphic.c: In function 'GphSentProc': asn2graphic.c:4996:16: warning: variable 'scaleY' set but not used [-Wunused-but-set-variable] asn2graphic.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] asn2graphic.c: In function 'ProcessRows': asn2graphic.c:4361:37: warning: 'SegmentTreeBot' may be used uninitialized in this function [-Wuninitialized] asn2graphic.c:4353:24: warning: 'SegmentTreeMid' may be used uninitialized in this function [-Wuninitialized] asn2graphic.c:4349:24: warning: 'SegmentTreeTop' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF medview.c medview.c: In function 'PrintMedlineViewForm': medview.c:588:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF bspview.c ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF gbfview.c gbfview.c: In function 'RelModeFailText': gbfview.c:1000:22: warning: variable 'hasPubs' set but not used [-Wunused-but-set-variable] gbfview.c: In function 'PopulateFlatFile': gbfview.c:1285:22: warning: variable 'doColors' set but not used [-Wunused-but-set-variable] gbfview.c: In function 'PopulateFasta': gbfview.c:1710:33: warning: left-hand operand of comma expression has no effect [-Wunused-value] gbfview.c:1642:20: warning: variable 'group_segs' set but not used [-Wunused-but-set-variable] gbfview.c: In function 'PopulateAsnOrXML': gbfview.c:1965:16: warning: variable 'lookupFar' set but not used [-Wunused-but-set-variable] gbfview.c:1964:16: warning: variable 'lockFar' set but not used [-Wunused-but-set-variable] gbfview.c: At top level: gbfview.c:289:16: warning: 'ColorIcon' defined but not used [-Wunused-function] gbfview.c:940:13: warning: 'LookForPubs' defined but not used [-Wunused-function] gbfview.c:1208:13: warning: 'LookForFarBsp' defined but not used [-Wunused-function] gbfview.c:1227:13: warning: 'LookForFarProds' defined but not used [-Wunused-function] gbfview.c: In function 'ReleaseIcon': gbfview.c:663:28: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] gbfview.c: In function 'PrintFlatFileFastaOrAsn': gbfview.c:2487:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF gphview.c gphview.c: In function 'ReleaseAlignment': gphview.c:1306:18: warning: variable 'slp' set but not used [-Wunused-but-set-variable] gphview.c: In function 'DrawAlignOnAllSequences': gphview.c:1391:10: warning: variable 'vn' set but not used [-Wunused-but-set-variable] gphview.c: In function 'ReleaseDesktop': gphview.c:1836:18: warning: variable 'seg' set but not used [-Wunused-but-set-variable] gphview.c: In function 'AutoScrollGeneName': gphview.c:2100:21: warning: variable 'num' set but not used [-Wunused-but-set-variable] gphview.c: In function 'DisplayGeneChoiceWindow': gphview.c:2426:22: warning: variable 'p' set but not used [-Wunused-but-set-variable] gphview.c: In function 'PrintGraphical': gphview.c:3268:14: warning: unused variable 'ans' [-Wunused-variable] gphview.c: In function 'PopulateAsn2GphGraphic': gphview.c:3868:16: warning: variable 'min' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF gphdraw.c gphdraw.c: In function 'GraphSentProc': gphdraw.c:195:18: warning: variable 'scaleY' set but not used [-Wunused-but-set-variable] gphdraw.c: In function 'DrawGraphToPanel': gphdraw.c:453:27: warning: variable 'xp' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF gxydraw.c gxydraw.c: In function 'DotXYPlot': gxydraw.c:259:19: warning: 'xaxiscount' may be used uninitialized in this function [-Wuninitialized] gxydraw.c:182:19: note: 'xaxiscount' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF gtrdraw.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF seqpanel.c seqpanel.c: In function 'FillFeatureInfo': seqpanel.c:427:18: warning: variable 'stop' set but not used [-Wunused-but-set-variable] seqpanel.c:427:11: warning: variable 'start' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'DrawFeatureCodonLines': seqpanel.c:1897:21: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'DrawFeature': seqpanel.c:2127:21: warning: variable 'prot_len' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'GetSeqChapterFeatureInfo': seqpanel.c:3136:18: warning: variable 'stop' set but not used [-Wunused-but-set-variable] seqpanel.c:3136:11: warning: variable 'start' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'onSeqEdVScrollBarSeqPanel': seqpanel.c:3406:17: warning: variable 'totallines' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'PrintFeature': seqpanel.c:3812:28: warning: variable 'fRight' set but not used [-Wunused-but-set-variable] seqpanel.c:3812:21: warning: variable 'fLeft' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'PrintTranslatedFrame': seqpanel.c:3966:17: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'ExportSequenceText': seqpanel.c:4372:15: warning: pointer targets in passing argument 1 of 'complement_string' differ in signedness [-Wpointer-sign] ../include/salutil.h:78:20: note: expected 'Nlm_CharPtr' but argument is of type 'Nlm_Uint1Ptr' seqpanel.c:4236:17: warning: variable 'curr_para_strings' set but not used [-Wunused-but-set-variable] seqpanel.c:4229:17: warning: variable 'buf' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'SeqEdOnClick': seqpanel.c:4946:21: warning: variable 'direction' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'SeqAlnOnDrag': seqpanel.c:5685:34: warning: variable 'is_ctrl' set but not used [-Wunused-but-set-variable] seqpanel.c:5685:17: warning: variable 'is_double_click' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'ResizeSeqEdView': seqpanel.c:5760:8: warning: variable 'sequence_pos' set but not used [-Wunused-but-set-variable] seqpanel.c:5755:8: warning: variable 'height' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'WriteAlignmentInterleaveToFileEx': seqpanel.c:8664:15: warning: passing argument 1 of 'fputs' from incompatible pointer type [enabled by default] /usr/include/stdio.h:686:12: note: expected 'const char * __restrict__' but argument is of type 'struct FILE *' seqpanel.c:8664:15: warning: passing argument 2 of 'fputs' from incompatible pointer type [enabled by default] /usr/include/stdio.h:686:12: note: expected 'struct FILE * __restrict__' but argument is of type 'Nlm_CharPtr' seqpanel.c: In function 'WriteAlignmentContiguousToFile': seqpanel.c:8760:13: warning: passing argument 1 of 'fputs' from incompatible pointer type [enabled by default] /usr/include/stdio.h:686:12: note: expected 'const char * __restrict__' but argument is of type 'struct FILE *' seqpanel.c:8760:13: warning: passing argument 2 of 'fputs' from incompatible pointer type [enabled by default] /usr/include/stdio.h:686:12: note: expected 'struct FILE * __restrict__' but argument is of type 'Nlm_CharPtr' seqpanel.c: In function 'ReverseSequenceStrandsInAlignment': seqpanel.c:9007:17: warning: variable 'sep' set but not used [-Wunused-but-set-variable] seqpanel.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] seqpanel.c:1171:16: warning: 'GetAlignmentColumnPercentIDsForAlignmentSection' defined but not used [-Wunused-function] seqpanel.c: In function 'SeqEdFindPatternDialog': seqpanel.c:7707:16: warning: 'g1' may be used uninitialized in this function [-Wuninitialized] seqpanel.c: In function 'PrintFeature': seqpanel.c:3726:24: warning: 'str_prot' may be used uninitialized in this function [-Wuninitialized] seqpanel.c:3810:21: note: 'str_prot' was declared here seqpanel.c: In function 'SeqEdOnClick': seqpanel.c:5030:15: warning: 'is_right_end' may be used uninitialized in this function [-Wuninitialized] seqpanel.c:5026:10: warning: 'is_left_end' may be used uninitialized in this function [-Wuninitialized] seqpanel.c: In function 'SeqEdExportProc': seqpanel.c:4353:38: warning: 'seq_pos' may be used uninitialized in this function [-Wuninitialized] seqpanel.c:4233:17: note: 'seq_pos' was declared here seqpanel.c: In function 'onDrawSeqPanel': seqpanel.c:1252:29: warning: 'alnbuf' may be used uninitialized in this function [-Wuninitialized] seqpanel.c:2466:33: note: 'alnbuf' was declared here seqpanel.c:1252:29: warning: 'seqbuf' may be used uninitialized in this function [-Wuninitialized] seqpanel.c:2466:25: note: 'seqbuf' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ingengraph.c ingengraph.c: In function 'Ing_BigEncodeIdxFeat': ingengraph.c:262:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ingengraph.c: In function 'Ing_AddOneAlignToOverviewPage': ingengraph.c:347:13: warning: unused variable 'bsp' [-Wunused-variable] ingengraph.c: In function 'Ing_AddAlignsToOverviewPage': ingengraph.c:372:18: warning: unused variable 'buf' [-Wunused-variable] ingengraph.c:367:18: warning: variable 'NewLine' set but not used [-Wunused-but-set-variable] ingengraph.c: In function 'Ing_DrawOverviewPage': ingengraph.c:492:14: warning: variable 'offset' set but not used [-Wunused-but-set-variable] ingengraph.c:488:14: warning: unused variable 'Nlm_Visible' [-Wunused-variable] ingengraph.c: In function 'Ing_PopOverviewPage': ingengraph.c:715:16: warning: variable 'margin' set but not used [-Wunused-but-set-variable] ingengraph.c:714:16: warning: unused variable 'buf' [-Wunused-variable] ingengraph.c:708:16: warning: unused variable 'sanp' [-Wunused-variable] ingengraph.c: In function 'Ing_PopDetailedPage': ingengraph.c:1437:16: warning: variable 'CurrentSeg' set but not used [-Wunused-but-set-variable] ingengraph.c: In function 'Ing_ExploreSegments': ingengraph.c:1829:22: warning: unused variable 'isDraft' [-Wunused-variable] ingengraph.c:1827:22: warning: unused variable 'vnp' [-Wunused-variable] ingengraph.c:1826:22: warning: unused variable 'gbp' [-Wunused-variable] ingengraph.c:1824:33: warning: variable 'black' set but not used [-Wunused-but-set-variable] ingengraph.c:1823:33: warning: variable 'lime' set but not used [-Wunused-but-set-variable] ingengraph.c:1823:22: warning: variable 'indigo' set but not used [-Wunused-but-set-variable] ingengraph.c: In function 'Ing_AddGCRect': ingengraph.c:1933:17: warning: variable 'comp2' set but not used [-Wunused-but-set-variable] ingengraph.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ingengraph.c:71:13: warning: 'Ing_GetNamesZoomedVal' declared 'static' but never defined [-Wunused-function] ingengraph.c:583:24: warning: 'Ing_SortByChoice' defined but not used [-Wunused-function] ingengraph.c:602:28: warning: 'Ing_CollectFeatures1' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ingenext.c ingenext.c: In function 'Ing_KeepTheBestAlignments': ingenext.c:167:20: warning: variable 'amaip' set but not used [-Wunused-but-set-variable] ingenext.c: In function 'Ing_HandleQBlastResults': ingenext.c:272:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ingenext.c: In function 'Ing_HandleResults': ingenext.c:535:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ingenext.c: In function 'Ing_AccepttRNAargsProc': ingenext.c:739:18: warning: unused variable 'paramlist' [-Wunused-variable] ingenext.c: In function 'Ing_tRNAscanProc': ingenext.c:915:22: warning: unused variable 'moveMe' [-Wunused-variable] ingenext.c:906:22: warning: unused variable 'first' [-Wunused-variable] ingenext.c:902:22: warning: variable 'b' set but not used [-Wunused-but-set-variable] ingenext.c:896:17: warning: unused variable 'args' [-Wunused-variable] ingenext.c: In function 'Ing_ReadtRNAConfigFile': ingenext.c:1125:15: warning: variable 'demomode' set but not used [-Wunused-but-set-variable] ingenext.c: In function 'Ing_DoBlast2Seqs': ingenext.c:1312:23: warning: variable 'is_local' set but not used [-Wunused-but-set-variable] ingenext.c: In function 'Ing_CreateDotMatrixForm': ingenext.c:1834:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ingenext.c: In function 'Ing_RunSpidey': ingenext.c:1994:20: warning: unused variable 'sanp' [-Wunused-variable] ingenext.c:1993:20: warning: unused variable 'spidp_next' [-Wunused-variable] ingenext.c:1992:20: warning: unused variable 'spidp_head' [-Wunused-variable] ingenext.c: In function 'Ing_ReadmRNAs_ext': ingenext.c:2025:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ingenext.c: In function 'Ing_DeleteInsertInGenomic': ingenext.c:2522:16: warning: unused variable 'newsegs' [-Wunused-variable] ingenext.c: In function 'Ing_ReplaceAllMismatchedInLocation': ingenext.c:2615:21: warning: unused variable 'str' [-Wunused-variable] ingenext.c:2612:22: warning: unused variable 'amaip' [-Wunused-variable] ingenext.c: In function 'Ing_MismatchProc': ingenext.c:3025:15: warning: unused variable 'sip' [-Wunused-variable] ingenext.c: In function 'Ing_PrintSpideyReport': ingenext.c:3471:27: warning: variable 'gmis' set but not used [-Wunused-but-set-variable] ingenext.c: In function 'Ing_PrintBlastReport': ingenext.c:3853:18: warning: unused variable 'more' [-Wunused-variable] ingenext.c:3850:18: warning: variable 'Nlm_DkGray' set but not used [-Wunused-but-set-variable] ingenext.c: In function 'Ing_PopulateReport': ingenext.c:4328:20: warning: unused variable 'sip' [-Wunused-variable] ingenext.c:4324:20: warning: unused variable 'temp' [-Wunused-variable] ingenext.c: In function 'Ing_ResizeReportWindow': ingenext.c:4484:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable] ingenext.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable] ../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function] ingenext.c:59:28: warning: 'Ing_BlastCallback' defined but not used [-Wunused-function] ingenext.c:129:13: warning: 'querytimerlimit' defined but not used [-Wunused-variable] ingenext.c:130:13: warning: 'querytimercount' defined but not used [-Wunused-variable] ingenext.c: In function 'Ing_DoBlast2Seqs': ingenext.c:1457:17: warning: 'e_head' may be used uninitialized in this function [-Wuninitialized] ingenext.c: In function 'Ing_ReportClickProc': ingenext.c:4287:21: warning: 'nmismatches' may be used uninitialized in this function [-Wuninitialized] ingenext.c:4262:22: note: 'nmismatches' was declared here ingenext.c: In function 'Ing_MismatchProc': ingenext.c:3170:32: warning: 'gstart' may be used uninitialized in this function [-Wuninitialized] ingenext.c:3197:34: warning: 'mstart' may be used uninitialized in this function [-Wuninitialized] ingenext.c: In function 'Ing_ReplaceAllMismatchedInLocation': ingenext.c:2681:13: warning: 'nmismatches' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ingenwin.c ingenwin.c: In function 'Ing_PopulateDetailedPage': ingenwin.c:134:22: warning: unused variable 'bSelected' [-Wunused-variable] ingenwin.c: In function 'Ing_DoRange': ingenwin.c:394:22: warning: variable 'bsp' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_PopulateCpG': ingenwin.c:576:19: warning: variable 'nchars' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_ResizeCpGWindow': ingenwin.c:642:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_PopulateMotif': ingenwin.c:718:26: warning: variable 'nchars' set but not used [-Wunused-but-set-variable] ingenwin.c:717:24: warning: variable 'swidth' set but not used [-Wunused-but-set-variable] ingenwin.c:717:18: warning: variable 'slen' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_ResizeMotifWindow': ingenwin.c:785:12: warning: unused variable 'name' [-Wunused-variable] ingenwin.c:783:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_ShowComplexity': ingenwin.c:1270:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] ingenwin.c: In function 'Ing_CreateNewFeature': ingenwin.c:1301:22: warning: unused variable 'rnatype' [-Wunused-variable] ingenwin.c: In function 'Ing_GetAlignmentIntervals': ingenwin.c:1418:20: warning: unused variable 'master' [-Wunused-variable] ingenwin.c: In function 'Ing_OldGetAlignmentIntervals': ingenwin.c:1494:20: warning: unused variable 'master' [-Wunused-variable] ingenwin.c: In function 'Ing_OldMakeLocListFromSAP': ingenwin.c:1613:26: warning: unused variable 'slp2' [-Wunused-variable] ingenwin.c:1613:13: warning: unused variable 'slp1' [-Wunused-variable] ingenwin.c: In function 'Ing_OM_MsgFunc': ingenwin.c:2380:15: warning: the address of 'sfc' will always evaluate as 'true' [-Waddress] ingenwin.c:2284:22: warning: unused variable 'segID' [-Wunused-variable] ingenwin.c:2280:22: warning: unused variable 'sep' [-Wunused-variable] ingenwin.c:2271:31: warning: unused variable 'number' [-Wunused-variable] ingenwin.c:2271:22: warning: unused variable 'score' [-Wunused-variable] ingenwin.c:2270:34: warning: unused variable 'n' [-Wunused-variable] ingenwin.c:2270:28: warning: unused variable 's2' [-Wunused-variable] ingenwin.c:2270:22: warning: unused variable 's1' [-Wunused-variable] ingenwin.c: In function 'Ing_MoveCursor': ingenwin.c:2631:9: warning: variable 'grayClr2' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_FeatViewerClickProc': ingenwin.c:2814:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ingenwin.c:2804:14: warning: unused variable 'slp' [-Wunused-variable] ingenwin.c: In function 'Ing_SequenceClickProc': ingenwin.c:2908:22: warning: variable 'ssp' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_ReadInBlastAsn': ingenwin.c:3077:19: warning: unused variable 'Report' [-Wunused-variable] ingenwin.c:3075:19: warning: unused variable 'sip' [-Wunused-variable] ingenwin.c:3074:19: warning: unused variable 'salp' [-Wunused-variable] ingenwin.c:3073:19: warning: unused variable 'n_sap' [-Wunused-variable] ingenwin.c: In function 'Ing_ParseSeqIdFile': ingenwin.c:3142:20: warning: unused variable 'bsp' [-Wunused-variable] ingenwin.c: In function 'Ing_ReadInFeatureTable': ingenwin.c:3194:20: warning: variable 'sanp' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_AssembleGenscanInfo': ingenwin.c:3258:17: warning: unused variable 'slp' [-Wunused-variable] ingenwin.c: In function 'Ing_ReadInGenscan': ingenwin.c:3300:33: warning: unused variable 'str' [-Wunused-variable] ingenwin.c:3300:20: warning: unused variable 'letter' [-Wunused-variable] ingenwin.c:3298:33: warning: unused variable 'first_pass' [-Wunused-variable] ingenwin.c: In function 'Ing_AssembleTabDelimited': ingenwin.c:3519:17: warning: variable 'score' set but not used [-Wunused-but-set-variable] ingenwin.c:3516:17: warning: unused variable 'tmp' [-Wunused-variable] ingenwin.c: In function 'Ing_ReadInTabDelimited': ingenwin.c:3659:40: warning: variable 'label_str' set but not used [-Wunused-but-set-variable] ingenwin.c:3659:20: warning: unused variable 'tmp' [-Wunused-variable] ingenwin.c:3653:20: warning: unused variable 'lip_tmp' [-Wunused-variable] ingenwin.c:3650:20: warning: unused variable 'letter' [-Wunused-variable] ingenwin.c: In function 'Ing_FileOpenSpecial': ingenwin.c:3984:16: warning: unused variable 'Report' [-Wunused-variable] ingenwin.c: In function 'Ing_FileOpenMain': ingenwin.c:4078:21: warning: unused variable 'sep_orig' [-Wunused-variable] ingenwin.c: In function 'Ing_ResizeMainWindow': ingenwin.c:4187:25: warning: variable 'InfoHeight' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_OpenFromFileORNetwork': ingenwin.c:4491:25: warning: variable 'b2' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_EditFeature': ingenwin.c:4640:22: warning: variable 'igvp' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_MarkSeqAnnot': ingenwin.c:4713:16: warning: unused variable 'bNoParent' [-Wunused-variable] ingenwin.c: In function 'Ing_CreateMismatchedDialog': ingenwin.c:4924:31: warning: 'main' is usually a function [-Wmain] ingenwin.c: In function 'Ing_PropagateClickProc': ingenwin.c:5064:22: warning: unused variable 'primID' [-Wunused-variable] ingenwin.c:5063:22: warning: unused variable 'itemtype' [-Wunused-variable] ingenwin.c:5062:22: warning: unused variable 'itemID' [-Wunused-variable] ingenwin.c:5061:22: warning: unused variable 'entityID' [-Wunused-variable] ingenwin.c:5060:22: warning: unused variable 'ssp' [-Wunused-variable] ingenwin.c:5059:22: warning: unused variable 'igvp' [-Wunused-variable] ingenwin.c: In function 'Ing_PrintCompProteins': ingenwin.c:5146:32: warning: unused variable 'str2' [-Wunused-variable] ingenwin.c: In function 'Ing_PropagateReport': ingenwin.c:5282:14: warning: variable 'ARROW' set but not used [-Wunused-but-set-variable] ingenwin.c:5279:14: warning: unused variable 'stringwidth' [-Wunused-variable] ingenwin.c:5277:14: warning: unused variable 'left' [-Wunused-variable] ingenwin.c:5276:14: warning: variable 'prim' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_DoPropagate': ingenwin.c:5596:14: warning: unused variable 'strErr' [-Wunused-variable] ingenwin.c: In function 'Ing_GetFromNetwork': ingenwin.c:7518:11: warning: unused variable 'szAppName' [-Wunused-variable] ingenwin.c: In function 'Ing_SetupMainWindow': ingenwin.c:7761:16: warning: unused variable 'szAppName' [-Wunused-variable] ingenwin.c:7760:48: warning: unused variable 'str2' [-Wunused-variable] ingenwin.c:7760:33: warning: unused variable 'str1' [-Wunused-variable] ingenwin.c:7760:16: warning: unused variable 'title' [-Wunused-variable] ingenwin.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable] ../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function] ingenwin.c:1869:16: warning: 'Ing_DeSelectPrim' defined but not used [-Wunused-function] ingenwin.c:1487:23: warning: 'Ing_OldGetAlignmentIntervals' defined but not used [-Wunused-function] ingenwin.c:1610:18: warning: 'Ing_OldMakeLocListFromSAP' defined but not used [-Wunused-function] ingenwin.c:5535:16: warning: 'Ing_KeywordAlreadyInList' defined but not used [-Wunused-function] ingenwin.c:6717:13: warning: 'Ing_BspListProc' defined but not used [-Wunused-function] ingenwin.c:7552:13: warning: 'Ing_ItemtoNetwork' defined but not used [-Wunused-function] ingenwin.c: In function 'Ing_ReplaceMismatchedProc': ingenwin.c:4902:37: warning: 'stop' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:4902:37: warning: 'start' may be used uninitialized in this function [-Wuninitialized] ingenwin.c: In function 'Ing_PropagateReport': ingenwin.c:5224:12: warning: 'j' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:5137:17: note: 'j' was declared here ingenwin.c: In function 'Ing_FileOpenSpecial': ingenwin.c:3290:28: warning: 'strand' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:3255:17: note: 'strand' was declared here ingenwin.c: In function 'Ing_KozakProc': ingenwin.c:1048:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:1049:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized] ingenwin.c: In function 'Ing_SignalPeptideProc': ingenwin.c:1099:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:1100:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized] ingenwin.c: In function 'Ing_RepeatsProc': ingenwin.c:997:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:998:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized] ingenwin.c: In function 'Ing_PolyAProc': ingenwin.c:946:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:947:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized] ingenwin.c: In function 'Ing_CpGProc': ingenwin.c:895:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:896:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF macrodlg.c macrodlg.c: In function 'ExistingTextDialog': macrodlg.c:1860:22: warning: variable 'ppt' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'SourceQualChoiceDialog': macrodlg.c:3683:48: warning: variable 'b4' set but not used [-Wunused-but-set-variable] macrodlg.c:3683:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable] macrodlg.c:3683:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable] macrodlg.c:3683:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'SourceConstraintDialog': macrodlg.c:3921:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable] macrodlg.c:3921:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable] macrodlg.c:3921:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'CDSGeneProtQualConstraintDialog': macrodlg.c:4235:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable] macrodlg.c:4235:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable] macrodlg.c:4235:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'TestApplyActionDialog': macrodlg.c:11828:8: warning: variable 'field_type' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'TestEditActionDialog': macrodlg.c:12002:8: warning: variable 'field_type' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'AddMacroActions': macrodlg.c:18065:25: warning: variable 'rval' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'PointerToSampleDialog': macrodlg.c:18199:19: warning: variable 'max_char_per_line' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'SampleDialogCopy': macrodlg.c:18319:53: warning: variable 'last_col' set but not used [-Wunused-but-set-variable] macrodlg.c:18319:42: warning: variable 'first_col' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'SingleMacroAcceptButton': macrodlg.c:19597:33: warning: variable 'num_features' set but not used [-Wunused-but-set-variable] macrodlg.c:19597:21: warning: variable 'num_fields' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'LaunchMacroTemplateEditor': macrodlg.c:21793:23: warning: variable 'bfp' set but not used [-Wunused-but-set-variable] macrodlg.c: At top level: macrodlg.c:9046:15: warning: 'LocOrStringConstraintDialog' defined but not used [-Wunused-function] macrodlg.c: In function 'ApplyProductUpdateTableBtn': macrodlg.c:25055:15: warning: 'lip' may be used uninitialized in this function [-Wuninitialized] macrodlg.c: In function 'ActionToSingleMacroActionForm': macrodlg.c:19803:6: warning: 'val' may be used uninitialized in this function [-Wuninitialized] macrodlg.c: In function 'BuildEditMacroActionWindow': macrodlg.c:13991:16: warning: 'indexer_only_group' may be used uninitialized in this function [-Wuninitialized] macrodlg.c:13897:47: note: 'indexer_only_group' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF biosrc.c biosrc.c: In function 'CreateBioSourceDialog': biosrc.c:3506:18: warning: variable 'y' set but not used [-Wunused-but-set-variable] biosrc.c: At top level: biosrc.c:2459:13: warning: 'OrgModPtrToOrgmodDialog' defined but not used [-Wunused-function] biosrc.c:2508:16: warning: 'OrgmodDialogToOrgModPtr' defined but not used [-Wunused-function] biosrc.c:2568:13: warning: 'SubSourcePtrToSubsourceDialog' defined but not used [-Wunused-function] biosrc.c:2991:16: warning: 'SubsourceDialogToSubSourcePtr' defined but not used [-Wunused-function] biosrc.c:3182:26: warning: 'EnumListFromQualNameAssoc' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF cdrgn.c cdrgn.c: In function 'ProductToSeqLocPtr': cdrgn.c:1318:19: warning: variable 'rfp' set but not used [-Wunused-but-set-variable] cdrgn.c: In function 'CreateCodeBreakAlist': cdrgn.c:1951:20: warning: variable 'first' set but not used [-Wunused-but-set-variable] cdrgn.c: In function 'CodeBreakPtrToCodeBreakDialog': cdrgn.c:2002:19: warning: variable 'aa' set but not used [-Wunused-but-set-variable] cdrgn.c: In function 'PopulateAAPopup': cdrgn.c:7055:20: warning: variable 'first' set but not used [-Wunused-but-set-variable] cdrgn.c: At top level: cdrgn.c:6264:14: warning: 'check_rna_type' defined but not used [-Wunused-function] cdrgn.c:6341:15: warning: 'CreateMrnaUserObjectDialog' defined but not used [-Wunused-function] cdrgn.c:6784:18: warning: 'FindOrAddQual' defined but not used [-Wunused-function] cdrgn.c:6803:13: warning: 'RemoveQualByName' defined but not used [-Wunused-function] cdrgn.c:6865:13: warning: 'ConvertRnaRefNameToProductQual' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF import.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF pubdesc.c pubdesc.c: In function 'MakeReplaceAuthorsForm': pubdesc.c:4260:24: warning: variable 'pepp' set but not used [-Wunused-but-set-variable] pubdesc.c: In function 'DisplayDocSum': pubdesc.c:4823:9: warning: variable 'lineheight' set but not used [-Wunused-but-set-variable] pubdesc.c: At top level: pubdesc.c:5335:13: warning: 'Quit' defined but not used [-Wunused-function] pubdesc.c:5071:14: warning: 'AddAll' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF seqsub.c seqsub.c: In function 'SeqSubmitFromTemplateEditor': seqsub.c:3250:20: warning: variable 'omdp' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF mapgene.c mapgene.c: In function 'load_new_align': mapgene.c:79:17: warning: variable 'match_slp' set but not used [-Wunused-but-set-variable] mapgene.c: In function 'figure_loc_by_position': mapgene.c:1039:20: warning: variable 'center' set but not used [-Wunused-but-set-variable] mapgene.c: In function 'cvt_loc_for_single_gene': mapgene.c:1958:29: warning: variable 'p_align_offset' set but not used [-Wunused-but-set-variable] mapgene.c:1957:7: warning: unused variable 'shift' [-Wunused-variable] mapgene.c: In function 'print_header_for_center': mapgene.c:2693:10: warning: variable 'link' set but not used [-Wunused-but-set-variable] mapgene.c: In function 'PrintGeneticMarkerForOneMap': mapgene.c:3635:10: warning: variable 'link' set but not used [-Wunused-but-set-variable] mapgene.c: At top level: mapgene.c:27:13: warning: 'print_this_id' defined but not used [-Wunused-function] mapgene.c:200:13: warning: 'get_center_pointer' defined but not used [-Wunused-function] mapgene.c:1280:13: warning: 'change_anchor_to_front' defined but not used [-Wunused-function] mapgene.c:1748:16: warning: 'merge_slp_list' defined but not used [-Wunused-function] mapgene.c:1788:13: warning: 'adjust_slp_list' defined but not used [-Wunused-function] mapgene.c:3207:16: warning: 'convert_center_name_to_gifname' defined but not used [-Wunused-function] mapgene.c: In function 'PrintContigForOneMap': mapgene.c:3126:2: warning: 'yac_num' may be used uninitialized in this function [-Wuninitialized] mapgene.c:3152:7: note: 'yac_num' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF prtgene.c prtgene.c: In function 'print_store_for_html': prtgene.c:749:7: warning: variable 'white_sp' set but not used [-Wunused-but-set-variable] rm -f libncbidesk.a ar cru libncbidesk.a drawseq.o dotmatrx.o fea2seg.o fstyle.o smdlg1.o smdlg2.o smdlg3.o smtools.o styleman.o stylemui.o glbpic.o layout.o saldist.o saled.o salfiles.o salpanel.o salparam.o salsa.o seqfltr.o seqgraph.o seqgrphx.o seqmtrx.o seqpcc.o seqanal.o aacomp.o seqscrl.o valdlg.o vsm.o vsmfile.o vsmutil.o udvgraph.o udvopen.o udvpanel.o dotvibrant.o dlgutil1.o dlgutil2.o e2trmlst.o e2docsum.o asn2graphic.o medview.o bspview.o gbfview.o gphview.o gphdraw.o gxydraw.o gtrdraw.o seqpanel.o ingengraph.o ingenext.o ingenwin.o macrodlg.o biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o cp -p libncbidesk.a ../lib ranlib ../lib/libncbidesk.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ddvclick.c ddvclick.c: In function 'DDV_SendBSPSelectMsg_OLD': ddvclick.c:979:13: warning: variable 'bDeselectAll' set but not used [-Wunused-but-set-variable] ddvclick.c: In function 'DDV_SendBSPSelectMsg': ddvclick.c:1090:18: warning: variable 'bDeselectAll' set but not used [-Wunused-but-set-variable] ddvclick.c: In function 'DDV_DragProc': ddvclick.c:2013:13: warning: unused variable 'cur_pgp' [-Wunused-variable] ddvclick.c: In function 'DDV_HoldProc': ddvclick.c:2494:13: warning: unused variable 'Scroll' [-Wunused-variable] ddvclick.c:2490:13: warning: unused variable 'cur_pgp' [-Wunused-variable] ddvclick.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] ddvclick.c:1823:13: warning: 'EraseOutline' defined but not used [-Wunused-function] ddvclick.c:1811:16: warning: 'RectanglesAreSame' defined but not used [-Wunused-function] ddvclick.c:611:13: warning: 'DDV_GetSeqAlignCoordGivenCol' defined but not used [-Wunused-function] ddvclick.c:970:13: warning: 'DDV_SendBSPSelectMsg_OLD' defined but not used [-Wunused-function] ddvclick.c: In function 'DDV_GetSeqNameGivenRow': ddvclick.c:956:6: warning: 'sip' may be used uninitialized in this function [-Wuninitialized] ddvclick.c: In function 'DDV_SendBSPSelectMsg.constprop.6': ddvclick.c:1127:7: warning: 'bsp_coord_start' may be used uninitialized in this function [-Wuninitialized] ddvclick.c:1127:22: warning: 'pgp' may be used uninitialized in this function [-Wuninitialized] ddvclick.c:1127:7: warning: 'bsp_coord_stop' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ddvgraph.c ddvgraph.c: In function 'DDV_DrawSequence': ddvgraph.c:701:31: warning: unused variable 'pos' [-Wunused-variable] ddvgraph.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ddvopen.c ddvopen.c: In function 'DDV_GetAndCheckSeqAlign': ddvopen.c:1739:8: warning: variable 'nRet' set but not used [-Wunused-but-set-variable] ddvopen.c: In function 'DDV_FOpenAcceptProc': ddvopen.c:1932:11: warning: variable 'nRet' set but not used [-Wunused-but-set-variable] ddvopen.c: In function 'DDV_NetOpen_okProc': ddvopen.c:2141:8: warning: variable 'AccessType' set but not used [-Wunused-but-set-variable] ddvopen.c: In function 'DDV_ImportBioseqDlg': ddvopen.c:2819:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] ddvopen.c: In function 'DDV_HideDlg': ddvopen.c:3135:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] ddvopen.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] ddvopen.c:1272:13: warning: 'DDV_Convert' defined but not used [-Wunused-function] ddvopen.c:1285:13: warning: 'DDV_NoConvert' defined but not used [-Wunused-function] ddvopen.c:2111:16: warning: 'DDV_IsInt' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ddvpanel.c ddvpanel.c: In function 'DDV_CreateViewerPanel': ddvpanel.c:1177:8: warning: variable 'cxChar' set but not used [-Wunused-but-set-variable] ddvpanel.c: In function 'DDV_DispStyles_OkProc': ddvpanel.c:1543:21: warning: unused variable 'szBuf' [-Wunused-variable] ddvpanel.c: In function 'DDV_ExportTexte': ddvpanel.c:2799:40: warning: variable 'browse' set but not used [-Wunused-but-set-variable] ddvpanel.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] ddvpanel.c:3024:13: warning: 'DDV_DeleteRow' defined but not used [-Wunused-function] ddvpanel.c:3266:13: warning: 'DDV_MoveRowLeft' defined but not used [-Wunused-function] ddvpanel.c:3272:13: warning: 'DDV_MoveRowRight' defined but not used [-Wunused-function] ddvpanel.c:3278:13: warning: 'DDV_MoveLeftBoundaryLeft' defined but not used [-Wunused-function] ddvpanel.c:3284:13: warning: 'DDV_MoveLeftBoundaryRight' defined but not used [-Wunused-function] ddvpanel.c:3290:13: warning: 'DDV_MoveRightBoundaryLeft' defined but not used [-Wunused-function] ddvpanel.c:3296:13: warning: 'DDV_MoveRightBoundaryRight' defined but not used [-Wunused-function] ddvpanel.c:3377:13: warning: 'write_annot' defined but not used [-Wunused-function] ddvpanel.c: In function 'DDVExportTexteOkProc': ddvpanel.c:2647:27: warning: 'bPrintGap' may be used uninitialized in this function [-Wuninitialized] ddvpanel.c: In function 'DDV_SortPGPLineNum': ddvpanel.c:2441:9: warning: 'pgp' may be used uninitialized in this function [-Wuninitialized] rm -f libddvlib.a ar cru libddvlib.a ddvclick.o ddvgraph.o ddvopen.o ddvpanel.o cp -p libddvlib.a ../lib ranlib ../lib/libddvlib.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF corematx.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF dvncode.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objmmdb1.c objmmdb1.c: In function 'BiostrucAsnRead': objmmdb1.c:90:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucIdFree': objmmdb1.c:323:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucIdAsnRead': objmmdb1.c:358:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'BiostrucSetAsnRead': objmmdb1.c:547:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucAnnotSetAsnRead': objmmdb1.c:716:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucResidueGraphSetAsnRead': objmmdb1.c:885:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucDescrFree': objmmdb1.c:1015:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucDescrAsnRead': objmmdb1.c:1059:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'BiostrucHistoryAsnRead': objmmdb1.c:1270:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:1269:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'BiostrucReplaceAsnRead': objmmdb1.c:1450:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:1449:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'VersionOfDatabase_version_of_databaseFree': objmmdb1.c:1618:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucSourceAsnRead': objmmdb1.c:1652:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'VersionOfDatabase_version_of_databaseAsnRead': objmmdb1.c:1753:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'BiostrucGraphAsnRead': objmmdb1.c:2000:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiomolDescrFree': objmmdb1.c:2138:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiomolDescrAsnRead': objmmdb1.c:2188:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'ResidueGraphAsnRead': objmmdb1.c:2445:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'MoleculeGraphAsnRead': objmmdb1.c:2652:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'InterResidueBondAsnRead': objmmdb1.c:2853:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:2852:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'ResidueAsnRead': objmmdb1.c:3033:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:3032:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'ResidueGraphPntrFree': objmmdb1.c:3172:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'ResidueGraphPntrAsnRead': objmmdb1.c:3207:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'BiostrucGraphPntrAsnRead': objmmdb1.c:3394:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:3393:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'BiostrucResidueGraphSetPntrAsnRead': objmmdb1.c:3559:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:3558:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'AtomAsnRead': objmmdb1.c:3725:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'IntraResidueBondAsnRead': objmmdb1.c:3916:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:3915:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'ChiralCenterAsnRead': objmmdb1.c:4088:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:4087:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'AtomPntrAsnRead': objmmdb1.c:4276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:4275:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'AtomPntrSetAsnRead': objmmdb1.c:4430:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: At top level: ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] objmmdb1.c: In function 'BiomolDescrAsnRead': objmmdb1.c:2283:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb1.c: In function 'BiostrucDescrAsnRead': objmmdb1.c:1126:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objmmdb2.c objmmdb2.c: In function 'BiostrucModelAsnRead': objmmdb2.c:88:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'ModelDescrFree': objmmdb2.c:241:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'ModelDescrAsnRead': objmmdb2.c:288:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'ModelSpaceAsnRead': objmmdb2.c:511:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c:510:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'Coordinates_coordinatesFree': objmmdb2.c:707:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'ModelCoordinateSetAsnRead': objmmdb2.c:741:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'Coordinates_coordinatesAsnRead': objmmdb2.c:829:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'ReferenceFrameAsnRead': objmmdb2.c:1060:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c:1059:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'CoordinatesFree': objmmdb2.c:1190:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'CoordinatesAsnRead': objmmdb2.c:1228:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'AtomicCoordinatesAsnRead': objmmdb2.c:1417:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'Surface_surfaceFree': objmmdb2.c:1636:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'SurfaceCoordinatesAsnRead': objmmdb2.c:1682:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c:1681:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'Surface_surfaceAsnRead': objmmdb2.c:1762:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'DensityCoordinatesAsnRead': objmmdb2.c:2026:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'ModelSpacePointsAsnRead': objmmdb2.c:2258:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'AtomicTemperatureFactorsFree': objmmdb2.c:2398:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'AtomicTemperatureFactorsAsnRead': objmmdb2.c:2433:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'AtomicOccupanciesAsnRead': objmmdb2.c:2609:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'AlternateConformationIdsAsnRead': objmmdb2.c:2753:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'ConformationEnsembleAsnRead': objmmdb2.c:2883:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'IsotropicTemperatureFactorsAsnRead': objmmdb2.c:3046:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'AnisotropicTemperatureFactorsAsnRead': objmmdb2.c:3212:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'TMeshAsnRead': objmmdb2.c:3416:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'TrianglesAsnRead': objmmdb2.c:3615:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] objmmdb2.c: In function 'CoordinatesAsnRead': objmmdb2.c:1278:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb2.c: In function 'ModelDescrAsnRead': objmmdb2.c:365:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb2.c: In function 'AtomicTemperatureFactorsAsnRead': objmmdb2.c:2479:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb2.c: In function 'SurfaceCoordinatesAsnRead': objmmdb2.c:1824:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb2.c:1761:10: note: 'choice' was declared here objmmdb2.c: In function 'ModelCoordinateSetAsnRead': objmmdb2.c:875:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb2.c:828:10: note: 'choice' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objmmdb3.c objmmdb3.c: In function 'BiostrucFeatureSetAsnRead': objmmdb3.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ChemGraphPntrsFree': objmmdb3.c:219:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'AtomPntrsAsnRead': objmmdb3.c:442:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ChemGraphAlignmentAsnRead': objmmdb3.c:624:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ChemGraphInteractionAsnRead': objmmdb3.c:821:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'SphereAsnRead': objmmdb3.c:1020:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ConeAsnRead': objmmdb3.c:1188:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'CylinderAsnRead': objmmdb3.c:1368:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'BrickAsnRead': objmmdb3.c:1553:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'TransformAsnRead': objmmdb3.c:1792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'BiostrucFeatureSetDescrFree': objmmdb3.c:1916:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'Location_locationFree': objmmdb3.c:2156:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'BiostrucFeatureAsnRead': objmmdb3.c:2201:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'Property_propertyFree': objmmdb3.c:2716:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ColorPropAsnRead': objmmdb3.c:2792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'CameraAsnRead': objmmdb3.c:2979:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'BiostrucScriptAsnRead': objmmdb3.c:3163:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'RegionPntrsAsnRead': objmmdb3.c:3322:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'RegionSimilarityAsnRead': objmmdb3.c:3639:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'OtherFeatureAsnRead': objmmdb3.c:3815:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'BiostrucMoleculePntrAsnRead': objmmdb3.c:3988:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'MoleculePntrsAsnRead': objmmdb3.c:4330:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ResidueExplicitPntrsAsnRead': objmmdb3.c:4492:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ResidueIntervalPntrAsnRead': objmmdb3.c:4659:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'RegionCoordinatesAsnRead': objmmdb3.c:4830:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'RegionBoundaryFree': objmmdb3.c:4965:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'AlignStatsAsnRead': objmmdb3.c:5196:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'RealValueAsnRead': objmmdb3.c:5437:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ModelSpacePointAsnRead': objmmdb3.c:5597:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'MoveFree': objmmdb3.c:5740:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'RotMatrixAsnRead': objmmdb3.c:5948:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'TransMatrixAsnRead': objmmdb3.c:6180:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'GLMatrixAsnRead': objmmdb3.c:6358:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'BiostrucScriptStepAsnRead': objmmdb3.c:6658:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] objmmdb3.c: In function 'MoveAsnRead': objmmdb3.c:5820:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb3.c: In function 'RegionBoundaryAsnRead': objmmdb3.c:5059:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb3.c: In function 'BiostrucFeatureSetDescrAsnRead': objmmdb3.c:2019:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb3.c: In function 'ChemGraphPntrsAsnRead': objmmdb3.c:306:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb3.c: In function 'RegionPntrsAsnRead': objmmdb3.c:3456:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb3.c:3401:10: note: 'choice' was declared here objmmdb3.c: In function 'BiostrucFeatureAsnRead': objmmdb3.c:2365:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb3.c:2303:10: note: 'choice' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objcn3d.c objcn3d.c: In function 'Cn3dStyleDictionaryAsnRead': objcn3d.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c: In function 'Cn3dUserAnnotationsAsnRead': objcn3d.c:251:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c: In function 'Cn3dColorAsnRead': objcn3d.c:415:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:414:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dBackboneStyleAsnRead': objcn3d.c:604:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:603:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dGeneralStyleAsnRead': objcn3d.c:787:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:786:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dBackboneLabelStyleAsnRead': objcn3d.c:969:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:968:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dStyleSettingsAsnRead': objcn3d.c:1171:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:1170:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dStyleSettingsSetAsnRead': objcn3d.c:1573:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c: In function 'Cn3dStyleTableItemAsnRead': objcn3d.c:1702:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:1701:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dResidueRangeAsnRead': objcn3d.c:1866:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:1865:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dMoleculeLocationAsnRead': objcn3d.c:2028:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c: In function 'Cn3dObjectLocationAsnRead': objcn3d.c:2190:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c: In function 'Cn3dUserAnnotationAsnRead': objcn3d.c:2355:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c: In function 'Cn3dGLMatrixAsnRead': objcn3d.c:2546:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:2545:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dVectorAsnRead': objcn3d.c:2833:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:2832:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dViewSettingsAsnRead': objcn3d.c:3005:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:3004:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF mmdbapi.c mmdbapi.c: In function 'MakeAModelstruc': mmdbapi.c:192:11: warning: unused variable 'iCount' [-Wunused-variable] mmdbapi.c:189:11: warning: unused variable 'pdnmsCount' [-Wunused-variable] mmdbapi.c: In function 'AddPFBSelect': mmdbapi.c:532:11: warning: unused variable 'pmsdStruc' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF mmdbapi1.c mmdbapi1.c: In function 'FreeAtomicModelAsnLists': mmdbapi1.c:1037:21: warning: unused variable 'pcoThis' [-Wunused-variable] mmdbapi1.c: In function 'FetchBS': mmdbapi1.c:1242:13: warning: unused variable 'bIsNetwork' [-Wunused-variable] mmdbapi1.c: In function 'FreeSurfaceModelAsnList': mmdbapi1.c:1627:16: warning: variable 'pvnX' set but not used [-Wunused-but-set-variable] mmdbapi1.c: In function 'MakeChemGraphNodeList': mmdbapi1.c:2343:16: warning: variable 'pvnThis' set but not used [-Wunused-but-set-variable] mmdbapi1.c: In function 'DoApplyTransform': mmdbapi1.c:2573:8: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] mmdbapi1.c: In function 'DoReverseTransform': mmdbapi1.c:2713:8: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] mmdbapi1.c: In function 'InstBSAnnotSet': mmdbapi1.c:2860:8: warning: unused variable 'psfsThis' [-Wunused-variable] mmdbapi1.c:2859:22: warning: unused variable 'pbsfThis' [-Wunused-variable] mmdbapi1.c:2855:9: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] mmdbapi1.c: In function 'BiosToSeq': mmdbapi1.c:2978:19: warning: unused variable 'loc1' [-Wunused-variable] mmdbapi1.c:2967:22: warning: unused variable 'pbsf' [-Wunused-variable] mmdbapi1.c: In function 'fnPBSFtoPSA': mmdbapi1.c:3174:19: warning: unused variable 'loc1' [-Wunused-variable] mmdbapi1.c: In function 'BiostrToSeqAnnotSet': mmdbapi1.c:3408:19: warning: unused variable 'loc1' [-Wunused-variable] mmdbapi1.c:3397:22: warning: unused variable 'pbsf' [-Wunused-variable] mmdbapi1.c: In function 'InstallAlignedSlave': mmdbapi1.c:3877:9: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi1.c:3874:9: warning: unused variable 'psfsThis' [-Wunused-variable] mmdbapi1.c: In function 'BiostrucAddFeature': mmdbapi1.c:4184:11: warning: variable 'ncbiVast' set but not used [-Wunused-but-set-variable] mmdbapi1.c:4182:11: warning: variable 'pdbFootnote' set but not used [-Wunused-but-set-variable] mmdbapi1.c:4181:11: warning: variable 'pdbSite' set but not used [-Wunused-but-set-variable] mmdbapi1.c:4172:15: warning: unused variable 'pdvnThis' [-Wunused-variable] mmdbapi1.c: In function 'BiostrucAsnGet': mmdbapi1.c:5289:18: warning: variable 'aop' set but not used [-Wunused-but-set-variable] mmdbapi1.c: In function 'BiosToSeq': mmdbapi1.c:3127:20: warning: 'slavesip' may be used uninitialized in this function [-Wuninitialized] mmdbapi1.c: In function 'BiostrToSeqAnnotSet': mmdbapi1.c:3559:20: warning: 'slavesip' may be used uninitialized in this function [-Wuninitialized] mmdbapi1.c: In function 'InstBSAnnotSet': mmdbapi1.c:2885:13: warning: 'iMMDBId' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF mmdbapi2.c mmdbapi2.c: In function 'GetAtomLocs': mmdbapi2.c:1471:9: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] mmdbapi2.c: In function 'AssignAtomLocId': mmdbapi2.c:1537:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi2.c: In function 'AssignBackBone': mmdbapi2.c:1686:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi2.c: In function 'AssignVirtual': mmdbapi2.c:1790:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi2.c: In function 'AssignIons': mmdbapi2.c:1846:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi2.c: In function 'MolFromPDBChain': mmdbapi2.c:1931:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi2.c: In function 'SeqStringFromMol': mmdbapi2.c:1948:9: warning: unused variable 'iTest' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF mmdbapi3.c mmdbapi3.c: In function 'WritePDBHeader': mmdbapi3.c:840:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] mmdbapi3.c: In function 'WritePDBRemarks': mmdbapi3.c:1389:8: warning: unused variable 'len' [-Wunused-variable] mmdbapi3.c:1388:9: warning: unused variable 'pcThis' [-Wunused-variable] mmdbapi3.c:1387:21: warning: unused variable 'pbsdrLast' [-Wunused-variable] mmdbapi3.c:1386:21: warning: unused variable 'pbsdrThis' [-Wunused-variable] mmdbapi3.c: In function 'WritePDBConnect': mmdbapi3.c:1610:9: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi3.c: In function 'WritePDBModelList': mmdbapi3.c:1625:10: warning: variable 'iCount' set but not used [-Wunused-but-set-variable] mmdbapi3.c: In function 'WriteKinAtom': mmdbapi3.c:2287:11: warning: unused variable 'pcElName' [-Wunused-variable] mmdbapi3.c: In function 'WriteFASTAMolecule': mmdbapi3.c:3537:9: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi3.c: In function 'WriteKinAtom': mmdbapi3.c:2314:12: warning: 'iTemp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF mmdbapi4.c mmdbapi4.c: In function 'RefreshSurface': mmdbapi4.c:147:10: warning: unused variable 'iVal' [-Wunused-variable] mmdbapi4.c: In function 'FreeCoordinatesAsnLists': mmdbapi4.c:335:28: warning: variable 'pdcThis' set but not used [-Wunused-but-set-variable] mmdbapi4.c: In function 'FreeRedundantAsn': mmdbapi4.c:371:10: warning: unused variable 'pmmdThis' [-Wunused-variable] mmdbapi4.c:370:11: warning: unused variable 'pdnmmThis' [-Wunused-variable] mmdbapi4.c:367:22: warning: unused variable 'pbsmThis' [-Wunused-variable] mmdbapi4.c: In function 'RefreshModelAsnMem': mmdbapi4.c:474:13: warning: unused variable 'iCoordSets' [-Wunused-variable] mmdbapi4.c:465:20: warning: unused variable 'pappThis' [-Wunused-variable] mmdbapi4.c:464:27: warning: unused variable 'pmspThis' [-Wunused-variable] mmdbapi4.c:463:28: warning: unused variable 'pocThis' [-Wunused-variable] mmdbapi4.c:458:34: warning: unused variable 'paciThis' [-Wunused-variable] mmdbapi4.c: In function 'RebuildChemGraphAsn': mmdbapi4.c:931:15: warning: unused variable 'bOK' [-Wunused-variable] mmdbapi4.c: In function 'WriteASNChemGraphOnly': mmdbapi4.c:1192:10: warning: unused variable 'iHash' [-Wunused-variable] mmdbapi4.c: In function 'FreeSingleModel': mmdbapi4.c:1336:11: warning: unused variable 'pdnml' [-Wunused-variable] mmdbapi4.c:1332:22: warning: unused variable 'pbsmTemp' [-Wunused-variable] mmdbapi4.c: In function 'WriteAsnModelList': mmdbapi4.c:1505:14: warning: unused variable 'paioAIP' [-Wunused-variable] mmdbapi4.c:1502:11: warning: unused variable 'pmldThis' [-Wunused-variable] mmdbapi4.c:1498:11: warning: unused variable 'pdnmlThis' [-Wunused-variable] mmdbapi4.c:1496:22: warning: unused variable 'pbsmThis' [-Wunused-variable] mmdbapi4.c:1495:17: warning: unused variable 'pBSThis' [-Wunused-variable] mmdbapi4.c:1494:13: warning: unused variable 'bFirst' [-Wunused-variable] mmdbapi4.c:1493:10: warning: unused variable 'iTest' [-Wunused-variable] mmdbapi4.c: In function 'BiostrucAnnotSetToSeqAnnot': mmdbapi4.c:1741:19: warning: unused variable 'loc1' [-Wunused-variable] mmdbapi4.c: In function 'WriteAsnModelList': mmdbapi4.c:1503:13: warning: 'bRet' may be used uninitialized in this function [-Wuninitialized] mmdbapi4.c: In function 'BiostrucAnnotSetToSeqAnnot': mmdbapi4.c:1872:20: warning: 'slavesip' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF mmdbentr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF vastsubs.c vastsubs.c: In function 'LoadSubsetTable': vastsubs.c:212:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:239:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:258:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:287:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:296:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:302:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:304:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:202:16: warning: 'len' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF prunebsc.c prunebsc.c: In function 'PruneFeatureSet': prunebsc.c:220:22: warning: variable 'bsfpDie' set but not used [-Wunused-but-set-variable] prunebsc.c: In function 'PruneModel': prunebsc.c:272:30: warning: variable 'mcsDie' set but not used [-Wunused-but-set-variable] prunebsc.c: In function 'PruneBiostruc': prunebsc.c:559:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] prunebsc.c:574:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] prunebsc.c:663:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] prunebsc.c:666:21: warning: 'feature_name' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:649:23: warning: 'pirbnew' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:591:26: warning: 'currenthet' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:701:34: warning: 'mol_id' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:562:16: warning: 'chnid' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:182:7: warning: 'mtype' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:173:8: note: 'mtype' was declared here prunebsc.c:204:25: warning: 'currenthet' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:171:47: note: 'currenthet' was declared here prunebsc.c:110:7: warning: 'mtype' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:102:8: note: 'mtype' was declared here prunebsc.c:127:25: warning: 'currentbp' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:100:38: note: 'currentbp' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objcdd.c objcdd.c: In function 'CddIdFree': objcdd.c:53:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'CddIdAsnRead': objcdd.c:85:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddIdSetAsnRead': objcdd.c:248:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:245:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddIdSetAsnWrite': objcdd.c:301:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddAsnRead': objcdd.c:401:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'CddSetAsnRead': objcdd.c:796:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:793:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddSetAsnWrite': objcdd.c:849:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddTreeAsnRead': objcdd.c:932:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:931:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddTreeSetAsnRead': objcdd.c:1143:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:1140:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddTreeSetAsnWrite': objcdd.c:1196:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddPrefNodesAsnRead': objcdd.c:1276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:1275:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddPrefNodesAsnWrite': objcdd.c:1365:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddProjectAsnRead': objcdd.c:1472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'CddOrgRefAsnRead': objcdd.c:1661:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:1660:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddOrgRefSetAsnRead': objcdd.c:1830:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:1827:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddOrgRefSetAsnWrite': objcdd.c:1883:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddPrefNodeDescrFree': objcdd.c:1923:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'CddPrefNodeDescrAsnRead': objcdd.c:1958:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddPrefNodeDescrSetAsnRead': objcdd.c:2121:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:2118:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddPrefNodeDescrSetAsnWrite': objcdd.c:2174:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'GlobalIdAsnRead': objcdd.c:2253:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:2252:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddRepeatAsnRead': objcdd.c:2439:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:2438:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddBookRefAsnRead': objcdd.c:2615:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:2614:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddDescrSetAsnRead': objcdd.c:3170:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:3167:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddDescrSetAsnWrite': objcdd.c:3223:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'MatrixAsnRead': objcdd.c:3301:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'TriangleAsnRead': objcdd.c:3489:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'UpdateCommentFree': objcdd.c:3625:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'UpdateCommentAsnRead': objcdd.c:3669:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'UpdateAlignAsnRead': objcdd.c:3873:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'RejectIdAsnRead': objcdd.c:4047:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'RejectIdAsnWrite': objcdd.c:4122:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'FeatureEvidenceFree': objcdd.c:4170:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'FeatureEvidenceAsnRead': objcdd.c:4214:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'AlignAnnotAsnRead': objcdd.c:4419:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'AlignAnnotSetAsnRead': objcdd.c:4587:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:4584:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'AlignAnnotSetAsnWrite': objcdd.c:4640:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'DomainParentAsnRead': objcdd.c:4718:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:4717:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'SequenceTreeAsnRead': objcdd.c:4898:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:4897:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'AlgorithmTypeAsnRead': objcdd.c:5085:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:5084:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'SeqTreeNodeAsnRead': objcdd.c:5387:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:5386:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'Children_footprintAsnRead': objcdd.c:5572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:5571:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'NodeAnnotationAsnRead': objcdd.c:5862:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:5861:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddViewerRectAsnRead': objcdd.c:6027:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:6026:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddViewerAsnRead': objcdd.c:6208:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'CddScriptAsnRead': objcdd.c:6382:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:6381:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] objcdd.c: In function 'CddDescrAsnRead': objcdd.c:2994:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF cddutil.c cddutil.c: In function 'CddGetPmIds': cddutil.c:649:17: warning: unused variable 'bRefOpen' [-Wunused-variable] cddutil.c: In function 'CddGetAnnotNames': cddutil.c:807:19: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddCheckForRepeats': cddutil.c:1034:7: warning: the address of 'CddHasConsensus' will always evaluate as 'true' [-Waddress] cddutil.c:1013:23: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddMSLDenDiagToMSLDenSeg': cddutil.c:1663:30: warning: variable 'lasts' set but not used [-Wunused-but-set-variable] cddutil.c:1663:23: warning: variable 'lastm' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'SeqAlignInform': cddutil.c:1938:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddAlignInform': cddutil.c:2125:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddPssmInform': cddutil.c:2248:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddPosFreqInform': cddutil.c:2306:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddDenDiagCposComputation': cddutil.c:2368:33: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable] cddutil.c:2365:25: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddCposComputation': cddutil.c:2571:33: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable] cddutil.c:2568:25: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddRetrieveBioseqById': cddutil.c:3379:15: warning: unused variable 'retcode' [-Wunused-variable] cddutil.c:3377:15: warning: unused variable 'uid' [-Wunused-variable] cddutil.c: In function 'CddConsensus': cddutil.c:3853:49: warning: variable 'm_end' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddCposCompPart1': cddutil.c:4247:25: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddGetNewIndexForThreading': cddutil.c:4392:14: warning: unused variable 'Index' [-Wunused-variable] cddutil.c: In function 'CddCposComp': cddutil.c:4474:33: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddDenDiagCposComp2KBP': cddutil.c:4745:59: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddDumpTaxLinks': cddutil.c:5727:16: warning: unused variable 'txid' [-Wunused-variable] cddutil.c: At top level: cddutil.c:6267:1: warning: "/*" within comment [-Wcomment] ../include/cdd.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/cdd.h:341:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/cdd.h:342:19: warning: 'at' defined but not used [-Wunused-variable] ../include/cdd.h:343:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objcdd.h:642:37: warning: 'Children_childrenFree' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:643:37: warning: 'Children_childrenAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:644:24: warning: 'Children_childrenAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:666:38: warning: 'Children_footprintFree' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:667:38: warning: 'Children_footprintNew' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:668:38: warning: 'Children_footprintAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:669:24: warning: 'Children_footprintAsnWrite' declared 'static' but never defined [-Wunused-function] cddutil.c:4661:16: warning: 'CddtakeMatrixCheckpoint' defined but not used [-Wunused-function] ../include/cddutil.h:589:25: warning: 'CddFindSeqIdInSeqLoc' declared 'static' but never defined [-Wunused-function] cddutil.c: In function 'CddBioseqCopy': cddutil.c:1362:21: warning: 'head' may be used uninitialized in this function [-Wuninitialized] cddutil.c: In function 'CddCopyMSLDenDiag': cddutil.c:3015:25: warning: 'ddpTail' may be used uninitialized in this function [-Wuninitialized] cddutil.c: In function 'CddCalculateTriangle': cddutil.c:3535:24: warning: 'buffer1' may be used uninitialized in this function [-Wuninitialized] cddutil.c:3524:22: warning: 'pscTail' may be used uninitialized in this function [-Wuninitialized] cddutil.c: In function 'CddDenDiagCposComp2KBP': cddutil.c:4764:27: warning: 'pssm' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF cddposutil.c cddposutil.c: In function 'CddfindThreshSequences': cddposutil.c:359:15: warning: variable 'thisId' set but not used [-Wunused-but-set-variable] cddposutil.c: In function 'CddfindDenseDiagThreshSequences': cddposutil.c:386:16: warning: variable 'thisId' set but not used [-Wunused-but-set-variable] cddposutil.c: In function 'CddposFreqsToMatrix': cddposutil.c:1038:45: warning: operation on '*(*(posSearch->posPrivateMatrix + (unsigned int)((unsigned int)length * 4u)) + (unsigned int)((unsigned int)a * 4u))' may be undefined [-Wsequence-point] cddposutil.c: In function 'CddposDenseDiagDemographics': cddposutil.c:1094:17: warning: unused variable 'is_new_id' [-Wunused-variable] cddposutil.c:1093:17: warning: unused variable 'segIndex' [-Wunused-variable] cddposutil.c:1092:25: warning: variable 'startS' set but not used [-Wunused-but-set-variable] cddposutil.c:1092:17: warning: variable 'startQ' set but not used [-Wunused-but-set-variable] cddposutil.c:1091:17: warning: unused variable 'curId' [-Wunused-variable] cddposutil.c: In function 'CddSetUpSearchInternalByLoc': cddposutil.c:1246:39: warning: unused variable 'last_length_adjustment' [-Wunused-variable] cddposutil.c: In function 'CddSetUpSearchWithReadDb': cddposutil.c:2040:43: warning: variable 'final_db_seq' set but not used [-Wunused-but-set-variable] cddposutil.c:2006:28: warning: unused variable 'virtual_oid_bit' [-Wunused-variable] cddposutil.c:2006:19: warning: unused variable 'oid_bit' [-Wunused-variable] cddposutil.c:2005:30: warning: unused variable 'virtual_mask_index' [-Wunused-variable] cddposutil.c:2005:18: warning: unused variable 'mask_index' [-Wunused-variable] cddposutil.c:2004:19: warning: unused variable 'alias_oidlist' [-Wunused-variable] cddposutil.c:2003:19: warning: unused variable 'use_private_gilist' [-Wunused-variable] cddposutil.c:2000:20: warning: unused variable 'vnp' [-Wunused-variable] cddposutil.c: In function 'CddposReadAlignment': cddposutil.c:2226:16: warning: variable 'alignPos' set but not used [-Wunused-but-set-variable] cddposutil.c: At top level: ../include/objcdd.h:642:37: warning: 'Children_childrenFree' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:643:37: warning: 'Children_childrenAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:644:24: warning: 'Children_childrenAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:666:38: warning: 'Children_footprintFree' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:667:38: warning: 'Children_footprintNew' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:668:38: warning: 'Children_footprintAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:669:24: warning: 'Children_footprintAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:507:27: warning: 'CddReadBlastOptions' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:512:13: warning: 'BlastKarlinBlkCopy' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:516:13: warning: 'CddputMatrixKbp' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:518:13: warning: 'CddputMatrixMatrix' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:522:16: warning: 'CddtakeMatrixCheckpoint' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:589:25: warning: 'CddFindSeqIdInSeqLoc' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:591:25: warning: 'CddRelocateSeqLoc' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:592:25: warning: 'CddSeqLocInExpAlign' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:593:25: warning: 'CddFindSeqIdInAlignAnnot' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:623:24: warning: 'HitYet' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:649:16: warning: 'CddFixForXML' declared 'static' but never defined [-Wunused-function] cddposutil.c:971:13: warning: 'CddfreePosFreqs' defined but not used [-Wunused-function] cddposutil.c: In function 'CddposComputeSequenceWeights': cddposutil.c:840:35: warning: 'intervalSigma' may be used uninitialized in this function [-Wuninitialized] cddposutil.c:832:68: warning: 'Sigma' may be used uninitialized in this function [-Wuninitialized] cddposutil.c: In function 'CddposDemographics': cddposutil.c:1199:24: warning: 'retrievalOffset' may be used uninitialized in this function [-Wuninitialized] cddposutil.c: In function 'CddSetUpSearchWithReadDb': cddposutil.c:1740:48: warning: 'min_query_length' may be used uninitialized in this function [-Wuninitialized] cddposutil.c:1246:63: note: 'min_query_length' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF objmime.c objmime.c: In function 'NcbiMimeAsn1Free': objmime.c:123:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmime.c: In function 'NcbiMimeAsn1AsnRead': objmime.c:170:12: warning: unused variable 'isError' [-Wunused-variable] objmime.c: In function 'Data_dataFree': objmime.c:377:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmime.c: In function 'EntrezGeneralAsnRead': objmime.c:423:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c:422:12: warning: unused variable 'isError' [-Wunused-variable] objmime.c: In function 'Data_dataAsnRead': objmime.c:517:12: warning: unused variable 'isError' [-Wunused-variable] objmime.c: In function 'BiostrucAlignAsnRead': objmime.c:791:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c: In function 'BiostrucAlignSeqAsnRead': objmime.c:1016:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c: In function 'BiostrucSeqAsnRead': objmime.c:1208:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c: In function 'BiostrucSeqsAsnRead': objmime.c:1402:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c: In function 'SeqAlignData_seq_align_dataFree': objmime.c:1599:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmime.c: In function 'BiostrucSeqsAlignsCddAsnRead': objmime.c:1633:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c: In function 'SeqAlignData_seq_align_dataAsnRead': objmime.c:1720:12: warning: unused variable 'isError' [-Wunused-variable] objmime.c: In function 'BundleSeqsAlignsAsnRead': objmime.c:1954:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:642:37: warning: 'Children_childrenFree' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:643:37: warning: 'Children_childrenAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:644:24: warning: 'Children_childrenAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:666:38: warning: 'Children_footprintFree' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:667:38: warning: 'Children_footprintNew' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:668:38: warning: 'Children_footprintAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:669:24: warning: 'Children_footprintAsnWrite' declared 'static' but never defined [-Wunused-function] objmime.c: In function 'NcbiMimeAsn1AsnRead': objmime.c:232:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmime.c: In function 'EntrezGeneralAsnRead': objmime.c:579:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmime.c:516:10: note: 'choice' was declared here objmime.c: In function 'BiostrucSeqsAlignsCddAsnRead': objmime.c:1766:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmime.c:1719:10: note: 'choice' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF strucapi.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF thrdalgs.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF thrdatd.c thrdatd.c: In function 'atd': thrdatd.c:198:8: warning: variable 'hh' set but not used [-Wunused-but-set-variable] thrdatd.c:195:6: warning: variable 'rf' set but not used [-Wunused-but-set-variable] thrdatd.c:185:14: warning: unused variable 'm' [-Wunused-variable] thrdatd.c:185:12: warning: unused variable 'l' [-Wunused-variable] thrdatd.c:168:6: warning: variable 'nrp' set but not used [-Wunused-but-set-variable] thrdatd.c:167:6: warning: variable 'nrr' set but not used [-Wunused-but-set-variable] thrdatd.c: In function 'PrintThdTbl': thrdatd.c:1804:3: warning: too many arguments for format [-Wformat-extra-args] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF thrdbwfi.c thrdbwfi.c: In function 'bwfi': thrdbwfi.c:114:1: warning: control reaches end of non-void function [-Wreturn-type] thrdbwfi.c:102:13: warning: 'nt' may be used uninitialized in this function [-Wuninitialized] thrdbwfi.c:89:20: warning: 'nz' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF thrdcpal.c thrdcpal.c: In function 'cpal': thrdcpal.c:210:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF thrdcpll.c thrdcpll.c: In function 'cpll': thrdcpll.c:74:5: warning: variable 'nrt' set but not used [-Wunused-but-set-variable] thrdcpll.c:229:1: warning: control reaches end of non-void function [-Wreturn-type] thrdcpll.c:220:15: warning: 'r2' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF thrdcprl.c thrdcprl.c: In function 'cprl': thrdcprl.c:261:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF thrdcxei.c thrdcxei.c: In function 'cxei': thrdcxei.c:94:15: warning: variable 'ms' set but not used [-Wunused-but-set-variable] thrdcxei.c:205:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF thrddgri.c thrddgri.c: In function 'g': thrddgri.c:72:5: warning: variable 's0' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF thrdrsmp.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF thrdsal0.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF thrdsalr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF thrdsalu.c thrdsalu.c: In function 'salu': thrdsalu.c:83:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF thrdsgoi.c thrdsgoi.c: In function 'sgoi': thrdsgoi.c:123:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF thrdslo0.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF thrdslor.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF thrdslou.c thrdslou.c: In function 'slou': thrdslou.c:114:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF thrdspci.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF thrdspea.c thrdspea.c: In function 'spea': thrdspea.c:91:9: warning: variable 'nrt' set but not used [-Wunused-but-set-variable] thrdspea.c:189:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF thrdspel.c thrdspel.c: In function 'spel': thrdspel.c:88:9: warning: variable 'nrt' set but not used [-Wunused-but-set-variable] thrdspel.c:188:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF thrdspni.c thrdspni.c: In function 'spni': thrdspni.c:238:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF thrdttb0.c thrdttb0.c: In function 'ttb0': thrdttb0.c:75:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF thrdttbi.c thrdttbi.c: In function 'ttbi': thrdttbi.c:124:3: warning: 'sm' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF thrdzsc.c thrdzsc.c: In function 'zsc': thrdzsc.c:107:7: warning: unused variable 'gs' [-Wunused-variable] thrdzsc.c:102:18: warning: unused variable 'zsc' [-Wunused-variable] thrdzsc.c:95:5: warning: unused variable 'ps' [-Wunused-variable] thrdzsc.c:80:5: warning: unused variable 'temp' [-Wunused-variable] thrdzsc.c:79:2: warning: unused variable 'kk' [-Wunused-variable] thrdzsc.c:369:1: warning: control reaches end of non-void function [-Wreturn-type] thrdzsc.c:357:39: warning: 'tg_max' may be used uninitialized in this function [-Wuninitialized] thrdzsc.c:64:7: warning: 'tls' may be used uninitialized in this function [-Wuninitialized] thrdzsc.c:176:20: warning: 'k' may be used uninitialized in this function [-Wuninitialized] thrdzsc.c:64:7: warning: 'tlf' may be used uninitialized in this function [-Wuninitialized] rm -f libncbimmdb.a ar cru libncbimmdb.a corematx.o dvncode.o objmmdb1.o objmmdb2.o objmmdb3.o objcn3d.o mmdbapi.o mmdbapi1.o mmdbapi2.o mmdbapi3.o mmdbapi4.o mmdbentr.o vastsubs.o prunebsc.o objcdd.o cddutil.o cddposutil.o objmime.o strucapi.o thrdalgs.o thrdatd.o thrdbwfi.o thrdcpal.o thrdcpll.o thrdcprl.o thrdcxei.o thrddgri.o thrdrsmp.o thrdsal0.o thrdsalr.o thrdsalu.o thrdsgoi.o thrdslo0.o thrdslor.o thrdslou.o thrdspci.o thrdspea.o thrdspel.o thrdspni.o thrdttb0.o thrdttbi.o thrdzsc.o cp -p libncbimmdb.a ../lib ranlib ../lib/libncbimmdb.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF csim.c csim.c: In function 'set_pam_200': csim.c:165:2: warning: missing braces around initializer [-Wmissing-braces] csim.c:165:2: warning: (near initialization for 'wgts[0]') [-Wmissing-braces] csim.c:196:8: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:196:8: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c: In function 'set_pam_file': csim.c:228:12: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:228:12: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c: In function 'big_pass': csim.c:668:7: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:692:5: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c: In function 'diff1': csim.c:799:7: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:805:13: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:849:7: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:853:4: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:853:4: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:874:7: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:878:4: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:878:4: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:893:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c: In function 'locate': csim.c:974:7: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:991:5: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:1030:8: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:1043:5: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:1062:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1062:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1072:9: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1072:9: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1084:8: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:1110:12: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:1129:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1129:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1139:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1139:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1144:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c: In function 'small_pass': csim.c:1186:7: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:1212:5: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c: In function 'display': csim.c:1360:5: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] csim.c: In function 'set_pam_file': csim.c:227:18: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] csim.c: In function 'SIM': csim.c:1071:62: warning: 'dj' may be used uninitialized in this function [-Wuninitialized] csim.c:928:23: note: 'dj' was declared here csim.c:1071:51: warning: 'di' may be used uninitialized in this function [-Wuninitialized] csim.c:928:19: note: 'di' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF db_slist.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF dust.c dust.c: In function 'slpDust.isra.0': dust.c:655:23: warning: 'sintp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_dust.c blast_dust.c: In function 's_SlpDust': blast_dust.c:348:23: warning: 'sintp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF falign.c falign.c: In function 'fbld_table': falign.c:490:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:494:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'bbld_table': falign.c:517:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:521:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'rcbld_table': falign.c:544:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:548:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'ex_table': falign.c:567:2: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'free_all': falign.c:668:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'scan': falign.c:688:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:694:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:710:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c:719:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'fscan': falign.c:763:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:769:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'bscan': falign.c:794:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:800:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'rfscan': falign.c:870:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:876:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:881:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c:889:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'trcscan': falign.c:1476:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:1482:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'rclocal': falign.c:1547:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'enterS': falign.c:1897:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'local': falign.c:1958:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'align': falign.c:1999:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'calign': falign.c:2054:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'malign': falign.c:2109:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF g_any.c g_any.c: In function 'k_align': g_any.c:212:3: warning: array subscript has type 'char' [-Wchar-subscripts] g_any.c:229:4: warning: array subscript has type 'char' [-Wchar-subscripts] g_any.c:319:3: warning: array subscript has type 'char' [-Wchar-subscripts] g_any.c:322:3: warning: array subscript has type 'char' [-Wchar-subscripts] g_any.c: In function 'z_ALIGN': g_any.c:367:7: warning: variable 'check_score' set but not used [-Wunused-but-set-variable] g_any.c: In function 'CHECK_SCORE': g_any.c:492:3: warning: array subscript has type 'char' [-Wchar-subscripts] g_any.c:492:3: warning: array subscript has type 'char' [-Wchar-subscripts] g_any.c: At top level: g_any.c:428:13: warning: 'ALINE' defined but not used [-Wunused-variable] g_any.c:428:24: warning: 'BLINE' defined but not used [-Wunused-variable] g_any.c:428:35: warning: 'CLINE' defined but not used [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF sim2.c sim2.c: In function 'SIM2': sim2.c:19:16: warning: unused variable 'compB' [-Wunused-variable] sim2.c:17:26: warning: unused variable 'sapC' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF sim3.c sim3.c: In function 'locate': sim3.c:103:3: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:105:3: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:113:17: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:115:17: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:129:17: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:133:17: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:152:3: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:155:17: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c: At top level: sim3.c:806:13: warning: 'Print_Script' defined but not used [-Wunused-function] sim3.c:1048:13: warning: 'get_start_pos' defined but not used [-Wunused-function] sim3.c:1056:13: warning: 'get_current_pos' defined but not used [-Wunused-function] sim3.c:1067:16: warning: 'is_end_seg' defined but not used [-Wunused-function] sim3.c: In function 'locate': sim3.c:230:17: warning: 'paired_bj' may be used uninitialized in this function [-Wuninitialized] sim3.c:229:6: warning: 'paired_fj' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF sim4.c sim4.c: In function 'sim4x': sim4.c:630:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] sim4.c: In function 'greedy': sim4.c:1770:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] sim4.c:1794:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] sim4.c:1838:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] sim4.c:1962:19: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] sim4.c:1991:19: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] sim4.c:2037:19: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] sim4.c: In function 'DISPLAY': sim4.c:2625:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] sim4.c: At top level: sim4.c:2563:13: warning: 'S2A' defined but not used [-Wunused-function] sim4.c:2592:13: warning: 'DISPLAY' defined but not used [-Wunused-function] sim4.c:2499:13: warning: 'Print_Script' defined but not used [-Wunused-function] sim4.c: In function 'locate': sim4.c:2919:19: warning: 'paired_bj' may be used uninitialized in this function [-Wuninitialized] sim4.c:2918:7: warning: 'paired_fj' may be used uninitialized in this function [-Wuninitialized] sim4.c: In function 'sim4x': sim4.c:2112:37: warning: 'forth' may be used uninitialized in this function [-Wuninitialized] sim4.c:1609:18: note: 'forth' was declared here sim4.c:2112:22: warning: 'back' may be used uninitialized in this function [-Wuninitialized] sim4.c:1609:12: note: 'back' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF simutil.c simutil.c: In function 'make_align': simutil.c:495:9: warning: variable 'strand' set but not used [-Wunused-but-set-variable] simutil.c: At top level: simutil.c:344:17: warning: 'convert' defined but not used [-Wunused-function] simutil.c:814:16: warning: 're_cal_score' defined but not used [-Wunused-function] simutil.c:848:16: warning: 'is_alu_seq' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF slist.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF sec.c sec.c: In function 'Region': sec.c:268:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:268:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:292:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:292:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:321:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:321:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:345:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:345:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:428:8: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:428:8: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:504:11: warning: 'old_l' may be used uninitialized in this function [-Wuninitialized] sec.c:494:13: warning: 'ppj' may be used uninitialized in this function [-Wuninitialized] sec.c:493:7: warning: 'ppi' may be used uninitialized in this function [-Wuninitialized] sec.c:394:31: warning: 'i' may be used uninitialized in this function [-Wuninitialized] sec.c:503:7: warning: 'pi' may be used uninitialized in this function [-Wuninitialized] sec.c:513:13: warning: 'ej' may be used uninitialized in this function [-Wuninitialized] sec.c:400:8: warning: 'ei' may be used uninitialized in this function [-Wuninitialized] sec.c:511:13: warning: 'bj' may be used uninitialized in this function [-Wuninitialized] sec.c:468:13: warning: 'bi' may be used uninitialized in this function [-Wuninitialized] sec.c:513:11: warning: 'RB' may be used uninitialized in this function [-Wuninitialized] sec.c:494:13: warning: 'LB' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF tfuns.c tfuns.c: In function 'find_orf': tfuns.c:846:26: warning: unused variable 'into' [-Wunused-variable] tfuns.c:846:13: warning: unused variable 'infrom' [-Wunused-variable] tfuns.c: At top level: tfuns.c:956:13: warning: 'find_orf_from_circle' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF toasn3.c toasn3.c: In function 'FindOrg': toasn3.c:1270:17: warning: variable 'len' set but not used [-Wunused-but-set-variable] toasn3.c: In function 'CheckQualsWithComm': toasn3.c:1551:18: warning: variable 'orp' set but not used [-Wunused-but-set-variable] toasn3.c: In function 'CheckQuals': toasn3.c:1588:18: warning: variable 'orp' set but not used [-Wunused-but-set-variable] toasn3.c: In function 'CountSourceFeat': toasn3.c:2374:13: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] toasn3.c:2365:19: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] toasn3.c: In function 'TASNTrimInternalSemicolons': toasn3.c:3945:12: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] toasn3.c: In function 'ImpFeatToProtRef': toasn3.c:4610:13: warning: variable 'lfree' set but not used [-Wunused-but-set-variable] toasn3.c: In function 'RemovePeptideImpFeats': toasn3.c:4876:24: warning: variable 'ifp' set but not used [-Wunused-but-set-variable] toasn3.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] toasn3.c:1531:16: warning: 'GetQualValue' defined but not used [-Wunused-function] toasn3.c: In function 'GetOriginalBeforeAdjustment': toasn3.c:4144:29: warning: 'last' may be used uninitialized in this function [-Wuninitialized] toasn3.c: In function 'FixNucProtSet': toasn3.c:2017:21: warning: 'bseg' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF toporg.c toporg.c: In function 'ChkSegset': toporg.c:61:51: warning: variable 'is_title' set but not used [-Wunused-but-set-variable] toporg.c:60:17: warning: variable 'orp' set but not used [-Wunused-but-set-variable] toporg.c:57:17: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] toporg.c:52:17: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] toporg.c: In function 'ChkNucProt': toporg.c:593:51: warning: variable 'is_title' set but not used [-Wunused-but-set-variable] toporg.c: In function 'StripBSfromParts': toporg.c:1279:17: warning: variable 'empty' set but not used [-Wunused-but-set-variable] toporg.c:1278:17: warning: variable 'bsmp' set but not used [-Wunused-but-set-variable] toporg.c:1277:29: warning: variable 'set_vnp' set but not used [-Wunused-but-set-variable] toporg.c: In function 'MapsToGenref': toporg.c:1943:17: warning: variable 'loc' set but not used [-Wunused-but-set-variable] toporg.c:1938:17: warning: variable 'descr' set but not used [-Wunused-but-set-variable] toporg.c: In function 'FindOldLineage': toporg.c:2520:17: warning: variable 'lineage' set but not used [-Wunused-but-set-variable] toporg.c: In function 'StripBadTitleFromProteinProducts': toporg.c:4967:22: warning: variable 'tech' set but not used [-Wunused-but-set-variable] toporg.c: At top level: toporg.c:3009:13: warning: 'BarCodeTechToKeyword' defined but not used [-Wunused-function] toporg.c: In function 'MergeEquivCitSubs': toporg.c:3830:16: warning: 'csp1' may be used uninitialized in this function [-Wuninitialized] toporg.c: In function 'CheckMaps': toporg.c:1714:11: warning: 'to' may be used uninitialized in this function [-Wuninitialized] toporg.c:1695:24: note: 'to' was declared here toporg.c:1713:13: warning: 'from' may be used uninitialized in this function [-Wuninitialized] toporg.c:1695:18: note: 'from' was declared here toporg.c: In function 'ConvertSegSetToDeltaSeq': toporg.c:6667:29: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF pobutil.c pobutil.c: In function 'build_repeat_feat': pobutil.c:187:7: warning: unused variable 'c' [-Wunused-variable] pobutil.c: In function 'merge_StdSeg': pobutil.c:1033:7: warning: variable 'start_1' set but not used [-Wunused-but-set-variable] pobutil.c:1031:7: warning: unused variable 'overlap' [-Wunused-variable] pobutil.c: In function 'AluFeat': pobutil.c:2431:10: warning: variable 'my_userdata' set but not used [-Wunused-but-set-variable] In file included from /usr/include/string.h:642:0, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from ../include/pobutil.h:7, from pobutil.c:3: In function 'memset', inlined from 'FindHumanRepeats' at pobutil.c:2380:8: /usr/include/i386-linux-gnu/bits/string3.h:82:30: warning: call to '__warn_memset_zero_len' declared with attribute warning: memset used with constant zero length parameter; this could be due to transposed parameters [enabled by default] In function 'memset', inlined from 'FindHumanRepeats' at pobutil.c:2381:8: /usr/include/i386-linux-gnu/bits/string3.h:82:30: warning: call to '__warn_memset_zero_len' declared with attribute warning: memset used with constant zero length parameter; this could be due to transposed parameters [enabled by default] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF stsutil.c stsutil.c: In function 'InitSTSSearch_r': stsutil.c:270:10: warning: unused variable 'StsCount' [-Wunused-variable] stsutil.c: In function 'GetSTSEntry': stsutil.c:635:13: warning: variable 'p' set but not used [-Wunused-but-set-variable] stsutil.c: In function 'STSCalculateHash': stsutil.c:753:9: warning: array subscript has type 'char' [-Wchar-subscripts] stsutil.c: In function 'STSReverse': stsutil.c:771:9: warning: array subscript has type 'char' [-Wchar-subscripts] stsutil.c: In function 'InitHashTable': stsutil.c:910:21: warning: variable 'sts_uid' set but not used [-Wunused-but-set-variable] stsutil.c:910:13: warning: variable 'gb_uid' set but not used [-Wunused-but-set-variable] stsutil.c:908:23: warning: variable 'gi' set but not used [-Wunused-but-set-variable] stsutil.c:908:10: warning: variable 'id_sts' set but not used [-Wunused-but-set-variable] stsutil.c:907:23: warning: unused variable 'error' [-Wunused-variable] stsutil.c: At top level: stsutil.c:892:13: warning: 'STSHashInitFree' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF suggadj.c suggadj.c: In function 'score_possible_splice_sites': suggadj.c:874:1: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:875:1: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:878:1: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:879:1: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c: In function 'check_split_codon': suggadj.c:985:1: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:986:2: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:987:2: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:998:1: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:999:2: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:1000:2: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c: In function 'overlapping_fixer': suggadj.c:1370:5: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:1371:6: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:1373:6: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:1375:6: warning: array subscript has type 'char' [-Wchar-subscripts] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF suggest.c suggest.c: In function 'get_frames': suggest.c:458:4: warning: array subscript has type 'char' [-Wchar-subscripts] suggest.c:458:4: warning: array subscript has type 'char' [-Wchar-subscripts] suggest.c: At top level: suggest.c:1222:1: warning: 'fprintf_m_stk_entry' defined but not used [-Wunused-function] suggest.c:1331:13: warning: 'ReportSuggestIntervalsError' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF suggslp.c suggslp.c: In function 'MakeReverseSequence': suggslp.c:190:3: warning: array subscript has type 'char' [-Wchar-subscripts] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast.c blast.c: In function 'BlastReevaluateWithAmbiguities': blast.c:2954:24: warning: variable 'query_end' set but not used [-Wunused-but-set-variable] blast.c:2949:16: warning: variable 'hspcnt' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastGetVirtualOIDList': blast.c:3179:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] blast.c: In function 'BlastGetDbChunk': blast.c:3210:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] blast.c: In function 'BlastCreateQueryDNAP': blast.c:4100:11: warning: variable 'strand_option' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastWordFinder_contig': blast.c:7094:16: warning: variable 'bits_to_shift' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastWordExtend': blast.c:7835:46: warning: variable 'leftscore' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastNewWordExtend': blast.c:7982:46: warning: variable 'leftscore' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastNtWordFinder_mh': blast.c:8843:23: warning: variable 'bits_to_shift' set but not used [-Wunused-but-set-variable] blast.c:8842:103: warning: variable 'compression_factor' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastNtWordFinder': blast.c:9076:14: warning: variable 'bits_to_shift' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastSaveCurrentHitlist': blast.c:10115:11: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] blast.c:9785:7: warning: variable 'query_length' set but not used [-Wunused-but-set-variable] blast.c: In function 'SumHSPEvalue': blast.c:10588:9: warning: variable 'gap_size' set but not used [-Wunused-but-set-variable] blast.c: In function 'link_hsps': blast.c:11267:10: warning: variable 'frame_change' set but not used [-Wunused-but-set-variable] blast.c: In function 'blastMergeFilterLocs': blast.c:3983:16: warning: 'dup_slp' may be used uninitialized in this function [-Wuninitialized] blast.c: In function 'BlastLinkHsps': blast.c:10455:41: warning: 'orig_hitlist' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blastutl.c blastutl.c: In function 'BlastSeqLocFilterEx': blastutl.c:7554:11: warning: statement with no effect [-Wunused-value] blastutl.c: In function 'BlastPreliminaryGappedScore': blastutl.c:9853:30: warning: variable 'query_length' set but not used [-Wunused-but-set-variable] blastutl.c: In function 'BlastGetGappedScore': blastutl.c:10282:11: warning: statement with no effect [-Wunused-value] blastutl.c: In function 'BlastNtFindWords': blastutl.c:11445:10: warning: 'end' may be used uninitialized in this function [-Wuninitialized] blastutl.c: In function 'BlastNewFindWordsEx': blastutl.c:12129:23: warning: 'start_score' may be used uninitialized in this function [-Wuninitialized] blastutl.c:12118:29: warning: 'first_score' may be used uninitialized in this function [-Wuninitialized] blastutl.c:12110:23: warning: 'diff' may be used uninitialized in this function [-Wuninitialized] blastutl.c: In function 'BlastNewFindWords_Old': blastutl.c:11931:18: warning: 'start_score' may be used uninitialized in this function [-Wuninitialized] blastutl.c:11924:17: warning: 'first_score' may be used uninitialized in this function [-Wuninitialized] blastutl.c:11915:11: warning: 'diff' may be used uninitialized in this function [-Wuninitialized] blastutl.c: In function 'BlastFindWords': blastutl.c:11623:8: warning: 'stop' may be used uninitialized in this function [-Wuninitialized] blastutl.c:11717:15: warning: 'start_score' may be used uninitialized in this function [-Wuninitialized] blastutl.c:11704:17: warning: 'first_score' may be used uninitialized in this function [-Wuninitialized] blastutl.c:11695:11: warning: 'diff' may be used uninitialized in this function [-Wuninitialized] blastutl.c: In function 'RealBlastGetGappedAlignmentTraceback': blastutl.c:9377:56: warning: 'seqalign_array' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blastool.c blastool.c: In function 'OOFBlastHSPGetNumIdentical': blastool.c:6081:9: warning: variable 'context' set but not used [-Wunused-but-set-variable] blastool.c: In function 'BlastCreateVirtualOIDList': blastool.c:2556:24: warning: 'gilist' may be used uninitialized in this function [-Wuninitialized] blastool.c: In function 'BlastInsertList2Heap': blastool.c:3600:13: warning: 'query_length' may be used uninitialized in this function [-Wuninitialized] blastool.c: In function 'BlastFreeHeap': blastool.c:3692:13: warning: 'query_length' may be used uninitialized in this function [-Wuninitialized] blastool.c: In function 'BLASTFilterOverlapRegions': blastool.c:4531:24: warning: 'next_tail' may be used uninitialized in this function [-Wuninitialized] blastool.c: In function 'BlastPrintAlignInfo': blastool.c:4800:23: warning: 'sap' may be used uninitialized in this function [-Wuninitialized] blastool.c: In function 'MegaBlastPrintAlignInfo': blastool.c:5321:17: warning: 'subject_seq_buffer' may be used uninitialized in this function [-Wuninitialized] blastool.c:5320:17: warning: 'query_seq_buffer' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blastconcat.c blastconcat.c: In function 'BlastMakeFakeBspConcat': blastconcat.c:648:12: warning: variable 'slp' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF splutil.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF gapxdrop.c gapxdrop.c: In function 'ALIGN_EX': gapxdrop.c:864:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] gapxdrop.c:867:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF bandalg0.c bandalg0.c: In function 'g_band0_align': bandalg0.c:273:9: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] bandalg0.c:266:12: warning: 'c' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF bandalg1.c bandalg1.c: In function 'gband_quadratic': bandalg1.c:54:14: warning: variable 'j' set but not used [-Wunused-but-set-variable] bandalg1.c: In function 'g_band1_align': bandalg1.c:205:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] bandalg1.c: In function 'gband_quadratic': bandalg1.c:200:11: warning: 'c' may be used uninitialized in this function [-Wuninitialized] bandalg1.c:164:17: note: 'c' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF bandalg2.c bandalg2.c: In function 'gb_linear_align': bandalg2.c:208:24: warning: variable 'misma' set but not used [-Wunused-but-set-variable] bandalg2.c:208:17: warning: variable 'match' set but not used [-Wunused-but-set-variable] bandalg2.c:207:18: warning: variable 'AA' set but not used [-Wunused-but-set-variable] bandalg2.c:326:9: warning: 'c' may be used uninitialized in this function [-Wuninitialized] bandalg2.c:494:15: warning: 'Y' may be used uninitialized in this function [-Wuninitialized] bandalg2.c:494:15: warning: 'X' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF bandalg3.c bandalg3.c: In function 'gband_linear_qgap': bandalg3.c:54:14: warning: variable 'j' set but not used [-Wunused-but-set-variable] bandalg3.c:292:21: warning: 'Y' may be used uninitialized in this function [-Wuninitialized] bandalg3.c:185:28: note: 'Y' was declared here bandalg3.c:291:3: warning: 'X' may be used uninitialized in this function [-Wuninitialized] bandalg3.c:185:25: note: 'X' was declared here bandalg3.c:217:11: warning: 'c' may be used uninitialized in this function [-Wuninitialized] bandalg3.c:180:17: note: 'c' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF bandalg4.c bandalg4.c: In function 'g_band4_align_small': bandalg4.c:826:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] bandalg4.c:829:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] bandalg4.c:630:8: warning: variable 'band' set but not used [-Wunused-but-set-variable] bandalg4.c: In function 'g_band4_align': bandalg4.c:286:13: warning: 'c' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:534:22: warning: 'Y' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:534:12: warning: 'X' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:544:3: warning: 'k' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:824:27: warning: 'Y' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:640:28: note: 'Y' was declared here bandalg4.c:823:3: warning: 'X' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:640:25: note: 'X' was declared here bandalg4.c:694:10: warning: 'c' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:634:17: note: 'c' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF bandalg5.c bandalg5.c: In function 'gband_q3gap': bandalg5.c:56:14: warning: variable 'j' set but not used [-Wunused-but-set-variable] bandalg5.c: In function 'g_band5_align': bandalg5.c:292:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] bandalg5.c:295:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] bandalg5.c: In function 'gband_q3gap': bandalg5.c:320:20: warning: 'Y' may be used uninitialized in this function [-Wuninitialized] bandalg5.c:146:28: note: 'Y' was declared here bandalg5.c:319:15: warning: 'X' may be used uninitialized in this function [-Wuninitialized] bandalg5.c:146:25: note: 'X' was declared here bandalg5.c:180:11: warning: 'c' may be used uninitialized in this function [-Wuninitialized] bandalg5.c:140:17: note: 'c' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF bandalgn.c bandalgn.c: In function 'ExtendSeqAlign': bandalgn.c:1113:22: warning: variable 'ddp' set but not used [-Wunused-but-set-variable] bandalgn.c: In function 'CC_ExtendSeqAlign': bandalgn.c:1188:22: warning: variable 'ddp' set but not used [-Wunused-but-set-variable] bandalgn.c: At top level: bandalgn.c:699:14: warning: 'HSblastna_to_ncbi4na' defined but not used [-Wunused-variable] bandalgn.c: In function 'LocalBandToEditBlock': bandalgn.c:463:20: warning: 'edit_block' may be used uninitialized in this function [-Wuninitialized] bandalgn.c: In function 'SetLowUpFromBlast': bandalgn.c:1053:14: warning: 'val' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1053:14: warning: 'maxsc' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1060:7: warning: 'alnlen' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1060:7: warning: 'maxlen' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1070:9: warning: 'maxdi_up' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1069:9: warning: 'mindi_low' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1048:10: warning: 'maxdi' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1063:10: warning: 'mindi' may be used uninitialized in this function [-Wuninitialized] bandalgn.c: In function 'GetAlignExtremes': bandalgn.c:1309:7: warning: 'y2' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1308:7: warning: 'y1' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1307:7: warning: 'x2' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1306:7: warning: 'x1' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blastkar.c blastkar.c:1053:21: warning: 'blosum62_20_values' defined but not used [-Wunused-variable] blastkar.c:1121:13: warning: 'blosum62_20_prefs' defined but not used [-Wunused-variable] blastkar.c:2347:25: warning: 'Dayhoff_prob' defined but not used [-Wunused-variable] blastkar.c:2373:25: warning: 'Altschul_prob' defined but not used [-Wunused-variable] blastkar.c: In function 'BLAST_ScoreBlkNew': blastkar.c:1213:29: warning: 'sctp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF actutils.c actutils.c: In function 'SlideToHit': actutils.c:346:23: warning: variable 'done' set but not used [-Wunused-but-set-variable] actutils.c:346:13: warning: variable 'inIsland' set but not used [-Wunused-but-set-variable] actutils.c: In function 'ResolveSpinConflict': actutils.c:1484:35: warning: unused variable 'row2_conflict' [-Wunused-variable] actutils.c:1484:12: warning: unused variable 'row1_conflict' [-Wunused-variable] actutils.c: In function 'ACT_FindBestAlnByDotPlot': actutils.c:2002:20: warning: variable 'strand' set but not used [-Wunused-but-set-variable] actutils.c:2001:20: warning: variable 'start2' set but not used [-Wunused-but-set-variable] actutils.c:2000:20: warning: variable 'start1' set but not used [-Wunused-but-set-variable] actutils.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] actutils.c:749:13: warning: 'StateTableSearch' defined but not used [-Wunused-function] actutils.c:1375:16: warning: 'am_isa_gap' defined but not used [-Wunused-function] actutils.c:1392:13: warning: 'am_fix_strand' defined but not used [-Wunused-function] actutils.c:1654:16: warning: 'SpinsConflict' defined but not used [-Wunused-function] actutils.c:2927:13: warning: 'MapBioseqToBioseqSpecial' defined but not used [-Wunused-function] actutils.c:3132:13: warning: 'DumpAlignments' defined but not used [-Wunused-function] actutils.c: In function 'GetOldBlastAlignmentPiece': actutils.c:3128:11: warning: 'program' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF posit.c posit.c: In function 'posDemographics': posit.c:1103:17: warning: variable 'numSeqAligns' set but not used [-Wunused-but-set-variable] posit.c: In function 'posFreqsToMatrix': posit.c:1672:45: warning: operation on '*(*(posSearch->posPrivateMatrix + (unsigned int)((unsigned int)length * 4u)) + (unsigned int)((unsigned int)a * 4u))' may be undefined [-Wsequence-point] posit.c: In function 'posComputePseudoFreqs': posit.c:1833:16: warning: variable 'lambda' set but not used [-Wunused-but-set-variable] posit.c: In function 'WposComputation': posit.c:1980:13: warning: variable 'numSeqAligns' set but not used [-Wunused-but-set-variable] posit.c: In function 'posPrintInformation': posit.c:2311:8: warning: variable 'querySize' set but not used [-Wunused-but-set-variable] posit.c: In function 'posFindAlignmentDimensions': posit.c:3056:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c:3062:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c:3071:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c:3078:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c: In function 'posPreprocessAlignment': posit.c:3129:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c:3144:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c: In function 'posReadAlignment': posit.c:3245:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c: In function 'posFindAlignmentDimensions': posit.c:3079:20: warning: 'testCountSeqs' may be used uninitialized in this function [-Wuninitialized] posit.c: In function 'posComputeSequenceWeights': posit.c:1440:36: warning: 'intervalSigma' may be used uninitialized in this function [-Wuninitialized] posit.c:1417:18: warning: 'Sigma' may be used uninitialized in this function [-Wuninitialized] posit.c: In function 'posReadCheckpoint': posit.c:2865:28: warning: 'j' may be used uninitialized in this function [-Wuninitialized] posit.c:2694:11: note: 'j' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF lookup.c lookup.c: In function 'lookup_get_memory': lookup.c:555:28: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] lookup.c: In function 'MegaBlastBuildLookupTable': lookup.c:1047:35: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] lookup.c:1051:35: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] lookup.c:1078:31: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] lookup.c:1082:31: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] lookup.c:914:25: warning: variable 'extra_code' set but not used [-Wunused-but-set-variable] lookup.c:975:10: warning: 'word_weight' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF readdb.c readdb.c: In function 'readdb_parse_db_names': readdb.c:2486:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] readdb.c: In function 'FindBlastDBFileEx': readdb.c:3463:33: warning: unused variable 'envp' [-Wunused-variable] readdb.c: In function 'readdb_new_internalEx': readdb.c:3541:25: warning: unused variable 'envp' [-Wunused-variable] readdb.c: In function 'readdb_get_link': readdb.c:4735:12: warning: variable 'loaded_new' set but not used [-Wunused-but-set-variable] readdb.c:4734:24: warning: variable 'last_used' set but not used [-Wunused-but-set-variable] readdb.c: In function 'readdb_check_oid': readdb.c:4879:18: warning: comparisons like 'X<=Y<=Z' do not have their mathematical meaning [-Wparentheses] readdb.c: In function 'readdb_seqid2fasta': readdb.c:5219:22: warning: unused variable 'dummy_gi' [-Wunused-variable] readdb.c:5163:13: warning: unused variable 'chptr' [-Wunused-variable] readdb.c: In function 'FDBCleanUpInProgress': readdb.c:8100:9: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat] readdb.c: In function 'FDBLoadMembershipsTable': readdb.c:8248:21: warning: variable 'fn_name' set but not used [-Wunused-but-set-variable] readdb.c: In function 'SeqIdE2Index': readdb.c:8558:13: warning: unused variable 'tmp' [-Wunused-variable] readdb.c:8557:11: warning: unused variable 'tmptype' [-Wunused-variable] readdb.c: In function 'SeqIdSetE2Index': readdb.c:8862:14: warning: variable 'oldanp' set but not used [-Wunused-but-set-variable] readdb.c: In function 'ScanDIFile': readdb.c:11662:17: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'int' [-Wformat] readdb.c:11662:17: warning: format '%d' expects argument of type 'int', but argument 4 has type 'Nlm_CharPtr' [-Wformat] readdb.c: In function 'Fastacmd_Search_ex': readdb.c:12058:22: warning: variable 'guess_gi' set but not used [-Wunused-but-set-variable] readdb.c: In function 'DumpOneSequence': readdb.c:12395:14: warning: unused variable 'numeric_id' [-Wunused-variable] readdb.c: At top level: ../include/ncbisami.h:183:14: warning: 'PowersOfTwo' defined but not used [-Wunused-variable] ../include/ncbisami.h:191:14: warning: 'OneBit' defined but not used [-Wunused-variable] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] readdb.c:12803:1: warning: 'readdb_preload_index' defined but not used [-Wunused-function] readdb.c: In function 'readdb_get_taxonomy_names': readdb.c:5662:28: warning: 'ufp_last' may be used uninitialized in this function [-Wuninitialized] readdb.c: In function 'readdb_get_descriptor': readdb.c:6651:44: warning: 'new_defline_length' may be used uninitialized in this function [-Wuninitialized] readdb.c: In function 'GetAccList': readdb.c:11799:29: warning: 'AccListLast' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbisam.c ncbisam.c: In function 'ISAMMakeStringIndex': ncbisam.c:842:22: warning: unused variable 'file_pos' [-Wunused-variable] ncbisam.c: In function 'ISAMInitSearch': ncbisam.c:1399:10: warning: variable 'reserved2' set but not used [-Wunused-but-set-variable] ncbisam.c: In function 'ISAMMakeIndex': ncbisam.c:984:21: warning: 'KeyDataInfo' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:1019:42: warning: 'KeyInfo' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:983:14: note: 'KeyInfo' was declared here ncbisam.c: In function 'ISAMCreateDatabase': ncbisam.c:1372:12: warning: 'prevterm' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:1331:29: warning: 'field_in' may be used uninitialized in this function [-Wuninitialized] ncbisam.c: In function 'NISAMSearch': ncbisam.c:1814:32: warning: 'KeyDataPageStart' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:1812:28: warning: 'KeyPageStart' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:1750:19: warning: 'KeyPage' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:1593:24: warning: 'SampleNum' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:1618:27: note: 'SampleNum' was declared here ncbisam.c: In function 'SISAMSearch': ncbisam.c:2373:8: warning: 'SampleNum' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbisort.c ncbisort.c: In function 'SORTFracCompare': ncbisort.c:692:12: warning: type defaults to 'int' in declaration of 'tmpa' [-Wimplicit-int] ncbisort.c:692:30: warning: type defaults to 'int' in declaration of 'tmpb' [-Wimplicit-int] ncbisort.c: At top level: ../include/ncbisrti.h:213:13: warning: 'inthandler' declared 'static' but never defined [-Wunused-function] ncbisort.c: In function 'SORTMergeFPS': ncbisort.c:1110:10: warning: 'savealloc' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF salign.c salign.c: In function 'BandAlignTwoSeqLocsFunc': salign.c:173:13: warning: variable 'is_prot' set but not used [-Wunused-but-set-variable] salign.c: In function 'SortBlastHits': salign.c:391:15: warning: variable 'totalvalmax' set but not used [-Wunused-but-set-variable] salign.c: In function 'link_solution': salign.c:1188:15: warning: unused variable 'first' [-Wunused-variable] salign.c: In function 'SortBlastHits': salign.c:411:6: warning: 'salpdup' may be used uninitialized in this function [-Wuninitialized] salign.c:455:22: warning: 'salptmp' may be used uninitialized in this function [-Wuninitialized] salign.c:445:28: warning: 'preselect' may be used uninitialized in this function [-Wuninitialized] salign.c: In function 'TranslateSeqLoc.constprop.6': salign.c:660:3: warning: 'slpp' may be used uninitialized in this function [-Wuninitialized] salign.c: In function 'BlastBandAlignTwoSeqLocs.isra.4': salign.c:1433:17: warning: 'tail' may be used uninitialized in this function [-Wuninitialized] salign.c:1408:15: note: 'tail' was declared here salign.c:1348:38: warning: 'stop' may be used uninitialized in this function [-Wuninitialized] salign.c:1301:30: note: 'stop' was declared here salign.c:1348:38: warning: 'start1' may be used uninitialized in this function [-Wuninitialized] salign.c:1301:22: note: 'start1' was declared here salign.c:1270:38: warning: 'stop' may be used uninitialized in this function [-Wuninitialized] salign.c:1229:30: note: 'stop' was declared here salign.c:1270:38: warning: 'start1' may be used uninitialized in this function [-Wuninitialized] salign.c:1229:22: note: 'start1' was declared here salign.c: In function 'SeqLocListToSeqAlign': salign.c:1672:23: warning: 'master_slp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF salptool.c salptool.c: In function 'MergeTwoDspBySIM4': salptool.c:285:10: warning: variable 'has_overlap' set but not used [-Wunused-but-set-variable] salptool.c:281:7: warning: variable 'gap' set but not used [-Wunused-but-set-variable] salptool.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] salptool.c:46:13: warning: 'SeqAnnotWrite' defined but not used [-Wunused-function] salptool.c:838:13: warning: 'SeqLocTrimPolyATail' defined but not used [-Wunused-function] salptool.c:1267:16: warning: 'need_recompute' defined but not used [-Wunused-function] salptool.c:1453:13: warning: 'getlengthforid' defined but not used [-Wunused-function] salptool.c:1468:13: warning: 'showtextalign_fromalign' defined but not used [-Wunused-function] salptool.c:1518:24: warning: 'OrderBestHits' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF urkutil.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF urkpcc.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF urkptpf.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF urkepi.c urkepi.c: In function 'PredictEpiI0': urkepi.c:214:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:239:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:240:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:241:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:263:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:264:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:265:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c: In function 'OptimizeEpiComp': urkepi.c:605:11: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:621:11: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:651:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:657:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c: In function 'OptimizeEpiHP': urkepi.c:782:13: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:797:13: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:837:11: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c: In function 'OptimizeEpiProbFunc': urkepi.c:982:13: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:994:13: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c: In function 'FilterEpi': urkepi.c:1053:21: warning: 'right' may be used uninitialized in this function [-Wuninitialized] urkepi.c:936:56: note: 'right' was declared here urkepi.c:1052:20: warning: 'left' may be used uninitialized in this function [-Wuninitialized] urkepi.c:936:50: note: 'left' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF urkfltr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF urkdust.c urkdust.c: In function 'DustMe_h': urkdust.c:196:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses] urkdust.c: In function 'DustForGraph': urkdust.c:776:17: warning: variable 'drphead' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF urksigu.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF seg.c seg.c: In function 'getprob': seg.c:935:15: warning: 'ans2' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF urkbias.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF urkcnsrt.c urkcnsrt.c:1203:13: warning: 'ScanFrame' defined but not used [-Wunused-function] urkcnsrt.c: In function 'Scan3Frames': urkcnsrt.c:1385:5: warning: 'length' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF urktree.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF pseed3.c pseed3.c: In function 'SeedPruneHitsFromSeedReturn': pseed3.c:230:17: warning: variable 'curSegs' set but not used [-Wunused-but-set-variable] pseed3.c: In function 'seedEngineCore': pseed3.c:507:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] pseed3.c: In function 'output_hits': pseed3.c:1202:10: warning: variable 'posBaseIndex' set but not used [-Wunused-but-set-variable] pseed3.c: In function 'init_order': pseed3.c:1483:2: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1483:2: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1487:9: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1489:2: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1490:4: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1493:6: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1494:8: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1494:8: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1496:4: warning: array subscript has type 'char' [-Wchar-subscripts] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF pattern1.c pattern1.c: In function 'init_pattern': pattern1.c:286:6: warning: array subscript has type 'char' [-Wchar-subscripts] pattern1.c:303:6: warning: array subscript has type 'char' [-Wchar-subscripts] pattern1.c:317:6: warning: array subscript has type 'char' [-Wchar-subscripts] pattern1.c: In function 'find_hitsS_DNA': pattern1.c:534:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] pattern1.c:547:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] pattern1.c: At top level: pattern1.c:744:8: warning: return type defaults to 'int' [-Wreturn-type] pattern1.c: In function 'and': pattern1.c:750:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] pattern1.c: In function 'align': pattern1.c:1102:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] pattern1.c:1158:8: warning: 'CDrow' may be used uninitialized in this function [-Wuninitialized] pattern1.c:1097:15: warning: 'tempCC' may be used uninitialized in this function [-Wuninitialized] pattern1.c: In function 'get_patL': pattern1.c:1348:42: warning: 'j' may be used uninitialized in this function [-Wuninitialized] pattern1.c: In function 'get_patLL': pattern1.c:1393:5: warning: 'pos' may be used uninitialized in this function [-Wuninitialized] pattern1.c: In function 'init_pattern': pattern1.c:358:7: warning: 'tj' may be used uninitialized in this function [-Wuninitialized] pattern1.c: In function 'align_of_pattern': pattern1.c:1506:30: warning: 'data' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF impatool.c impatool.c: In function 'IMPALAPrintHelp': impatool.c:301:20: warning: 'ret_buffer' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF posit2.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF mbalign.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF vecscrn.c vecscrn.c: In function 'VSPrintOverviewFromSeqLocs': vecscrn.c:1078:9: warning: 'tmp' may be used uninitialized in this function [-Wuninitialized] vecscrn.c: In function 'VSPrintListFromSeqLocs': vecscrn.c:1188:9: warning: 'tmp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF mblast.c mblast.c: In function 'BioseqMegaBlastEngineCore': mblast.c:961:12: warning: statement with no effect [-Wunused-value] mblast.c:987:12: warning: statement with no effect [-Wunused-value] mblast.c:942:14: warning: variable 'seqalign' set but not used [-Wunused-but-set-variable] mblast.c: In function 'MegaBlastSetUpSearchInternalByLoc': mblast.c:1167:16: warning: variable 'avglen' set but not used [-Wunused-but-set-variable] mblast.c: In function 'MegaBlastPackAlignmentsByQuery': mblast.c:1829:14: warning: variable 'slp' set but not used [-Wunused-but-set-variable] mblast.c: In function 'MegaBlastWordFinder_disc_1b': mblast.c:2372:32: warning: variable 'mask' set but not used [-Wunused-but-set-variable] mblast.c: In function 'MegaBlastPackAlignmentsByQuery': mblast.c:1864:19: warning: 'sap' may be used uninitialized in this function [-Wuninitialized] mblast.c: In function 'MegaBlastGappedAlign': mblast.c:2920:35: warning: 'gap_align' may be used uninitialized in this function [-Wuninitialized] mblast.c: In function 'MegaBlastWordFinder_disc': mblast.c:2250:53: warning: 'ecode2' may be used uninitialized in this function [-Wuninitialized] mblast.c:2151:47: warning: 'ecode1' may be used uninitialized in this function [-Wuninitialized] mblast.c: In function 'MegaBlastWordFinder': mblast.c:2711:51: warning: 'ecode2' may be used uninitialized in this function [-Wuninitialized] mblast.c:2373:17: note: 'ecode2' was declared here mblast.c:2475:52: warning: 'ecode1' may be used uninitialized in this function [-Wuninitialized] mblast.c:2373:9: note: 'ecode1' was declared here mblast.c: In function 'MegaBlastGapInfoToSeqAlign': mblast.c:3504:16: warning: 'seqalign' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF rpsutil.c rpsutil.c: In function 'RPSBlastSearchLight': rpsutil.c:1838:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] rpsutil.c: In function 'RPSBgetCddHits': rpsutil.c:2210:21: warning: variable 'found_score' set but not used [-Wunused-but-set-variable] rpsutil.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] rpsutil.c: In function 'getAuxInformation': rpsutil.c:398:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:404:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:405:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:406:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:407:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:408:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:409:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:410:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:415:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:416:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c: In function 'RPSAlignTraceBack': rpsutil.c:1444:32: warning: 'posMatrix' may be used uninitialized in this function [-Wuninitialized] rpsutil.c:1433:22: warning: 'rev_subject_length' may be used uninitialized in this function [-Wuninitialized] rpsutil.c: In function 'RPSCalcEValue': rpsutil.c:1269:30: warning: 'posMatrix' may be used uninitialized in this function [-Wuninitialized] rpsutil.c: In function 'RPSBgetCddHits': rpsutil.c:2238:13: warning: 'dbname' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF kappa.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF xmlblast.c xmlblast.c: In function 'PSIXmlInit': xmlblast.c:1239:13: warning: variable 'retval' set but not used [-Wunused-but-set-variable] xmlblast.c: In function 'BXMLGetSeqLineForStdSeg': xmlblast.c:491:34: warning: 'genetic_code2' may be used uninitialized in this function [-Wuninitialized] xmlblast.c: In function 'BXMLSeqAlignToHits': xmlblast.c:867:36: warning: 'hspp' may be used uninitialized in this function [-Wuninitialized] xmlblast.c: In function 'SeqAlignToHits': xmlblast.c:1646:24: warning: 'hspp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF bxmlobj.c bxmlobj.c: In function 'BlastOutputAsnRead': bxmlobj.c:96:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] bxmlobj.c: In function 'ParametersAsnRead': bxmlobj.c:361:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] bxmlobj.c:360:12: warning: unused variable 'isError' [-Wunused-variable] bxmlobj.c: In function 'IterationAsnRead': bxmlobj.c:613:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] bxmlobj.c: In function 'StatisticsAsnRead': bxmlobj.c:829:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] bxmlobj.c:828:12: warning: unused variable 'isError' [-Wunused-variable] bxmlobj.c: In function 'HitAsnRead': bxmlobj.c:1039:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] bxmlobj.c: In function 'HspAsnRead': bxmlobj.c:1244:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] bxmlobj.c:1243:12: warning: unused variable 'isError' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF dotseq.c dotseq.c:97:3: warning: missing braces around initializer [-Wmissing-braces] dotseq.c:97:3: warning: (near initialization for 'DOTblosum62[0]') [-Wmissing-braces] dotseq.c: In function 'DOT_BuildPLookup': dotseq.c:887:31: warning: variable 'found_ambig' set but not used [-Wunused-but-set-variable] dotseq.c:885:19: warning: unused variable 'threshold' [-Wunused-variable] dotseq.c:883:19: warning: unused variable 'index' [-Wunused-variable] dotseq.c: In function 'DOT_ComputeHits': dotseq.c:1043:47: warning: variable 'q_end' set but not used [-Wunused-but-set-variable] dotseq.c:1041:19: warning: unused variable 'saved_index' [-Wunused-variable] dotseq.c:1039:19: warning: unused variable 'threshold' [-Wunused-variable] dotseq.c: In function 'DOT_SPI_FindBestAlnByDotPlot': dotseq.c:2016:20: warning: variable 'strand' set but not used [-Wunused-but-set-variable] dotseq.c:2015:20: warning: variable 'start2' set but not used [-Wunused-but-set-variable] dotseq.c:2014:20: warning: variable 'start1' set but not used [-Wunused-but-set-variable] dotseq.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] dotseq.c: In function 'DOT_BuildHitList': dotseq.c:1286:9: warning: 'index' may be used uninitialized in this function [-Wuninitialized] dotseq.c:1310:19: note: 'index' was declared here dotseq.c:1266:31: warning: 'hitlist' may be used uninitialized in this function [-Wuninitialized] dotseq.c:1309:19: note: 'hitlist' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF spidey.c spidey.c: In function 'SPI_PrintResult': spidey.c:1736:21: warning: variable 'offset' set but not used [-Wunused-but-set-variable] spidey.c: In function 'SPI_AlnSinglemRNAToPieces': spidey.c:2850:4: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses] spidey.c: In function 'SPI_FillInLastmRNAHoles': spidey.c:6295:21: warning: variable 'internal' set but not used [-Wunused-but-set-variable] spidey.c: In function 'SPI_FindBestAlnByDotPlot': spidey.c:6441:20: warning: variable 'strand' set but not used [-Wunused-but-set-variable] spidey.c:6440:20: warning: variable 'start2' set but not used [-Wunused-but-set-variable] spidey.c:6439:20: warning: variable 'start1' set but not used [-Wunused-but-set-variable] spidey.c: In function 'SPI_ConnectAlnPieces': spidey.c:7810:30: warning: variable 'tmparray' set but not used [-Wunused-but-set-variable] spidey.c:7796:25: warning: variable 'sfpprev' set but not used [-Wunused-but-set-variable] spidey.c: In function 'SPI_AdjustSplicesInPieces': spidey.c:8444:23: warning: variable 'minus' set but not used [-Wunused-but-set-variable] spidey.c: In function 'SPI_CheckMrnaOrder': spidey.c:10293:22: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses] spidey.c:10297:25: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses] spidey.c:10310:22: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses] spidey.c:10312:25: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses] spidey.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF motif.c motif.c: In function 'MOT_FindPolyA': motif.c:86:18: warning: variable 'buf' set but not used [-Wunused-but-set-variable] motif.c: In function 'MOT_FindKozak': motif.c:216:18: warning: variable 'buf' set but not used [-Wunused-but-set-variable] motif.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blfmtutl.c blfmtutl.c: In function 'BlastPrintTabularResults': blfmtutl.c:1110:13: warning: 'alignments_count' may be used uninitialized in this function [-Wuninitialized] blfmtutl.c:1328:19: warning: 's_end' may be used uninitialized in this function [-Wuninitialized] blfmtutl.c:1327:21: warning: 's_start' may be used uninitialized in this function [-Wuninitialized] blfmtutl.c:1326:19: warning: 'q_end' may be used uninitialized in this function [-Wuninitialized] blfmtutl.c:1325:21: warning: 'q_start' may be used uninitialized in this function [-Wuninitialized] blfmtutl.c:1069:20: warning: 'query_id' may be used uninitialized in this function [-Wuninitialized] blfmtutl.c: In function 'BlastSetUserErrorString': blfmtutl.c:1389:26: warning: 'title' may be used uninitialized in this function [-Wuninitialized] rm -f libncbitool.a ar cru libncbitool.a csim.o db_slist.o dust.o blast_dust.o falign.o g_any.o sim2.o sim3.o sim4.o simutil.o slist.o sec.o tfuns.o toasn3.o toporg.o pobutil.o stsutil.o suggadj.o suggest.o suggslp.o blast.o blastutl.o blastool.o blastconcat.o splutil.o gapxdrop.o bandalg0.o bandalg1.o bandalg2.o bandalg3.o bandalg4.o bandalg5.o bandalgn.o blastkar.o actutils.o posit.o lookup.o readdb.o ncbisam.o ncbisort.o salign.o salptool.o urkutil.o urkpcc.o urkptpf.o urkepi.o urkfltr.o urkdust.o urksigu.o seg.o urkbias.o urkcnsrt.o urktree.o pseed3.o pattern1.o impatool.o posit2.o mbalign.o vecscrn.o mblast.o rpsutil.o kappa.o xmlblast.o bxmlobj.o dotseq.o spidey.o motif.o blfmtutl.o cp -p libncbitool.a ../lib ranlib ../lib/libncbitool.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF matrix_frequency_data.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF compo_mode_condition.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF composition_adjustment.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF nlm_linear_algebra.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF optimize_target_freq.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF compo_heap.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF smith_waterman.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF redo_alignment.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF unified_pvalues.c rm -f libblastcompadj.a ar cru libblastcompadj.a matrix_frequency_data.o compo_mode_condition.o composition_adjustment.o nlm_linear_algebra.o optimize_target_freq.o compo_heap.o smith_waterman.o redo_alignment.o unified_pvalues.o cp -p libblastcompadj.a ../lib ranlib ../lib/libblastcompadj.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF gdfontg.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF gdfontmb.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF gdfontt.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF pictogif.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF gdfontl.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF gdfonts.c gcc -DWIN_GIF -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbidrwg.c ncbidrwg.c: In function 'Nlm_SetFontData': ncbidrwg.c:489:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_GetFontData': ncbidrwg.c:501:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_FindFont': ncbidrwg.c:2234:7: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_ReuseFont': ncbidrwg.c:2252:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_GetFontSpec': ncbidrwg.c:2860:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c:2867:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_AssignPrinterFont': ncbidrwg.c:2928:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_GIFRgnToRect': ncbidrwg.c:4098:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_RectToGIFRgn': ncbidrwg.c:4109:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_ClearRgn': ncbidrwg.c:6081:16: warning: variable 'ntool' set but not used [-Wunused-but-set-variable] ncbidrwg.c: In function 'Nlm_DiffRgn': ncbidrwg.c:6273:16: warning: variable 'ntool3' set but not used [-Wunused-but-set-variable] ncbidrwg.c:6272:16: warning: variable 'ntool2' set but not used [-Wunused-but-set-variable] ncbidrwg.c:6271:16: warning: variable 'ntool1' set but not used [-Wunused-but-set-variable] ncbidrwg.c: In function 'Nlm_XorRgn': ncbidrwg.c:6324:16: warning: variable 'ntool3' set but not used [-Wunused-but-set-variable] ncbidrwg.c:6323:16: warning: variable 'ntool2' set but not used [-Wunused-but-set-variable] ncbidrwg.c:6322:16: warning: variable 'ntool1' set but not used [-Wunused-but-set-variable] ncbidrwg.c: In function 'Nlm_EqualRgn': ncbidrwg.c:6353:16: warning: variable 'ntool2' set but not used [-Wunused-but-set-variable] ncbidrwg.c:6352:16: warning: variable 'ntool1' set but not used [-Wunused-but-set-variable] ncbidrwg.c: In function 'Nlm_EmptyRgn': ncbidrwg.c:6381:17: warning: variable 'ntool' set but not used [-Wunused-but-set-variable] ncbidrwg.c: In function 'Nlm_CopyPixmap': ncbidrwg.c:7040:25: warning: variable 'height' set but not used [-Wunused-but-set-variable] ncbidrwg.c:7039:25: warning: variable 'width' set but not used [-Wunused-but-set-variable] ncbidrwg.c: In function 'Nlm_GetColorRGB': ncbidrwg.c:1373:3: warning: 'i' may be used uninitialized in this function [-Wuninitialized] rm -f libvibgif.a ar cru libvibgif.a gdfontg.o gdfontmb.o gdfontt.o pictogif.o gdfontl.o gdfonts.o ncbidrwg.o drawing.o mapping.o picture.o ncbimain.o cp -p libvibgif.a ../lib ranlib ../lib/libvibgif.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF algorend.c algorend.c: In function 'ColorFromSS': algorend.c:893:10: warning: unused variable 'rsult' [-Wunused-variable] algorend.c: In function 'Cn3D_RenWire': algorend.c:1400:10: warning: unused variable 'pmldThis' [-Wunused-variable] algorend.c:1399:11: warning: unused variable 'pdnmlThis' [-Wunused-variable] algorend.c:1398:10: warning: unused variable 'pmsdThis' [-Wunused-variable] algorend.c: In function 'Cn3D_ColSeqCons': algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] algorend.c: In function 'RenderObject': algorend.c:3135:25: warning: variable 'fZTo' set but not used [-Wunused-but-set-variable] algorend.c:3135:19: warning: variable 'fYTo' set but not used [-Wunused-but-set-variable] algorend.c:3135:13: warning: variable 'fXTo' set but not used [-Wunused-but-set-variable] algorend.c:3134:29: warning: variable 'fZFrom' set but not used [-Wunused-but-set-variable] algorend.c:3134:21: warning: variable 'fYFrom' set but not used [-Wunused-but-set-variable] algorend.c:3134:13: warning: variable 'fXFrom' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderLabel': algorend.c:3393:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderBond': algorend.c:3554:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderHalfWormBond': algorend.c:3673:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable] algorend.c:3671:24: warning: variable 'pmad2' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderAnAtom': algorend.c:3758:10: warning: unused variable 'pmadFrom' [-Wunused-variable] algorend.c:3757:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderAllAtom': algorend.c:3829:9: warning: variable 'iMenu' set but not used [-Wunused-but-set-variable] algorend.c:3815:11: warning: unused variable 'pvnmbThis' [-Wunused-variable] algorend.c:3811:11: warning: unused variable 'pvnmaThis' [-Wunused-variable] algorend.c: In function 'RenderGraph': algorend.c:4498:10: warning: unused variable 'bReservedThis' [-Wunused-variable] algorend.c: In function 'LabelChainTermini': algorend.c:4772:14: warning: unused variable 'pmbdThis' [-Wunused-variable] algorend.c:4771:15: warning: unused variable 'pvnmbThis' [-Wunused-variable] algorend.c: In function 'RenderMolecule': algorend.c:4871:11: warning: variable 'pdnmmThis' set but not used [-Wunused-but-set-variable] algorend.c: In function 'fnARLoop': algorend.c:5556:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] algorend.c: In function 'AlgorithmicRendering': algorend.c:5684:10: warning: unused variable 'i' [-Wunused-variable] algorend.c:5683:10: warning: unused variable 'Cn3d_LayerNow_sofar' [-Wunused-variable] algorend.c: In function 'Do3DOrigin': algorend.c:5756:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] algorend.c:5751:13: warning: variable 'fTo' set but not used [-Wunused-but-set-variable] algorend.c:5750:13: warning: variable 'fFrom' set but not used [-Wunused-but-set-variable] algorend.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] algorend.c:717:16: warning: 'Cn3d_CopyToNode' defined but not used [-Wunused-variable] algorend.c:2265:13: warning: 'LabelGroupOnOffProc' defined but not used [-Wunused-function] algorend.c: In function 'RenderLabel': algorend.c:3493:14: warning: 'iX' may be used uninitialized in this function [-Wuninitialized] algorend.c:3493:14: warning: 'iY' may be used uninitialized in this function [-Wuninitialized] algorend.c:3493:14: warning: 'iZ' may be used uninitialized in this function [-Wuninitialized] algorend.c:3448:15: warning: 'fZCen' may be used uninitialized in this function [-Wuninitialized] algorend.c:3447:15: warning: 'fYCen' may be used uninitialized in this function [-Wuninitialized] algorend.c:3446:15: warning: 'fXCen' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:41: warning: 'fZTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:77: warning: 'fYTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3450:41: warning: 'fXTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:58: warning: 'fZFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:22: warning: 'fYFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3450:58: warning: 'fXFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c: In function 'MasterChangeRenderProc.isra.9': algorend.c:1316:33: warning: 'k' may be used uninitialized in this function [-Wuninitialized] algorend.c: In function 'RenderObject': algorend.c:3260:22: warning: 'iXFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3260:22: warning: 'iYFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3260:22: warning: 'iZFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3260:22: warning: 'iXTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3260:22: warning: 'iYTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3260:22: warning: 'iZTo' may be used uninitialized in this function [-Wuninitialized] algorend.c: In function 'Do3DOrigin': algorend.c:5792:18: warning: 'iXFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:5792:18: warning: 'iYFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:5792:18: warning: 'iZFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:5792:18: warning: 'iXTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:5792:18: warning: 'iYTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:5792:18: warning: 'iZTo' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF cn3dmsel.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF cn3dopen.c cn3dopen.c: In function 'Cn3D_OpenStart': cn3dopen.c:722:10: warning: unused variable 'iBioseq' [-Wunused-variable] cn3dopen.c: In function 'MMDB_ReadMime': cn3dopen.c:1000:19: warning: unused variable 'pdnmlThis' [-Wunused-variable] cn3dopen.c:989:25: warning: unused variable 'pbsasThis' [-Wunused-variable] cn3dopen.c: In function 'Cn3D_NetOpenBiostruc': cn3dopen.c:1310:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dopen.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dopen.c:430:15: warning: 'Cn3D_wOpen' defined but not used [-Wunused-variable] cn3dopen.c:431:15: warning: 'Cn3D_bOpenBrowse' defined but not used [-Wunused-variable] cn3dopen.c: In function 'MMDB_ReadMime': cn3dopen.c:528:28: warning: 'salp' may be used uninitialized in this function [-Wuninitialized] cn3dopen.c:513:15: note: 'salp' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF cn3dsave.c cn3dsave.c: In function 'Cn3D_ExportAsnNow': cn3dsave.c:375:11: warning: unused variable 'pdnmlThis' [-Wunused-variable] cn3dsave.c:372:24: warning: variable 'pbsfThis' set but not used [-Wunused-but-set-variable] cn3dsave.c:366:10: warning: unused variable 'pmsdSlave' [-Wunused-variable] cn3dsave.c:362:27: warning: variable 'FirstSlave' set but not used [-Wunused-but-set-variable] cn3dsave.c:357:13: warning: unused variable 'pcSave' [-Wunused-variable] cn3dsave.c: In function 'Cn3D_SaveBiostruc': cn3dsave.c:524:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dsave.c:523:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable] cn3dsave.c:518:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dsave.c: In function 'Cn3D_ExportDictNow': cn3dsave.c:598:13: warning: unused variable 'pcSave' [-Wunused-variable] cn3dsave.c:596:10: warning: unused variable 'iCount' [-Wunused-variable] cn3dsave.c: In function 'Cn3D_SaveDictionary': cn3dsave.c:629:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dsave.c:624:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dsave.c: In function 'Cn3D_SaveSub': cn3dsave.c:688:10: warning: variable 'i' set but not used [-Wunused-but-set-variable] cn3dsave.c: At top level: ../include/asnmime.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnmime.h:117:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnmime.h:118:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnmime.h:119:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dsave.c:184:15: warning: 'Cn3D_bFeatOn' defined but not used [-Wunused-variable] cn3dsave.c: In function 'Cn3D_GetSubSet.isra.4': cn3dsave.c:296:20: warning: 'isep' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF cn3dxprt.c cn3dxprt.c: In function 'Cn3D_ExportPDB': cn3dxprt.c:209:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dxprt.c:208:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable] cn3dxprt.c:203:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dxprt.c: In function 'Cn3D_ExportKin': cn3dxprt.c:381:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dxprt.c:380:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable] cn3dxprt.c:375:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dxprt.c: In function 'Cn3D_ExportSub': cn3dxprt.c:513:10: warning: variable 'i' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF cn3dwin.c cn3dwin.c:734:3: warning: missing braces around initializer [-Wmissing-braces] cn3dwin.c:734:3: warning: (near initialization for 'Cn3d_PaletteRGB[0]') [-Wmissing-braces] cn3dwin.c: In function 'Viewer3DGroups': cn3dwin.c:1728:10: warning: unused variable 'groups' [-Wunused-variable] cn3dwin.c: In function 'Viewer3DViewer': cn3dwin.c:1784:10: warning: unused variable 'groups' [-Wunused-variable] cn3dwin.c: In function 'Cn3D_AlignEdit': cn3dwin.c:1936:10: warning: unused variable 'iCount' [-Wunused-variable] cn3dwin.c:1935:10: warning: variable 'pmmdThis' set but not used [-Wunused-but-set-variable] cn3dwin.c:1933:17: warning: unused variable 'salp' [-Wunused-variable] cn3dwin.c:1931:29: warning: variable 'pmsdSlave' set but not used [-Wunused-but-set-variable] cn3dwin.c:1930:11: warning: unused variable 'pdnmsSlave' [-Wunused-variable] cn3dwin.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dwin.c:682:13: warning: 'Cn3D_iLabelCtrl' defined but not used [-Wunused-variable] cn3dwin.c:688:13: warning: 'Cn3D_iModelCtrl' defined but not used [-Wunused-variable] cn3dwin.c:922:13: warning: 'Cn3D_ZoomCB' defined but not used [-Wunused-function] cn3dwin.c:929:13: warning: 'Cn3D_MoveCB' defined but not used [-Wunused-function] cn3dwin.c:1428:13: warning: 'HLatom_MA' defined but not used [-Wunused-function] cn3dwin.c:1626:13: warning: 'HLmolecule_MA' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF cn3dentr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF cn3dmsg.c cn3dmsg.c: In function 'SeqStrucMediaMsgFunc': cn3dmsg.c:593:19: warning: variable 'omudp' set but not used [-Wunused-but-set-variable] cn3dmsg.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF cn3dmatn.c cn3dmatn.c: In function 'FindMM': cn3dmatn.c:217:29: warning: unused variable 'pdnmsThisSlave' [-Wunused-variable] cn3dmatn.c: In function 'DoMediaHL': cn3dmatn.c:249:10: warning: variable 'MainAtom' set but not used [-Wunused-but-set-variable] cn3dmatn.c:247:10: warning: unused variable 'paldThis' [-Wunused-variable] cn3dmatn.c:246:11: warning: unused variable 'pvnalThis' [-Wunused-variable] cn3dmatn.c:245:10: warning: unused variable 'pmadThis' [-Wunused-variable] cn3dmatn.c:244:11: warning: unused variable 'pvnmaThis' [-Wunused-variable] cn3dmatn.c: In function 'Cn3DCheckAndDoHighlight': cn3dmatn.c:372:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dmatn.c:371:10: warning: unused variable 'pmmdThis' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF cn3dmodl.c cn3dmodl.c: In function 'Cn3DCheckNoSingleHighlight': cn3dmodl.c:353:11: warning: unused variable 'pdnmgThis' [-Wunused-variable] cn3dmodl.c: In function 'Cn3DCheckHighlighted': cn3dmodl.c:364:29: warning: unused variable 'pmsdSlave' [-Wunused-variable] cn3dmodl.c: In function 'Cn3D_ReSetVisibleStatus': cn3dmodl.c:508:10: warning: unused variable 'pmgd' [-Wunused-variable] cn3dmodl.c:507:11: warning: unused variable 'pdnmg' [-Wunused-variable] cn3dmodl.c:506:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dmodl.c: In function 'fnAlignList': cn3dmodl.c:996:25: warning: unused variable 'itemtype' [-Wunused-variable] cn3dmodl.c:996:11: warning: unused variable 'entityID' [-Wunused-variable] cn3dmodl.c:995:14: warning: unused variable 'sipThis' [-Wunused-variable] cn3dmodl.c:993:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dmodl.c: In function 'SynchronizeModVisibleStatus': cn3dmodl.c:1065:11: warning: unused variable 'pdnmg' [-Wunused-variable] cn3dmodl.c:1064:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dmodl.c: In function 'SetResidueVisibilities': cn3dmodl.c:1201:11: warning: unused variable 'pvnmoThis' [-Wunused-variable] cn3dmodl.c: At top level: ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF cn3dshim.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF cn3dmesh.c cn3dmesh.c: In function 'Cn3D_MeshAcceptProc': cn3dmesh.c:103:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dmesh.c: In function 'Cn3D_OpenMesh': cn3dmesh.c:151:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dmesh.c: In function 'Cn3D_MeshAcceptProc': cn3dmesh.c:111:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cn3dmesh.c:119:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cn3dmesh.c:129:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cn3dmesh.c:133:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF cn3dstyl.c cn3dstyl.c: In function 'GetThisSpecialAlgorRenderSet': cn3dstyl.c:459:27: warning: unused variable 'sfipThis' [-Wunused-variable] cn3dstyl.c: In function 'GetSpecialAlgorRenderSet': cn3dstyl.c:641:10: warning: unused variable 'parsThis' [-Wunused-variable] cn3dstyl.c:640:23: warning: unused variable 'sfpThis' [-Wunused-variable] cn3dstyl.c: In function 'ChangeSpecialLabelsProc': cn3dstyl.c:866:44: warning: unused variable 'PDBOn' [-Wunused-variable] cn3dstyl.c: In function 'lFeatureEditedAction': cn3dstyl.c:1136:10: warning: unused variable 'val' [-Wunused-variable] cn3dstyl.c: In function 'bFeatureMoveAction': cn3dstyl.c:1153:23: warning: unused variable 'sfpThis' [-Wunused-variable] cn3dstyl.c: In function 'bFeatureEditAction': cn3dstyl.c:1176:23: warning: unused variable 'sfpThis' [-Wunused-variable] cn3dstyl.c: In function 'ModelControls': cn3dstyl.c:1364:19: warning: variable 'ppt13' set but not used [-Wunused-but-set-variable] cn3dstyl.c:1362:36: warning: variable 'ppt5' set but not used [-Wunused-but-set-variable] cn3dstyl.c:1362:12: warning: variable 'ppt1' set but not used [-Wunused-but-set-variable] cn3dstyl.c: In function 'GetBiostrucFeatureLocationForHihglightedResidues': cn3dstyl.c:1728:30: warning: variable 'SingleInterval' set but not used [-Wunused-but-set-variable] cn3dstyl.c:1725:20: warning: variable 'iMolCurrent' set but not used [-Wunused-but-set-variable] cn3dstyl.c: In function 'MakeBiostrucFeatureSetForUserDefinedFeature': cn3dstyl.c:2122:60: warning: unused variable 'bsfsp_tail' [-Wunused-variable] cn3dstyl.c:2122:41: warning: unused variable 'bsfsp_head' [-Wunused-variable] cn3dstyl.c: In function 'GetUserDefinedFeature': cn3dstyl.c:2196:27: warning: unused variable 'sfipThis' [-Wunused-variable] cn3dstyl.c: In function 'Cn3DIndexUserDefinedFeature': cn3dstyl.c:2551:23: warning: variable 'sfpThis' set but not used [-Wunused-but-set-variable] cn3dstyl.c:2549:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dstyl.c:2548:11: warning: unused variable 'pdnmmHead' [-Wunused-variable] cn3dstyl.c:2547:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dstyl.c: At top level: ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dstyl.c:144:14: warning: 'Cn3D_pupModelStyleItem' defined but not used [-Wunused-variable] cn3dstyl.c:149:15: warning: 'bResetFeatureTitle' defined but not used [-Wunused-variable] cn3dstyl.c:456:30: warning: 'GetThisSpecialAlgorRenderSet' defined but not used [-Wunused-function] cn3dstyl.c: In function 'CopyLocation': cn3dstyl.c:496:27: warning: 'rsipNewHead' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF seqcons.c ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] seqcons.c: In function 'CSC_Algorithm_ByBlosum62': seqcons.c:402:43: warning: 'minScore' may be used uninitialized in this function [-Wuninitialized] seqcons.c:402:67: warning: 'maxScore' may be used uninitialized in this function [-Wuninitialized] rm -f libncbicn3d.a ar cru libncbicn3d.a algorend.o cn3dmsel.o cn3dopen.o cn3dsave.o cn3dxprt.o cn3dwin.o cn3dentr.o cn3dmsg.o cn3dmatn.o cn3dmodl.o cn3dshim.o cn3dmesh.o cn3dstyl.o seqcons.o cp -p libncbicn3d.a ../lib ranlib ../lib/libncbicn3d.a mv algorend.o algorend.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL algorend.c algorend.c: In function 'Cn3D_SetOGLFont': algorend.c:791:24: warning: unused variable 'currentUnderlined' [-Wunused-variable] algorend.c:790:45: warning: unused variable 'currentItalic' [-Wunused-variable] algorend.c:790:24: warning: unused variable 'currentBold' [-Wunused-variable] algorend.c:789:40: warning: unused variable 'currentSize' [-Wunused-variable] algorend.c:789:21: warning: unused variable 'currentIndex' [-Wunused-variable] algorend.c: In function 'ColorFromSS': algorend.c:893:10: warning: unused variable 'rsult' [-Wunused-variable] algorend.c: In function 'Cn3D_RenWire': algorend.c:1400:10: warning: unused variable 'pmldThis' [-Wunused-variable] algorend.c:1399:11: warning: unused variable 'pdnmlThis' [-Wunused-variable] algorend.c:1398:10: warning: unused variable 'pmsdThis' [-Wunused-variable] algorend.c: In function 'Cn3D_ColSeqCons': algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] algorend.c: In function 'MasterChangeLabelsProc': algorend.c:2075:44: warning: unused variable 'TopOn' [-Wunused-variable] algorend.c:2073:13: warning: unused variable 'k' [-Wunused-variable] algorend.c: In function 'ResetLabelCtrls': algorend.c:2272:25: warning: variable 'size' set but not used [-Wunused-but-set-variable] algorend.c: In function 'LabelControls': algorend.c:2434:19: warning: variable 'ppt11' set but not used [-Wunused-but-set-variable] algorend.c:2431:36: warning: unused variable 'ppt7' [-Wunused-variable] algorend.c: In function 'Cn3D_SetQualityFromAppParams': algorend.c:2649:9: warning: unused variable 'i' [-Wunused-variable] algorend.c: In function 'OGL_Quality': algorend.c:2769:23: warning: unused variable 'q' [-Wunused-variable] algorend.c:2769:20: warning: variable 'p' set but not used [-Wunused-but-set-variable] algorend.c:2769:16: warning: variable 'bp' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderControls': algorend.c:2893:12: warning: variable 'ppt5' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderObject': algorend.c:3138:10: warning: unused variable 'iCylRadius' [-Wunused-variable] algorend.c:3137:22: warning: unused variable 'iZTo' [-Wunused-variable] algorend.c:3137:16: warning: unused variable 'iYTo' [-Wunused-variable] algorend.c:3137:10: warning: unused variable 'iXTo' [-Wunused-variable] algorend.c:3136:26: warning: unused variable 'iZFrom' [-Wunused-variable] algorend.c:3136:18: warning: unused variable 'iYFrom' [-Wunused-variable] algorend.c:3136:10: warning: unused variable 'iXFrom' [-Wunused-variable] algorend.c:3133:10: warning: unused variable 'i' [-Wunused-variable] algorend.c: In function 'RenderLabel': algorend.c:3394:10: warning: variable 'paldPrim' set but not used [-Wunused-but-set-variable] algorend.c:3393:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] algorend.c:3389:18: warning: unused variable 'iZ' [-Wunused-variable] algorend.c:3389:14: warning: unused variable 'iY' [-Wunused-variable] algorend.c:3389:10: warning: unused variable 'iX' [-Wunused-variable] algorend.c: In function 'RenderBond': algorend.c:3554:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderHalfWormBond': algorend.c:3673:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable] algorend.c:3671:24: warning: variable 'pmad2' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderAnAtom': algorend.c:3758:10: warning: unused variable 'pmadFrom' [-Wunused-variable] algorend.c: In function 'RenderAllAtom': algorend.c:3829:9: warning: variable 'iMenu' set but not used [-Wunused-but-set-variable] algorend.c:3815:11: warning: unused variable 'pvnmbThis' [-Wunused-variable] algorend.c:3811:11: warning: unused variable 'pvnmaThis' [-Wunused-variable] algorend.c: In function 'RenderGraph': algorend.c:4498:10: warning: unused variable 'bReservedThis' [-Wunused-variable] algorend.c: In function 'LabelChainTermini': algorend.c:4772:14: warning: unused variable 'pmbdThis' [-Wunused-variable] algorend.c:4771:15: warning: unused variable 'pvnmbThis' [-Wunused-variable] algorend.c: In function 'RenderMolecule': algorend.c:4871:11: warning: variable 'pdnmmThis' set but not used [-Wunused-but-set-variable] algorend.c: In function 'fnARLoop': algorend.c:5556:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] algorend.c: In function 'AlgorithmicRendering': algorend.c:5684:10: warning: unused variable 'i' [-Wunused-variable] algorend.c:5683:10: warning: unused variable 'Cn3d_LayerNow_sofar' [-Wunused-variable] algorend.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] algorend.c:717:16: warning: 'Cn3d_CopyToNode' defined but not used [-Wunused-variable] algorend.c:2265:13: warning: 'LabelGroupOnOffProc' defined but not used [-Wunused-function] algorend.c: In function 'RenderLabel': algorend.c:3448:15: warning: 'fZCen' may be used uninitialized in this function [-Wuninitialized] algorend.c:3447:15: warning: 'fYCen' may be used uninitialized in this function [-Wuninitialized] algorend.c:3446:15: warning: 'fXCen' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:41: warning: 'fZTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:77: warning: 'fYTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3450:41: warning: 'fXTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:58: warning: 'fZFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:22: warning: 'fYFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3450:58: warning: 'fXFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c: In function 'MasterChangeRenderProc': algorend.c:1316:33: warning: 'k' may be used uninitialized in this function [-Wuninitialized] mv algorend.o algorend.glo mv algorend.tmp algorend.o mv cn3dmsel.o cn3dmsel.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL cn3dmsel.c mv cn3dmsel.o cn3dmsel.glo mv cn3dmsel.tmp cn3dmsel.o mv cn3dopen.o cn3dopen.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL cn3dopen.c cn3dopen.c: In function 'Cn3D_OpenStart': cn3dopen.c:722:10: warning: unused variable 'iBioseq' [-Wunused-variable] cn3dopen.c: In function 'MMDB_ReadMime': cn3dopen.c:1000:19: warning: unused variable 'pdnmlThis' [-Wunused-variable] cn3dopen.c:989:25: warning: unused variable 'pbsasThis' [-Wunused-variable] cn3dopen.c: In function 'Cn3D_NetOpenBiostruc': cn3dopen.c:1310:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dopen.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dopen.c:430:15: warning: 'Cn3D_wOpen' defined but not used [-Wunused-variable] cn3dopen.c:431:15: warning: 'Cn3D_bOpenBrowse' defined but not used [-Wunused-variable] cn3dopen.c: In function 'MMDB_ReadMime': cn3dopen.c:528:28: warning: 'salp' may be used uninitialized in this function [-Wuninitialized] cn3dopen.c:513:15: note: 'salp' was declared here mv cn3dopen.o cn3dopen.glo mv cn3dopen.tmp cn3dopen.o mv cn3dsave.o cn3dsave.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL cn3dsave.c cn3dsave.c: In function 'Cn3D_AddMatrix': cn3dsave.c:206:41: warning: unused variable 'bsfsp_new' [-Wunused-variable] cn3dsave.c: In function 'Cn3D_ExportAsnNow': cn3dsave.c:375:11: warning: unused variable 'pdnmlThis' [-Wunused-variable] cn3dsave.c:372:24: warning: variable 'pbsfThis' set but not used [-Wunused-but-set-variable] cn3dsave.c:366:10: warning: unused variable 'pmsdSlave' [-Wunused-variable] cn3dsave.c:362:27: warning: variable 'FirstSlave' set but not used [-Wunused-but-set-variable] cn3dsave.c:357:13: warning: unused variable 'pcSave' [-Wunused-variable] cn3dsave.c: In function 'Cn3D_SaveBiostruc': cn3dsave.c:524:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dsave.c:523:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable] cn3dsave.c:518:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dsave.c: In function 'Cn3D_ExportDictNow': cn3dsave.c:598:13: warning: unused variable 'pcSave' [-Wunused-variable] cn3dsave.c:596:10: warning: unused variable 'iCount' [-Wunused-variable] cn3dsave.c: In function 'Cn3D_SaveDictionary': cn3dsave.c:629:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dsave.c:624:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dsave.c: In function 'Cn3D_SaveSub': cn3dsave.c:688:10: warning: variable 'i' set but not used [-Wunused-but-set-variable] cn3dsave.c: At top level: ../include/asnmime.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnmime.h:117:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnmime.h:118:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnmime.h:119:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dsave.c:184:15: warning: 'Cn3D_bFeatOn' defined but not used [-Wunused-variable] cn3dsave.c: In function 'Cn3D_GetSubSet.isra.4': cn3dsave.c:296:20: warning: 'isep' may be used uninitialized in this function [-Wuninitialized] mv cn3dsave.o cn3dsave.glo mv cn3dsave.tmp cn3dsave.o mv cn3dxprt.o cn3dxprt.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL cn3dxprt.c cn3dxprt.c: In function 'Cn3D_ExportPDB': cn3dxprt.c:209:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dxprt.c:208:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable] cn3dxprt.c:203:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dxprt.c: In function 'Cn3D_ExportKin': cn3dxprt.c:381:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dxprt.c:380:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable] cn3dxprt.c:375:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dxprt.c: In function 'Cn3D_ExportSub': cn3dxprt.c:513:10: warning: variable 'i' set but not used [-Wunused-but-set-variable] mv cn3dxprt.o cn3dxprt.glo mv cn3dxprt.tmp cn3dxprt.o mv cn3dwin.o cn3dwin.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL cn3dwin.c cn3dwin.c:734:3: warning: missing braces around initializer [-Wmissing-braces] cn3dwin.c:734:3: warning: (near initialization for 'Cn3d_PaletteRGB[0]') [-Wmissing-braces] cn3dwin.c: In function 'Cn3D_Default_HLColor': cn3dwin.c:982:27: warning: variable 'colorB' set but not used [-Wunused-but-set-variable] cn3dwin.c:982:19: warning: variable 'colorG' set but not used [-Wunused-but-set-variable] cn3dwin.c:982:11: warning: variable 'colorR' set but not used [-Wunused-but-set-variable] cn3dwin.c: In function 'Cn3D_RedrawEx': cn3dwin.c:1251:19: warning: unused variable 'iColor' [-Wunused-variable] cn3dwin.c: In function 'fnPreCHLresidue': cn3dwin.c:1543:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dwin.c: In function 'Viewer3DGroups': cn3dwin.c:1728:10: warning: unused variable 'groups' [-Wunused-variable] cn3dwin.c: In function 'Cn3D_AlignEdit': cn3dwin.c:1936:10: warning: unused variable 'iCount' [-Wunused-variable] cn3dwin.c:1935:10: warning: variable 'pmmdThis' set but not used [-Wunused-but-set-variable] cn3dwin.c:1933:17: warning: unused variable 'salp' [-Wunused-variable] cn3dwin.c:1931:29: warning: variable 'pmsdSlave' set but not used [-Wunused-but-set-variable] cn3dwin.c:1930:11: warning: unused variable 'pdnmsSlave' [-Wunused-variable] cn3dwin.c: In function 'Cn3DWin': cn3dwin.c:2364:5: warning: implicit declaration of function 'Nlm_SetOGLContext' [-Wimplicit-function-declaration] cn3dwin.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dwin.c:676:14: warning: 'Cn3D_Vy' defined but not used [-Wunused-variable] cn3dwin.c:682:13: warning: 'Cn3D_iLabelCtrl' defined but not used [-Wunused-variable] cn3dwin.c:688:13: warning: 'Cn3D_iModelCtrl' defined but not used [-Wunused-variable] cn3dwin.c:713:14: warning: 'Cn3D_gViewer' defined but not used [-Wunused-variable] cn3dwin.c:719:14: warning: 'Cn3D_gViewCtrl' defined but not used [-Wunused-variable] cn3dwin.c:922:13: warning: 'Cn3D_ZoomCB' defined but not used [-Wunused-function] cn3dwin.c:929:13: warning: 'Cn3D_MoveCB' defined but not used [-Wunused-function] cn3dwin.c:936:13: warning: 'Cn3D_Default_BgColor' defined but not used [-Wunused-function] cn3dwin.c:953:13: warning: 'Cn3D_BgColor' defined but not used [-Wunused-function] cn3dwin.c:979:13: warning: 'Cn3D_Default_HLColor' defined but not used [-Wunused-function] cn3dwin.c:1349:25: warning: 'DoHighlightSeg' defined but not used [-Wunused-function] cn3dwin.c:1428:13: warning: 'HLatom_MA' defined but not used [-Wunused-function] cn3dwin.c:1626:13: warning: 'HLmolecule_MA' defined but not used [-Wunused-function] mv cn3dwin.o cn3dwin.glo mv cn3dwin.tmp cn3dwin.o mv cn3dentr.o cn3dentr.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL cn3dentr.c mv cn3dentr.o cn3dentr.glo mv cn3dentr.tmp cn3dentr.o mv cn3dmsg.o cn3dmsg.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL cn3dmsg.c cn3dmsg.c: In function 'SeqStrucMediaMsgFunc': cn3dmsg.c:593:19: warning: variable 'omudp' set but not used [-Wunused-but-set-variable] cn3dmsg.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] mv cn3dmsg.o cn3dmsg.glo mv cn3dmsg.tmp cn3dmsg.o mv cn3dmatn.o cn3dmatn.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL cn3dmatn.c cn3dmatn.c: In function 'FindMM': cn3dmatn.c:217:29: warning: unused variable 'pdnmsThisSlave' [-Wunused-variable] cn3dmatn.c: In function 'DoMediaHL': cn3dmatn.c:249:10: warning: variable 'MainAtom' set but not used [-Wunused-but-set-variable] cn3dmatn.c:247:10: warning: unused variable 'paldThis' [-Wunused-variable] cn3dmatn.c:246:11: warning: unused variable 'pvnalThis' [-Wunused-variable] cn3dmatn.c:245:10: warning: unused variable 'pmadThis' [-Wunused-variable] cn3dmatn.c:244:11: warning: unused variable 'pvnmaThis' [-Wunused-variable] cn3dmatn.c: In function 'Cn3DCheckAndDoHighlight': cn3dmatn.c:372:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dmatn.c:371:10: warning: unused variable 'pmmdThis' [-Wunused-variable] mv cn3dmatn.o cn3dmatn.glo mv cn3dmatn.tmp cn3dmatn.o mv cn3dmodl.o cn3dmodl.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL cn3dmodl.c cn3dmodl.c: In function 'Cn3DCheckNoSingleHighlight': cn3dmodl.c:353:11: warning: unused variable 'pdnmgThis' [-Wunused-variable] cn3dmodl.c: In function 'Cn3DCheckHighlighted': cn3dmodl.c:364:29: warning: unused variable 'pmsdSlave' [-Wunused-variable] cn3dmodl.c: In function 'Cn3D_ReSetVisibleStatus': cn3dmodl.c:508:10: warning: unused variable 'pmgd' [-Wunused-variable] cn3dmodl.c:507:11: warning: unused variable 'pdnmg' [-Wunused-variable] cn3dmodl.c:506:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dmodl.c: In function 'fnAlignList': cn3dmodl.c:996:25: warning: unused variable 'itemtype' [-Wunused-variable] cn3dmodl.c:996:11: warning: unused variable 'entityID' [-Wunused-variable] cn3dmodl.c:995:14: warning: unused variable 'sipThis' [-Wunused-variable] cn3dmodl.c:993:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dmodl.c: In function 'SynchronizeModVisibleStatus': cn3dmodl.c:1065:11: warning: unused variable 'pdnmg' [-Wunused-variable] cn3dmodl.c:1064:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dmodl.c: In function 'SetResidueVisibilities': cn3dmodl.c:1201:11: warning: unused variable 'pvnmoThis' [-Wunused-variable] cn3dmodl.c: At top level: ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] mv cn3dmodl.o cn3dmodl.glo mv cn3dmodl.tmp cn3dmodl.o mv cn3dshim.o cn3dshim.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL cn3dshim.c cn3dshim.c: In function 'Cn3D_Size': cn3dshim.c:413:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dshim.c:412:11: warning: unused variable 'pdnmsSlave' [-Wunused-variable] mv cn3dshim.o cn3dshim.glo mv cn3dshim.tmp cn3dshim.o mv cn3dmesh.o cn3dmesh.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL cn3dmesh.c cn3dmesh.c: In function 'Cn3D_MeshAcceptProc': cn3dmesh.c:103:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dmesh.c: In function 'Cn3D_OpenMesh': cn3dmesh.c:151:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dmesh.c: In function 'Cn3D_MeshAcceptProc': cn3dmesh.c:111:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cn3dmesh.c:119:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cn3dmesh.c:129:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cn3dmesh.c:133:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] mv cn3dmesh.o cn3dmesh.glo mv cn3dmesh.tmp cn3dmesh.o mv cn3dstyl.o cn3dstyl.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL cn3dstyl.c cn3dstyl.c: In function 'GetThisSpecialAlgorRenderSet': cn3dstyl.c:459:27: warning: unused variable 'sfipThis' [-Wunused-variable] cn3dstyl.c: In function 'GetSpecialAlgorRenderSet': cn3dstyl.c:641:10: warning: unused variable 'parsThis' [-Wunused-variable] cn3dstyl.c:640:23: warning: unused variable 'sfpThis' [-Wunused-variable] cn3dstyl.c: In function 'ChangeSpecialLabelsProc': cn3dstyl.c:867:16: warning: unused variable 'TopOn' [-Wunused-variable] cn3dstyl.c:866:44: warning: unused variable 'PDBOn' [-Wunused-variable] cn3dstyl.c:864:17: warning: unused variable 'k' [-Wunused-variable] cn3dstyl.c: In function 'ModelSetLabelCtrls': cn3dstyl.c:1059:37: warning: variable 'size' set but not used [-Wunused-but-set-variable] cn3dstyl.c: In function 'lFeatureEditedAction': cn3dstyl.c:1136:10: warning: unused variable 'val' [-Wunused-variable] cn3dstyl.c: In function 'bFeatureMoveAction': cn3dstyl.c:1153:23: warning: unused variable 'sfpThis' [-Wunused-variable] cn3dstyl.c: In function 'bFeatureEditAction': cn3dstyl.c:1176:23: warning: unused variable 'sfpThis' [-Wunused-variable] cn3dstyl.c: In function 'ModelControls': cn3dstyl.c:1364:19: warning: variable 'ppt13' set but not used [-Wunused-but-set-variable] cn3dstyl.c:1363:9: warning: unused variable 'ppt11' [-Wunused-variable] cn3dstyl.c:1362:60: warning: unused variable 'ppt9' [-Wunused-variable] cn3dstyl.c:1362:36: warning: variable 'ppt5' set but not used [-Wunused-but-set-variable] cn3dstyl.c:1362:12: warning: variable 'ppt1' set but not used [-Wunused-but-set-variable] cn3dstyl.c: In function 'GetBiostrucFeatureLocationForHihglightedResidues': cn3dstyl.c:1728:30: warning: variable 'SingleInterval' set but not used [-Wunused-but-set-variable] cn3dstyl.c:1725:20: warning: variable 'iMolCurrent' set but not used [-Wunused-but-set-variable] cn3dstyl.c: In function 'MakeBiostrucFeatureSetForUserDefinedFeature': cn3dstyl.c:2122:60: warning: unused variable 'bsfsp_tail' [-Wunused-variable] cn3dstyl.c:2122:41: warning: unused variable 'bsfsp_head' [-Wunused-variable] cn3dstyl.c: In function 'GetUserDefinedFeature': cn3dstyl.c:2196:27: warning: unused variable 'sfipThis' [-Wunused-variable] cn3dstyl.c: In function 'Cn3DIndexUserDefinedFeature': cn3dstyl.c:2551:23: warning: variable 'sfpThis' set but not used [-Wunused-but-set-variable] cn3dstyl.c:2549:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dstyl.c:2548:11: warning: unused variable 'pdnmmHead' [-Wunused-variable] cn3dstyl.c:2547:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dstyl.c: At top level: ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dstyl.c:144:14: warning: 'Cn3D_pupModelStyleItem' defined but not used [-Wunused-variable] cn3dstyl.c:149:15: warning: 'bResetFeatureTitle' defined but not used [-Wunused-variable] cn3dstyl.c:456:30: warning: 'GetThisSpecialAlgorRenderSet' defined but not used [-Wunused-function] cn3dstyl.c: In function 'CopyLocation': cn3dstyl.c:496:27: warning: 'rsipNewHead' may be used uninitialized in this function [-Wuninitialized] mv cn3dstyl.o cn3dstyl.glo mv cn3dstyl.tmp cn3dstyl.o mv seqcons.o seqcons.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF -D_OPENGL seqcons.c ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] seqcons.c: In function 'CSC_Algorithm_ByBlosum62': seqcons.c:402:43: warning: 'minScore' may be used uninitialized in this function [-Wuninitialized] seqcons.c:402:67: warning: 'maxScore' may be used uninitialized in this function [-Wuninitialized] mv seqcons.o seqcons.glo mv seqcons.tmp seqcons.o rm -f libncbicn3dOGL.a ar cru libncbicn3dOGL.a algorend.glo cn3dmsel.glo cn3dopen.glo cn3dsave.glo cn3dxprt.glo cn3dwin.glo cn3dentr.glo cn3dmsg.glo cn3dmatn.glo cn3dmodl.glo cn3dshim.glo cn3dmesh.glo cn3dstyl.glo seqcons.glo cp -p libncbicn3dOGL.a ../lib ranlib ../lib/libncbicn3dOGL.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF aa_ungapped.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_diagnostics.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_engine.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_extend.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_filter.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_gapalign.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_hits.c blast_hits.c: In function 'Blast_HSPListReapByRawScore': blast_hits.c:1723:11: warning: variable 'cutoff' set but not used [-Wunused-but-set-variable] blast_hits.c: At top level: blast_hits.c:2997:12: warning: 's_SortHspWrapEvalue' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_itree.c blast_itree.c: In function 'BlastIntervalTreeMasksHSP': blast_itree.c:1121:10: warning: variable 'tmp_qstart' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_lookup.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_message.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_options.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_seg.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_seqsrc.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_sw.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_setup.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_stat.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_traceback.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_util.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF gapinfo.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF greedy_align.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF link_hsps.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF lookup_wrap.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF na_ungapped.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_math.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF ncbi_std.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF pattern.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF phi_extend.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF phi_lookup.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF lookup_util.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_encoding.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_psi.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_psi_priv.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_kappa.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF matrix_freq_ratios.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_hspstream.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_parameters.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_posit.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF phi_gapalign.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_program.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_query_info.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_tune.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_aalookup.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_nalookup.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_aascan.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_nascan.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_dynarray.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF split_query.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF gencode_singleton.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF index_ungapped.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF hspfilter_collector.c rm -f libblast.a ar cru libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_itree.o blast_lookup.o blast_message.o blast_options.o blast_seg.o blast_seqsrc.o blast_sw.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o link_hsps.o lookup_wrap.o na_ungapped.o ncbi_math.o ncbi_std.o pattern.o phi_extend.o phi_lookup.o lookup_util.o blast_encoding.o blast_psi.o blast_psi_priv.o blast_kappa.o matrix_freq_ratios.o blast_hspstream.o blast_parameters.o blast_posit.o phi_gapalign.o blast_program.o blast_query_info.o blast_tune.o blast_aalookup.o blast_nalookup.o blast_aascan.o blast_nascan.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o hspfilter_collector.o cp -p libblast.a ../lib ranlib ../lib/libblast.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_api.c blast_api.c: In function 's_BlastRPSInfoInit': blast_api.c:149:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:151:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:152:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:153:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:154:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:155:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:156:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:157:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:161:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:162:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_input.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_format.c blast_format.c: In function 's_MBXmlInit': blast_format.c:255:13: warning: variable 'retval' set but not used [-Wunused-but-set-variable] blast_format.c: In function 's_LoadMatrix': blast_format.c:673:18: warning: array subscript has type 'char' [-Wchar-subscripts] blast_format.c:673:18: warning: array subscript has type 'char' [-Wchar-subscripts] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_mtlock.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_options_api.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_prelim.c blast_prelim.c: In function 'Blast_PrelimSearchThreadRun': blast_prelim.c:100:9: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_returns.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_seq.c blast_seq.c: In function 's_SeqLocFillSequenceBuffer': blast_seq.c:529:10: warning: variable 'seq_code' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_seqalign.c blast_seqalign.c: In function 's_HSPListToSeqAlignUngapped': blast_seqalign.c:343:26: warning: variable 'hspset_cnt_old' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_tabular.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF repeats_filter.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF seqsrc_multiseq.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF seqsrc_readdb.c seqsrc_readdb.c: In function 's_ReaddbGetNextChunk': seqsrc_readdb.c:375:11: warning: variable 'real_readdb_entries' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF twoseq_api.c twoseq_api.c: In function 's_TwoSeqBasicFillOptions': twoseq_api.c:100:10: warning: unused variable 'status' [-Wunused-variable] twoseq_api.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF dust_filter.c dust_filter.c: In function 's_GetFilteringLocations': dust_filter.c:171:32: warning: unused variable 'filter_slp_rev' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF blast_message_api.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -fPIC -I../include -DWIN_MOTIF hspfilter_queue.c hspfilter_queue.c: In function 's_BlastHSPQueueInit': hspfilter_queue.c:65:24: warning: unused variable 'q_data' [-Wunused-variable] rm -f libblastapi.a ar cru libblastapi.a blast_api.o blast_input.o blast_format.o blast_mtlock.o blast_options_api.o blast_prelim.o blast_returns.o blast_seq.o blast_seqalign.o blast_tabular.o repeats_filter.o seqsrc_multiseq.o seqsrc_readdb.o twoseq_api.o dust_filter.o blast_message_api.o hspfilter_queue.o cp -p libblastapi.a ../lib ranlib ../lib/libblastapi.a gcc -o asntool -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -L../shlib asntool.c asncode.c ../lib/libncbi.a -lm asntool.c: In function 'Nlm_Main': asntool.c:211:42: warning: unused variable 'objmgrentry' [-Wunused-variable] asncode.c: In function 'AsnCode_SETOF_base_or_user': asncode.c:1602:20: warning: variable 'real_type' set but not used [-Wunused-but-set-variable] asncode.c:1601:20: warning: variable 'valslot' set but not used [-Wunused-but-set-variable] asncode.c: In function 'userobj_SEQSET': asncode.c:2374:9: warning: too many arguments for format [-Wformat-extra-args] asncode.c: In function 'userobj_and_basetype_SETOF': asncode.c:2753:4: warning: too many arguments for format [-Wformat-extra-args] asncode.c:2768:4: warning: too many arguments for format [-Wformat-extra-args] asncode.c:2556:20: warning: variable 'valslot' set but not used [-Wunused-but-set-variable] asncode.c: In function 'AsnCodeIsReallyChoice': asncode.c:3285:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] asncode.c: In function 'AsnCodeCheckFileDoneRoutines': asncode.c:3475:6: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'AsnCodeSpooledPtr' [-Wformat] asncode.c: In function 'AsnIterTakeBufReal': asncode.c:3512:7: warning: format '%x' expects argument of type 'unsigned int', but argument 4 has type 'AsnCodeSpooledPtr' [-Wformat] asncode.c: In function 'AsnCodeFunctionWriteFuncChoiceStart': asncode.c:3707:20: warning: variable 'obj_use' set but not used [-Wunused-but-set-variable] asncode.c: In function 'AsnCodeIter': asncode.c:4321:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] asncode.c: In function 'AsnCode': asncode.c:4644:6: warning: too many arguments for format [-Wformat-extra-args] asncode.c:4400:48: warning: variable 'objnamety' set but not used [-Wunused-but-set-variable] asncode.c: At top level: asncode.c:370:17: warning: 'defptr' defined but not used [-Wunused-variable] asncode.c:372:17: warning: 'defbigint' defined but not used [-Wunused-variable] asncode.c:373:17: warning: 'defreal' defined but not used [-Wunused-variable] asncode.c:374:17: warning: 'defbool' defined but not used [-Wunused-variable] asncode.c:375:17: warning: 'defbyte' defined but not used [-Wunused-variable] cp -p asntool ../bin make[2]: Leaving directory `/build/buildd/ncbi-tools6-6.1.20110713/build' /usr/bin/make -C build -f makenet.unx LCL=lnx CC="gcc " LDFLAGS1="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" NCBI_LINKINGLIBDIR="../shlib" \ CFLAGS1="-c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC" NETENTREZVERSION="2.02c2ASN1SPEC6" \ BLIB31=libvibnet.a OGLLIBS="-lGLU -lGL -lpng " all libncbimla.a libnetblast.a libncbitxc2.a libncbiid1.a shlib make[2]: Entering directory `/build/buildd/ncbi-tools6-6.1.20110713/build' ./ln-if-absent ../connect/test/*.c . ./ln-if-absent ../network/entrez/client/*.h ../include ./ln-if-absent ../network/entrez/client/*.c . ./ln-if-absent ../network/medarch/client/*.h ../include ./ln-if-absent ../network/medarch/client/*.c . ./ln-if-absent ../network/taxonomy/client/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/taxonomy/client/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/taxon1/common/*.h ../include ./ln-if-absent ../network/taxon1/common/*.c . ./ln-if-absent ../network/taxon1/taxon2/*.h ../include ./ln-if-absent ../network/taxon1/taxon2/*.c . ./ln-if-absent ../network/id0arch/client/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/id0arch/client/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/id1arch/*.h ../include ./ln-if-absent ../network/id1arch/*.c . ./ln-if-absent ../network/id2arch/*.h ../include ./ln-if-absent ../network/id2arch/*.c . ./ln-if-absent ../network/spell/client/*.h ../include ./ln-if-absent ../network/spell/client/*.c . ./ln-if-absent ../network/suggest/client/*.h ../include ./ln-if-absent ../network/suggest/client/*.c . ./ln-if-absent ../network/blast3/client/*.h ../include ./ln-if-absent ../network/blast3/client/*.c . ./ln-if-absent ../tools/taxblast.h ../include ./ln-if-absent ../tools/taxblast.c . ./ln-if-absent /*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/misc/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/misc/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ssparse/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ssparse/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libparsn/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libparsn/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/smart/smartnet/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/smart/smartnet/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/www/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/www/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/query/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/query/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/ctlib/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/ctlib/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/oslib/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/oslib/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/idloadlib/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/idloadlib/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/nsclilib/*.h ../include ./ln-if-absent ../network/nsclilib/*.c . ./ln-if-absent ../network/vibnet/*.c . ./ln-if-absent ../network/vibnet/*.h ../include ./ln-if-absent ../cdromlib/*.h ../include ./ln-if-absent ../network/wwwblast/Src/*.c . ./ln-if-absent ../cdromlib/accentr.c . ./ln-if-absent ../cdromlib/accutils.c . ./ln-if-absent ../sequin/*.* . ./ln-if-absent ../demo/entrez.c . ./ln-if-absent ../demo/seqget.c . ./ln-if-absent ../demo/entrcmd.c . ./ln-if-absent ../demo/batch.c . ./ln-if-absent ../demo/qbatch.c . ./ln-if-absent ../demo/elecpcr.c . ./ln-if-absent ../demo/asn2fast.c . ./ln-if-absent ../demo/asn2asn.c . ./ln-if-absent ../demo/cleanasn.c . ./ln-if-absent ../demo/cspeedtest.c . ./ln-if-absent ../demo/sqn2agp.c . ./ln-if-absent ../demo/sugint.c . ./ln-if-absent ../demo/fetchent.c . ./ln-if-absent ../demo/udvmain.c . ./ln-if-absent ../demo/rtestval.c . ./ln-if-absent ../demo/aceread_tst.c . ./ln-if-absent ../demo/asn2ff.c . ./ln-if-absent ../demo/asn2gb.c . ./ln-if-absent ../demo/asn2fsa.c . ./ln-if-absent ../demo/asn2all.c . ./ln-if-absent ../demo/gene2xml.c . ./ln-if-absent ../demo/asnval.c . ./ln-if-absent ../demo/asndisc.c . ./ln-if-absent ../demo/asnbarval.c . ./ln-if-absent ../demo/aceread_tst.c . ./ln-if-absent ../demo/asnmacro.c . ./ln-if-absent ../demo/asnstrip.c . ./ln-if-absent ../demo/tbl2asn.c . ./ln-if-absent ../demo/raw2delt.c . ./ln-if-absent ../demo/flint.c . ./ln-if-absent ../demo/xlint.c . ./ln-if-absent ../demo/diffshift.c . ./ln-if-absent ../demo/gbseqget.c . ./ln-if-absent ../demo/insdseqget.c . ./ln-if-absent ../demo/nps2gps.c . ./ln-if-absent ../demo/testent2.c . ./ln-if-absent ../demo/trna2sap.c . ./ln-if-absent ../demo/trna2tbl.c . ./ln-if-absent ../demo/entrez2.c . ./ln-if-absent ../demo/condense.c . ./ln-if-absent ../demo/spideymain.c . ./ln-if-absent ../demo/dotmain.c . ./ln-if-absent ../demo/ingenmain.c . ./ln-if-absent ../demo/bl2seq.c . ./ln-if-absent ../demo/blastall.c . ./ln-if-absent ../demo/blast_driver.c . ./ln-if-absent ../demo/src_chk.c . ./ln-if-absent ../demo/tbl_chk.c . ./ln-if-absent ../demo/srchnt.c ../demo/srchaa.c ../demo/mts.c ../demo/sigme.c ../demo/dst.c ../demo/ccp.c ../demo/epi.c ../demo/twop.c ../demo/cnsrt.c ../demo/cnsgn.c ../demo/ccpv.c ../demo/dustv.c ../demo/epiv.c ../demo/sigmev.c ../demo/twopv.c ../demo/cnsrtv.c ../demo/cnsgnv.c ../demo/searchv.c . ./ln-if-absent ../network/entrez/server/*.* . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/suggest/server/*.* . chmod -R ug+rw,o+r . echo Waiting...go Waiting...go gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_lib_.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_debug.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_service.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_error.c rm -f libnetcli.a ar cru libnetcli.a ni_lib_.o ni_debug.o ni_service.o ni_error.o cp -p libnetcli.a ../lib ranlib ../lib/libnetcli.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netentr.c netentr.c: In function 's_NetEntTLEvalCount': netentr.c:798:5: warning: "/*" within comment [-Wcomment] netentr.c: In function 's_NetDocSumListGet': netentr.c:856:18: warning: variable 'amp' set but not used [-Wunused-but-set-variable] netentr.c: In function 's_NetTermListByTerm': netentr.c:1212:9: warning: variable 'terms_to_read' set but not used [-Wunused-but-set-variable] netentr.c:1200:14: warning: unused variable 'asnout' [-Wunused-variable] netentr.c: In function 's_NetTermListByPage': netentr.c:1343:14: warning: unused variable 'asnout' [-Wunused-variable] netentr.c: In function 'NetEntTLEval': netentr.c:675:5: warning: 'lsp' may be used uninitialized in this function [-Wuninitialized] netentr.c: In function 'NetEntTLEvalCount': netentr.c:800:8: warning: 'atp' may be used uninitialized in this function [-Wuninitialized] netentr.c:782:16: note: 'atp' was declared here netentr.c: In function 'NetTermListByTerm': netentr.c:1286:19: warning: 'next_page' may be used uninitialized in this function [-Wuninitialized] netentr.c:1210:9: note: 'next_page' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netlib.c netlib.c: In function 'BoolExprAsnWrite': netlib.c:304:16: warning: unused variable 'n' [-Wunused-variable] netlib.c: At top level: netlib.c:93:16: warning: 'loaded' defined but not used [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objneten.c objneten.c: In function 'EntrezNeighborTextAsnRead': objneten.c:2938:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c: In function 'ChildLinkAsnRead': objneten.c:3148:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c: In function 'EntrezHierarchyAsnRead': objneten.c:3442:15: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c: In function 'EntrezBlastreqAsnRead': objneten.c:3705:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c:3704:12: warning: unused variable 'isError' [-Wunused-variable] objneten.c: In function 'EntrezExtraInfoAsnRead': objneten.c:3911:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c:3910:12: warning: unused variable 'isError' [-Wunused-variable] objneten.c: In function 'ClusterArticlesAsnRead': objneten.c:4262:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c:4261:12: warning: unused variable 'isError' [-Wunused-variable] objneten.c: In function 'ClusterRespAsnRead': objneten.c:4455:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c: In function 'DateConstraintsAsnRead': objneten.c:4622:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c: In function 'DateVectorAsnRead': objneten.c:4785:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c:4784:12: warning: unused variable 'isError' [-Wunused-variable] objneten.c: In function 'GetByFidAsnRead': objneten.c:4963:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c:4962:12: warning: unused variable 'isError' [-Wunused-variable] objneten.c: In function 'GetFeatIdsAsnRead': objneten.c:5133:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c:5132:12: warning: unused variable 'isError' [-Wunused-variable] rm -f libnetentr.a ar cru libnetentr.a netentr.o netlib.o objneten.o cp -p libnetentr.a ../lib ranlib ../lib/libnetentr.a ./ln-if-absent accentr.c Naccentr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NETENT_ Naccentr.c Naccentr.c:358:3: warning: missing braces around initializer [-Wmissing-braces] Naccentr.c:358:3: warning: (near initialization for 'AdaptiveDocSumMatrix[0]') [-Wmissing-braces] Naccentr.c: In function 'EntrezDocSumListGet': Naccentr.c:1409:14: warning: variable 'actual' set but not used [-Wunused-but-set-variable] rm -f libncbiNacc.a ar cru libncbiNacc.a Naccentr.o accutils.o cp -p libncbiNacc.a ../lib ranlib ../lib/libncbiNacc.a ./ln-if-absent accentr.c Caccentr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NET_AND_CD_ Caccentr.c Caccentr.c:358:3: warning: missing braces around initializer [-Wmissing-braces] Caccentr.c:358:3: warning: (near initialization for 'AdaptiveDocSumMatrix[0]') [-Wmissing-braces] Caccentr.c: In function 'EntrezDocSumListGet': Caccentr.c:1409:14: warning: variable 'actual' set but not used [-Wunused-but-set-variable] rm -f libncbiCacc.a ar cru libncbiCacc.a Caccentr.o accutils.o cp -p libncbiCacc.a ../lib ranlib ../lib/libncbiCacc.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netcnfg.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" trmlst.c trmlst.c: In function 'FetchFromTermList': trmlst.c:1048:16: warning: variable 'numRead' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" docsum.c docsum.c: In function 'ImportDocSumForm': docsum.c:2298:21: warning: unused variable 'sephead' [-Wunused-variable] docsum.c:2296:21: warning: unused variable 'is_na' [-Wunused-variable] docsum.c:2290:21: warning: unused variable 'choice' [-Wunused-variable] docsum.c: In function 'SaveDocsumProject': docsum.c:3042:16: warning: variable 'sfp' set but not used [-Wunused-but-set-variable] docsum.c: At top level: docsum.c:439:15: warning: 'checkmark' defined but not used [-Wunused-variable] docsum.c: In function 'LaunchStructureViewer': docsum.c:4192:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] docsum.c: In function 'FetchLocalBioseq': docsum.c:1223:6: warning: 'str' may be used uninitialized in this function [-Wuninitialized] rm -f libvibnet.a ar cru libvibnet.a netcnfg.o trmlst.o docsum.o cp -p libvibnet.a ../lib ranlib ../lib/libvibnet.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -DNLM_OBJ_INCL=\"mapmla.h\" objmla.c objmla.c: In function 'MlaRequestFree': objmla.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmla.c: In function 'MlaRequestAsnRead': objmla.c:96:12: warning: unused variable 'isError' [-Wunused-variable] objmla.c: In function 'TitleMsgAsnRead': objmla.c:447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmla.c:446:12: warning: unused variable 'isError' [-Wunused-variable] objmla.c: In function 'TitleMsgListAsnRead': objmla.c:612:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmla.c: In function 'MlaRequestAsnRead': objmla.c:249:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmla.c: In function 'MlaBackAsnRead': objmla.c:902:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medarch.c medarch.c:710:8: warning: 's_MedArchPubSetEntryGetPmId' defined but not used [-Wunused-function] medarch.c:758:8: warning: 's_MedArchPubSetEntryGetUid' defined but not used [-Wunused-function] medarch.c: In function 'MedArchPubSetCreate': medarch.c:1693:30: warning: 'pubSetEAtp' may be used uninitialized in this function [-Wuninitialized] medarch.c:1697:5: warning: 'pubSetAtp' may be used uninitialized in this function [-Wuninitialized] medarch.c:1655:14: warning: 'startAtp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medutil.c rm -f libncbimla.a ar cru libncbimla.a objmla.o medarch.o medutil.o cp -p libncbimla.a ../lib ranlib ../lib/libncbimla.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objblst3.c objblst3.c: In function 'BlastSearchAsnRead': objblst3.c:91:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:90:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastRequestFree': objblst3.c:287:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastRequestAsnRead': objblst3.c:337:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'Cutoff2_cutoff2Free': objblst3.c:999:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastParametersAsnRead': objblst3.c:1027:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'Cutoff2_cutoff2AsnRead': objblst3.c:1422:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'Cutoff_cutoffAsnRead': objblst3.c:1788:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'Cutoff_cutoffFree': objblst3.c:1871:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastMatrixAsnRead': objblst3.c:1936:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastDbinfoAsnRead': objblst3.c:2153:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:2152:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastMaskAsnRead': objblst3.c:2357:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastKABlkAsnRead': objblst3.c:2517:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:2516:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastErrorAsnRead': objblst3.c:2697:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:2696:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastPhialignAsnRead': objblst3.c:2861:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastDbinfoGetAsnRead': objblst3.c:3022:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:3021:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastSeqIdAsnRead': objblst3.c:3187:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:3186:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastSequenceAsnRead': objblst3.c:3364:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:3363:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastPartsAsnRead': objblst3.c:3532:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastQueuedAsnRead': objblst3.c:3694:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:3693:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastProgressAsnRead': objblst3.c:3846:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:3845:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastDeflineAsnRead': objblst3.c:4000:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:3999:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastVersionAsnRead': objblst3.c:4168:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:4167:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'MegaBlastHitAsnRead': objblst3.c:4335:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:4334:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'MegaBlastResultsAsnRead': objblst3.c:4546:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastRequestAsnRead': objblst3.c:430:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objblst3.c: In function 'BlastResponseAsnRead': objblst3.c:791:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objblst3.c: In function 'BlastParametersAsnRead': objblst3.c:1474:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objblst3.c:1421:10: note: 'choice' was declared here objblst3.c:1840:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objblst3.c:1787:10: note: 'choice' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netblap3.c netblap3.c: In function 'BlastNetBioseqFetchFunc': netblap3.c:1835:16: warning: variable 'omdp' set but not used [-Wunused-but-set-variable] netblap3.c: In function 'MegaBlastSeqLocNetCore': netblap3.c:2049:8: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] netblap3.c: At top level: ../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable] ../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function] netblap3.c:430:1: warning: 'BlastSetErrorHook' defined but not used [-Wunused-function] netblap3.c:438:1: warning: 'BlastSetErrorStatus' defined but not used [-Wunused-function] netblap3.c:445:1: warning: 'BlastGetErrorStatus' defined but not used [-Wunused-function] netblap3.c:452:1: warning: 'BlastResetOldHook' defined but not used [-Wunused-function] netblap3.c: In function 'BlastNetMatrixToBlastMatrix': netblap3.c:1212:35: warning: 'index2' may be used uninitialized in this function [-Wuninitialized] netblap3.c: In function 'SubmitRequest': netblap3.c:1763:18: warning: 'bllist' may be used uninitialized in this function [-Wuninitialized] netblap3.c:1698:19: note: 'bllist' was declared here netblap3.c: In function 'TraditionalBlastReportEngine': netblap3.c:2570:11: warning: 'next_seqalign' may be used uninitialized in this function [-Wuninitialized] netblap3.c:2576:21: warning: 'sap' may be used uninitialized in this function [-Wuninitialized] rm -f libnetblast.a ar cru libnetblast.a objblst3.o netblap3.o cp -p libnetblast.a ../lib ranlib ../lib/libnetblast.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objtax1.c objtax1.c: In function 'Taxon1ReqFree': objtax1.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objtax1.c: In function 'Taxon1ReqAsnRead': objtax1.c:96:12: warning: unused variable 'isError' [-Wunused-variable] objtax1.c: In function 'Taxon1InfoAsnRead': objtax1.c:467:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax1.c:466:12: warning: unused variable 'isError' [-Wunused-variable] objtax1.c: In function 'Taxon1ErrorAsnRead': objtax1.c:1067:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax1.c:1066:12: warning: unused variable 'isError' [-Wunused-variable] objtax1.c: In function 'Taxon1NameAsnRead': objtax1.c:1232:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax1.c:1231:12: warning: unused variable 'isError' [-Wunused-variable] objtax1.c: In function 'Taxon1DataAsnRead': objtax1.c:1418:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax1.c:1417:12: warning: unused variable 'isError' [-Wunused-variable] objtax1.c: In function 'Taxon2DataAsnRead': objtax1.c:1606:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax1.c: In function 'Taxon1ReqAsnRead': objtax1.c:265:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objtax1.c: In function 'Taxon1RespAsnRead': objtax1.c:868:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxutil.c taxutil.c: In function 'taxname_match': taxutil.c:66:24: warning: unused variable 'taxstr' [-Wunused-variable] taxutil.c: In function 'get_lineage': taxutil.c:140:28: warning: 'onp' may be used uninitialized in this function [-Wuninitialized] taxutil.c: In function 'get_gcode': taxutil.c:160:23: warning: 'onp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o tc2dproc.o -DTAXSERVICE tc2proc.c tc2proc.c: In function 'getIdByOrgRef': tc2proc.c:407:17: warning: unused variable 'om_flag' [-Wunused-variable] tc2proc.c: In function 'bldLineage': tc2proc.c:1095:10: warning: unused variable 'rank' [-Wunused-variable] tc2proc.c: In function 'storedTaxId': tc2proc.c:2114:17: warning: unused variable 'object_id' [-Wunused-variable] tc2proc.c: In function 'tax1e_needUpdate': tc2proc.c:2181:13: warning: unused variable 'hit_name' [-Wunused-variable] tc2proc.c:2180:13: warning: unused variable 'need_search_name' [-Wunused-variable] tc2proc.c:2179:9: warning: unused variable 'is_species' [-Wunused-variable] tc2proc.c:2176:19: warning: unused variable 'res' [-Wunused-variable] tc2proc.c: At top level: tc2proc.c:403:13: warning: 'getIdByOrgRef' defined but not used [-Wunused-function] tc2proc.c: In function 'mergeOrgMod': tc2proc.c:1619:22: warning: 'lst' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o txcdproc.o -DTAXSERVICE txcdproc.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" parttree.c parttree.c: In function 'tax_ptree_addSubtree': parttree.c:392:13: warning: unused variable 'need_remove' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxcs.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxblast.c taxblast.c: In function 'TXBHtmlReportInternal': taxblast.c:1294:37: warning: variable 'linlines' set but not used [-Wunused-but-set-variable] taxblast.c: At top level: taxblast.c:1902:13: warning: 'getTotalTaxIdCount' defined but not used [-Wunused-function] taxblast.c: In function 'RDTaxLookupReset': taxblast.c:1985:1: warning: control reaches end of non-void function [-Wreturn-type] taxblast.c: In function 'TXBGetTargetGi.isra.2': taxblast.c:501:5: warning: 'gi' may be used uninitialized in this function [-Wuninitialized] rm -f libncbitxc2.a ar cru libncbitxc2.a objtax1.o taxutil.o tc2dproc.o txcdproc.o parttree.o taxcs.o taxblast.o cp -p libncbitxc2.a ../lib ranlib ../lib/libncbitxc2.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1gen.c id1gen.c: In function 'ID1serverRequestFree': id1gen.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] id1gen.c: In function 'ID1serverRequestAsnRead': id1gen.c:90:12: warning: unused variable 'isError' [-Wunused-variable] id1gen.c: In function 'ID1serverMaxcomplexAsnRead': id1gen.c:348:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] id1gen.c:347:12: warning: unused variable 'isError' [-Wunused-variable] id1gen.c: In function 'ID1SeqHistAsnRead': id1gen.c:530:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] id1gen.c:529:12: warning: unused variable 'isError' [-Wunused-variable] id1gen.c: In function 'ID1SeqEntryInfoAsnRead': id1gen.c:979:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] id1gen.c:978:12: warning: unused variable 'isError' [-Wunused-variable] id1gen.c: In function 'ID1blobInfoAsnRead': id1gen.c:1147:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] id1gen.c:1146:12: warning: unused variable 'isError' [-Wunused-variable] id1gen.c: In function 'ID1serverDebugAsnRead': id1gen.c:1368:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] id1gen.c: In function 'ID1serverBackAsnRead': id1gen.c:811:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] id1gen.c: In function 'ID1serverRequestAsnRead': id1gen.c:186:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1arch.c id1arch.c: In function 'ID1ArchSeqEntryGet': id1arch.c:173:7: warning: unused variable 'retval' [-Wunused-variable] id1arch.c: In function 'ID1ArchGIGet': id1arch.c:486:10: warning: unused variable 'retval' [-Wunused-variable] id1arch.c: In function 'SeqHistPrintTable': id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat] id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat] id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat] id1arch.c:563:25: warning: spurious trailing '%' in format [-Wformat] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" accid1.c accid1.c: In function 's_ID1BioseqFetchFunc': accid1.c:262:9: warning: unused variable 'retcode' [-Wunused-variable] rm -f libncbiid1.a ar cru libncbiid1.a id1gen.o id1arch.o accid1.o cp -p libncbiid1.a ../lib ranlib ../lib/libncbiid1.a mkdir ../shlib rm -f ../shlib/*.a ln ../lib/*.a ../shlib cd ../shlib; make -f ../make/makeshlb.unx `ls *.a | sed "s/\.a/.so.6/"` SH1="gcc -o" SH2="-shared *.o" make[3]: Entering directory `/build/buildd/ncbi-tools6-6.1.20110713/shlib' gcc -shared -Wl,-soname=libblastcompadj.so.6 -o libblastcompadj.so.6.1.20110713 \ -Wl,--whole-archive libblastcompadj.a -Wl,--no-whole-archive \ -lm gcc -shared -Wl,-soname=libncbi.so.6 -o libncbi.so.6.1.20110713 \ -Wl,--whole-archive libncbi.a -Wl,--no-whole-archive \ -lm gcc -shared -Wl,-soname=libblast.so.6 -o libblast.so.6.1.20110713 \ -Wl,--whole-archive libblast.a -Wl,--no-whole-archive \ libblastcompadj.so.6.1.20110713 libncbi.so.6.1.20110713 -lm ln -s libblast.so.6.1.20110713 libblast.so.6 ln -s libblast.so.6.1.20110713 libblast.so gcc -shared -Wl,-soname=libncbiobj.so.6 -o libncbiobj.so.6.1.20110713 \ -Wl,--whole-archive libncbiobj.a -Wl,--no-whole-archive \ libncbi.so.6.1.20110713 -lm gcc -shared -Wl,-soname=libncbitool.so.6 -o libncbitool.so.6.1.20110713 \ -Wl,--whole-archive libncbitool.a -Wl,--no-whole-archive \ libblastcompadj.so.6.1.20110713 libncbiobj.so.6.1.20110713 libncbi.so.6.1.20110713 -lm libncbitool.a(pobutil.o): In function `memset': /usr/include/i386-linux-gnu/bits/string3.h:82: warning: memset used with constant zero length parameter; this could be due to transposed parameters gcc -shared -Wl,-soname=libblastapi.so.6 -o libblastapi.so.6.1.20110713 \ -Wl,--whole-archive libblastapi.a -Wl,--no-whole-archive \ libblast.so.6.1.20110713 libncbitool.so.6.1.20110713 libncbiobj.so.6.1.20110713 libncbi.so.6.1.20110713 -lm ln -s libblastapi.so.6.1.20110713 libblastapi.so.6 ln -s libblastapi.so.6.1.20110713 libblastapi.so ln -s libblastcompadj.so.6.1.20110713 libblastcompadj.so.6 ln -s libblastcompadj.so.6.1.20110713 libblastcompadj.so gcc -shared -Wl,-soname=libnetcli.so.6 -o libnetcli.so.6.1.20110713 \ -Wl,--whole-archive libnetcli.a -Wl,--no-whole-archive \ libncbi.so.6.1.20110713 gcc -shared -Wl,-soname=libncbiid1.so.6 -o libncbiid1.so.6.1.20110713 \ -Wl,--whole-archive libncbiid1.a -Wl,--no-whole-archive \ libncbiobj.so.6.1.20110713 libnetcli.so.6.1.20110713 libncbi.so.6.1.20110713 gcc -shared -Wl,-soname=libncbimmdb.so.6 -o libncbimmdb.so.6.1.20110713 \ -Wl,--whole-archive libncbimmdb.a -Wl,--no-whole-archive \ libncbiid1.so.6.1.20110713 libncbitool.so.6.1.20110713 libncbiobj.so.6.1.20110713 libncbi.so.6.1.20110713 -lm gcc -shared -Wl,-soname=libvibrantOGL.so.6 -o libvibrantOGL.so.6.1.20110713 \ -Wl,--whole-archive libvibrantOGL.a -Wl,--no-whole-archive \ libncbiobj.so.6.1.20110713 libncbi.so.6.1.20110713 -lGLU -lGL -lpng -lXm -lXmu -lXt -lX11 -lm gcc -shared -Wl,-soname=libncbidesk.so.6 -o libncbidesk.so.6.1.20110713 \ -Wl,--whole-archive libncbidesk.a -Wl,--no-whole-archive \ libblastapi.so.6.1.20110713 libncbimmdb.so.6.1.20110713 libncbitool.so.6.1.20110713 libvibrantOGL.so.6.1.20110713 libncbiobj.so.6.1.20110713 libncbi.so.6.1.20110713 -lm gcc -shared -Wl,-soname=libddvlib.so.6 -o libddvlib.so.6.1.20110713 \ -Wl,--whole-archive libddvlib.a -Wl,--no-whole-archive \ libncbidesk.so.6.1.20110713 libvibrantOGL.so.6.1.20110713 libncbitool.so.6.1.20110713 libncbiobj.so.6.1.20110713 libncbi.so.6.1.20110713 ln -s libddvlib.so.6.1.20110713 libddvlib.so.6 ln -s libddvlib.so.6.1.20110713 libddvlib.so ln -s libncbi.so.6.1.20110713 libncbi.so.6 ln -s libncbi.so.6.1.20110713 libncbi.so ln -s libncbiNacc.so.6.1.20110713 libncbiCacc.so.6.1.20110713 ln -s libncbiCacc.so.6.1.20110713 libncbiCacc.so.6 ln -s libncbiCacc.so.6.1.20110713 libncbiCacc.so gcc -shared -Wl,-soname=libncbicdr.so.6 -o libncbicdr.so.6.1.20110713 \ -Wl,--whole-archive libncbicdr.a -Wl,--no-whole-archive \ libncbiobj.so.6.1.20110713 libncbi.so.6.1.20110713 gcc -shared -Wl,-soname=libncbiNacc.so.6 -o libncbiNacc.so.6.1.20110713 \ -Wl,--whole-archive libncbiNacc.a -Wl,--no-whole-archive \ libncbicdr.so.6.1.20110713 libnetentr.a libnetcli.so.6.1.20110713 libncbiobj.so.6.1.20110713 libncbi.so.6.1.20110713 -lm ln -s libncbiNacc.so.6.1.20110713 libncbiNacc.so.6 ln -s libncbiNacc.so.6.1.20110713 libncbiNacc.so ln -s libncbiNacc.so.6.1.20110713 libncbiacc.so.6.1.20110713 ln -s libncbiacc.so.6.1.20110713 libncbiacc.so.6 ln -s libncbiacc.so.6.1.20110713 libncbiacc.so ln -s libncbicdr.so.6.1.20110713 libncbicdr.so.6 ln -s libncbicdr.so.6.1.20110713 libncbicdr.so ln -s libncbicn3dOGL.so.6.1.20110713 libncbicn3d.so.6.1.20110713 ln -s libncbicn3d.so.6.1.20110713 libncbicn3d.so.6 ln -s libncbicn3d.so.6.1.20110713 libncbicn3d.so gcc -shared -Wl,-soname=libncbicn3dOGL.so.6 -o libncbicn3dOGL.so.6.1.20110713 \ -Wl,--whole-archive libncbicn3dOGL.a -Wl,--no-whole-archive \ libncbiNacc.so.6.1.20110713 libddvlib.so.6.1.20110713 libncbidesk.so.6.1.20110713 libncbimmdb.so.6.1.20110713 libncbitool.so.6.1.20110713 libncbiobj.so.6.1.20110713 libncbi.so.6.1.20110713 libvibrantOGL.so.6.1.20110713 -lm ln -s libncbicn3dOGL.so.6.1.20110713 libncbicn3dOGL.so.6 ln -s libncbicn3dOGL.so.6.1.20110713 libncbicn3dOGL.so ln -s libncbidesk.so.6.1.20110713 libncbidesk.so.6 ln -s libncbidesk.so.6.1.20110713 libncbidesk.so ln -s libncbiid1.so.6.1.20110713 libncbiid1.so.6 ln -s libncbiid1.so.6.1.20110713 libncbiid1.so gcc -shared -Wl,-soname=libncbimla.so.6 -o libncbimla.so.6.1.20110713 \ -Wl,--whole-archive libncbimla.a -Wl,--no-whole-archive \ libncbiobj.so.6.1.20110713 libnetcli.so.6.1.20110713 libncbi.so.6.1.20110713 ln -s libncbimla.so.6.1.20110713 libncbimla.so.6 ln -s libncbimla.so.6.1.20110713 libncbimla.so ln -s libncbimmdb.so.6.1.20110713 libncbimmdb.so.6 ln -s libncbimmdb.so.6.1.20110713 libncbimmdb.so ln -s libncbiobj.so.6.1.20110713 libncbiobj.so.6 ln -s libncbiobj.so.6.1.20110713 libncbiobj.so ln -s libncbitool.so.6.1.20110713 libncbitool.so.6 ln -s libncbitool.so.6.1.20110713 libncbitool.so gcc -shared -Wl,-soname=libncbitxc2.so.6 -o libncbitxc2.so.6.1.20110713 \ -Wl,--whole-archive libncbitxc2.a -Wl,--no-whole-archive \ libncbitool.so.6.1.20110713 libnetcli.so.6.1.20110713 libncbiobj.so.6.1.20110713 libncbi.so.6.1.20110713 -lm ln -s libncbitxc2.so.6.1.20110713 libncbitxc2.so.6 ln -s libncbitxc2.so.6.1.20110713 libncbitxc2.so gcc -shared -Wl,-soname=libnetblast.so.6 -o libnetblast.so.6.1.20110713 \ -Wl,--whole-archive libnetblast.a -Wl,--no-whole-archive \ libncbitool.so.6.1.20110713 libnetcli.so.6.1.20110713 libncbiobj.so.6.1.20110713 libncbi.so.6.1.20110713 ln -s libnetblast.so.6.1.20110713 libnetblast.so.6 ln -s libnetblast.so.6.1.20110713 libnetblast.so ln -s libnetcli.so.6.1.20110713 libnetcli.so.6 ln -s libnetcli.so.6.1.20110713 libnetcli.so ln -s libncbiNacc.so.6.1.20110713 libnetentr.so.6.1.20110713 ln -s libnetentr.so.6.1.20110713 libnetentr.so.6 ln -s libnetentr.so.6.1.20110713 libnetentr.so gcc -shared -Wl,-soname=libvibgif.so.6 -o libvibgif.so.6.1.20110713 \ -Wl,--whole-archive libvibgif.a -Wl,--no-whole-archive \ libncbi.so.6.1.20110713 -lm ln -s libvibgif.so.6.1.20110713 libvibgif.so.6 ln -s libvibgif.so.6.1.20110713 libvibgif.so gcc -shared -Wl,-soname=libvibnet.so.6 -o libvibnet.so.6.1.20110713 \ -Wl,--whole-archive libvibnet.a -Wl,--no-whole-archive \ libncbiNacc.so.6.1.20110713 libncbidesk.so.6.1.20110713 libncbimmdb.so.6.1.20110713 libvibrantOGL.so.6.1.20110713 libncbitool.so.6.1.20110713 libncbicdr.so.6.1.20110713 libncbiobj.so.6.1.20110713 libncbi.so.6.1.20110713 ln -s libvibnet.so.6.1.20110713 libvibnet.so.6 ln -s libvibnet.so.6.1.20110713 libvibnet.so ln -s libvibrantOGL.so.6.1.20110713 libvibrant.so.6.1.20110713 ln -s libvibrant.so.6.1.20110713 libvibrant.so.6 ln -s libvibrant.so.6.1.20110713 libvibrant.so ln -s libvibrantOGL.so.6.1.20110713 libvibrantOGL.so.6 ln -s libvibrantOGL.so.6.1.20110713 libvibrantOGL.so make[3]: Leaving directory `/build/buildd/ncbi-tools6-6.1.20110713/shlib' rm -f ../shlib/*.a make[2]: Leaving directory `/build/buildd/ncbi-tools6-6.1.20110713/build' /usr/bin/make -C build clean make[2]: Entering directory `/build/buildd/ncbi-tools6-6.1.20110713/build' rm -f *.[acho] *.glo make[2]: Leaving directory `/build/buildd/ncbi-tools6-6.1.20110713/build' /usr/bin/make -C build all LCL=lnx CC="gcc " LDFLAGS1="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" NCBI_LINKINGLIBDIR="../shlib" \ CFLAGS1="-c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG" \ LIB4=libvibrant.a LIB20=libncbidesk.a LIB28=libvibgif.a \ LIB30=libncbicn3d.a LIB45=libddvlib.a LIB400=libvibrantOGL.a LIB3000=libncbicn3dOGL.a make[2]: Entering directory `/build/buildd/ncbi-tools6-6.1.20110713/build' chmod -R ug+rw,o+r . ../include ./ln-if-absent ../corelib/tsprintf.h ../include ./ln-if-absent ../corelib/gifgen.h ../include ./ln-if-absent ../corelib/ncbi*.h ../include ./ln-if-absent ../corelib/tree*.h ../include ./ln-if-absent ../corelib/regex.h ../include ./ln-if-absent ../corelib/matrix.h ../include ./ln-if-absent ../corelib/binary.h ../include ./ln-if-absent ../corelib/morefile/*.h ../include ./ln-if-absent ../corelib/morefile/*.c . ./ln-if-absent ../link/macmet/MoreCarbonAccessors.h ../include ./ln-if-absent ../corelib/ncbilcl.lnx ../include/ncbilcl.h ./ln-if-absent ../corelib/*.c . ./ln-if-absent ../corelib/core*.h . ./ln-if-absent ../asnlib/*.h . rm -f ../include/asn.h mv asn.h ../include ./ln-if-absent ../asnlib/*.c . ./ln-if-absent ../connect/*.c . ./ln-if-absent ../connect/ncbi_ansi_ext.h . ./ln-if-absent ../connect/ncbi_assert.h . ./ln-if-absent ../connect/ncbi_priv.h . ./ln-if-absent ../connect/ncbi_comm.h . ./ln-if-absent ../connect/ncbi_config.h . ./ln-if-absent ../connect/ncbi_connssl.h . ./ln-if-absent ../connect/ncbi_lbsm.h . make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../connect/ncbi_lbsm_ipc.h . make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../connect/ncbi_host_infop.h . ./ln-if-absent ../connect/ncbi_server_infop.h . ./ln-if-absent ../connect/ncbi_servicep.h . ./ln-if-absent ../connect/ncbi_socketp.h . ./ln-if-absent ../connect/ncbi_dispd.h . ./ln-if-absent ../connect/ncbi_lbsmd.h . ./ln-if-absent ../connect/ncbi_local.h . ./ln-if-absent ../connect/ncbi_lb.h . ./ln-if-absent ../connect/ncbi_version.h . ./ln-if-absent ../connect/ncbi_base64.h . ./ln-if-absent ../connect/urlquery.h ../include mkdir ../include/connect mkdir: cannot create directory `../include/connect': File exists make[2]: [copy] Error 1 (ignored) chmod ug+rw,o+r ../include/connect cp -fp ../connect/ncbi_*.h ../connect/connect_export.h ../include/connect ./ln-if-absent ../util/tables/*.c . mkdir -p ../include/util/tables cp -fp ../util/tables/*.h ../include/util/tables ./ln-if-absent ../util/creaders/*.c . mkdir -p ../include/util/creaders cp -fp ../util/creaders/*.h ../include/util/creaders ./ln-if-absent ../ctools/*.c . ./ln-if-absent ../ctools/*.h . mkdir ../include/ctools mkdir: cannot create directory `../include/ctools': File exists make[2]: [copy] Error 1 (ignored) chmod ug+rw,o+r ../include/ctools cp -fp ../ctools/*.h ../include/ctools ./ln-if-absent ../object/*.c . ./ln-if-absent ../object/*.h ../include ./ln-if-absent ../access/*.c . ./ln-if-absent ../access/*.h ../include ./ln-if-absent ../asnstat/*.h ../include ./ln-if-absent ../api/*.h ../include ./ln-if-absent ../api/*.c . ./ln-if-absent ../api/*.inc . ./ln-if-absent ../cdromlib/*.h ../include ./ln-if-absent ../cdromlib/*.c . ./ln-if-absent ../vibrant/*.h ../include ./ln-if-absent ../vibrant/*.c . ./ln-if-absent ../desktop/*.h ../include ./ln-if-absent ../desktop/*.c . ./ln-if-absent ../biostruc/*.h ../include ./ln-if-absent ../biostruc/*.c . ./ln-if-absent ../biostruc/cdd/*.h ../include ./ln-if-absent ../biostruc/cdd/*.c . ./ln-if-absent ../biostruc/cn3d/*.h ../include ./ln-if-absent ../biostruc/cn3d/*.c . ./ln-if-absent ../tools/*.h ../include ./ln-if-absent ../tools/*.c . ./ln-if-absent ../cn3d/*.h ../include ./ln-if-absent ../cn3d/*.c . ./ln-if-absent ../gif/*.c . ./ln-if-absent ../gif/*.h ../include ./ln-if-absent ../ddv/*.h ../include ./ln-if-absent ../ddv/*.c . ./ln-if-absent ../regexp/*.c . ./ln-if-absent ../regexp/*.h ../include ./ln-if-absent ../internal/compr/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/compr/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libindx/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libindx/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libpars/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libpars/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/*.dat . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/ideochr*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/ideoorgs.h . make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ccap/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ccap/*.dat . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ccap/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ncbidraw.c ncbidrwg.c ./ln-if-absent ncbithr.c ncbithrs.c ./ln-if-absent ../network/nsclilib/*.h ../include ./ln-if-absent ../network/blast3/client/*.h ../include ./ln-if-absent ../network/id1arch/*.h ../include ./ln-if-absent ../network/id2arch/*.h ../include mkdir -p ../include/algo/blast/core ./ln-if-absent ../algo/blast/core/*.c . ./ln-if-absent ../algo/blast/core/*.h . ./ln-if-absent ../algo/blast/core/*.inl . cp -fp ../algo/blast/core/*.h ../include/algo/blast/core mkdir -p ../include/algo/blast/composition_adjustment ./ln-if-absent ../algo/blast/composition_adjustment/*.c . cp -fp ../algo/blast/composition_adjustment/*.h \ ../include/algo/blast/composition_adjustment mkdir -p ../include/algo/blast/api ./ln-if-absent ../algo/blast/api/*.c . cp -fp ../algo/blast/api/*.h ../include/algo/blast/api chmod -R ug+rw,o+r . echo Waiting...go Waiting...go gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbithr.c ncbithr.c: In function 's_TlsDestroyAll': ncbithr.c:2529:11: warning: variable 'err_code' set but not used [-Wunused-but-set-variable] cp -p ncbithr.o ../lib gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbimain.c ncbimain.c:82:1: warning: return type defaults to 'int' [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbibs.c ncbibs.c: In function 'Nlm_BSMerge': ncbibs.c:106:3: warning: statement with no effect [-Wunused-value] ncbibs.c: In function 'Nlm_BSAdd': ncbibs.c:210:4: warning: statement with no effect [-Wunused-value] ncbibs.c:222:4: warning: statement with no effect [-Wunused-value] ncbibs.c:223:4: warning: statement with no effect [-Wunused-value] ncbibs.c: In function 'Nlm_BSDelete': ncbibs.c:336:4: warning: statement with no effect [-Wunused-value] ncbibs.c:341:4: warning: statement with no effect [-Wunused-value] ncbibs.c: In function 'Nlm_BSWrite': ncbibs.c:594:3: warning: statement with no effect [-Wunused-value] ncbibs.c: In function 'Nlm_BSRead': ncbibs.c:658:3: warning: statement with no effect [-Wunused-value] ncbibs.c: In function 'Nlm_BSGetByte': ncbibs.c:702:2: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF wwwutils.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbierr.c In file included from /usr/include/string.h:642:0, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from corepriv.h:85, from ncbierr.c:235: In function 'strncat', inlined from 'ErrMsgRoot_fopen.isra.1' at ncbierr.c:955:20: /usr/include/i386-linux-gnu/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbienv.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbifile.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbiprop.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbimath.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbimem.c ncbimem.c:181:0: warning: "__USE_BSD" redefined [enabled by default] /usr/include/features.h:293:0: note: this is the location of the previous definition gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbimisc.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbimsg.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbistr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbisgml.c In file included from /usr/include/string.h:642:0, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from ncbisgml.c:80: In function 'strncat', inlined from 'Nlm_Sgml2Ascii' at ncbisgml.c:265:12: /usr/include/i386-linux-gnu/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] In function 'strncat', inlined from 'Nlm_Sgml2Ascii' at ncbisgml.c:284:12: /usr/include/i386-linux-gnu/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] In function 'strncat', inlined from 'Nlm_Sgml2AsciiLen' at ncbisgml.c:340:12: /usr/include/i386-linux-gnu/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] In function 'strncat', inlined from 'Nlm_Sgml2AsciiLen' at ncbisgml.c:354:12: /usr/include/i386-linux-gnu/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbitime.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbilang.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF asnbufo.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF asndebin.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF asnenbin.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF asngen.c asngen.c: In function 'AsnFindNthPieceOfObject': asngen.c:540:16: warning: variable 'aeop' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF asnio.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF asnlex.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF asnlext.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF asnout.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF asnprint.c asnprint.c: In function 'GetXMLModuleName': asnprint.c:102:2: warning: statement with no effect [-Wunused-value] asnprint.c: In function 'AsnPrintCloseStruct': asnprint.c:1742:7: warning: variable 'isa' set but not used [-Wunused-but-set-variable] asnprint.c: In function 'AsnPrintModuleXMLInc': asnprint.c:2063:10: warning: variable 'ptr' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF asntypes.c asntypes.c: In function 'AsnTreeLoad': asntypes.c:1274:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] asntypes.c:1288:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] asntypes.c:1301:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] asntypes.c:1333:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF asngenob.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF gifgen.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF togif.c togif.c: In function 'gdImageCreateFromGif': togif.c:961:12: warning: variable 'AspectRatio' set but not used [-Wunused-but-set-variable] togif.c:960:12: warning: variable 'Background' set but not used [-Wunused-but-set-variable] togif.c:959:12: warning: variable 'ColorResolution' set but not used [-Wunused-but-set-variable] gcc -DNCBI_NOTHREADS_AVAIL -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbithrs.c ncbithrs.c: In function 's_TlsDestroyAll': ncbithrs.c:2529:11: warning: unused variable 'err_code' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -DHAVE_STRING_H -DREGEX_MALLOC regex.c regex.c: In function 're_match_2': regex.c:3768:19: warning: unused variable 'destination' [-Wunused-variable] regex.c:3915:11: warning: unused variable 'destination' [-Wunused-variable] regex.c:3968:11: warning: unused variable 'destination' [-Wunused-variable] regex.c:4071:25: warning: variable 'sdummy' set but not used [-Wunused-but-set-variable] regex.c:4070:28: warning: variable 'pdummy' set but not used [-Wunused-but-set-variable] regex.c:4107:11: warning: unused variable 'destination' [-Wunused-variable] regex.c:4120:11: warning: unused variable 'destination' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF tsprintf.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbiargs.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF tree.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF matrix.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_socket.c ncbi_socket.c: In function 's_GetLocalPort': ncbi_socket.c:533:33: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign] /usr/include/i386-linux-gnu/sys/socket.h:119:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c: In function 's_IsConnected': ncbi_socket.c:2528:9: warning: pointer targets in passing argument 5 of 'getsockopt' differ in signedness [-Wpointer-sign] /usr/include/i386-linux-gnu/sys/socket.h:190:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c: In function 'TRIGGER_Create': ncbi_socket.c:4046:18: warning: unused variable 'x_id' [-Wunused-variable] ncbi_socket.c: In function 's_CreateListening': ncbi_socket.c:4498:9: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign] /usr/include/i386-linux-gnu/sys/socket.h:119:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c: In function 's_Accept': ncbi_socket.c:4763:5: warning: pointer targets in passing argument 3 of 'accept' differ in signedness [-Wpointer-sign] /usr/include/i386-linux-gnu/sys/socket.h:214:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c: In function 'SOCK_CreateOnTopEx': ncbi_socket.c:5189:5: warning: pointer targets in passing argument 3 of 'getpeername' differ in signedness [-Wpointer-sign] /usr/include/i386-linux-gnu/sys/socket.h:133:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c:5225:13: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign] /usr/include/i386-linux-gnu/sys/socket.h:119:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' ncbi_socket.c: In function 'DSOCK_RecvMsg': ncbi_socket.c:6803:35: warning: pointer targets in passing argument 6 of 'recvfrom' differ in signedness [-Wpointer-sign] /usr/include/i386-linux-gnu/bits/socket2.h:65:1: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *' gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_buffer.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_types.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_core.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_core_c.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_util.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_priv.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_ansi_ext.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_connection.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_connector.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_connutil.c ncbi_connutil.c: In function 'ConnNetInfo_Clone': ncbi_connutil.c:1023:17: warning: variable 'svc' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_file_connector.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_heapmgr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_http_connector.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_memory_connector.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_lbsmd_stub.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_host_info.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_server_info.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_service.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_version.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_service_connector.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_ftp_connector.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_dispd.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_lb.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_local.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_socket_connector.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF urlquery.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF binary.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_sendmail.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_base64.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF asn_connection.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF raw_scoremat.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF drwnflpt.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF drwnfspc.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF drwnmfls.c rm -f libncbi.a ar cru libncbi.a ncbimain.o ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o matrix.o ncbi_socket.o ncbi_buffer.o ncbi_types.o ncbi_core.o ncbi_core_c.o ncbi_util.o ncbi_priv.o ncbi_ansi_ext.o ncbi_connection.o ncbi_connector.o ncbi_connutil.o ncbi_file_connector.o ncbi_heapmgr.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_lbsmd_stub.o ncbi_host_info.o ncbi_server_info.o ncbi_service.o ncbi_version.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_dispd.o ncbi_lb.o ncbi_local.o ncbi_socket_connector.o urlquery.o binary.o ncbi_sendmail.o ncbi_base64.o asn_connection.o raw_scoremat.o drwnflpt.o drwnfspc.o drwnmfls.o cp -p libncbi.a ../lib ranlib ../lib/libncbi.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objacces.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objalign.c objalign.c: In function 'CommonSeqAlignLabelFunc': objalign.c:135:27: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SplicedSegAsnRead': objalign.c:2160:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SparseSegAsnRead': objalign.c:2400:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SplicedExonAsnRead': objalign.c:2591:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SplicedSegModifierFree': objalign.c:2849:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objalign.c: In function 'ProductPosFree': objalign.c:3022:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SplicedExonChunkFree': objalign.c:3195:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SpliceSiteAsnRead': objalign.c:3437:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'ProtPosAsnRead': objalign.c:3591:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SparseAlignAsnRead': objalign.c:3760:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SparseSegExtAsnRead': objalign.c:3979:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalign.c: In function 'SplicedExonChunkAsnRead': objalign.c:3296:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objalign.c: In function 'SplicedSegModifierAsnRead': objalign.c:2929:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objall.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objbibli.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objfeat.c objfeat.c: In function 'ModelEvidenceSupportAsnRead': objfeat.c:1494:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'ExperimentSupportAsnRead': objfeat.c:1739:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'ProgramIdAsnRead': objfeat.c:1921:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'EvidenceBasisAsnRead': objfeat.c:2088:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'InferenceSupportAsnRead': objfeat.c:2252:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'ModelEvidenceItemAsnRead': objfeat.c:2465:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'SeqFeatSupportAsnRead': objfeat.c:2667:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'RNAQualAsnRead': objfeat.c:4192:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'RNAQualSetAsnRead': objfeat.c:4341:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'RNAGenAsnRead': objfeat.c:4469:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'GeneNomenclatureAsnRead': objfeat.c:4649:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'PCRPrimerAsnRead': objfeat.c:8191:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'PCRPrimerSetAsnRead': objfeat.c:8333:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'PCRReactionAsnRead': objfeat.c:8454:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'PCRReactionSetAsnRead': objfeat.c:8597:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'CloneRefAsnRead': objfeat.c:8724:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'CloneSeqSetAsnRead': objfeat.c:8914:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'CloneSeqAsnRead': objfeat.c:9044:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'SomaticOriginAsnRead': objfeat.c:9382:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'SomaticOriginConditionAsnRead': objfeat.c:9461:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'VariationRefAsnRead': objfeat.c:9540:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'ConsequenceAsnWrite': objfeat.c:10101:12: warning: variable 'av' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'Consequence_loss_of_heterozygosityAsnRead': objfeat.c:10561:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'Consequence_frameshiftAsnRead': objfeat.c:10639:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'VarRefDataFree': objfeat.c:10739:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'VarRefDataSetAsnRead': objfeat.c:10792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'Consequence_elementFree': objfeat.c:10986:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'VariationInstAsnRead': objfeat.c:11115:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: At top level: objfeat.c:11264:1: warning: "/*" within comment [-Wcomment] objfeat.c: In function 'VariantPropertiesAsnRead': objfeat.c:11293:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'PhenotypeAsnRead': objfeat.c:11614:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'PopulationDataAsnRead': objfeat.c:11810:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'ExtLocAsnRead': objfeat.c:12023:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'Seq_seqFree': objfeat.c:12188:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'DeltaItemAsnRead': objfeat.c:12221:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objfeat.c: In function 'Consequence_elementAsnRead': objfeat.c:10528:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objfeat.c: In function 'CodeBreakAsnWrite': objfeat.c:3647:19: warning: 'tmp' may be used uninitialized in this function [-Wuninitialized] objfeat.c: In function 'VarRefDataAsnRead': objfeat.c:10954:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objgen.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objloc.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objmedli.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objpub.c objpub.c: In function 'PubLabelUnique': objpub.c:1353:17: warning: unused variable 'pmid' [-Wunused-variable] objpub.c:1353:7: warning: unused variable 'muid' [-Wunused-variable] objpub.c: In function 'PubSetAsnRead': objpub.c:869:13: warning: 'func' may be used uninitialized in this function [-Wuninitialized] objpub.c:880:25: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objres.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objscoremat.c objscoremat.c: In function 'PssmAsnRead': objscoremat.c:93:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'PssmIntermediateDataAsnRead': objscoremat.c:336:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'PssmFinalDataAsnRead': objscoremat.c:544:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'PssmParametersAsnRead': objscoremat.c:759:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'PssmWithParametersAsnRead': objscoremat.c:936:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'BlockPropertyAsnRead': objscoremat.c:1102:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'CoreBlockAsnRead': objscoremat.c:1275:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'LoopConstraintAsnRead': objscoremat.c:1463:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'CoreDefAsnRead': objscoremat.c:1626:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objscoremat.c: In function 'FormatRpsDbParametersAsnRead': objscoremat.c:1794:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objseq.c objseq.c: In function 'SeqGapAsnRead': objseq.c:1602:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objseq.c: In function 'SeqDescrAsnWriteExtra': objseq.c:1860:48: warning: variable 'had_anp' set but not used [-Wunused-but-set-variable] objseq.c: In function 'SeqDescAsnRead': objseq.c:2283:28: warning: 'tmp' may be used uninitialized in this function [-Wuninitialized] objseq.c: In function 'BioseqAsnRead': objseq.c:976:27: warning: 'osp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objblock.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objcode.c objcode.c:45:51: warning: "/*" within comment [-Wcomment] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objsset.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objsub.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objprt.c objprt.c: In function 'PrintFormBooleanAsnRead': objprt.c:877:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'PrintFormEnumAsnRead': objprt.c:992:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'PrintFormTextAsnRead': objprt.c:1100:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'UserFormatAsnRead': objprt.c:1209:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'PrintFormAsnRead': objprt.c:591:6: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'PrintFormatAsnRead': objprt.c:429:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'PrintFormBlockAsnRead': objprt.c:755:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] objprt.c: In function 'PrintTemplateAsnRead': objprt.c:247:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objfdef.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objalignloc.c objalignloc.c: In function 'AlignLocSetAsnRead': objalignloc.c:69:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalignloc.c: In function 'Loc_locFree': objalignloc.c:196:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objalignloc.c: In function 'AlignLocAsnRead': objalignloc.c:233:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalignloc.c:232:12: warning: unused variable 'isError' [-Wunused-variable] objalignloc.c: In function 'Loc_locAsnRead': objalignloc.c:313:12: warning: unused variable 'isError' [-Wunused-variable] objalignloc.c: In function 'AlignIdFree': objalignloc.c:525:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objalignloc.c: In function 'AlignIdAsnRead': objalignloc.c:557:12: warning: unused variable 'isError' [-Wunused-variable] objalignloc.c: In function 'AlignBoxAsnRead': objalignloc.c:746:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalignloc.c:745:12: warning: unused variable 'isError' [-Wunused-variable] objalignloc.c: In function 'AlignRowsAsnRead': objalignloc.c:925:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalignloc.c:924:12: warning: unused variable 'isError' [-Wunused-variable] objalignloc.c: In function 'AlignColumnsAsnRead': objalignloc.c:1086:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objalignloc.c:1085:12: warning: unused variable 'isError' [-Wunused-variable] objalignloc.c: In function 'AlignIdAsnRead': objalignloc.c:613:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objtable.c objtable.c: In function 'SeqTableColumnInfoAsnRead': objtable.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtable.c:86:12: warning: unused variable 'isError' [-Wunused-variable] objtable.c: In function 'SeqTableColumnAsnRead': objtable.c:268:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtable.c:267:12: warning: unused variable 'isError' [-Wunused-variable] objtable.c: In function 'SeqTableColumnAsnWrite': objtable.c:364:12: warning: unused variable 'av' [-Wunused-variable] objtable.c: In function 'SeqTableAsnRead': objtable.c:472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtable.c: In function 'CommonStringTableAsnRead': objtable.c:654:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtable.c: In function 'CommonStringTableAsnWrite': objtable.c:729:12: warning: unused variable 'av' [-Wunused-variable] objtable.c: In function 'CommonBytesTableAsnRead': objtable.c:815:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtable.c: In function 'CommonBytesTableAsnWrite': objtable.c:890:12: warning: unused variable 'av' [-Wunused-variable] objtable.c: In function 'SeqTableSingleDataFree': objtable.c:1220:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objtable.c: In function 'SeqTableSingleDataAsnRead': objtable.c:1264:12: warning: unused variable 'isError' [-Wunused-variable] objtable.c: In function 'SeqTableMultiDataAsnRead': objtable.c:1106:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objtable.c: In function 'SeqTableSingleDataAsnRead': objtable.c:1349:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objtable.c: In function 'SeqTableSparseIndexAsnRead': objtable.c:1554:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objpubme.c objpubme.c: In function 'PubmedEntryAsnRead': objpubme.c:89:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objpubme.c: In function 'PubmedUrlAsnRead': objpubme.c:285:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objpubme.c:284:12: warning: unused variable 'isError' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objmdrs.c objmdrs.c: In function 'MedlarsEntryAsnRead': objmdrs.c:85:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmdrs.c: In function 'MedlarsRecordAsnRead': objmdrs.c:256:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmdrs.c:255:12: warning: unused variable 'isError' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objproj.c objproj.c: In function 'ProjectAsnRead': objproj.c:116:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objproj.c:115:12: warning: unused variable 'isError' [-Wunused-variable] objproj.c: In function 'ProjectDescrAsnRead': objproj.c:718:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objproj.c: In function 'ProjdescFree': objproj.c:852:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objproj.c: In function 'ProjdescAsnRead': objproj.c:893:12: warning: unused variable 'isError' [-Wunused-variable] objproj.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] objproj.c: In function 'ProjdescAsnRead': objproj.c:953:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objgbseq.c objgbseq.c: In function 'GBSetAsnRead': objgbseq.c:68:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBSeqAsnRead': objgbseq.c:229:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBReferenceAsnRead': objgbseq.c:725:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBCommentAsnRead': objgbseq.c:963:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBStrucCommentAsnRead': objgbseq.c:1127:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBFeatureAsnRead': objgbseq.c:1295:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBFeatureSetAsnRead': objgbseq.c:1519:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBAltSeqDataAsnRead': objgbseq.c:1683:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBXrefAsnRead': objgbseq.c:1846:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBCommentParagraphAsnRead': objgbseq.c:2012:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBCommentItemAsnRead': objgbseq.c:2163:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBStrucCommentItemAsnRead': objgbseq.c:2330:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBIntervalAsnRead': objgbseq.c:2506:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBQualifierAsnRead': objgbseq.c:2716:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objgbseq.c: In function 'GBAltSeqItemAsnRead': objgbseq.c:2887:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objtseq.c objtseq.c: In function 'TSeqAsnRead': objtseq.c:89:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtseq.c: In function 'TSeqSetAsnRead': objtseq.c:322:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtseq.c: In function 'BioseqToTSeq': objtseq.c:448:8: warning: variable 'seqcode' set but not used [-Wunused-but-set-variable] objtseq.c: In function 'BioseqToMiniTSeq': objtseq.c:560:8: warning: variable 'seqcode' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objinsdseq.c objinsdseq.c: In function 'INSDSetAsnRead': objinsdseq.c:68:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDSeqAsnRead': objinsdseq.c:229:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDReferenceAsnRead': objinsdseq.c:725:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDCommentAsnRead': objinsdseq.c:963:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDStrucCommentAsnRead': objinsdseq.c:1127:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDFeatureAsnRead': objinsdseq.c:1295:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDFeatureSetAsnRead': objinsdseq.c:1519:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDAltSeqDataAsnRead': objinsdseq.c:1683:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDXrefAsnRead': objinsdseq.c:1846:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDCommentParagraphAsnRead': objinsdseq.c:2012:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDCommentItemAsnRead': objinsdseq.c:2163:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDStrucCommentItemAsnRead': objinsdseq.c:2330:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDIntervalAsnRead': objinsdseq.c:2506:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDQualifierAsnRead': objinsdseq.c:2716:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objinsdseq.c: In function 'INSDAltSeqItemAsnRead': objinsdseq.c:2887:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objmacro.c objmacro.c: In function 'AECRActionAsnRead': objmacro.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:86:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseActionAsnRead': objmacro.c:269:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:268:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MacroActionListAsnRead': objmacro.c:472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:469:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'MacroActionListAsnWrite': objmacro.c:525:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'SuspectRuleSetAsnRead': objmacro.c:586:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:583:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'SuspectRuleSetAsnWrite': objmacro.c:639:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'WordSubstitutionAsnRead': objmacro.c:719:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'WordSubstitutionSetAsnRead': objmacro.c:884:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:881:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'WordSubstitutionSetAsnWrite': objmacro.c:937:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'StringConstraintAsnRead': objmacro.c:1025:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:1024:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'StringConstraintSetAsnRead': objmacro.c:1266:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:1263:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'StringConstraintSetAsnWrite': objmacro.c:1319:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'LocationPosConstraintFree': objmacro.c:1359:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'LocationPosConstraintAsnRead': objmacro.c:1388:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'LocationConstraintAsnRead': objmacro.c:1587:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:1586:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FeatQualLegalValAsnRead': objmacro.c:1800:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:1799:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FeatQualLegalValChoiceFree': objmacro.c:1927:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FeatQualLegalValChoiceAsnRead': objmacro.c:1959:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FeatQualLegalSetAsnRead': objmacro.c:2111:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:2108:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'FeatQualLegalSetAsnWrite': objmacro.c:2164:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'FeatQualChoiceFree': objmacro.c:2204:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FeatQualChoiceAsnRead': objmacro.c:2236:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FeatureFieldAsnRead': objmacro.c:2415:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:2414:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FeatureFieldLegalAsnRead': objmacro.c:2579:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:2578:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FeatureFieldPairAsnRead': objmacro.c:2742:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:2741:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RnaFeatTypeFree': objmacro.c:2882:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'RnaFeatTypeAsnRead': objmacro.c:2914:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RnaQualAsnRead': objmacro.c:3162:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:3161:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RnaQualPairAsnRead': objmacro.c:3327:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:3326:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SourceQualPairAsnRead': objmacro.c:3500:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:3499:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SourceQualChoiceFree': objmacro.c:3625:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'SourceQualChoiceAsnRead': objmacro.c:3654:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SourceQualTextValAsnRead': objmacro.c:3869:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:3868:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SourceQualValChoiceFree': objmacro.c:3996:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'SourceQualValChoiceAsnRead': objmacro.c:4028:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SourceQualValSetAsnRead': objmacro.c:4224:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:4221:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'SourceQualValSetAsnWrite': objmacro.c:4277:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'CDSGeneProtFieldPairAsnRead': objmacro.c:4353:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:4352:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoFieldFree': objmacro.c:4478:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'MolinfoFieldAsnRead': objmacro.c:4507:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoMoleculePairAsnRead': objmacro.c:4732:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:4731:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoTechniquePairAsnRead': objmacro.c:4893:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:4892:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoCompletednessPairAsnRead': objmacro.c:5054:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:5053:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoMolClassPairAsnRead': objmacro.c:5215:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:5214:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoTopologyPairAsnRead': objmacro.c:5376:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:5375:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoStrandPairAsnRead': objmacro.c:5537:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:5536:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoFieldPairFree': objmacro.c:5662:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'MolinfoFieldPairAsnRead': objmacro.c:5709:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoFieldListAsnRead': objmacro.c:5901:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:5898:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'MolinfoFieldListAsnWrite': objmacro.c:5954:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'MolinfoFieldConstraintAsnRead': objmacro.c:6032:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:6031:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'StructuredCommentFieldFree': objmacro.c:6160:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'StructuredCommentFieldAsnRead': objmacro.c:6192:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'StructuredCommentFieldPairAsnRead': objmacro.c:6386:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:6385:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'StructuredCommentFieldPairAsnWrite': objmacro.c:6461:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'DBLinkFieldPairAsnRead': objmacro.c:6553:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:6552:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'PubFieldConstraintAsnRead': objmacro.c:6715:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:6714:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'PubFieldSpecialConstraintTypeFree': objmacro.c:6843:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'PubFieldSpecialConstraintTypeAsnRead': objmacro.c:6872:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'PubFieldSpecialConstraintAsnRead': objmacro.c:7087:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:7086:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'PublicationConstraintAsnRead': objmacro.c:7253:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:7252:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SourceConstraintAsnRead': objmacro.c:7432:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:7431:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'CDSGeneProtPseudoConstraintAsnRead': objmacro.c:7621:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:7620:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'CDSGeneProtConstraintFieldFree': objmacro.c:7746:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'CDSGeneProtConstraintFieldAsnRead': objmacro.c:7775:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'CDSGeneProtQualConstraintAsnRead': objmacro.c:7948:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:7947:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'CDSGeneProtQualConstraintAsnWrite': objmacro.c:8030:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'FieldConstraintAsnRead': objmacro.c:8129:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:8128:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FieldConstraintAsnWrite': objmacro.c:8204:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'FieldTypeFree': objmacro.c:8260:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FieldTypeAsnRead': objmacro.c:8304:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SequenceConstraintMolTypeConstraintFree': objmacro.c:8511:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'SequenceConstraintMolTypeConstraintAsnRead': objmacro.c:8540:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'QuantityConstraintFree': objmacro.c:8718:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'QuantityConstraintAsnRead': objmacro.c:8747:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SequenceConstraintAsnRead': objmacro.c:8944:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:8943:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'TranslationConstraintAsnRead': objmacro.c:9157:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:9156:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ConstraintChoiceFree': objmacro.c:9309:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ConstraintChoiceAsnRead': objmacro.c:9371:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ConstraintChoiceSetAsnRead': objmacro.c:9603:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:9600:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'ConstraintChoiceSetAsnWrite': objmacro.c:9656:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'TextMarkerFree': objmacro.c:9696:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'TextMarkerAsnRead': objmacro.c:9728:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'TextPortionAsnRead': objmacro.c:9924:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:9923:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FieldEditAsnRead': objmacro.c:10140:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:10139:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FieldPairTypeFree': objmacro.c:10287:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FieldPairTypeAsnRead': objmacro.c:10337:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ApplyActionAsnRead': objmacro.c:10554:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:10553:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'EditActionAsnRead': objmacro.c:10731:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:10730:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'EditActionAsnWrite': objmacro.c:10806:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'TextTransformFree': objmacro.c:10862:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'TextTransformAsnRead': objmacro.c:10897:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'TextTransformSetAsnRead': objmacro.c:11068:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:11065:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'TextTransformSetAsnWrite': objmacro.c:11121:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'ConvertActionAsnRead': objmacro.c:11201:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:11200:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'CopyActionAsnRead': objmacro.c:11393:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:11392:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SwapActionAsnRead': objmacro.c:11559:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:11558:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SwapActionAsnWrite': objmacro.c:11634:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'AECRParseActionAsnRead': objmacro.c:11732:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:11731:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveActionAsnRead': objmacro.c:11948:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:11947:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveActionAsnWrite': objmacro.c:12016:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'ActionChoiceFree': objmacro.c:12067:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ActionChoiceAsnRead': objmacro.c:12117:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseSrcOrgChoiceFree': objmacro.c:12296:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ParseSrcOrgChoiceAsnRead': objmacro.c:12325:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseSrcOrgAsnRead': objmacro.c:12508:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:12507:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseSrcGeneralIdFree': objmacro.c:12636:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ParseSrcGeneralIdAsnRead': objmacro.c:12668:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseSrcFree': objmacro.c:12824:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ParseSrcAsnRead': objmacro.c:12862:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseDstOrgAsnRead': objmacro.c:13116:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:13115:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ParseDestFree': objmacro.c:13244:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ParseDestAsnRead': objmacro.c:13282:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'LocationIntervalAsnRead': objmacro.c:13490:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:13489:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'LocationChoiceFree': objmacro.c:13615:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'LocationChoiceAsnRead': objmacro.c:13647:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SequenceListAsnRead': objmacro.c:13821:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:13818:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'SequenceListAsnWrite': objmacro.c:13874:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'SequenceListChoiceFree': objmacro.c:13914:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'SequenceListChoiceAsnRead': objmacro.c:13946:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ApplyFeatureActionAsnRead': objmacro.c:14135:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:14134:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveFeatureActionAsnRead': objmacro.c:14399:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:14398:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ConvertFromCDSOptionsAsnRead': objmacro.c:14563:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:14562:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ConvertFeatureSrcOptionsFree': objmacro.c:14697:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ConvertFeatureSrcOptionsAsnRead': objmacro.c:14729:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RegionTypeAsnRead': objmacro.c:14896:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:14895:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ConvertFeatureDstOptionsFree': objmacro.c:15012:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ConvertFeatureDstOptionsAsnRead': objmacro.c:15047:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ConvertFeatureActionAsnRead': objmacro.c:15261:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:15260:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'EditLocationStrandAsnRead': objmacro.c:15467:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:15466:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'Partial5SetActionAsnRead': objmacro.c:15628:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:15627:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'Partial3SetActionAsnRead': objmacro.c:15789:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:15788:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'PartialBothSetActionAsnRead': objmacro.c:15950:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:15949:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'LocationEditTypeFree': objmacro.c:16075:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'LocationEditTypeAsnRead': objmacro.c:16116:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'EditFeatureLocationActionAsnRead': objmacro.c:16375:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:16374:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoBlockAsnRead': objmacro.c:16563:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:16562:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MolinfoBlockAsnWrite': objmacro.c:16645:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'RemoveDescriptorActionAsnRead': objmacro.c:16743:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:16742:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'AutodefActionAsnRead': objmacro.c:16908:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FixPubCapsActionAsnRead': objmacro.c:17070:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:17069:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SortFieldsActionAsnRead': objmacro.c:17272:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:17271:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FixCapsActionFree': objmacro.c:17412:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FixCapsActionAsnRead': objmacro.c:17444:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'FixFormatActionFree': objmacro.c:17608:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'FixFormatActionAsnRead': objmacro.c:17637:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveDuplicateFeatureActionAsnRead': objmacro.c:17841:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:17840:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'GeneXrefTypeAsnRead': objmacro.c:18032:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:18031:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'XrefTypeFree': objmacro.c:18166:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'XrefTypeAsnRead': objmacro.c:18198:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveXrefsActionAsnRead': objmacro.c:18367:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:18366:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'RemoveXrefsActionAsnWrite': objmacro.c:18442:12: warning: unused variable 'av' [-Wunused-variable] objmacro.c: In function 'MakeGeneXrefActionAsnRead': objmacro.c:18535:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:18534:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'AuthorFixActionAsnRead': objmacro.c:18700:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:18699:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MacroActionChoiceFree': objmacro.c:18828:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'MacroActionChoiceAsnRead': objmacro.c:18908:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SearchFuncFree': objmacro.c:19277:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'SearchFuncAsnRead': objmacro.c:19315:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SimpleReplaceAsnRead': objmacro.c:19584:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:19583:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ReplaceFuncFree': objmacro.c:19720:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmacro.c: In function 'ReplaceFuncAsnRead': objmacro.c:19755:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'ReplaceRuleAsnRead': objmacro.c:19935:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:19934:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'SuspectRuleAsnRead': objmacro.c:20104:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmacro.c:20103:12: warning: unused variable 'isError' [-Wunused-variable] objmacro.c: In function 'MacroActionChoiceAsnRead': objmacro.c:19084:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'FixFormatActionAsnRead': objmacro.c:17703:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'FixCapsActionAsnRead': objmacro.c:17507:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ParseSrcGeneralIdAsnRead': objmacro.c:12727:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ConstraintChoiceAsnRead': objmacro.c:9453:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'FieldTypeAsnRead': objmacro.c:8390:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'StructuredCommentFieldAsnRead': objmacro.c:6251:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'MolinfoFieldPairAsnRead': objmacro.c:5771:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'MolinfoFieldAsnRead': objmacro.c:4587:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'SourceQualValChoiceAsnRead': objmacro.c:4098:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'SourceQualChoiceAsnRead': objmacro.c:3727:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'LocationPosConstraintAsnRead': objmacro.c:1447:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'RnaFeatTypeAsnRead': objmacro.c:3008:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'PubFieldSpecialConstraintTypeAsnRead': objmacro.c:6945:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'SequenceConstraintMolTypeConstraintAsnRead': objmacro.c:8613:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'QuantityConstraintAsnRead': objmacro.c:8806:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'TextMarkerAsnRead': objmacro.c:9787:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'FieldPairTypeAsnRead': objmacro.c:10403:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ActionChoiceAsnRead': objmacro.c:12183:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ParseSrcOrgChoiceAsnRead': objmacro.c:12377:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ParseSrcAsnRead': objmacro.c:12957:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ParseDestAsnRead': objmacro.c:13349:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'LocationChoiceAsnRead': objmacro.c:13703:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'ConvertFeatureDstOptionsAsnRead': objmacro.c:15117:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'LocationEditTypeAsnRead': objmacro.c:16212:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmacro.c: In function 'SearchFuncAsnRead': objmacro.c:19420:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objent2.c objent2.c: In function 'Entrez2IdListAsnRead': objent2.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:86:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2BooleanExpAsnRead': objent2.c:276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2BooleanElementFree': objent2.c:414:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2BooleanElementAsnRead': objent2.c:455:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2LimitsAsnRead': objent2.c:664:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:663:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2BooleanTermAsnRead': objent2.c:841:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:840:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2RequestAsnRead': objent2.c:1037:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:1036:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'E2RequestFree': objent2.c:1198:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objent2.c: In function 'E2RequestAsnRead': objent2.c:1251:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2EvalBooleanAsnRead': objent2.c:1488:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:1487:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2TermQueryAsnRead': objent2.c:1664:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:1663:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2TermPosAsnRead': objent2.c:1842:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:1841:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2HierQueryAsnRead': objent2.c:2028:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:2027:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2GetLinksAsnRead': objent2.c:2215:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:2214:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2IdAsnRead': objent2.c:2409:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:2408:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2DtFilterAsnRead': objent2.c:2573:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:2572:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2ReplyAsnRead': objent2.c:2750:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:2749:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'E2ReplyFree': objent2.c:2922:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objent2.c: In function 'E2ReplyAsnRead': objent2.c:2978:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2InfoAsnRead': objent2.c:3224:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2BooleanReplyAsnRead': objent2.c:3395:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:3394:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2DocsumListAsnRead': objent2.c:3572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2TermListAsnRead': objent2.c:3733:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2HierNodeAsnRead': objent2.c:3905:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2LinkSetAsnRead': objent2.c:4104:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:4103:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2LinkCountListAsnRead': objent2.c:4280:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2DbInfoAsnRead': objent2.c:4446:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2FieldInfoAsnRead': objent2.c:4685:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:4684:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2LinkInfoAsnRead': objent2.c:4928:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:4927:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2DocsumFieldInfoAsnRead': objent2.c:5126:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:5125:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2DocsumAsnRead': objent2.c:5301:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c: In function 'Entrez2DocsumDataAsnRead': objent2.c:5463:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:5462:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2TermAsnRead': objent2.c:5629:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:5628:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2LinkCountAsnRead': objent2.c:5811:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objent2.c:5810:12: warning: unused variable 'isError' [-Wunused-variable] objent2.c: In function 'Entrez2BooleanElementAsnRead': objent2.c:522:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objent2.c: In function 'E2ReplyAsnRead': objent2.c:3062:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ent2api.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF pmfapi.c pmfapi.c: In function 'PubMedSynchronousQuery': pmfapi.c:1155:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'PubSeqSynchronousQuery': pmfapi.c:1303:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'PubSeqSynchronousQueryTI': pmfapi.c:1390:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'PubSeqSynchronousQuerySRA': pmfapi.c:1475:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'GiRevHistSynchronousQuery': pmfapi.c:1552:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'GiAccVerSynchronousQuery': pmfapi.c:1604:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'AccnRevHistSynchronousQuery': pmfapi.c:1655:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'GiSeqIdSetSynchronousQuery': pmfapi.c:1706:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] pmfapi.c: In function 'AccnListSynchronousQuery': pmfapi.c:1756:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objtax3.c objtax3.c: In function 'Taxon3RequestAsnRead': objtax3.c:86:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'T3RequestFree': objtax3.c:200:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'SequenceOfIntAsnRead': objtax3.c:418:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'Taxon3ReplyAsnRead': objtax3.c:547:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'T3ReplyFree': objtax3.c:661:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'T3ErrorAsnRead': objtax3.c:872:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'T3DataAsnRead': objtax3.c:1071:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'Value_valueFree': objtax3.c:1252:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'T3StatusFlagsAsnRead': objtax3.c:1282:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: In function 'T3RefreshFlagsAsnRead': objtax3.c:1606:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax3.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] objtax3.c: In function 'T3ReplyAsnRead': objtax3.c:741:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objtax3.c: In function 'T3RequestAsnRead': objtax3.c:297:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objtax3.c: In function 'T3StatusFlagsAsnRead': objtax3.c:1420:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objtax3.c:1361:10: note: 'choice' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF tax3api.c tax3api.c: In function 'Tax3SynchronousQuery': tax3api.c:188:27: warning: variable 't3' set but not used [-Wunused-but-set-variable] tax3api.c: In function 'CheckSuggestedFixes': tax3api.c:753:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable] tax3api.c: In function 'TryNewSuggestedFixes': tax3api.c:865:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable] tax3api.c: In function 'GetSuggestedNamesFromRank': tax3api.c:1114:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable] tax3api.c: At top level: tax3api.c:297:13: warning: 'SaveTaxon3Request' defined but not used [-Wunused-function] tax3api.c:361:16: warning: 'HasMisspellingFlag' defined but not used [-Wunused-function] tax3api.c:616:28: warning: 'TaxFixItemOrigIsOk' defined but not used [-Wunused-function] tax3api.c:1886:16: warning: 'EndsWithSp' defined but not used [-Wunused-function] tax3api.c:2345:16: warning: 'StringIsExactMatchForOrgRef' defined but not used [-Wunused-function] tax3api.c:3003:13: warning: 'AddBioSourcesToChecklist' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objegkludge.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objentgene.c objentgene.c: In function 'EntrezgeneAsnRead': objentgene.c:103:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c: In function 'EntrezgeneSetAsnRead': objentgene.c:411:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c:408:12: warning: unused variable 'av' [-Wunused-variable] objentgene.c: In function 'EntrezgeneSetAsnWrite': objentgene.c:464:12: warning: unused variable 'av' [-Wunused-variable] objentgene.c: In function 'GeneTrackAsnRead': objentgene.c:545:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c: In function 'GeneCommentaryAsnRead': objentgene.c:764:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c: In function 'Method_methodFree': objentgene.c:1056:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objentgene.c: In function 'MapsAsnRead': objentgene.c:1087:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c:1086:12: warning: unused variable 'isError' [-Wunused-variable] objentgene.c: In function 'Method_methodAsnRead': objentgene.c:1167:12: warning: unused variable 'isError' [-Wunused-variable] objentgene.c: In function 'GeneSourceAsnRead': objentgene.c:1408:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c:1407:12: warning: unused variable 'isError' [-Wunused-variable] objentgene.c: In function 'XtraTermsAsnRead': objentgene.c:1622:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c:1621:12: warning: unused variable 'isError' [-Wunused-variable] objentgene.c: In function 'OtherSourceAsnRead': objentgene.c:1792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentgene.c:1791:12: warning: unused variable 'isError' [-Wunused-variable] objentgene.c: In function 'MapsAsnRead': objentgene.c:1219:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objentgene.c:1166:10: note: 'choice' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objmla2.c objmla2.c: In function 'Mla2RequestFree': objmla2.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmla2.c: In function 'Mla22RequestAsnRead': objmla2.c:96:12: warning: unused variable 'isError' [-Wunused-variable] objmla2.c: In function 'TitleMsg2AsnRead': objmla2.c:447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmla2.c:446:12: warning: unused variable 'isError' [-Wunused-variable] objmla2.c: In function 'TitleMsgList2AsnRead': objmla2.c:612:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmla2.c: In function 'Mla22RequestAsnRead': objmla2.c:249:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmla2.c: In function 'Mla2BackAsnRead': objmla2.c:902:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF mla2api.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF qblastapi.c qblastapi.c: In function 'SecondQBlastCallback': qblastapi.c:259:15: warning: variable 'waiting' set but not used [-Wunused-but-set-variable] qblastapi.c: In function 'BLASTGetSeqAnnotByRIDEx': qblastapi.c:823:18: warning: variable 'status' set but not used [-Wunused-but-set-variable] qblastapi.c: In function 'BLASTGetQueryBioseqByRIDEx': qblastapi.c:868:18: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF vecscnapi.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objmim.c objmim.c: In function 'MimSetAsnRead': objmim.c:86:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c: In function 'MimDateAsnRead': objmim.c:248:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:247:12: warning: unused variable 'isError' [-Wunused-variable] objmim.c: In function 'MimEntryAsnRead': objmim.c:447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c: In function 'MimCitAsnRead': objmim.c:907:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:906:12: warning: unused variable 'isError' [-Wunused-variable] objmim.c: In function 'MimTextAsnRead': objmim.c:1093:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:1092:12: warning: unused variable 'isError' [-Wunused-variable] objmim.c: In function 'MimEditItemAsnRead': objmim.c:1272:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:1271:12: warning: unused variable 'isError' [-Wunused-variable] objmim.c: In function 'MimAllelicVariantAsnRead': objmim.c:1443:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c: In function 'MimIndexTermAsnRead': objmim.c:1634:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c: In function 'MimReferenceAsnRead': objmim.c:1812:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c: In function 'MimLinkAsnRead': objmim.c:2187:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:2186:12: warning: unused variable 'isError' [-Wunused-variable] objmim.c: In function 'MimAuthorAsnRead': objmim.c:2360:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:2359:12: warning: unused variable 'isError' [-Wunused-variable] objmim.c: In function 'MimPageAsnRead': objmim.c:2525:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmim.c:2524:12: warning: unused variable 'isError' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objvalid.c objvalid.c: In function 'FieldRuleAsnRead': objvalid.c:88:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objvalid.c:87:12: warning: unused variable 'isError' [-Wunused-variable] objvalid.c: In function 'FieldSetAsnRead': objvalid.c:256:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objvalid.c:253:12: warning: unused variable 'av' [-Wunused-variable] objvalid.c: In function 'FieldSetAsnWrite': objvalid.c:309:12: warning: unused variable 'av' [-Wunused-variable] objvalid.c: In function 'DependentFieldRuleAsnRead': objvalid.c:389:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objvalid.c:388:12: warning: unused variable 'isError' [-Wunused-variable] objvalid.c: In function 'DependentFieldSetAsnRead': objvalid.c:563:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objvalid.c:560:12: warning: unused variable 'av' [-Wunused-variable] objvalid.c: In function 'DependentFieldSetAsnWrite': objvalid.c:616:12: warning: unused variable 'av' [-Wunused-variable] objvalid.c: In function 'CommentRuleAsnRead': objvalid.c:698:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objvalid.c:697:12: warning: unused variable 'isError' [-Wunused-variable] objvalid.c: In function 'CommentSetAsnRead': objvalid.c:888:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objvalid.c:885:12: warning: unused variable 'av' [-Wunused-variable] objvalid.c: In function 'CommentSetAsnWrite': objvalid.c:941:12: warning: unused variable 'av' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF mimapi.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF cddapi.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF seqport.c seqport.c: In function 'productLoc_to_locationLoc': seqport.c:4153:13: warning: variable 'is_cdregion' set but not used [-Wunused-but-set-variable] seqport.c: In function 'NaLocFromNaInterval': seqport.c:4483:8: warning: variable 'p_end_pos' set but not used [-Wunused-but-set-variable] seqport.c: In function 'dnaLoc_to_aaLoc': seqport.c:4599:18: warning: variable 'cds_right' set but not used [-Wunused-but-set-variable] seqport.c:4599:8: warning: variable 'cds_left' set but not used [-Wunused-but-set-variable] seqport.c: In function 'DeltaRevComp': seqport.c:5281:21: warning: variable 'dspnext' set but not used [-Wunused-but-set-variable] seqport.c: In function 'SeqSearchEnterNucWord': seqport.c:6822:18: warning: variable 'patLen' set but not used [-Wunused-but-set-variable] seqport.c: In function 'ProtSearchEnterProtWord': seqport.c:7696:18: warning: variable 'patLen' set but not used [-Wunused-but-set-variable] seqport.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF sequtil.c sequtil.c: In function 'GetPointsForLeftAndRightOffsets': sequtil.c:7837:11: warning: variable 'first_strand' set but not used [-Wunused-but-set-variable] sequtil.c: In function 'SeqPointWriteEx': sequtil.c:8364:15: warning: variable 'fuzzlen' set but not used [-Wunused-but-set-variable] sequtil.c: In function 'TaxNameFromCommon': sequtil.c:8520:5: warning: missing braces around initializer [-Wmissing-braces] sequtil.c:8520:5: warning: (near initialization for 'taxcommon[0]') [-Wmissing-braces] sequtil.c: In function 'GetBestScoreAndEvalueFromScorePtr': sequtil.c:9342:48: warning: variable 'sum_set' set but not used [-Wunused-but-set-variable] sequtil.c: In function 'SeqIdFromAccessionEx': sequtil.c:9942:38: warning: variable 'sip2' set but not used [-Wunused-but-set-variable] sequtil.c: In function 'BSCompressDNAOld': sequtil.c:1521:15: warning: 'byte_from' may be used uninitialized in this function [-Wuninitialized] sequtil.c: In function 'GenericCompressDNAEx': sequtil.c:1328:15: warning: 'byte_from' may be used uninitialized in this function [-Wuninitialized] sequtil.c: In function 'BSConvertSeq': sequtil.c:924:15: warning: 'byte_from' may be used uninitialized in this function [-Wuninitialized] sequtil.c: In function 'SeqLocCoverage': sequtil.c:6800:23: warning: 'sip' may be used uninitialized in this function [-Wuninitialized] sequtil.c: In function 'GetThePointForOffsetEx': sequtil.c:7797:14: warning: 'last_strand' may be used uninitialized in this function [-Wuninitialized] sequtil.c:7778:14: warning: 'first_strand' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF prtutil.c prtutil.c: In function 'StdFormatPrint': prtutil.c:1422:10: warning: unused variable 'ptr' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF simple.c In file included from simple.c:69:0: ../include/all.h:7035:0: warning: "RNA_QUAL" redefined [enabled by default] ../include/all.h:5608:0: note: this is the location of the previous definition simple.c: In function 'SimpleSeqAsnRead': simple.c:212:15: warning: 'b' may be used uninitialized in this function [-Wuninitialized] simple.c:170:17: note: 'b' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF tofasta.c tofasta.c: In function 'DoSpecialDefline': tofasta.c:1244:22: warning: variable 'gene' set but not used [-Wunused-but-set-variable] tofasta.c: At top level: tofasta.c:2786:16: warning: 'get_descr_on_top' defined but not used [-Wunused-function] tofasta.c:2815:16: warning: 'get_descr' defined but not used [-Wunused-function] tofasta.c:2910:19: warning: 'IndexedGatherDescrOnBioseq' defined but not used [-Wunused-function] tofasta.c:3073:19: warning: 'GetCDSProtUnindexed' defined but not used [-Wunused-function] tofasta.c:3159:19: warning: 'GatherSeqFeatProt' defined but not used [-Wunused-function] tofasta.c:3193:19: warning: 'GatherGenesForCDS' defined but not used [-Wunused-function] tofasta.c: In function 'FastaToSeqEntryInternalExEx': tofasta.c:2450:14: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tofasta.c:2475:18: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tofasta.c: In function 'FastaReadSequenceInternalEx': tofasta.c:2190:43: warning: 'mask_to' may be used uninitialized in this function [-Wuninitialized] tofasta.c: In function 'FastaToSeqEntryInternalExEx': tofasta.c:2566:19: warning: 'fd' may be used uninitialized in this function [-Wuninitialized] tofasta.c:2478:29: warning: 'firstchar' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF tofile.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF tomedlin.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF valid.c valid.c: In function 'Valid1GatherProc': valid.c:1998:22: warning: variable 'sc_valid' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateSeqIdCase': valid.c:3077:21: warning: variable 'gcp' set but not used [-Wunused-but-set-variable] valid.c: In function 'CountAdjacentProc': valid.c:5778:21: warning: variable 'gcp' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateBioseqInst': valid.c:6164:19: warning: variable 'tech' set but not used [-Wunused-but-set-variable] valid.c:6108:19: warning: variable 'prot' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateBioSource': valid.c:13070:19: warning: variable 'id' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateSeqDescrCommon': valid.c:14010:19: warning: variable 'pdp' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateBioseqContextIndexed': valid.c:16950:3: warning: suggest parentheses around '&&' within '||' [-Wparentheses] valid.c:16334:47: warning: variable 'utr3gene' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateBarcodeIndexNumber': valid.c:17823:21: warning: variable 'bin_len' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateBioseqContext': valid.c:17931:19: warning: variable 'taxname' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateRptUnit': valid.c:18964:32: warning: variable 'found' set but not used [-Wunused-but-set-variable] valid.c: In function 'CheckForCommonCDSProduct': valid.c:20771:19: warning: variable 'is_nw' set but not used [-Wunused-but-set-variable] valid.c:20768:19: warning: variable 'is_nc' set but not used [-Wunused-but-set-variable] valid.c: In function 'CheckForIllegalDbxref': valid.c:21144:16: warning: variable 'id' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateAnticodon': valid.c:21825:53: warning: variable 'circular' set but not used [-Wunused-but-set-variable] valid.c:21824:19: warning: variable 'retval' set but not used [-Wunused-but-set-variable] valid.c: In function 'IsGeneXrefRedundant': valid.c:23062:17: warning: variable 'count' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateSeqFeat': valid.c:23198:19: warning: variable 'count' set but not used [-Wunused-but-set-variable] valid.c:23176:19: warning: variable 'pdp' set but not used [-Wunused-but-set-variable] valid.c: In function 'SpliceCheckEx': valid.c:25816:19: warning: variable 'sep' set but not used [-Wunused-but-set-variable] valid.c: In function 'ValidateSeqLoc': valid.c:26241:19: warning: variable 'retval' set but not used [-Wunused-but-set-variable] valid.c:26240:24: warning: variable 'prev' set but not used [-Wunused-but-set-variable] valid.c: At top level: valid.c:1392:16: warning: 'IsNotUnclassifiedExcept' defined but not used [-Wunused-function] valid.c:3756:13: warning: 'FindLongIdsThatCollideWhenTruncated' defined but not used [-Wunused-function] valid.c:5072:13: warning: 'CheckMutSetSources' defined but not used [-Wunused-function] valid.c:6035:13: warning: 'ReportLongSeqId' defined but not used [-Wunused-function] valid.c:11552:16: warning: 'LatLonIsValid' defined but not used [-Wunused-function] valid.c:12349:16: warning: 'LatLonInRange' defined but not used [-Wunused-function] valid.c:12446:16: warning: 'CountryIsClosestToLatLon' defined but not used [-Wunused-function] valid.c:17466:19: warning: 'ListFeaturesContainedInLocation' defined but not used [-Wunused-function] valid.c:17516:28: warning: 'MultiGeneOverlapFree' defined but not used [-Wunused-function] valid.c:22750:16: warning: 'CouldExtendPartial' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF valapi.c valapi.c: In function 'DoesStringMatchExpression': valapi.c:330:15: warning: variable 'errstr' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF alignmgr.c alignmgr.c: In function 'AlnMgrIndexParentSA': alignmgr.c:1603:19: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] alignmgr.c: In function 'AlnMgrGetNthBlockRange': alignmgr.c:4180:21: warning: variable 'amaip' set but not used [-Wunused-but-set-variable] alignmgr.c: In function 'AlnMgrMakeFakeMultipleEx': alignmgr.c:5155:21: warning: variable 'nogap' set but not used [-Wunused-but-set-variable] alignmgr.c: In function 'AlnMgrMapBioseqToBioseq': alignmgr.c:10838:19: warning: variable 'gap' set but not used [-Wunused-but-set-variable] alignmgr.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] alignmgr.c:5403:13: warning: 'AlnMgrMergeNeighbors' defined but not used [-Wunused-function] alignmgr.c:10570:16: warning: 'am_merge_after_edit' defined but not used [-Wunused-function] alignmgr.c:6121:18: warning: 'AlnMgrConstructOverlaps' defined but not used [-Wunused-function] alignmgr.c:6648:16: warning: 'AlnMgrJaggedIndex' defined but not used [-Wunused-function] alignmgr.c: In function 'AlnMgrUnpackSeqAlign': alignmgr.c:1145:33: warning: 'sap_segs_prev' may be used uninitialized in this function [-Wuninitialized] alignmgr.c: In function 'AlnMgrPropagateSeqIdsBySapList': alignmgr.c:1751:23: warning: 'sip' may be used uninitialized in this function [-Wuninitialized] alignmgr.c: In function 'AlnMgrGetNthSeqRangeInSA': alignmgr.c:4113:19: warning: 'tmp_end' may be used uninitialized in this function [-Wuninitialized] alignmgr.c:4111:20: warning: 'tmp_beg' may be used uninitialized in this function [-Wuninitialized] alignmgr.c: In function 'am_is_consistent': alignmgr.c:10112:43: warning: 'n' may be used uninitialized in this function [-Wuninitialized] alignmgr.c: In function 'AlnMgrGetSubAlign': alignmgr.c:9095:15: warning: 'salp' may be used uninitialized in this function [-Wuninitialized] alignmgr.c: In function 'AlnMgrMakeMultByIntersectOnMaster': alignmgr.c:5827:30: warning: 'sip_tmp' may be used uninitialized in this function [-Wuninitialized] alignmgr.c:5551:17: note: 'sip_tmp' was declared here alignmgr.c:5879:25: warning: 'sip_tmp' may be used uninitialized in this function [-Wuninitialized] alignmgr.c:5844:18: note: 'sip_tmp' was declared here alignmgr.c:5863:11: warning: 'sip_head' may be used uninitialized in this function [-Wuninitialized] alignmgr.c:5843:18: note: 'sip_head' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF aliparse.c aliparse.c: In function 's_IsInterleaved': aliparse.c:930:3: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aliparse.c:823:20: warning: variable 'isMaybe' set but not used [-Wunused-but-set-variable] aliparse.c: In function 's_ProcessInterId': aliparse.c:1000:15: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable] aliparse.c: In function 's_ProcessInterSeq': aliparse.c:1090:15: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable] aliparse.c: In function 's_AnalyzeInterleaved': aliparse.c:1193:8: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aliparse.c: In function 's_ProcessContigId': aliparse.c:1385:18: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable] aliparse.c: In function 's_ProcessContigSeq': aliparse.c:1476:18: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable] aliparse.c: In function 's_AnalyzeContiguous': aliparse.c:1603:8: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aliparse.c: In function 's_CheckContext': aliparse.c:2151:5: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aliparse.c:2131:20: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable] aliparse.c: In function 'PrintOutMultAlign': aliparse.c:3161:10: warning: statement with no effect [-Wunused-value] aliparse.c: In function 'ALI_ConvertToNCBIData': aliparse.c:3227:17: warning: variable 'sdp' set but not used [-Wunused-but-set-variable] aliparse.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] aliparse.c:449:13: warning: 's_FreeRowList' defined but not used [-Wunused-function] aliparse.c:57:18: warning: 's_SegCompare' declared 'static' but never defined [-Wunused-function] aliparse.c:3130:13: warning: 'PrintOutMultAlign' defined but not used [-Wunused-function] aliparse.c:3186:13: warning: 'PrintOutSegs' defined but not used [-Wunused-function] aliparse.c: In function 's_GetRowIdString': aliparse.c:543:20: warning: 'newIdStr' may be used uninitialized in this function [-Wuninitialized] aliparse.c: In function 's_ProcessMaybes': aliparse.c:696:21: warning: 'lastSeqPart' may be used uninitialized in this function [-Wuninitialized] aliparse.c:655:18: warning: 'currentIdStr' may be used uninitialized in this function [-Wuninitialized] aliparse.c: In function 'Ali_Read': aliparse.c:1355:14: warning: 'previousLength' may be used uninitialized in this function [-Wuninitialized] aliparse.c:1154:20: note: 'previousLength' was declared here aliparse.c:930:14: warning: 'seqLinePtr' may be used uninitialized in this function [-Wuninitialized] aliparse.c:820:20: note: 'seqLinePtr' was declared here aliparse.c: In function 'ALI_ConvertToNCBIData': aliparse.c:3276:26: warning: 'sep_new' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF aliread.c ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF alignval.c alignval.c: In function 'ValidateSeqlengthInDenseSeg': alignval.c:1214:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] alignval.c: In function 'PercentStringMatch': alignval.c:1495:32: warning: variable 'max_len' set but not used [-Wunused-but-set-variable] alignval.c: In function 'CheckAlnSeqLens': alignval.c:1893:12: warning: variable 'aln_len' set but not used [-Wunused-but-set-variable] alignval.c: In function 'ValidateSeqAlign': alignval.c:1991:16: warning: variable 'ans' set but not used [-Wunused-but-set-variable] alignval.c: In function 'GetAlignmentColumnPercentIdentities': alignval.c:2371:14: warning: variable 'num_match' set but not used [-Wunused-but-set-variable] alignval.c: In function 'WeightedAlignmentPercentIdentity': alignval.c:2681:14: warning: variable 'num_match' set but not used [-Wunused-but-set-variable] alignval.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] alignval.c:568:13: warning: 'delete_bioseqs' defined but not used [-Wunused-function] alignval.c:1476:16: warning: 'IsSipContainedInStdseg' defined but not used [-Wunused-function] alignval.c:1891:13: warning: 'CheckAlnSeqLens' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF sqnutil1.c sqnutil1.c: In function 'GeneExtendFunc': sqnutil1.c:2304:18: warning: variable 'grp' set but not used [-Wunused-but-set-variable] sqnutil1.c: In function 'ParseAnticodon': sqnutil1.c:3688:14: warning: variable 'strand' set but not used [-Wunused-but-set-variable] sqnutil1.c: In function 'ParseCodeBreak': sqnutil1.c:3808:17: warning: variable 'strand' set but not used [-Wunused-but-set-variable] sqnutil1.c: In function 'CleanOrgModListEx': sqnutil1.c:5924:19: warning: suggest parentheses around '&&' within '||' [-Wparentheses] sqnutil1.c: In function 'CleanUpPubdescAuthors': sqnutil1.c:8857:20: warning: variable 'prev' set but not used [-Wunused-but-set-variable] sqnutil1.c: In function 'RemoveUnnecessaryGeneXrefs': sqnutil1.c:13209:24: warning: variable 'count' set but not used [-Wunused-but-set-variable] sqnutil1.c: In function 'ResynchCDSPartials': sqnutil1.c:13374:9: warning: too many arguments for format [-Wformat-extra-args] sqnutil1.c: In function 'LinkTwoFeatures': sqnutil1.c:17154:25: warning: variable 'prev_xref' set but not used [-Wunused-but-set-variable] sqnutil1.c: In function 'RemoveBadCodonRecognizedCallback': sqnutil1.c:17700:13: warning: variable 'rcodon' set but not used [-Wunused-but-set-variable] sqnutil1.c: At top level: sqnutil1.c:2299:16: warning: 'GeneExtendFunc' defined but not used [-Wunused-function] sqnutil1.c:4992:13: warning: 'CleanupConsSplice' defined but not used [-Wunused-function] sqnutil1.c:7275:16: warning: 'IsStringSingleToken' defined but not used [-Wunused-function] sqnutil1.c:9789:13: warning: 'SortGoTermsSfp' defined but not used [-Wunused-function] sqnutil1.c:9903:16: warning: 'CleanUpSgml' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF sqnutil2.c sqnutil2.c: In function 'FindResidueByName': sqnutil2.c:4946:11: warning: variable 'last' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'ReadFeatureTableEx': sqnutil2.c:6854:18: warning: variable 'isnote' set but not used [-Wunused-but-set-variable] sqnutil2.c:6846:18: warning: variable 'endsinspace' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'SeqEntryCopyReplace': sqnutil2.c:8838:8: warning: variable 'type' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'StreamingReadBioseq': sqnutil2.c:9663:10: warning: variable 'level' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'StreamAsnForDescriptors': sqnutil2.c:9896:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] sqnutil2.c: In function 'StreamingReadWriteSeqSubmit': sqnutil2.c:10276:1: warning: label 'ret' defined but not used [-Wunused-label] sqnutil2.c: In function 'WriteAsnWithReplacedDescriptors': sqnutil2.c:10315:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] sqnutil2.c: In function 'ReadFeatureTableFile': sqnutil2.c:11265:18: warning: variable 'begin' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'ReadFastaOnly': sqnutil2.c:11379:18: warning: variable 'seqid' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'ReadDeltaFastaWithEmptyDefline': sqnutil2.c:11910:29: warning: variable 'seqid' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'IsStringInSpanInList': sqnutil2.c:16839:11: warning: variable 'str_val' set but not used [-Wunused-but-set-variable] sqnutil2.c:16837:27: warning: variable 'suffix_len' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'CreateStructuredCommentsFromFile': sqnutil2.c:18681:35: warning: variable 'vnp_h' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'AlignmentIntervalToString': sqnutil2.c:19045:14: warning: variable 'target_strand' set but not used [-Wunused-but-set-variable] sqnutil2.c:19044:14: warning: variable 'seq_len' set but not used [-Wunused-but-set-variable] sqnutil2.c: In function 'ReportExonLocationChanges': sqnutil2.c:20011:9: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'Nlm_VoidPtr' [-Wformat] sqnutil2.c: In function 'AdjustForConsensusSpliceCallback': sqnutil2.c:20025:33: warning: variable 'partial5_last' set but not used [-Wunused-but-set-variable] sqnutil2.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] sqnutil2.c:4429:16: warning: 'IsNonSeqChar' defined but not used [-Wunused-function] sqnutil2.c:7905:16: warning: 'DoesSeqEntryAccessionMatchList' defined but not used [-Wunused-function] sqnutil2.c:15671:13: warning: 'RevCompFeatsOnBioseq' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF sqnutil3.c sqnutil3.c: In function 'BspLinkCDSmRNAbyOverlap': sqnutil3.c:487:22: warning: variable 'count' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'CautiousSeqEntryCleanup': sqnutil3.c:2226:16: warning: variable 'taxserver' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'ConvertSegSetsToDeltaSequences': sqnutil3.c:3331:17: warning: variable 'bsp' set but not used [-Wunused-but-set-variable] sqnutil3.c:3325:26: warning: variable 'prev_sep' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'MakeSequinDataFromAlignmentEx': sqnutil3.c:5078:32: warning: variable 'num_sets' set but not used [-Wunused-but-set-variable] sqnutil3.c:5072:26: warning: variable 'salp_last' set but not used [-Wunused-but-set-variable] sqnutil3.c:5072:15: warning: variable 'salp_list' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'GetCDSformRNA': sqnutil3.c:16739:8: warning: variable 'count' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'FindTextInFlatfileEx': sqnutil3.c:18470:19: warning: variable 'okay' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'CheckForTitleAuthorConflicts': sqnutil3.c:19556:14: warning: variable 'author_conflict' set but not used [-Wunused-but-set-variable] sqnutil3.c: In function 'SortVnpByBspProjectId': sqnutil3.c:23311:31: warning: the comparison will always evaluate as 'true' for the address of 'vnp2' will never be NULL [-Waddress] sqnutil3.c: In function 'FindSmallGenomeSetProblems': sqnutil3.c:24465:36: warning: unused variable 'item_list' [-Wunused-variable] sqnutil3.c: In function 'GetDiscrepancyItemTextEx': sqnutil3.c:25550:21: warning: variable 'special_flag' set but not used [-Wunused-but-set-variable] sqnutil3.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] sqnutil3.c:7716:19: warning: 'FreePrefixCheckList' defined but not used [-Wunused-function] sqnutil3.c:7767:25: warning: 'InconsistentLocusTagPrefix' defined but not used [-Wunused-function] sqnutil3.c:7850:13: warning: 'GeneLocusTagDiscrepancyCallback' defined but not used [-Wunused-function] sqnutil3.c:8347:13: warning: 'ExtractVnpByStringSearch' defined but not used [-Wunused-function] sqnutil3.c:11103:16: warning: 'ContainsBracketsOrParentheses' defined but not used [-Wunused-function] sqnutil3.c:14198:24: warning: 'IntervalPairFree' defined but not used [-Wunused-function] sqnutil3.c:16258:24: warning: 'SortVnpByHaplotypeThenSequenceAllowNDiff' defined but not used [-Wunused-function] sqnutil3.c:17552:16: warning: 'FeatureCountHasNumFeats' defined but not used [-Wunused-function] sqnutil3.c:21309:13: warning: 'FindSuspectrRNAProductsCallback' defined but not used [-Wunused-function] sqnutil3.c:28435:13: warning: 'FindBadGPS' defined but not used [-Wunused-function] sqnutil3.c:28443:1: warning: 'BarcodeTestForSeqEntry' defined but not used [-Wunused-function] sqnutil3.c:30492:13: warning: 'TestLatLonFormatting' defined but not used [-Wunused-function] sqnutil3.c: In function 'FillInMissingTraces': sqnutil3.c:28963:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] sqnutil3.c: In function 'LinkCDSmRNAbyLabelAndLocationCallback': sqnutil3.c:850:23: warning: 'best_diff' may be used uninitialized in this function [-Wuninitialized] sqnutil3.c: In function 'ValidateInferenceQualifier': sqnutil3.c:5974:6: warning: 'rest' may be used uninitialized in this function [-Wuninitialized] sqnutil3.c:6019:13: warning: 'best' may be used uninitialized in this function [-Wuninitialized] sqnutil3.c: In function 'tRNASameStrandBioseqCallback': sqnutil3.c:13738:8: warning: 'strand' may be used uninitialized in this function [-Wuninitialized] sqnutil3.c: In function 'FindMismatchedComments': sqnutil3.c:22968:47: warning: 'sdp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF sqnutil4.c sqnutil4.c: In function 'ListClauses': sqnutil4.c:8166:43: warning: variable 'twobefore' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'SmashOneTallClause': sqnutil4.c:9470:20: warning: variable 'subclause_featlist' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'GetFeatureClauseForSeg': sqnutil4.c:10342:21: warning: variable 'start' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'ConvertProtToImpFunc': sqnutil4.c:13715:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'ExtraCDSCreationActions': sqnutil4.c:14594:28: warning: variable 'nsep' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'TESTDisplayQualCombo': sqnutil4.c:15703:20: warning: variable 'val' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'ConvertCDSToMatPeptideForOverlappingCDS': sqnutil4.c:17120:15: warning: variable 'crp' set but not used [-Wunused-but-set-variable] sqnutil4.c: In function 'AddNewUniqueAnnotations': sqnutil4.c:17294:39: warning: variable 'sap_tmp_next' set but not used [-Wunused-but-set-variable] sqnutil4.c: At top level: ../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function] sqnutil4.c:4846:13: warning: 'CountFeatures' defined but not used [-Wunused-function] sqnutil4.c:9404:13: warning: 'RemoveFeats' defined but not used [-Wunused-function] sqnutil4.c:9568:13: warning: 'SmashTallClauses' defined but not used [-Wunused-function] sqnutil4.c:9599:19: warning: 'RemoveAllButLastCDS' defined but not used [-Wunused-function] sqnutil4.c:15535:16: warning: 'RemoveFieldFromUniqBioSrcGrpList' defined but not used [-Wunused-function] sqnutil4.c:15823:19: warning: 'ExpandOneComboListUsingAllPresentQuals' defined but not used [-Wunused-function] sqnutil4.c:15852:13: warning: 'TESTDisplayList' defined but not used [-Wunused-function] sqnutil4.c: In function 'ConvertProtToImpFunc': sqnutil4.c:13889:13: warning: 'topOfGbqList' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF subutil.c subutil.c: In function 'AddSeqLitToBioseq': subutil.c:769:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] subutil.c: In function 'AddReferenceToSegmentedEntry': subutil.c:1163:22: warning: variable 'prev' set but not used [-Wunused-but-set-variable] subutil.c: In function 'GetDNAConv': subutil.c:1624:8: warning: array subscript has type 'char' [-Wchar-subscripts] subutil.c: In function 'GetProteinConv': subutil.c:1646:8: warning: array subscript has type 'char' [-Wchar-subscripts] subutil.c: In function 'AddBasesToByteStore': subutil.c:1669:9: warning: array subscript has type 'char' [-Wchar-subscripts] subutil.c: In function 'AddAAsToByteStore': subutil.c:1700:9: warning: array subscript has type 'char' [-Wchar-subscripts] subutil.c: In function 'CitArtBuild': subutil.c:2683:21: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] subutil.c: At top level: subutil.c:3546:20: warning: 'TranslateCdRegionNew' defined but not used [-Wunused-function] subutil.c: In function 'AddGapToSegmentedEntry': subutil.c:1140:27: warning: 'bsp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF edutil.c edutil.c: In function 'SeqLocsToDeltaSeqs': edutil.c:787:14: warning: variable 'sip' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqLocCopyPart': edutil.c:2227:13: warning: variable 'done' set but not used [-Wunused-but-set-variable] edutil.c: In function 'IndexedSeqFeatsCopy': edutil.c:2384:16: warning: variable 'region' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqFeatsCopy': edutil.c:2488:16: warning: variable 'region' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqLocInsert': edutil.c:3670:10: warning: variable 'diff' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqEdRecreateDeletedFeats': edutil.c:4196:19: warning: variable 'sfp' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqEdSeqLocInsert': edutil.c:4496:8: warning: variable 'diff' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqEdSeqLocDelete': edutil.c:5053:10: warning: variable 'diff' set but not used [-Wunused-but-set-variable] edutil.c: In function 'SeqEdInsertAdjustFeat': edutil.c:5284:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] edutil.c: In function 'SeqEdDeleteFromBsp': edutil.c:6469:11: warning: suggest parentheses around '&&' within '||' [-Wparentheses] edutil.c:6532:11: warning: suggest parentheses around '&&' within '||' [-Wparentheses] edutil.c:6421:21: warning: variable 'merge_mode' set but not used [-Wunused-but-set-variable] edutil.c:6412:21: warning: variable 'feats_altered' set but not used [-Wunused-but-set-variable] edutil.c: In function 'BioseqCopyEx': edutil.c:2136:25: warning: 'head' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF asn2ff1.c asn2ff1.c: In function 'asn2ff_print': asn2ff1.c:289:17: warning: unused variable 'dsp' [-Wunused-variable] asn2ff1.c: In function 'Asn2ffJobCreate': asn2ff1.c:351:18: warning: unused variable 'itemID' [-Wunused-variable] asn2ff1.c: In function 'SeqEntryToEntrez': asn2ff1.c:498:15: warning: unused variable 'slp' [-Wunused-variable] asn2ff1.c: In function 'SeqLocToFlat': asn2ff1.c:1518:19: warning: unused variable 'itemID' [-Wunused-variable] asn2ff1.c: In function 'asn2ff_setup': asn2ff1.c:1579:12: warning: variable 'bsp' set but not used [-Wunused-but-set-variable] asn2ff1.c: In function 'PrintStatusLine': asn2ff1.c:2197:15: warning: unused variable 'ptr' [-Wunused-variable] asn2ff1.c: In function 'asn2gb_setup': asn2ff1.c:2403:3: warning: suggest parentheses around '&&' within '||' [-Wparentheses] asn2ff1.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff1.c:816:19: warning: 'SeqEntryToLinkStrEx' defined but not used [-Wunused-function] asn2ff1.c:2171:16: warning: 'find_user_object' defined but not used [-Wunused-function] asn2ff1.c:2189:13: warning: 'PrintStatusLine' defined but not used [-Wunused-function] asn2ff1.c: In function 'asn2gp_setup': asn2ff1.c:2942:4: warning: 'feat_num' may be used uninitialized in this function [-Wuninitialized] asn2ff1.c: In function 'asn2embl_setup': asn2ff1.c:2754:7: warning: 'max' may be used uninitialized in this function [-Wuninitialized] asn2ff1.c: In function 'SeqEntryToGBFlatNoSeq': asn2ff1.c:1292:15: warning: 'rsult' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF asn2ff2.c asn2ff2.c: In function 'GetStrForBankit': asn2ff2.c:510:9: warning: unused variable 'i' [-Wunused-variable] asn2ff2.c: In function 'GetCommentByChoice': asn2ff2.c:761:34: warning: unused variable 'string' [-Wunused-variable] asn2ff2.c: In function 'GP_GetSeqDescrComms': asn2ff2.c:1155:10: warning: unused variable 'got_comment' [-Wunused-variable] asn2ff2.c: At top level: asn2ff2.c:1350:8: warning: return type defaults to 'int' [-Wreturn-type] asn2ff2.c: In function 'GetGibbsqCommentLength': asn2ff2.c:1592:7: warning: unused variable 'gibbsq' [-Wunused-variable] asn2ff2.c: In function 'GatherDescrByChoice': asn2ff2.c:1856:8: warning: variable 'bspID' set but not used [-Wunused-but-set-variable] asn2ff2.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff2.c:224:16: warning: 'has_comment' defined but not used [-Wunused-variable] asn2ff2.c:672:16: warning: 'GetEvidence' defined but not used [-Wunused-function] asn2ff2.c:1182:16: warning: 'GetSPBlock' defined but not used [-Wunused-function] asn2ff2.c: In function 'GetCommentByChoice': asn2ff2.c:821:8: warning: 'is_other' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF asn2ff3.c asn2ff3.c: In function 'PutGeneFirst': asn2ff3.c:1659:26: warning: unused variable 'qual_temp' [-Wunused-variable] asn2ff3.c:1658:10: warning: unused variable 'still_looking' [-Wunused-variable] asn2ff3.c: In function 'mRNAEvidenceComment': asn2ff3.c:1743:9: warning: unused variable 'Locus_id' [-Wunused-variable] asn2ff3.c: In function 'Add_gene_id': asn2ff3.c:3303:2: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'Nlm_VoidPtr' [-Wformat] asn2ff3.c: In function 'Add_trid': asn2ff3.c:3728:4: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] asn2ff3.c:3709:7: warning: unused variable 'gi' [-Wunused-variable] asn2ff3.c: In function 'AddPID': asn2ff3.c:3771:5: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] asn2ff3.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff3.c:3288:13: warning: 'Add_gene_id' defined but not used [-Wunused-function] asn2ff3.c: In function 'GettRNAaa': asn2ff3.c:2204:31: warning: 'seq_code' may be used uninitialized in this function [-Wuninitialized] asn2ff3.c: In function 'Add_dbxref.isra.0': asn2ff3.c:855:14: warning: 'val' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF asn2ff4.c asn2ff4.c: In function 'FlatLocPoint': asn2ff4.c:437:15: warning: variable 'order' set but not used [-Wunused-but-set-variable] asn2ff4.c: In function 'do_FlatLoc': asn2ff4.c:1122:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] asn2ff4.c: At top level: asn2ff4.c:1347:8: warning: return type defaults to 'int' [-Wreturn-type] asn2ff4.c: In function 'CreateImpFeatFromProt': asn2ff4.c:1659:14: warning: variable 'grp' set but not used [-Wunused-but-set-variable] asn2ff4.c: In function 'MatchNAGeneToFeat': asn2ff4.c:2196:17: warning: variable 'nsp' set but not used [-Wunused-but-set-variable] asn2ff4.c: In function 'MatchAAGeneToFeat': asn2ff4.c:2367:18: warning: variable 'nsp' set but not used [-Wunused-but-set-variable] asn2ff4.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff4.c: In function 'CheckNewSfpLoc.isra.0': asn2ff4.c:1767:16: warning: 'slp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF asn2ff5.c asn2ff5.c: In function 'format_cit_sub': asn2ff5.c:1023:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses] asn2ff5.c:926:41: warning: variable 'need_space' set but not used [-Wunused-but-set-variable] asn2ff5.c: In function 'format_thesis': asn2ff5.c:1213:20: warning: variable 'embl_format' set but not used [-Wunused-but-set-variable] asn2ff5.c: In function 'format_book': asn2ff5.c:1296:10: warning: variable 'embl_format' set but not used [-Wunused-but-set-variable] asn2ff5.c: In function 'format_jourarticle': asn2ff5.c:1680:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] asn2ff5.c: In function 'StripParanthesis': asn2ff5.c:2124:12: warning: value computed is not used [-Wunused-value] asn2ff5.c: In function 'PostARefErrMessage': asn2ff5.c:3005:20: warning: variable 'ignore_this' set but not used [-Wunused-but-set-variable] asn2ff5.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff5.c:188:26: warning: 'GetSubmitterName' declared 'static' but never defined [-Wunused-function] asn2ff5.c: In function 'CheckPubs': asn2ff5.c:2772:24: warning: 'status' may be used uninitialized in this function [-Wuninitialized] asn2ff5.c: In function 'FlatJournal': asn2ff5.c:2064:13: warning: 'temp' may be used uninitialized in this function [-Wuninitialized] asn2ff5.c:1946:23: note: 'temp' was declared here asn2ff5.c:1155:11: warning: 'afp' may be used uninitialized in this function [-Wuninitialized] asn2ff5.c:1051:11: note: 'afp' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF asn2ff6.c asn2ff6.c: In function 'AddGBQual': asn2ff6.c:1327:18: warning: variable 'note' set but not used [-Wunused-but-set-variable] asn2ff6.c: In function 'BioseqGetGBDivCodeEx': asn2ff6.c:1700:23: warning: variable 'diff' set but not used [-Wunused-but-set-variable] asn2ff6.c: In function 'GR_PrintPubs': asn2ff6.c:2297:41: warning: unused variable 'stop' [-Wunused-variable] asn2ff6.c:2297:32: warning: unused variable 'start' [-Wunused-variable] asn2ff6.c:2297:13: warning: variable 'pmid' set but not used [-Wunused-but-set-variable] asn2ff6.c:2296:10: warning: unused variable 'descr' [-Wunused-variable] asn2ff6.c: In function 'ValidateLocus': asn2ff6.c:2786:17: warning: variable 'base_locus_max' set but not used [-Wunused-but-set-variable] asn2ff6.c: In function 'ValidateOtherAccession': asn2ff6.c:2886:29: warning: unused variable 'FiveNum' [-Wunused-variable] asn2ff6.c:2886:10: warning: unused variable 'FirstLetter' [-Wunused-variable] asn2ff6.c: In function 'AddExtraAccessions': asn2ff6.c:3498:20: warning: variable 'ncbi' set but not used [-Wunused-but-set-variable] asn2ff6.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff6.c:2883:13: warning: 'ValidateOtherAccession' defined but not used [-Wunused-function] asn2ff6.c: In function 'ValidateLocus': asn2ff6.c:2866:33: warning: 'exp' may be used uninitialized in this function [-Wuninitialized] asn2ff6.c: In function 'MakeBaseLocusAwp': asn2ff6.c:3093:17: warning: 'num_of_digits' may be used uninitialized in this function [-Wuninitialized] asn2ff6.c: In function 'AddExtraAccessions': asn2ff6.c:3570:11: warning: 'si' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF asn2gnb1.c asn2gnb1.c: In function 'IsWholeWordSubstr': asn2gnb1.c:2092:19: warning: variable 'right' set but not used [-Wunused-but-set-variable] asn2gnb1.c: In function 'DoOneSection': asn2gnb1.c:2363:24: warning: variable 'iasp' set but not used [-Wunused-but-set-variable] asn2gnb1.c:2357:24: warning: variable 'bkmask' set but not used [-Wunused-but-set-variable] asn2gnb1.c: In function 'Count2Seg': asn2gnb1.c:3205:18: warning: variable 'to' set but not used [-Wunused-but-set-variable] asn2gnb1.c:3203:18: warning: variable 'parent' set but not used [-Wunused-but-set-variable] asn2gnb1.c: At top level: asn2gnb1.c:3482:3: warning: missing braces around initializer [-Wmissing-braces] asn2gnb1.c:3482:3: warning: (near initialization for 'flagTable[0].flags') [-Wmissing-braces] asn2gnb1.c: In function 'SeqIdWriteForTable': asn2gnb1.c:5380:13: warning: variable 'pdb' set but not used [-Wunused-but-set-variable] asn2gnb1.c:5379:40: warning: variable 'patent' set but not used [-Wunused-but-set-variable] asn2gnb1.c: In function 'DoImmediateFormat': asn2gnb1.c:6438:19: warning: comparison between 'enum ' and 'enum ' [-Wenum-compare] asn2gnb1.c:6417:20: warning: variable 'is_www' set but not used [-Wunused-but-set-variable] asn2gnb1.c: In function 'asn2gnbk_format': asn2gnb1.c:6559:19: warning: comparison between 'enum ' and 'enum ' [-Wenum-compare] asn2gnb1.c: In function 'asn2gnbk_cleanup': asn2gnb1.c:6605:21: warning: variable 'iasp' set but not used [-Wunused-but-set-variable] asn2gnb1.c: In function 'SeqEntryToGnbk': asn2gnb1.c:6791:22: warning: variable 'userdata' set but not used [-Wunused-but-set-variable] asn2gnb1.c:6786:22: warning: variable 'gbseq' set but not used [-Wunused-but-set-variable] asn2gnb1.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF asn2gnb2.c asn2gnb2.c: In function 's_LocusAddSuffix': asn2gnb2.c:200:11: warning: variable 'ch' set but not used [-Wunused-but-set-variable] asn2gnb2.c: In function 'AddLocusBlock': asn2gnb2.c:1284:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] asn2gnb2.c: In function 'AddDblinkBlock': asn2gnb2.c:2550:22: warning: variable 'parentID' set but not used [-Wunused-but-set-variable] asn2gnb2.c: In function 'GetRefsOnBioseq': asn2gnb2.c:5205:22: warning: variable 'strand' set but not used [-Wunused-but-set-variable] asn2gnb2.c:5202:22: warning: variable 'split' set but not used [-Wunused-but-set-variable] asn2gnb2.c:5196:22: warning: variable 'right' set but not used [-Wunused-but-set-variable] asn2gnb2.c:5190:22: warning: variable 'left' set but not used [-Wunused-but-set-variable] asn2gnb2.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF asn2gnb3.c asn2gnb3.c: In function 'GetStatusForRefTrack': asn2gnb3.c:503:22: warning: variable 'urf' set but not used [-Wunused-but-set-variable] asn2gnb3.c: In function 'GetSourcesOnBioseq': asn2gnb3.c:3861:22: warning: variable 'strand' set but not used [-Wunused-but-set-variable] asn2gnb3.c:3859:22: warning: variable 'start' set but not used [-Wunused-but-set-variable] asn2gnb3.c:3858:22: warning: variable 'split' set but not used [-Wunused-but-set-variable] asn2gnb3.c: In function 'GetFeatsOnCdsProduct': asn2gnb3.c:4717:22: warning: variable 'isRefSeq' set but not used [-Wunused-but-set-variable] asn2gnb3.c: In function 'GetRemoteFeatsOnCdsProduct': asn2gnb3.c:4865:20: warning: variable 'lastsfp' set but not used [-Wunused-but-set-variable] asn2gnb3.c:4864:20: warning: variable 'lastsap' set but not used [-Wunused-but-set-variable] asn2gnb3.c:4863:20: warning: variable 'lastright' set but not used [-Wunused-but-set-variable] asn2gnb3.c:4862:20: warning: variable 'lastleft' set but not used [-Wunused-but-set-variable] asn2gnb3.c:4861:20: warning: variable 'isRefSeq' set but not used [-Wunused-but-set-variable] asn2gnb3.c: In function 'GetFeatsOnBioseq': asn2gnb3.c:5086:22: warning: variable 'start' set but not used [-Wunused-but-set-variable] asn2gnb3.c:5059:22: warning: variable 'icp' set but not used [-Wunused-but-set-variable] asn2gnb3.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF asn2gnb4.c asn2gnb4.c: In function 'FormatFeatureBlockQuals': asn2gnb4.c:3630:50: warning: "/*" within comment [-Wcomment] asn2gnb4.c:3008:24: warning: variable 'split' set but not used [-Wunused-but-set-variable] asn2gnb4.c:2949:24: warning: variable 'at_end' set but not used [-Wunused-but-set-variable] asn2gnb4.c: In function 'FF_asn2gb_www_featkey': asn2gnb4.c:5194:16: warning: variable 'prefix' set but not used [-Wunused-but-set-variable] asn2gnb4.c: In function 'FormatFeatureBlockEx': asn2gnb4.c:6190:22: warning: variable 'split' set but not used [-Wunused-but-set-variable] asn2gnb4.c: In function 'DoImmediateRemoteFeatureFormat': asn2gnb4.c:8213:19: warning: comparison between 'enum ' and 'enum ' [-Wenum-compare] asn2gnb4.c: In function 'FormatFeatureQuals': asn2gnb4.c:8286:19: warning: comparison between 'enum ' and 'enum ' [-Wenum-compare] asn2gnb4.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] asn2gnb4.c: In function 'FormatFeatureBlockEx': asn2gnb4.c:7188:24: warning: 'sep' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF asn2gnb5.c asn2gnb5.c: In function 'FormatCitBookArt': asn2gnb5.c:1863:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] asn2gnb5.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF asn2gnb6.c asn2gnb6.c: In function 'FlatLocElement': asn2gnb6.c:2384:14: warning: suggest parentheses around '&&' within '||' [-Wparentheses] asn2gnb6.c: In function 'FormatContigBlock': asn2gnb6.c:5367:20: warning: variable 'dspnext' set but not used [-Wunused-but-set-variable] asn2gnb6.c: In function 'FormatSequenceBlock': asn2gnb6.c:5821:21: warning: variable 'iasp' set but not used [-Wunused-but-set-variable] asn2gnb6.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ftusrstr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF gbfeat.c gbfeat.c: In function 'CkLabelType': gbfeat.c:1530:4: warning: suggest parentheses around '&&' within '||' [-Wparentheses] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF gbftglob.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF gbparint.c gbparint.c: In function 'Nlm_gbparselex': gbparint.c:2128:24: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] gbparint.c: In function 'Nlm_gbparselex_ver': gbparint.c:2514:24: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF utilpars.c utilpars.c:113:8: warning: missing braces around initializer [-Wmissing-braces] utilpars.c:113:8: warning: (near initialization for 'ParFlat_AA_array[0]') [-Wmissing-braces] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF utilpub.c utilpub.c: In function 'FindCit': utilpub.c:998:24: warning: variable 'ifp' set but not used [-Wunused-but-set-variable] utilpub.c: In function 'ChangeCitQual': utilpub.c:1053:53: warning: variable 'pub' set but not used [-Wunused-but-set-variable] utilpub.c:1052:34: warning: variable 'descr' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ffprint.c ffprint.c: In function 'FFBSPrint': ffprint.c:347:19: warning: unused variable 'byte_sp' [-Wunused-variable] ffprint.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] ffprint.c:420:16: warning: 'ff_print_insert' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF wprint.c wprint.c: In function 'www_featkey': wprint.c:435:8: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Nlm_Int4' [-Wformat] wprint.c: In function 'www_muid': wprint.c:479:13: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Nlm_Int4' [-Wformat] wprint.c: In function 'LocPrintGenome': wprint.c:1696:14: warning: unused variable 'sep' [-Wunused-variable] wprint.c:1695:25: warning: unused variable 'b' [-Wunused-variable] wprint.c:1695:13: warning: unused variable 'bsp' [-Wunused-variable] wprint.c:1692:34: warning: unused variable 'temp' [-Wunused-variable] wprint.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] wprint.c:77:13: warning: 'link_pir' defined but not used [-Wunused-variable] wprint.c:79:13: warning: 'link_gdb_map' defined but not used [-Wunused-variable] wprint.c: In function 'www_xref': wprint.c:1376:7: warning: 'link' may be used uninitialized in this function [-Wuninitialized] wprint.c:1376:12: warning: 'prefix' may be used uninitialized in this function [-Wuninitialized] wprint.c: In function 'www_xref_button': wprint.c:1419:12: warning: 'prefix' may be used uninitialized in this function [-Wuninitialized] wprint.c:1419:7: warning: 'link' may be used uninitialized in this function [-Wuninitialized] wprint.c: In function 'PrintSPBlock': wprint.c:1443:24: warning: 's' may be used uninitialized in this function [-Wuninitialized] wprint.c:1601:13: warning: 'prefix' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF satutil.c satutil.c: In function 'CopyFeatureFromAlign': satutil.c:1011:10: warning: variable 'check_gap' set but not used [-Wunused-but-set-variable] satutil.c: At top level: satutil.c:168:16: warning: 'bk_map_one_location' defined but not used [-Wunused-function] satutil.c: In function 'CopyFeatureFromAlign': satutil.c:1329:13: warning: 'c_slp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF seqmgr.c seqmgr.c: In function 'SeqEntrySetScope': seqmgr.c:313:13: warning: variable 'found' set but not used [-Wunused-but-set-variable] seqmgr.c: In function 'ClearBioseqFindCache': seqmgr.c:899:14: warning: variable 'smp' set but not used [-Wunused-but-set-variable] seqmgr.c: In function 'SeqMgrGetExtraDataForOmdp': seqmgr.c:3736:14: warning: variable 'omp' set but not used [-Wunused-but-set-variable] seqmgr.c: In function 'CheckForTransSplice': seqmgr.c:5631:14: warning: variable 'prev' set but not used [-Wunused-but-set-variable] seqmgr.c: In function 'SeqEntryAsnOut': seqmgr.c:11599:41: warning: variable 'aopp_desc' set but not used [-Wunused-but-set-variable] seqmgr.c:11599:23: warning: variable 'aopp_feat' set but not used [-Wunused-but-set-variable] seqmgr.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] seqmgr.c: In function 'SeqMgrGetNextDescriptor': seqmgr.c:9488:56: warning: 'bssp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objmgr.c objmgr.c: In function 'ObjMgrDump': objmgr.c:2931:13: warning: format '%u' expects argument of type 'unsigned int', but argument 11 has type 'long unsigned int' [-Wformat] objmgr.c: In function 'ObjMgrSelectFunc2': objmgr.c:4031:22: warning: variable 'retval' set but not used [-Wunused-but-set-variable] objmgr.c: In function 'ObjMgrAlsoSelect': objmgr.c:4109:55: warning: 'ssp' may be used uninitialized in this function [-Wuninitialized] objmgr.c:4030:22: note: 'ssp' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF gather.c gather.c: In function 'AttachDataProc': gather.c:4825:30: warning: variable 'into_seqentry' set but not used [-Wunused-but-set-variable] gather.c: In function 'GatherSeqFeat': gather.c:1570:42: warning: 'newid' may be used uninitialized in this function [-Wuninitialized] gather.c:1530:56: warning: 'max_interval' may be used uninitialized in this function [-Wuninitialized] gather.c:1570:42: warning: 'offset' may be used uninitialized in this function [-Wuninitialized] gather.c:1531:40: warning: 'lrdp' may be used uninitialized in this function [-Wuninitialized] gather.c: In function 'gather_align_data': gather.c:2447:33: warning: 'master_loc' may be used uninitialized in this function [-Wuninitialized] gather.c:2436:70: warning: 'mag_val' may be used uninitialized in this function [-Wuninitialized] gather.c: In function 'GatherBioseqFunc': gather.c:3314:34: warning: 'tlen' may be used uninitialized in this function [-Wuninitialized] gather.c:3296:40: warning: 'trunc_r' may be used uninitialized in this function [-Wuninitialized] gather.c:3291:39: warning: 'trunc_l' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF accmmdbs.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF acccn3ds.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF lsqfetch.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF findrepl.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF codon.c codon.c: In function 'make_cds_paragraph': codon.c:262:7: warning: variable 'space_len' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF jzcoll.c jzcoll.c: In function 'load_default_matrix': jzcoll.c:99:4: warning: array subscript has type 'char' [-Wchar-subscripts] jzcoll.c:99:4: warning: array subscript has type 'char' [-Wchar-subscripts] jzcoll.c:101:3: warning: array subscript has type 'char' [-Wchar-subscripts] jzcoll.c:101:3: warning: array subscript has type 'char' [-Wchar-subscripts] jzcoll.c: In function 'GetUseThisGi': jzcoll.c:143:10: warning: unused variable 'retval' [-Wunused-variable] jzcoll.c: In function 'buffer_for_feature': jzcoll.c:514:7: warning: unused variable 'i' [-Wunused-variable] jzcoll.c: In function 'ProcessTextInsertion': jzcoll.c:878:7: warning: variable 'last_ins' set but not used [-Wunused-but-set-variable] jzcoll.c: In function 'satcollfunc': jzcoll.c:1723:12: warning: variable 'head' set but not used [-Wunused-but-set-variable] jzcoll.c:1721:8: warning: variable 'strand' set but not used [-Wunused-but-set-variable] jzcoll.c:1720:7: warning: variable 'current_pos' set but not used [-Wunused-but-set-variable] jzcoll.c:1714:12: warning: unused variable 'slp' [-Wunused-variable] jzcoll.c: In function 'collect_anpnode_with_option': jzcoll.c:3053:13: warning: unused variable 'prev' [-Wunused-variable] jzcoll.c: In function 'ck_seqfeat_extra': jzcoll.c:3414:10: warning: unused variable 'has_gb' [-Wunused-variable] jzcoll.c: In function 'load_open_close_sts_mark': jzcoll.c:4010:10: warning: variable 'collected' set but not used [-Wunused-but-set-variable] jzcoll.c: In function 'FeatNodeCompProc': jzcoll.c:4225:20: warning: variable 'gr2' set but not used [-Wunused-but-set-variable] jzcoll.c:4225:15: warning: variable 'gr1' set but not used [-Wunused-but-set-variable] jzcoll.c: At top level: jzcoll.c:1654:16: warning: 'collect_sequence_label' defined but not used [-Wunused-function] jzcoll.c:2316:16: warning: 'stop_collecting_alignment' defined but not used [-Wunused-function] jzcoll.c: In function 'load_text': jzcoll.c:421:39: warning: 'smtp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF jzmisc.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF maputil.c maputil.c: In function 'load_gene_list': maputil.c:690:8: warning: variable 'val' set but not used [-Wunused-but-set-variable] maputil.c: In function 'gmarkfunc': maputil.c:985:13: warning: variable 'syn' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF mconsist.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF macroapi.c macroapi.c: In function 'AdvancedStringCompare': macroapi.c:4376:23: warning: variable 'init_target_match_len' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'RemoveGBQualMatch': macroapi.c:6831:27: warning: variable 'does_match' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'SetNameInPrimerList': macroapi.c:10415:21: warning: variable 'prev_pp' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'SetSeqInPrimerList': macroapi.c:10436:21: warning: variable 'prev_pp' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'GetCitListsForSeqEntry': macroapi.c:15286:19: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] macroapi.c:15284:19: warning: variable 'okay' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'GetPubMLStatus': macroapi.c:17582:14: warning: variable 'csp' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'ApplyPartial5SetActionToSeqFeat': macroapi.c:24213:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'ApplyPartial3SetActionToSeqFeat': macroapi.c:24336:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'ApplyPartialBothSetActionToSeqFeat': macroapi.c:24403:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'GetObjectTableForTabTable': macroapi.c:31487:63: warning: variable 'last' set but not used [-Wunused-but-set-variable] macroapi.c: In function 'CheckObjTableForExistingText': macroapi.c:32058:14: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] macroapi.c: At top level: macroapi.c:1173:16: warning: 'IsObjectAppropriateForFieldPair' defined but not used [-Wunused-function] macroapi.c:2743:13: warning: 'OriginFromOriginName' defined but not used [-Wunused-function] macroapi.c:4503:13: warning: 'TestAdvancedStringMatch' defined but not used [-Wunused-function] macroapi.c:5367:16: warning: 'DoesLocationMatchConstraint' defined but not used [-Wunused-function] macroapi.c:10122:16: warning: 'HasMultiplePrimerSets' defined but not used [-Wunused-function] macroapi.c:15475:13: warning: 'InitBatchExtraForAECRActionAndObjectList' defined but not used [-Wunused-function] macroapi.c:31242:16: warning: 'IsFieldTypeProteinDesc' defined but not used [-Wunused-function] macroapi.c:19948:13: warning: 'GetFieldsFromAECR' defined but not used [-Wunused-function] macroapi.c:25246:13: warning: 'GetDescriptorTypeFromDescriptorChoice' defined but not used [-Wunused-function] macroapi.c: In function 'GetFeatureListForProteinBioseq': macroapi.c:30372:10: warning: 'sfp' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'ConvertToSite': macroapi.c:23622:7: warning: 'slp' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'ConvertToBond': macroapi.c:23575:7: warning: 'slp' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'SetAuthorListFromString': macroapi.c:13924:30: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'GetSourceQualFromBioSource': macroapi.c:10759:47: warning: 'subfield' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'GetMultipleSourceQualsFromBioSource': macroapi.c:10906:45: warning: 'subfield' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'RemoveSourceQualFromBioSource': macroapi.c:11087:52: warning: 'subfield' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'CaptureRefBlockSerialNumbers': macroapi.c:15267:26: warning: 'ppr' may be used uninitialized in this function [-Wuninitialized] macroapi.c: In function 'SetFieldValueForObjectEx': macroapi.c:13255:29: warning: 'ipp' may be used uninitialized in this function [-Wuninitialized] macroapi.c:13202:21: note: 'ipp' was declared here macroapi.c:13228:29: warning: 'cpp' may be used uninitialized in this function [-Wuninitialized] macroapi.c:13200:21: note: 'cpp' was declared here macroapi.c: In function 'SetDBxrefForBioSource': macroapi.c:22272:12: warning: 'dbtag' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF salpedit.c salpedit.c: In function 'SeqAlignInsert': salpedit.c:162:12: warning: variable 'ssp' set but not used [-Wunused-but-set-variable] salpedit.c:161:22: warning: variable 'ddp' set but not used [-Wunused-but-set-variable] salpedit.c: At top level: salpedit.c:158:20: warning: 'SeqAlignInsert' defined but not used [-Wunused-function] salpedit.c:254:16: warning: 'is_gap_segment' defined but not used [-Wunused-function] salpedit.c:1169:20: warning: 'JZSeqAlignMerge' defined but not used [-Wunused-function] salpedit.c:1281:13: warning: 'attach_new_align' defined but not used [-Wunused-function] salpedit.c:1387:14: warning: 'has_too_much_overlap' defined but not used [-Wunused-function] salpedit.c:1422:16: warning: 'convert_ddp_to_array' defined but not used [-Wunused-function] salpedit.c:1479:16: warning: 'filter_this_seg' defined but not used [-Wunused-function] salpedit.c:1560:13: warning: 'filter_wrong_orientation' defined but not used [-Wunused-function] salpedit.c:1605:16: warning: 'is_overlap' defined but not used [-Wunused-function] salpedit.c:1665:16: warning: 'free_diag_in_list' defined but not used [-Wunused-function] salpedit.c:2653:16: warning: 'FigureAlignRange' defined but not used [-Wunused-function] salpedit.c:2835:13: warning: 'SeqAnnotWrite' defined but not used [-Wunused-function] salpedit.c:2939:20: warning: 'open_annot' defined but not used [-Wunused-function] salpedit.c:3836:13: warning: 'get_align_list_len' defined but not used [-Wunused-function] salpedit.c:3850:13: warning: 'save_output' defined but not used [-Wunused-function] salpedit.c:3937:13: warning: 'reverse_seqloc' defined but not used [-Wunused-function] salpedit.c:3968:18: warning: 'create_fake_bioseq' defined but not used [-Wunused-function] salpedit.c:4016:18: warning: 'dup_mul_locs' defined but not used [-Wunused-function] salpedit.c:4046:16: warning: 'second_seq_has_gap' defined but not used [-Wunused-function] salpedit.c:4073:17: warning: 'get_best_id' defined but not used [-Wunused-function] salpedit.c:4120:18: warning: 'build_slp_for_gcontig' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF salpstat.c salpstat.c: In function 'DenseSegStats': salpstat.c:310:3: warning: suggest parentheses around '&&' within '||' [-Wparentheses] salpstat.c: In function 'SeqAlignScoreFix': salpstat.c:162:20: warning: 'sp_last' may be used uninitialized in this function [-Wuninitialized] salpstat.c: In function 'DenseSegStats': salpstat.c:382:18: warning: 'spp_2' may be used uninitialized in this function [-Wuninitialized] salpstat.c:381:18: warning: 'spp_1' may be used uninitialized in this function [-Wuninitialized] salpstat.c: In function 'SeqAlignWindowScoreFN': salpstat.c:2038:45: warning: 'score' may be used uninitialized in this function [-Wuninitialized] salpstat.c:2020:34: warning: 'pos' may be used uninitialized in this function [-Wuninitialized] salpstat.c: In function 'SeqAlignWindowScore': salpstat.c:2142:16: warning: 'scoreptr' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF salpacc.c salpacc.c: In function 'SeqAlignStrand': salpacc.c:334:20: warning: unused variable 'this_strand' [-Wunused-variable] salpacc.c: In function 'SeqAlignStop': salpacc.c:561:13: warning: 'this_stop' may be used uninitialized in this function [-Wuninitialized] salpacc.c:495:17: warning: 'val' may be used uninitialized in this function [-Wuninitialized] salpacc.c: In function 'SeqAlignMolType': salpacc.c:626:7: warning: 'bsp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF salprop.c salprop.c: In function 'CopySeqLocFromSeqAlign': salprop.c:291:12: warning: variable 'check_gap' set but not used [-Wunused-but-set-variable] salprop.c: In function 'FeatListToProp': salprop.c:1336:20: warning: variable 'feat_itemID' set but not used [-Wunused-but-set-variable] salprop.c: At top level: ../include/salprop.h:50:16: warning: 'GBFeat' defined but not used [-Wunused-variable] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] salprop.c: In function 'ApplyNewSeqFeat': salprop.c:620:11: warning: 'stop' may be used uninitialized in this function [-Wuninitialized] salprop.c:514:17: note: 'stop' was declared here salprop.c:727:13: warning: 'sfp' may be used uninitialized in this function [-Wuninitialized] salprop.c:674:17: note: 'sfp' was declared here salprop.c:734:23: warning: 'ppp.p5' may be used uninitialized in this function [-Wuninitialized] salprop.c:679:17: note: 'ppp.p5' was declared here salprop.c:679:17: warning: 'ppp.p3' may be used uninitialized in this function [-Wuninitialized] salprop.c:861:53: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized] salprop.c: In function 'MergeFunc': salprop.c:1299:22: warning: 'to_overlapp' may be used uninitialized in this function [-Wuninitialized] salprop.c:1299:22: warning: 'from_overlapp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF salsap.c salsap.c: In function 'DenseDiagToDenseSegFunc': salsap.c:2912:30: warning: variable 'slpstop2' set but not used [-Wunused-but-set-variable] salsap.c:2912:16: warning: variable 'slpstop1' set but not used [-Wunused-but-set-variable] salsap.c:2911:31: warning: variable 'slpstart2' set but not used [-Wunused-but-set-variable] salsap.c:2911:16: warning: variable 'slpstart1' set but not used [-Wunused-but-set-variable] salsap.c:2909:28: warning: variable 'start2' set but not used [-Wunused-but-set-variable] salsap.c:2909:16: warning: variable 'start1' set but not used [-Wunused-but-set-variable] salsap.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] salsap.c:2157:16: warning: 'AreDenseSegSegmentsValid' defined but not used [-Wunused-function] salsap.c:3631:13: warning: 'FindSeqAlignCallback' defined but not used [-Wunused-function] salsap.c: In function 'CleanStrandsSeqAlign': salsap.c:1605:32: warning: 'dim' may be used uninitialized in this function [-Wuninitialized] salsap.c:1669:39: warning: 'numseg' may be used uninitialized in this function [-Wuninitialized] salsap.c:1605:32: warning: 'startp' may be used uninitialized in this function [-Wuninitialized] salsap.c:1670:15: warning: 'lenp' may be used uninitialized in this function [-Wuninitialized] salsap.c:1646:25: warning: 'csp' may be used uninitialized in this function [-Wuninitialized] salsap.c:1648:25: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] salsap.c: In function 'LocalAlignToSeqAnnotDimn': salsap.c:1851:9: warning: 'the_lens' may be used uninitialized in this function [-Wuninitialized] salsap.c: In function 'multseqalign_from_pairseqalign': salsap.c:4498:22: warning: 'strandp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF salstruc.c salstruc.c: In function 'data_collect_arrange': salstruc.c:1338:22: warning: variable 'maxscroll' set but not used [-Wunused-but-set-variable] salstruc.c: In function 'ShowAlignmentText': salstruc.c:2203:29: warning: variable 'itemtype' set but not used [-Wunused-but-set-variable] salstruc.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] salstruc.c: In function 'next_notemptyline': salstruc.c:375:19: warning: 'str' may be used uninitialized in this function [-Wuninitialized] salstruc.c: In function 'data_collect_arrange': salstruc.c:918:65: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized] salstruc.c:872:19: note: 'entityID' was declared here salstruc.c:1093:44: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized] salstruc.c:1005:17: note: 'entityID' was declared here salstruc.c: In function 'ShowAlignmentText': salstruc.c:2194:19: warning: 'bspsip' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF salutil.c salutil.c: In function 'ReadBufferFromSap': salutil.c:128:24: warning: variable 'buffstart' set but not used [-Wunused-but-set-variable] salutil.c:127:15: warning: variable 'sumstart' set but not used [-Wunused-but-set-variable] salutil.c: In function 'IS_protSeqLoc': salutil.c:594:11: warning: variable 'seq' set but not used [-Wunused-but-set-variable] salutil.c: In function 'ReplaceSeqIdWithSeqId': salutil.c:1236:20: warning: variable 'oldscope' set but not used [-Wunused-but-set-variable] salutil.c: In function 'del_ssp_fromid': salutil.c:1722:24: warning: variable 'pressp' set but not used [-Wunused-but-set-variable] salutil.c: In function 'checkCDSselect_forprotein': salutil.c:2510:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] salutil.c: In function 'NoMoreSegGapForOneAlignment': salutil.c:3647:8: warning: implicit declaration of function 'AlnMgr2IndexSingleChildSeqAlign' [-Wimplicit-function-declaration] salutil.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] salutil.c: In function 'del_ssp_fromid': salutil.c:1750:30: warning: 'ssp' may be used uninitialized in this function [-Wuninitialized] salutil.c: In function 'sesp_to_slp': salutil.c:1974:12: warning: 'j' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF udvseq.c udvseq.c: In function 'UDV_EncodeIdxFeat': udvseq.c:448:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] udvseq.c: In function 'UDV_BigEncodeIdxFeat': udvseq.c:473:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blocks.c blocks.c: In function 'IndexBlocks': blocks.c:928:19: warning: operation on 'segp_align->to' may be undefined [-Wsequence-point] blocks.c: In function 'IndexNewBlocks': blocks.c:1084:19: warning: operation on 'segp_align->to' may be undefined [-Wsequence-point] blocks.c: In function 'GetBlockOrientation': blocks.c:2383:4: warning: 'orient' may be used uninitialized in this function [-Wuninitialized] blocks.c: In function 'SAMergeBlocks': blocks.c:2165:21: warning: 'tmp2' may be used uninitialized in this function [-Wuninitialized] blocks.c:1572:28: warning: 'tmp_head' may be used uninitialized in this function [-Wuninitialized] blocks.c:1509:27: warning: 'tmp_curr' may be used uninitialized in this function [-Wuninitialized] blocks.c:1709:27: warning: 'prev' may be used uninitialized in this function [-Wuninitialized] blocks.c:1670:34: warning: 'new_sabp1' may be used uninitialized in this function [-Wuninitialized] blocks.c: In function 'SASplitBlock': blocks.c:2796:25: warning: 'segp2_prev' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF pgppop.c pgppop.c:305:4: warning: missing braces around initializer [-Wmissing-braces] pgppop.c:305:4: warning: (near initialization for 'DDV_PaletteRGB[0]') [-Wmissing-braces] pgppop.c: In function 'DDV_WWW_get_CDS_minus': pgppop.c:574:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable] pgppop.c:572:5: warning: variable 'numivals2' set but not used [-Wunused-but-set-variable] pgppop.c: In function 'DDV_WWW_get_CDS_plus': pgppop.c:696:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable] pgppop.c: In function 'GetClrFromClrGlobal': pgppop.c:1322:4: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] pgppop.c:1322:4: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] pgppop.c: In function 'DDV_DisplayTopScale': pgppop.c:1545:7: warning: unused variable 'szBlank' [-Wunused-variable] pgppop.c: In function 'DDV_GetBLASTCompLine_1': pgppop.c:1981:21: warning: array subscript has type 'char' [-Wchar-subscripts] pgppop.c:1981:21: warning: array subscript has type 'char' [-Wchar-subscripts] pgppop.c: In function 'DDV_DisplayDefaultAlign': pgppop.c:3413:13: warning: unused variable 'sabp' [-Wunused-variable] pgppop.c: In function 'DDV_ShowSeqAlign': pgppop.c:3756:10: warning: unused variable 'szPopSetAuth' [-Wunused-variable] pgppop.c:3754:10: warning: unused variable 'szPopSetName' [-Wunused-variable] pgppop.c: In function 'DDV_PrintPopSetSummary': pgppop.c:3927:9: warning: variable 'bPairwise' set but not used [-Wunused-but-set-variable] pgppop.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] pgppop.c:559:13: warning: 'DDV_WWW_get_CDS_minus' defined but not used [-Wunused-function] pgppop.c:2086:13: warning: 'DDV_HideMaskedLetters' defined but not used [-Wunused-function] pgppop.c:2861:13: warning: 'DDV_GetGappedSequence' defined but not used [-Wunused-function] pgppop.c:2908:13: warning: 'DDV_PrintFastaGappedSequence' defined but not used [-Wunused-function] pgppop.c: In function 'DDV_PopDisplay2': pgppop.c:1242:23: warning: 'pgp2' may be used uninitialized in this function [-Wuninitialized] pgppop.c:1249:14: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized] pgppop.c: In function 'DDV_Print_Sequence': pgppop.c:1339:38: warning: 'idx' may be used uninitialized in this function [-Wuninitialized] pgppop.c:1304:9: note: 'idx' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF samutil.c samutil.c: In function 'DDE_FreeStack': samutil.c:1794:11: warning: operation on 'Index' may be undefined [-Wsequence-point] samutil.c: In function 'DDE_Add': samutil.c:1849:22: warning: operation on 'pStack->StackMin' may be undefined [-Wsequence-point] samutil.c:1860:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point] samutil.c: In function 'DDE_Prev': samutil.c:1924:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point] samutil.c: In function 'DDE_Next': samutil.c:1955:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point] samutil.c: In function 'DDE_ShowRow': samutil.c:2222:26: warning: variable 'NumRows' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_AddGapToEndOfAllRows': samutil.c:3344:41: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_RightAddNode': samutil.c:3945:33: warning: variable 'new_vnp' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_LeftMergeAndAddNodeList': samutil.c:3995:24: warning: variable 'RetVal2' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_RightMergeAndAddNodeList': samutil.c:4051:38: warning: variable 'RetVal2' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_ShiftRightBoundaryLeft1': samutil.c:4830:41: warning: variable 'Index' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_CreateArraysForDenseSeg': samutil.c:5266:22: warning: variable 'NumSegs' set but not used [-Wunused-but-set-variable] samutil.c: In function 'DDE_GetLastVNP': samutil.c:3381:3: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c: In function 'DDE_GetNumResidues': samutil.c:3404:13: warning: 'to' may be used uninitialized in this function [-Wuninitialized] samutil.c: In function 'DDE_RemoveGapFromEndOfAllRows': samutil.c:3287:15: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c:3272:15: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c: In function 'DDE_AddAGap': samutil.c:2659:8: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c:3375:15: note: 'last_vnp' was declared here samutil.c: In function 'DDE_AddGapToEndOfAllRows': samutil.c:3356:9: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c: In function 'DDE_ShiftLeftList': samutil.c:4161:8: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c: In function 'DDE_RemoveGap': samutil.c:3092:8: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c: In function 'DDE_ShiftRowLeft1': samutil.c:2563:13: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c: In function 'DDE_ShiftRowRight1': samutil.c:2594:8: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c: In function 'DDE_LastColumnIsAligned': samutil.c:4448:8: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c: In function 'DDE_ShiftRightBoundaryLeft1': samutil.c:4448:8: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c:3375:15: note: 'last_vnp' was declared here samutil.c: In function 'DDE_ShiftRightBoundaryRight1': samutil.c:4448:8: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized] samutil.c:3375:15: note: 'last_vnp' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ddvcolor.c ddvcolor.c: In function 'DDV_GetColor': ddvcolor.c:1422:10: warning: unused variable 'retval' [-Wunused-variable] ddvcolor.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF viewmgr.c ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] viewmgr.c:683:13: warning: 'ViewMgr_Swap' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ddvcreate.c ddvcreate.c:292:4: warning: missing braces around initializer [-Wmissing-braces] ddvcreate.c:292:4: warning: (near initialization for 'DDV_PaletteRGB[0]') [-Wmissing-braces] ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_1': ddvcreate.c:493:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_2': ddvcreate.c:529:21: warning: variable 'more' set but not used [-Wunused-but-set-variable] ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_EX2': ddvcreate.c:779:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ddvcreate.c:690:21: warning: variable 'last' set but not used [-Wunused-but-set-variable] ddvcreate.c:686:21: warning: variable 'PopulateTo' set but not used [-Wunused-but-set-variable] ddvcreate.c: In function 'DDV_DisplayNewBLAST': ddvcreate.c:1942:16: warning: variable 'what' set but not used [-Wunused-but-set-variable] ddvcreate.c: In function 'UDV_BigEncodeIdxFeat4': ddvcreate.c:2878:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ddvcreate.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ddvcreate.c:525:16: warning: 'DDV_CreateDisplayFromIndex_2' defined but not used [-Wunused-function] ddvcreate.c:2362:16: warning: 'DDV_DisplayBlastSAP' defined but not used [-Wunused-function] ddvcreate.c: In function 'UAMgrIntUAMsg': ddvcreate.c:1141:11: warning: 'stop_middle' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c:1158:73: note: 'stop_middle' was declared here ddvcreate.c:1195:18: warning: 'start_middle' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c:1158:60: note: 'start_middle' was declared here ddvcreate.c:1201:60: warning: 'halfBspLengthSeqR' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c:1158:24: note: 'halfBspLengthSeqR' was declared here ddvcreate.c:1141:11: warning: 'halfBspLengthSeqL' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c:1158:6: note: 'halfBspLengthSeqL' was declared here ddvcreate.c: In function 'DDV_PopulateDisplayForDisc': ddvcreate.c:1048:16: warning: 'vnp_para' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c: In function 'UABuildDescriptor2': ddvcreate.c:1541:13: warning: 'stopcopy' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c: In function 'DDV_DumpSAPInAFile': ddvcreate.c:1798:20: warning: 'matrix' may be used uninitialized in this function [-Wuninitialized] ddvcreate.c: In function 'DDV_ReadSeqBin': ddvcreate.c:2571:13: warning: 'btr' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF jsavlt.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF needleman.c needleman.c: In function 'NeedlemanWunschQuadraticByLoc': needleman.c:281:24: warning: variable 'bestDbPos' set but not used [-Wunused-but-set-variable] needleman.c:281:10: warning: variable 'bestQueryPos' set but not used [-Wunused-but-set-variable] needleman.c: In function 'FetchSequenceByLoc': needleman.c:202:13: warning: 'query' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF txalign.c txalign.c: In function 'addLinkoutForDefline': txalign.c:703:13: warning: variable 'hasLinkout' set but not used [-Wunused-but-set-variable] txalign.c: In function 'addLinkoutForBioseq': txalign.c:771:13: warning: variable 'hasLinkout' set but not used [-Wunused-but-set-variable] txalign.c: In function 'DrawTextToBuffer': txalign.c:1769:8: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Nlm_Int4' [-Wformat] txalign.c:1769:8: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'int' [-Wformat] txalign.c:1769:8: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Nlm_Int4' [-Wformat] txalign.c:1769:8: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'int' [-Wformat] txalign.c:1822:7: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat] txalign.c: In function 'load_align_sum_for_StdSeg': txalign.c:2747:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] txalign.c: In function 'ShowAlignNodeText2Ex': txalign.c:3547:13: warning: variable 'is_end' set but not used [-Wunused-but-set-variable] txalign.c: In function 'Tx_PrintDefLine': txalign.c:4596:7: warning: unused variable 'seqid_length' [-Wunused-variable] txalign.c: In function 'PrintDefLinesFromSeqAlignWithPath': txalign.c:5011:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses] txalign.c:5015:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses] txalign.c:4717:10: warning: unused variable 'ColumnDistance' [-Wunused-variable] txalign.c:4709:43: warning: unused variable 'sip_list' [-Wunused-variable] txalign.c:4705:17: warning: variable 'ptr_start' set but not used [-Wunused-but-set-variable] txalign.c: In function 'FormatScoreFromSeqAlignEx': txalign.c:5334:25: warning: unused variable 't_adj' [-Wunused-variable] txalign.c:5333:29: warning: unused variable 'last_t_to' [-Wunused-variable] txalign.c: In function 'FSFPrintOneDefline': txalign.c:5442:14: warning: variable 'seqid_len' set but not used [-Wunused-but-set-variable] txalign.c: In function 'FormatScoreFunc': txalign.c:5659:13: warning: variable 'allocated' set but not used [-Wunused-but-set-variable] txalign.c: In function 'OOFShowSingleAlignment': txalign.c:6325:13: warning: array subscript has type 'char' [-Wchar-subscripts] txalign.c:6325:13: warning: array subscript has type 'char' [-Wchar-subscripts] txalign.c:6092:13: warning: variable 'lines' set but not used [-Wunused-but-set-variable] txalign.c: In function 'OOFDisplayTraceBack1': txalign.c:6580:33: warning: unused variable 'st' [-Wunused-variable] txalign.c:6580:9: warning: unused variable 'tmp' [-Wunused-variable] txalign.c: In function 'OOFDisplayTraceBack2': txalign.c:6654:33: warning: unused variable 'st' [-Wunused-variable] txalign.c: In function 'FDGetTaxNamesFromBioseq': txalign.c:6756:21: warning: variable 'bdsp' set but not used [-Wunused-but-set-variable] txalign.c: At top level: txalign.c:627:16: warning: 'getNameInitials' defined but not used [-Wunused-function] txalign.c:825:19: warning: 'ProcessTextInsertion' declared 'static' but never defined [-Wunused-function] txalign.c:2337:16: warning: 'has_hit_in_region' defined but not used [-Wunused-function] txalign.c:3432:1: warning: 'get_seq_id' defined but not used [-Wunused-function] txalign.c: In function 'CreateMaskByteStore': txalign.c:937:4: warning: 'mol' may be used uninitialized in this function [-Wuninitialized] txalign.c:985:8: note: 'mol' was declared here txalign.c: In function 'OOFShowSingleAlignment.isra.10': txalign.c:6047:5: warning: 'dna_line_start' may be used uninitialized in this function [-Wuninitialized] txalign.c:6088:32: note: 'dna_line_start' was declared here txalign.c:6047:5: warning: 'pro_line_start' may be used uninitialized in this function [-Wuninitialized] txalign.c:6088:48: note: 'pro_line_start' was declared here txalign.c: In function 'find_score_in_align': txalign.c:2597:33: warning: 'smtp' may be used uninitialized in this function [-Wuninitialized] txalign.c:2497:20: note: 'smtp' was declared here txalign.c:2461:11: warning: 't_spp' may be used uninitialized in this function [-Wuninitialized] txalign.c:2393:23: note: 't_spp' was declared here txalign.c:2458:14: warning: 'm_spp' may be used uninitialized in this function [-Wuninitialized] txalign.c:2393:16: note: 'm_spp' was declared here txalign.c: In function 'ShowAlignNodeText2Ex.isra.11': txalign.c:2283:11: warning: 'm_len' may be used uninitialized in this function [-Wuninitialized] txalign.c:3542:10: note: 'm_len' was declared here txalign.c: In function 'ShowTextAlignFromAnnot3': txalign.c:1241:13: warning: 'retval' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF fdlobj.c fdlobj.c: In function 'BlastDefLineSetAsnRead': fdlobj.c:69:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] fdlobj.c: In function 'BlastDefLineAsnRead': fdlobj.c:202:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF alignmgr2.c alignmgr2.c: In function 'AlnMgr2IndexSingleDenseSegSA': alignmgr2.c:875:13: warning: statement with no effect [-Wunused-value] alignmgr2.c: In function 'AlnMgr2CopySeg': alignmgr2.c:2967:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] alignmgr2.c: In function 'AlnMgr2AddInNewPairwiseSA': alignmgr2.c:3204:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] alignmgr2.c:3206:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] alignmgr2.c:3216:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] alignmgr2.c:3220:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] alignmgr2.c: In function 'AlnMgr2SetUnaln': alignmgr2.c:5393:22: warning: variable 'dsp' set but not used [-Wunused-but-set-variable] alignmgr2.c: In function 'AlnMgr2PrintSeqAlign': alignmgr2.c:5606:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] alignmgr2.c: In function 'AlnMgr2GetNextAlnBit': alignmgr2.c:5702:21: warning: variable 'found' set but not used [-Wunused-but-set-variable] alignmgr2.c: In function 'AlnMgr2GetUnalignedInfo': alignmgr2.c:6068:22: warning: variable 'saip' set but not used [-Wunused-but-set-variable] alignmgr2.c: In function 'AlnMgr2GetInterruptInfo': alignmgr2.c:6314:7: warning: statement with no effect [-Wunused-value] alignmgr2.c: In function 'AlnMgr2ComputeScoreForSeqAlign': alignmgr2.c:8324:17: warning: variable 'numseqs' set but not used [-Wunused-but-set-variable] alignmgr2.c:8322:17: warning: variable 'mismatch' set but not used [-Wunused-but-set-variable] alignmgr2.c:8321:17: warning: variable 'len' set but not used [-Wunused-but-set-variable] alignmgr2.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] alignmgr2.c:2123:13: warning: 'AlnMgr2SortVerticesByNumEdges' defined but not used [-Wunused-function] alignmgr2.c:2351:18: warning: 'AlnMgr2GetEdgeList' defined but not used [-Wunused-function] alignmgr2.c:3540:13: warning: 'AlnMgr2AddInNewSA' defined but not used [-Wunused-function] alignmgr2.c:1051:13: warning: 'AlnMgr2UnpackSeqAlignChain' defined but not used [-Wunused-function] alignmgr2.c: In function 'AlnMgr2GetLongestSeqLoc': alignmgr2.c:10114:15: warning: 'slp_longest' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2IndexLite': alignmgr2.c:991:33: warning: 'sap_segs_prev' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:958:17: note: 'sap_segs_prev' was declared here alignmgr2.c: In function 'AlnMgr2GetUnalignedInfo': alignmgr2.c:6099:27: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetMaxUnalignedLength': alignmgr2.c:7031:22: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:7060:19: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetInterruptInfo': alignmgr2.c:6336:16: warning: 'iip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6165:19: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6321:32: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNthSeqRangeInSA': alignmgr2.c:6459:16: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6472:57: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNthRowSpanInSA': alignmgr2.c:6516:16: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6541:41: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetAlnLength': alignmgr2.c:6772:45: warning: 'salp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6757:12: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6769:22: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNextAlnBit': alignmgr2.c:5757:44: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:5808:22: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2IsSAPDiscAli': alignmgr2.c:6796:12: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNumAlnBlocks': alignmgr2.c:6819:12: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNthBlockRange': alignmgr2.c:6853:20: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNthUnalignedForNthRow': alignmgr2.c:6909:75: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6919:65: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNextLengthBit': alignmgr2.c:7001:25: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:6937:22: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetNumSegsInRange': alignmgr2.c:7168:62: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:7169:9: warning: 'aligncoords' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2MapBioseqToSeqAlign': alignmgr2.c:7602:18: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:7573:21: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2MapSeqAlignToBioseq': alignmgr2.c:7695:18: warning: 'saip' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:7713:36: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2GetSubAlign': alignmgr2.c:8248:34: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c:8019:7: warning: 'sap_real' may be used uninitialized in this function [-Wuninitialized] alignmgr2.c: In function 'AlnMgr2FillInUnaligned': alignmgr2.c:9852:12: warning: 'offset' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF alnread.c alnread.c: In function 's_AddStringCount': alnread.c:1901:30: warning: variable 'last' set but not used [-Wunused-but-set-variable] alnread.c: In function 's_RemoveCommentsFromTokens': alnread.c:4332:19: warning: variable 'cp_l' set but not used [-Wunused-but-set-variable] alnread.c: In function 's_CreateOffsetList': alnread.c:4637:23: warning: variable 'prev_sip' set but not used [-Wunused-but-set-variable] alnread.c: In function 's_InsertNewOffsets': alnread.c:5034:23: warning: variable 'prev_start' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF acerdapi.c acerdapi.c: In function 'DoesSeqStringMatchBsp': acerdapi.c:201:30: warning: variable 'seq_len' set but not used [-Wunused-but-set-variable] acerdapi.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF aceread.c aceread.c:140:12: warning: 's_IsGapChar' defined but not used [-Wunused-function] aceread.c:253:13: warning: 'AdjustGapInfoFor5Trim' defined but not used [-Wunused-function] aceread.c:282:13: warning: 'AdjustGapInfoFor3Trim' defined but not used [-Wunused-function] aceread.c:3314:12: warning: 's_GetUngappedPosition' defined but not used [-Wunused-function] aceread.c: In function 's_ReadContig': aceread.c:1483:38: warning: 'linestring' may be used uninitialized in this function [-Wuninitialized] rm -f libncbiobj.a ar cru libncbiobj.a objacces.o objalign.o objall.o objbibli.o objfeat.o objgen.o objloc.o objmedli.o objpub.o objres.o objscoremat.o objseq.o objblock.o objcode.o objsset.o objsub.o objprt.o objfdef.o objalignloc.o objtable.o objpubme.o objmdrs.o objproj.o objgbseq.o objtseq.o objinsdseq.o objmacro.o objent2.o ent2api.o pmfapi.o objtax3.o tax3api.o objegkludge.o objentgene.o objmla2.o mla2api.o qblastapi.o vecscnapi.o objmim.o objvalid.o mimapi.o cddapi.o seqport.o sequtil.o prtutil.o simple.o tofasta.o tofile.o tomedlin.o valid.o valapi.o alignmgr.o aliparse.o aliread.o alignval.o sqnutil1.o sqnutil2.o sqnutil3.o sqnutil4.o subutil.o edutil.o asn2ff1.o asn2ff2.o asn2ff3.o asn2ff4.o asn2ff5.o asn2ff6.o asn2gnb1.o asn2gnb2.o asn2gnb3.o asn2gnb4.o asn2gnb5.o asn2gnb6.o ftusrstr.o gbfeat.o gbftglob.o gbparint.o utilpars.o utilpub.o ffprint.o wprint.o satutil.o seqmgr.o objmgr.o gather.o accmmdbs.o acccn3ds.o lsqfetch.o findrepl.o codon.o jzcoll.o jzmisc.o maputil.o mconsist.o macroapi.o salpedit.o salpstat.o salpacc.o salprop.o salsap.o salstruc.o salutil.o udvseq.o blocks.o pgppop.o samutil.o ddvcolor.o viewmgr.o ddvcreate.o jsavlt.o needleman.o txalign.o fdlobj.o alignmgr2.o alnread.o acerdapi.o aceread.o cp -p libncbiobj.a ../lib ranlib ../lib/libncbiobj.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF cdentrez.c cdentrez.c:1616:26: warning: 'FreePostingList' defined but not used [-Wunused-function] cdentrez.c:2935:23: warning: 'MedSumAsnRead' defined but not used [-Wunused-function] cdentrez.c:283:23: warning: 'CdEntMlSumGet' declared 'static' but never defined [-Wunused-function] cdentrez.c:307:20: warning: 'BIOSEQ_id_E' defined but not used [-Wunused-variable] cdentrez.c:310:23: warning: 'CdEntSeqSumGet' declared 'static' but never defined [-Wunused-function] cdentrez.c: In function 'CdEntrezMergeTerm': cdentrez.c:2665:27: warning: 'total' may be used uninitialized in this function [-Wuninitialized] cdentrez.c:2672:17: warning: 'special' may be used uninitialized in this function [-Wuninitialized] cdentrez.c:2640:20: warning: 'termpage' may be used uninitialized in this function [-Wuninitialized] cdentrez.c: In function 'CdLinkUidList': cdentrez.c:938:2: warning: 'count' may be used uninitialized in this function [-Wuninitialized] cdentrez.c: In function 'CdTermListByTerm': cdentrez.c:1036:10: warning: 'first' may be used uninitialized in this function [-Wuninitialized] cdentrez.c: In function 'CdEntrezFindTerm': cdentrez.c:1121:14: warning: 'ctp' may be used uninitialized in this function [-Wuninitialized] cdentrez.c: In function 'CdEntTLAddTerm': cdentrez.c:1895:33: warning: 'total' may be used uninitialized in this function [-Wuninitialized] cdentrez.c:1787:13: note: 'total' was declared here cdentrez.c: In function 'CdEntMedlineEntryListGet': cdentrez.c:2717:9: warning: 'aip' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF cdromlib.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF cdnewlib.c cdnewlib.c:601:2: warning: missing braces around initializer [-Wmissing-braces] cdnewlib.c:601:2: warning: (near initialization for '_finfo[0]') [-Wmissing-braces] cdnewlib.c:615:2: warning: missing braces around initializer [-Wmissing-braces] cdnewlib.c:615:2: warning: (near initialization for '_dir[0]') [-Wmissing-braces] cdnewlib.c: In function 'cd3_CdDocAsnOpen': cdnewlib.c:1327:9: warning: unused variable 'fdir' [-Wunused-variable] cdnewlib.c: In function 'CdDevice_Init': cdnewlib.c:2739:6: warning: variable 'cd_num' set but not used [-Wunused-but-set-variable] cdnewlib.c: At top level: cdnewlib.c:3506:12: warning: 'Cache_Delete' defined but not used [-Wunused-function] cdnewlib.c:3569:12: warning: 'Cache_Touch' defined but not used [-Wunused-function] cdnewlib.c:3592:14: warning: 'Cache_Peek' defined but not used [-Wunused-function] cdnewlib.c:3605:13: warning: 'Cache_Purge' defined but not used [-Wunused-function] cdnewlib.c:582:15: warning: '_empty_string' defined but not used [-Wunused-variable] cdnewlib.c:638:18: warning: '_div' defined but not used [-Wunused-variable] cdnewlib.c: In function 'UnixFileGets': cdnewlib.c:1509:6: warning: 'ch' may be used uninitialized in this function [-Wuninitialized] cdnewlib.c: In function 'trmncmp': cdnewlib.c:2379:2: warning: 'c2' may be used uninitialized in this function [-Wuninitialized] cdnewlib.c:2379:2: warning: 'c1' may be used uninitialized in this function [-Wuninitialized] In file included from /usr/include/string.h:642:0, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objacces.h:64, from ../include/cdromlib.h:71, from cdnewlib.c:208: In function 'strncat', inlined from 'CdDevice_FileBuildPath.part.16' at cdnewlib.c:2679:12, inlined from 'CdDevice_FileBuildPath' at cdnewlib.c:2662:12: /usr/include/i386-linux-gnu/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] In function 'strncat', inlined from 'CdDevice_Init.part.20' at cdnewlib.c:2751:10: /usr/include/i386-linux-gnu/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] In function 'strncat', inlined from 'CdDevice_Init.part.20' at cdnewlib.c:2769:13: /usr/include/i386-linux-gnu/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] cdnewlib.c: In function 'UidIndex_Lookup': cdnewlib.c:1986:20: warning: 'p' may be used uninitialized in this function [-Wuninitialized] cdnewlib.c:1986:30: warning: 'mid' may be used uninitialized in this function [-Wuninitialized] cdnewlib.c: In function 'TrmIndex_Lookup': cdnewlib.c:2168:33: warning: 'term' may be used uninitialized in this function [-Wuninitialized] cdnewlib.c:2166:12: warning: 'd' may be used uninitialized in this function [-Wuninitialized] cdnewlib.c:2166:24: warning: 'mid' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF casn.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF cdconfig.c cdconfig.c: In function 'ChangeMedia': cdconfig.c:941:29: warning: statement with no effect [-Wunused-value] cdconfig.c:960:17: warning: statement with no effect [-Wunused-value] cdconfig.c: At top level: cdconfig.c:191:17: warning: 'UnMarkLRUineligible' declared 'static' but never defined [-Wunused-function] cdconfig.c: In function 'EntrezInfoMerge': cdconfig.c:1250:44: warning: 'besttype' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objentr.c objentr.c: In function 'DocSumAsnRead': objentr.c:970:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objentr.c:969:12: warning: unused variable 'isError' [-Wunused-variable] objentr.c: At top level: objentr.c:771:16: warning: 'EntrezLinkInfo_AsnWrite' defined but not used [-Wunused-function] objentr.c:806:23: warning: 'EntrezDivInfo_Destruct' defined but not used [-Wunused-function] objentr.c: In function 'EntrezInfoAsnRead': objentr.c:818:5: warning: 'div' may be used uninitialized in this function [-Wuninitialized] objentr.c:241:17: note: 'div' was declared here objentr.c:763:17: warning: 'link' may be used uninitialized in this function [-Wuninitialized] objentr.c:240:18: note: 'link' was declared here objentr.c:704:19: warning: 'fld' may be used uninitialized in this function [-Wuninitialized] objentr.c:239:19: note: 'fld' was declared here objentr.c:649:18: warning: 'tinf' may be used uninitialized in this function [-Wuninitialized] objentr.c:238:18: note: 'tinf' was declared here objentr.c:856:16: warning: 'i' may be used uninitialized in this function [-Wuninitialized] objentr.c:824:7: note: 'i' was declared here rm -f libncbicdr.a ar cru libncbicdr.a cdentrez.o cdromlib.o cdnewlib.o casn.o cdconfig.o objentr.o cp -p libncbicdr.a ../lib ranlib ../lib/libncbicdr.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF vibbutns.c vibbutns.c: In function 'Nlm_LoadButtonData': vibbutns.c:117:5: warning: statement with no effect [-Wunused-value] vibbutns.c: In function 'Nlm_GetButtonData': vibbutns.c:133:7: warning: statement with no effect [-Wunused-value] vibbutns.c: In function 'Nlm_CheckCallback': vibbutns.c:328:20: warning: variable 'c' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_RadioCallback': vibbutns.c:347:20: warning: variable 'c' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_RemoveDefaultButton': vibbutns.c:564:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_SetButtonStatus': vibbutns.c:668:20: warning: variable 'val' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_SetButtonDefault': vibbutns.c:1416:7: warning: statement with no effect [-Wunused-value] vibbutns.c: In function 'Nlm_NewButton.isra.5': vibbutns.c:1133:17: warning: 'call' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF vibextra.c vibextra.c: In function 'Nlm_RGB2HSL.constprop.2': vibextra.c:1216:7: warning: 'min' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF vibfiles.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF vibforms.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF vibgroup.c vibgroup.c: In function 'Nlm_LoadGroupData': vibgroup.c:142:5: warning: statement with no effect [-Wunused-value] vibgroup.c: In function 'Nlm_GetGroupData': vibgroup.c:159:7: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF viblists.c viblists.c: In function 'Nlm_LoadListData': viblists.c:220:5: warning: statement with no effect [-Wunused-value] viblists.c: In function 'Nlm_SetListData': viblists.c:233:5: warning: statement with no effect [-Wunused-value] viblists.c: In function 'Nlm_GetListData': viblists.c:250:7: warning: statement with no effect [-Wunused-value] viblists.c: In function 'Nlm_SetListPosition': viblists.c:1118:15: warning: variable 'is_realized' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF vibmenus.c vibmenus.c: In function 'Nlm_LoadMenuData': vibmenus.c:193:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetMenuData': vibmenus.c:210:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_LoadItemData': vibmenus.c:230:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_SetItemData': vibmenus.c:243:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetItemData': vibmenus.c:261:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_LoadChoiceData': vibmenus.c:283:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_SetChoiceData': vibmenus.c:296:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetChoiceData': vibmenus.c:313:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_LoadMenuBarData': vibmenus.c:331:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetMenuBarData': vibmenus.c:363:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_IsMenuItemChecked': vibmenus.c:563:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_CheckMenuItem': vibmenus.c:591:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableMenuItem': vibmenus.c:1986:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:1985:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableChoice': vibmenus.c:2052:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableChoiceGroup': vibmenus.c:2102:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableChoiceItem': vibmenus.c:2146:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:2144:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_DisableMenuItem': vibmenus.c:2309:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:2308:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_DisableChoice': vibmenus.c:2375:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_DisableChoiceItem': vibmenus.c:2469:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:2467:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_RemoveSubMenu': vibmenus.c:2607:20: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_CountMenuItems': vibmenus.c:3036:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_GetMenuItem': vibmenus.c:3219:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_GetPopListTitle': vibmenus.c:3329:18: warning: variable 'm' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_AppendItems': vibmenus.c:3948:17: warning: unused variable 'accel' [-Wunused-variable] vibmenus.c: In function 'Nlm_NewPopupList': vibmenus.c:4939:19: warning: unused variable 'lbl' [-Wunused-variable] vibmenus.c:4937:19: warning: unused variable 'color' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF vibprmpt.c vibprmpt.c: In function 'Nlm_LoadPromptData': vibprmpt.c:129:5: warning: statement with no effect [-Wunused-value] vibprmpt.c: In function 'Nlm_GetPromptData': vibprmpt.c:145:7: warning: statement with no effect [-Wunused-value] vibprmpt.c: In function 'Nlm_NewPrompt': vibprmpt.c:663:5: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF vibsbars.c vibsbars.c: In function 'Nlm_SetBarData': vibsbars.c:191:3: warning: statement with no effect [-Wunused-value] vibsbars.c: In function 'Nlm_GetBarData': vibsbars.c:208:7: warning: statement with no effect [-Wunused-value] vibsbars.c: In function 'Nlm_LoadBarData': vibsbars.c:429:3: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF vibslate.c vibslate.c: In function 'Nlm_LoadSlateData': vibslate.c:247:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetSlateData': vibslate.c:260:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetSlateData': vibslate.c:277:7: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_LoadPanelData': vibslate.c:305:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetPanelData': vibslate.c:317:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetPanelData': vibslate.c:329:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_LoadDisplayData': vibslate.c:351:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetDisplayData': vibslate.c:364:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetDisplayData': vibslate.c:381:7: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetPanelExtra': vibslate.c:407:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetPanelExtra': vibslate.c:430:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SlateVertScrollAction': vibslate.c:1003:11: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_EnableSlate': vibslate.c:1199:18: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_DisableSlate': vibslate.c:1254:18: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_SelectSlate': vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat] vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_SelectPanel': vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat] vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_GetPanelOffset': vibslate.c:1624:7: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SlateClick': vibslate.c:2026:20: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_SlateClickCallback': vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat] vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_SlateInputCallback': vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat] vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_SlateDrawCallback': vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat] vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_RegisterRow': vibslate.c:3400:9: warning: statement with no effect [-Wunused-value] vibslate.c:3410:13: warning: statement with no effect [-Wunused-value] vibslate.c:3426:7: warning: statement with no effect [-Wunused-value] vibslate.c:3454:7: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF vibtexts.c vibtexts.c: In function 'Nlm_LoadTextData': vibtexts.c:154:5: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_SetTextData': vibtexts.c:167:5: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_GetTextData': vibtexts.c:184:7: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_SetPassword': vibtexts.c:312:7: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_GetPassword': vibtexts.c:324:7: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_GetPasswordLength': vibtexts.c:333:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_TextCallback': vibtexts.c:2982:24: warning: unused variable 'cbs' [-Wunused-variable] vibtexts.c: In function 'Nlm_LoseFocusCallback': vibtexts.c:2999:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_TabCallback': vibtexts.c:3109:15: warning: variable 'event' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_HiddenReturnCallback': vibtexts.c:3122:15: warning: variable 'event' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_HiddenActivateCallback': vibtexts.c:3135:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_NewDialogText': vibtexts.c:3229:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewPasswordText': vibtexts.c:3338:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewHiddenText': vibtexts.c:3456:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewSpecialText': vibtexts.c:3582:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewScrollText': vibtexts.c:3756:5: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF vibutils.c vibutils.c: In function 'Nlm_SetString': vibutils.c:506:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetString': vibutils.c:526:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_LinkIn': vibutils.c:2385:5: warning: statement with no effect [-Wunused-value] vibutils.c:2389:7: warning: statement with no effect [-Wunused-value] vibutils.c:2392:7: warning: statement with no effect [-Wunused-value] vibutils.c:2401:7: warning: statement with no effect [-Wunused-value] vibutils.c:2404:7: warning: statement with no effect [-Wunused-value] vibutils.c:2409:7: warning: statement with no effect [-Wunused-value] vibutils.c:2416:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_LoadGraphicData': vibutils.c:2462:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_LoadBoxData': vibutils.c:2492:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_RemoveLink': vibutils.c:2578:11: warning: statement with no effect [-Wunused-value] vibutils.c:2586:3: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_SetGraphicData': vibutils.c:2922:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetGraphicData': vibutils.c:2939:7: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_SetBoxData': vibutils.c:2954:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetBoxData': vibutils.c:2971:7: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_SetExtraData': vibutils.c:2996:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetExtraData': vibutils.c:3018:5: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF vibwndws.c vibwndws.c: In function 'Nlm_LoadWindowData': vibwndws.c:411:5: warning: statement with no effect [-Wunused-value] vibwndws.c: In function 'Nlm_SetWindowData': vibwndws.c:424:5: warning: statement with no effect [-Wunused-value] vibwndws.c: In function 'Nlm_GetWindowData': vibwndws.c:441:7: warning: statement with no effect [-Wunused-value] vibwndws.c: In function 'Nlm_SetColorMap': vibwndws.c:1060:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_SetWindowTitle': vibwndws.c:1567:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_GetWindowTitle': vibwndws.c:1610:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_NewWindow': vibwndws.c:2155:19: warning: variable 'screen_num' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_HideWindow': vibwndws.c:2526:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_ShowNormal': vibwndws.c:2969:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_ShowModal': vibwndws.c:3014:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_ShowDocument': vibwndws.c:3060:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_VibMainPrelude': vibwndws.c:6771:13: warning: unused variable 'retval' [-Wunused-variable] vibwndws.c: In function 'Nlm_RemoveDyingWindows': vibwndws.c:6893:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF vibmain.c vibmain.c:121:1: warning: return type defaults to 'int' [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbidraw.c ncbidraw.c: In function 'Nlm_SetFontData': ncbidraw.c:489:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_GetFontData': ncbidraw.c:501:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_FindFont': ncbidraw.c:2234:7: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_ReuseFont': ncbidraw.c:2252:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_GetFontSpec': ncbidraw.c:2860:5: warning: statement with no effect [-Wunused-value] ncbidraw.c:2867:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_AssignPrinterFont': ncbidraw.c:2928:5: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF drawing.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF mapping.c mapping.c: In function 'Nlm_MapRectToWorldBox': mapping.c:139:8: warning: variable 'curScale' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF picture.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF viewer.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF document.c document.c: In function 'Nlm_PrintDocument': document.c:4413:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] document.c:4417:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF table.c table.c: In function 'SetCellRec': table.c:136:9: warning: statement with no effect [-Wunused-value] table.c:138:7: warning: statement with no effect [-Wunused-value] table.c: In function 'GetCellRec': table.c:175:9: warning: statement with no effect [-Wunused-value] table.c:177:7: warning: statement with no effect [-Wunused-value] table.c: In function 'GetColRec': table.c:231:7: warning: statement with no effect [-Wunused-value] table.c: In function 'DrawTable': table.c:314:9: warning: statement with no effect [-Wunused-value] table.c:317:5: warning: statement with no effect [-Wunused-value] table.c:318:5: warning: statement with no effect [-Wunused-value] table.c:319:5: warning: statement with no effect [-Wunused-value] table.c:334:5: warning: statement with no effect [-Wunused-value] table.c: In function 'RecordColumn': table.c:380:5: warning: statement with no effect [-Wunused-value] table.c: In function 'RecordSegment': table.c:428:7: warning: statement with no effect [-Wunused-value] table.c:440:9: warning: statement with no effect [-Wunused-value] table.c:442:7: warning: statement with no effect [-Wunused-value] table.c: In function 'CopyToHandle': table.c:510:7: warning: statement with no effect [-Wunused-value] table.c:518:7: warning: statement with no effect [-Wunused-value] table.c:527:7: warning: statement with no effect [-Wunused-value] table.c: In function 'AppendTableText': table.c:632:7: warning: statement with no effect [-Wunused-value] table.c: In function 'GetTableText': table.c:710:13: warning: statement with no effect [-Wunused-value] table.c:718:11: warning: statement with no effect [-Wunused-value] table.c:727:9: warning: statement with no effect [-Wunused-value] table.c:743:7: warning: statement with no effect [-Wunused-value] table.c: In function 'TableTextLength': table.c:783:13: warning: statement with no effect [-Wunused-value] table.c:791:11: warning: statement with no effect [-Wunused-value] table.c:800:9: warning: statement with no effect [-Wunused-value] table.c: In function 'ResetTable': table.c:1090:5: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF palette.c palette.c: In function 'DrawPalette': palette.c:116:5: warning: statement with no effect [-Wunused-value] palette.c: In function 'AppendPalette': palette.c:161:5: warning: statement with no effect [-Wunused-value] palette.c: In function 'SetPaletteValue': palette.c:216:7: warning: statement with no effect [-Wunused-value] palette.c: In function 'GetPaletteValue': palette.c:240:7: warning: statement with no effect [-Wunused-value] palette.c: In function 'PaletteClick': palette.c:306:7: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF diagnost.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF image.c image.c: In function 'Nlm_AllocateImage': image.c:207:28: warning: statement with no effect [-Wunused-value] image.c:274:3: warning: statement with no effect [-Wunused-value] image.c: In function 'Nlm_DeleteImage': image.c:691:9: warning: statement with no effect [-Wunused-value] image.c: In function 'Nlm_UnlockPixMapImage': image.c:804:7: warning: statement with no effect [-Wunused-value] image.c: In function 'ShiftXMask': image.c:840:9: warning: suggest parentheses around '+' inside '>>' [-Wparentheses] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF pictur3d.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF prim3d1.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF prim3d2.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF prim3d3.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF prim3d4.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF prim3d5.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF viewer3d.c viewer3d.c: In function 'DrawViewer3D': viewer3d.c:521:7: warning: statement with no effect [-Wunused-value] viewer3d.c: In function 'Nlm_RedrawPrim3D': viewer3d.c:995:3: warning: statement with no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF vibmouse.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF netscape.c netscape.c: In function 'NS_Obtain_lock': netscape.c:236:10: warning: variable 'waited' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF imagelst.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF treeview.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF shim3d.c shim3d.c: In function 'Nlm_AddHalfWorm3D': shim3d.c:3461:46: warning: unused variable 'tmp' [-Wunused-variable] shim3d.c:3461:40: warning: unused variable 'pCz' [-Wunused-variable] shim3d.c:3461:34: warning: unused variable 'pCy' [-Wunused-variable] shim3d.c:3461:28: warning: unused variable 'pCx' [-Wunused-variable] shim3d.c:3461:22: warning: unused variable 'pNz' [-Wunused-variable] shim3d.c:3461:16: warning: unused variable 'pNy' [-Wunused-variable] shim3d.c:3461:10: warning: unused variable 'pNx' [-Wunused-variable] shim3d.c:3460:47: warning: unused variable 'Cz' [-Wunused-variable] shim3d.c:3460:42: warning: unused variable 'Cy' [-Wunused-variable] shim3d.c:3460:37: warning: unused variable 'Cx' [-Wunused-variable] shim3d.c:3460:32: warning: unused variable 'Nz' [-Wunused-variable] shim3d.c:3460:27: warning: unused variable 'Ny' [-Wunused-variable] shim3d.c:3460:15: warning: unused variable 'Nx' [-Wunused-variable] shim3d.c:3459:21: warning: unused variable 'pi' [-Wunused-variable] shim3d.c:3459:15: warning: unused variable 'sinj' [-Wunused-variable] shim3d.c:3459:9: warning: unused variable 'cosj' [-Wunused-variable] shim3d.c:3458:33: warning: unused variable 'prevlen' [-Wunused-variable] shim3d.c:3458:29: warning: unused variable 'Vz' [-Wunused-variable] shim3d.c:3458:25: warning: unused variable 'Vy' [-Wunused-variable] shim3d.c:3458:21: warning: unused variable 'Vx' [-Wunused-variable] shim3d.c:3458:17: warning: unused variable 'Hz' [-Wunused-variable] shim3d.c:3458:13: warning: unused variable 'Hy' [-Wunused-variable] shim3d.c:3458:9: warning: unused variable 'Hx' [-Wunused-variable] shim3d.c:3457:21: warning: unused variable 'dQtz' [-Wunused-variable] shim3d.c:3457:15: warning: unused variable 'dQty' [-Wunused-variable] shim3d.c:3457:9: warning: unused variable 'dQtx' [-Wunused-variable] shim3d.c:3455:14: warning: unused variable 'len' [-Wunused-variable] shim3d.c:3454:26: warning: unused variable 'offset' [-Wunused-variable] shim3d.c:3454:23: warning: unused variable 'm' [-Wunused-variable] shim3d.c:3454:20: warning: unused variable 'k' [-Wunused-variable] shim3d.c:3454:17: warning: unused variable 'j' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF odlbox.c odlbox.c: In function 'LB_onVScroll': odlbox.c:424:12: warning: variable 'IsGoUp' set but not used [-Wunused-but-set-variable] rm -f libvibrant.a ar cru libvibrant.a vibbutns.o vibextra.o vibfiles.o vibforms.o vibgroup.o viblists.o vibmenus.o vibprmpt.o vibsbars.o vibslate.o vibtexts.o vibutils.o vibwndws.o vibmain.o ncbidraw.o drawing.o mapping.o picture.o viewer.o document.o table.o palette.o diagnost.o image.o pictur3d.o prim3d1.o prim3d2.o prim3d3.o prim3d4.o prim3d5.o viewer3d.o vibmouse.o netscape.o imagelst.o treeview.o shim3d.o odlbox.o cp -p libvibrant.a ../lib ranlib ../lib/libvibrant.a mv vibbutns.o vibbutns.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibbutns.c vibbutns.c: In function 'Nlm_LoadButtonData': vibbutns.c:117:5: warning: statement with no effect [-Wunused-value] vibbutns.c: In function 'Nlm_GetButtonData': vibbutns.c:133:7: warning: statement with no effect [-Wunused-value] vibbutns.c: In function 'Nlm_CheckCallback': vibbutns.c:328:20: warning: variable 'c' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_RadioCallback': vibbutns.c:347:20: warning: variable 'c' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_RemoveDefaultButton': vibbutns.c:564:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_SetButtonStatus': vibbutns.c:668:20: warning: variable 'val' set but not used [-Wunused-but-set-variable] vibbutns.c: In function 'Nlm_SetButtonDefault': vibbutns.c:1416:7: warning: statement with no effect [-Wunused-value] vibbutns.c: In function 'Nlm_NewButton.isra.5': vibbutns.c:1133:17: warning: 'call' may be used uninitialized in this function [-Wuninitialized] mv vibbutns.o vibbutns.glo mv vibbutns.tmp vibbutns.o mv vibextra.o vibextra.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibextra.c vibextra.c: In function 'Nlm_RGB2HSL.constprop.2': vibextra.c:1216:7: warning: 'min' may be used uninitialized in this function [-Wuninitialized] mv vibextra.o vibextra.glo mv vibextra.tmp vibextra.o mv vibfiles.o vibfiles.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibfiles.c mv vibfiles.o vibfiles.glo mv vibfiles.tmp vibfiles.o mv vibforms.o vibforms.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibforms.c mv vibforms.o vibforms.glo mv vibforms.tmp vibforms.o mv vibgroup.o vibgroup.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibgroup.c vibgroup.c: In function 'Nlm_LoadGroupData': vibgroup.c:142:5: warning: statement with no effect [-Wunused-value] vibgroup.c: In function 'Nlm_GetGroupData': vibgroup.c:159:7: warning: statement with no effect [-Wunused-value] mv vibgroup.o vibgroup.glo mv vibgroup.tmp vibgroup.o mv viblists.o viblists.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viblists.c viblists.c: In function 'Nlm_LoadListData': viblists.c:220:5: warning: statement with no effect [-Wunused-value] viblists.c: In function 'Nlm_SetListData': viblists.c:233:5: warning: statement with no effect [-Wunused-value] viblists.c: In function 'Nlm_GetListData': viblists.c:250:7: warning: statement with no effect [-Wunused-value] viblists.c: In function 'Nlm_SetListPosition': viblists.c:1118:15: warning: variable 'is_realized' set but not used [-Wunused-but-set-variable] mv viblists.o viblists.glo mv viblists.tmp viblists.o mv vibmenus.o vibmenus.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmenus.c vibmenus.c: In function 'Nlm_LoadMenuData': vibmenus.c:193:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetMenuData': vibmenus.c:210:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_LoadItemData': vibmenus.c:230:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_SetItemData': vibmenus.c:243:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetItemData': vibmenus.c:261:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_LoadChoiceData': vibmenus.c:283:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_SetChoiceData': vibmenus.c:296:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetChoiceData': vibmenus.c:313:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_LoadMenuBarData': vibmenus.c:331:5: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_GetMenuBarData': vibmenus.c:363:7: warning: statement with no effect [-Wunused-value] vibmenus.c: In function 'Nlm_IsMenuItemChecked': vibmenus.c:563:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_CheckMenuItem': vibmenus.c:591:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableMenuItem': vibmenus.c:1986:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:1985:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableChoice': vibmenus.c:2052:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableChoiceGroup': vibmenus.c:2102:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_EnableChoiceItem': vibmenus.c:2146:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:2144:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_DisableMenuItem': vibmenus.c:2309:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:2308:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_DisableChoice': vibmenus.c:2375:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_DisableChoiceItem': vibmenus.c:2469:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] vibmenus.c:2467:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_RemoveSubMenu': vibmenus.c:2607:20: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_CountMenuItems': vibmenus.c:3036:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_GetMenuItem': vibmenus.c:3219:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_GetPopListTitle': vibmenus.c:3329:18: warning: variable 'm' set but not used [-Wunused-but-set-variable] vibmenus.c: In function 'Nlm_AppendItems': vibmenus.c:3948:17: warning: unused variable 'accel' [-Wunused-variable] vibmenus.c: In function 'Nlm_NewPopupList': vibmenus.c:4939:19: warning: unused variable 'lbl' [-Wunused-variable] vibmenus.c:4937:19: warning: unused variable 'color' [-Wunused-variable] mv vibmenus.o vibmenus.glo mv vibmenus.tmp vibmenus.o mv vibprmpt.o vibprmpt.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibprmpt.c vibprmpt.c: In function 'Nlm_LoadPromptData': vibprmpt.c:129:5: warning: statement with no effect [-Wunused-value] vibprmpt.c: In function 'Nlm_GetPromptData': vibprmpt.c:145:7: warning: statement with no effect [-Wunused-value] vibprmpt.c: In function 'Nlm_NewPrompt': vibprmpt.c:663:5: warning: statement with no effect [-Wunused-value] mv vibprmpt.o vibprmpt.glo mv vibprmpt.tmp vibprmpt.o mv vibsbars.o vibsbars.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibsbars.c vibsbars.c: In function 'Nlm_SetBarData': vibsbars.c:191:3: warning: statement with no effect [-Wunused-value] vibsbars.c: In function 'Nlm_GetBarData': vibsbars.c:208:7: warning: statement with no effect [-Wunused-value] vibsbars.c: In function 'Nlm_LoadBarData': vibsbars.c:429:3: warning: statement with no effect [-Wunused-value] mv vibsbars.o vibsbars.glo mv vibsbars.tmp vibsbars.o mv vibslate.o vibslate.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibslate.c vibslate.c: In function 'Nlm_LoadSlateData': vibslate.c:247:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetSlateData': vibslate.c:260:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetSlateData': vibslate.c:277:7: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_LoadPanelData': vibslate.c:305:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetPanelData': vibslate.c:317:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetPanelData': vibslate.c:329:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_LoadDisplayData': vibslate.c:351:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetDisplayData': vibslate.c:364:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetDisplayData': vibslate.c:381:7: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SetPanelExtra': vibslate.c:407:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_GetPanelExtra': vibslate.c:430:5: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SlateVertScrollAction': vibslate.c:1003:11: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_EnableSlate': vibslate.c:1199:18: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_DisableSlate': vibslate.c:1254:18: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_SelectSlate': vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat] vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_SelectPanel': vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat] vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_GetPanelOffset': vibslate.c:1624:7: warning: statement with no effect [-Wunused-value] vibslate.c: In function 'Nlm_SlateClick': vibslate.c:2026:20: warning: variable 'h' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_SlateClickCallback': vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat] vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_SlateInputCallback': vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat] vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_SlateDrawCallback': vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat] vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat] vibslate.c: In function 'Nlm_Set3DColorMap': vibslate.c:2686:17: warning: unused variable 'testvisual' [-Wunused-variable] vibslate.c:2685:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable] vibslate.c: In function 'Nlm_RegisterRow': vibslate.c:3400:9: warning: statement with no effect [-Wunused-value] vibslate.c:3410:13: warning: statement with no effect [-Wunused-value] vibslate.c:3426:7: warning: statement with no effect [-Wunused-value] vibslate.c:3454:7: warning: statement with no effect [-Wunused-value] mv vibslate.o vibslate.glo mv vibslate.tmp vibslate.o mv vibtexts.o vibtexts.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibtexts.c vibtexts.c: In function 'Nlm_LoadTextData': vibtexts.c:154:5: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_SetTextData': vibtexts.c:167:5: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_GetTextData': vibtexts.c:184:7: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_SetPassword': vibtexts.c:312:7: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_GetPassword': vibtexts.c:324:7: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_GetPasswordLength': vibtexts.c:333:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_TextCallback': vibtexts.c:2982:24: warning: unused variable 'cbs' [-Wunused-variable] vibtexts.c: In function 'Nlm_LoseFocusCallback': vibtexts.c:2999:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_TabCallback': vibtexts.c:3109:15: warning: variable 'event' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_HiddenReturnCallback': vibtexts.c:3122:15: warning: variable 'event' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_HiddenActivateCallback': vibtexts.c:3135:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable] vibtexts.c: In function 'Nlm_NewDialogText': vibtexts.c:3229:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewPasswordText': vibtexts.c:3338:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewHiddenText': vibtexts.c:3456:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewSpecialText': vibtexts.c:3582:3: warning: statement with no effect [-Wunused-value] vibtexts.c: In function 'Nlm_NewScrollText': vibtexts.c:3756:5: warning: statement with no effect [-Wunused-value] mv vibtexts.o vibtexts.glo mv vibtexts.tmp vibtexts.o mv vibutils.o vibutils.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibutils.c vibutils.c: In function 'Nlm_SetString': vibutils.c:506:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetString': vibutils.c:526:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_LinkIn': vibutils.c:2385:5: warning: statement with no effect [-Wunused-value] vibutils.c:2389:7: warning: statement with no effect [-Wunused-value] vibutils.c:2392:7: warning: statement with no effect [-Wunused-value] vibutils.c:2401:7: warning: statement with no effect [-Wunused-value] vibutils.c:2404:7: warning: statement with no effect [-Wunused-value] vibutils.c:2409:7: warning: statement with no effect [-Wunused-value] vibutils.c:2416:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_LoadGraphicData': vibutils.c:2462:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_LoadBoxData': vibutils.c:2492:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_RemoveLink': vibutils.c:2578:11: warning: statement with no effect [-Wunused-value] vibutils.c:2586:3: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_SetGraphicData': vibutils.c:2922:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetGraphicData': vibutils.c:2939:7: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_SetBoxData': vibutils.c:2954:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetBoxData': vibutils.c:2971:7: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_SetExtraData': vibutils.c:2996:5: warning: statement with no effect [-Wunused-value] vibutils.c: In function 'Nlm_GetExtraData': vibutils.c:3018:5: warning: statement with no effect [-Wunused-value] mv vibutils.o vibutils.glo mv vibutils.tmp vibutils.o mv vibwndws.o vibwndws.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibwndws.c vibwndws.c: In function 'Nlm_LoadWindowData': vibwndws.c:411:5: warning: statement with no effect [-Wunused-value] vibwndws.c: In function 'Nlm_SetWindowData': vibwndws.c:424:5: warning: statement with no effect [-Wunused-value] vibwndws.c: In function 'Nlm_GetWindowData': vibwndws.c:441:7: warning: statement with no effect [-Wunused-value] vibwndws.c: In function 'Nlm_SetColorMap': vibwndws.c:1060:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_SetWindowTitle': vibwndws.c:1567:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_GetWindowTitle': vibwndws.c:1610:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_NewWindow': vibwndws.c:2155:19: warning: variable 'screen_num' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_HideWindow': vibwndws.c:2526:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_ShowNormal': vibwndws.c:2969:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_ShowModal': vibwndws.c:3014:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_ShowDocument': vibwndws.c:3060:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: In function 'Nlm_VibMainPrelude': vibwndws.c:6771:13: warning: unused variable 'retval' [-Wunused-variable] vibwndws.c: In function 'Nlm_RemoveDyingWindows': vibwndws.c:6893:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] vibwndws.c: At top level: vibwndws.c:1318:16: warning: 'Nlm_StandardColormap' defined but not used [-Wunused-function] mv vibwndws.o vibwndws.glo mv vibwndws.tmp vibwndws.o mv vibmain.o vibmain.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmain.c vibmain.c:121:1: warning: return type defaults to 'int' [-Wreturn-type] mv vibmain.o vibmain.glo mv vibmain.tmp vibmain.o mv ncbidraw.o ncbidraw.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL ncbidraw.c ncbidraw.c: In function 'Nlm_SetFontData': ncbidraw.c:489:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_GetFontData': ncbidraw.c:501:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_FindFont': ncbidraw.c:2234:7: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_ReuseFont': ncbidraw.c:2252:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_GetFontSpec': ncbidraw.c:2860:5: warning: statement with no effect [-Wunused-value] ncbidraw.c:2867:5: warning: statement with no effect [-Wunused-value] ncbidraw.c: In function 'Nlm_AssignPrinterFont': ncbidraw.c:2928:5: warning: statement with no effect [-Wunused-value] mv ncbidraw.o ncbidraw.glo mv ncbidraw.tmp ncbidraw.o mv drawing.o drawing.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL drawing.c mv drawing.o drawing.glo mv drawing.tmp drawing.o mv mapping.o mapping.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL mapping.c mapping.c: In function 'Nlm_MapRectToWorldBox': mapping.c:139:8: warning: variable 'curScale' set but not used [-Wunused-but-set-variable] mv mapping.o mapping.glo mv mapping.tmp mapping.o mv picture.o picture.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL picture.c mv picture.o picture.glo mv picture.tmp picture.o mv viewer.o viewer.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer.c mv viewer.o viewer.glo mv viewer.tmp viewer.o mv document.o document.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL document.c document.c: In function 'Nlm_PrintDocument': document.c:4413:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] document.c:4417:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] mv document.o document.glo mv document.tmp document.o mv table.o table.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL table.c table.c: In function 'SetCellRec': table.c:136:9: warning: statement with no effect [-Wunused-value] table.c:138:7: warning: statement with no effect [-Wunused-value] table.c: In function 'GetCellRec': table.c:175:9: warning: statement with no effect [-Wunused-value] table.c:177:7: warning: statement with no effect [-Wunused-value] table.c: In function 'GetColRec': table.c:231:7: warning: statement with no effect [-Wunused-value] table.c: In function 'DrawTable': table.c:314:9: warning: statement with no effect [-Wunused-value] table.c:317:5: warning: statement with no effect [-Wunused-value] table.c:318:5: warning: statement with no effect [-Wunused-value] table.c:319:5: warning: statement with no effect [-Wunused-value] table.c:334:5: warning: statement with no effect [-Wunused-value] table.c: In function 'RecordColumn': table.c:380:5: warning: statement with no effect [-Wunused-value] table.c: In function 'RecordSegment': table.c:428:7: warning: statement with no effect [-Wunused-value] table.c:440:9: warning: statement with no effect [-Wunused-value] table.c:442:7: warning: statement with no effect [-Wunused-value] table.c: In function 'CopyToHandle': table.c:510:7: warning: statement with no effect [-Wunused-value] table.c:518:7: warning: statement with no effect [-Wunused-value] table.c:527:7: warning: statement with no effect [-Wunused-value] table.c: In function 'AppendTableText': table.c:632:7: warning: statement with no effect [-Wunused-value] table.c: In function 'GetTableText': table.c:710:13: warning: statement with no effect [-Wunused-value] table.c:718:11: warning: statement with no effect [-Wunused-value] table.c:727:9: warning: statement with no effect [-Wunused-value] table.c:743:7: warning: statement with no effect [-Wunused-value] table.c: In function 'TableTextLength': table.c:783:13: warning: statement with no effect [-Wunused-value] table.c:791:11: warning: statement with no effect [-Wunused-value] table.c:800:9: warning: statement with no effect [-Wunused-value] table.c: In function 'ResetTable': table.c:1090:5: warning: statement with no effect [-Wunused-value] mv table.o table.glo mv table.tmp table.o mv palette.o palette.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL palette.c palette.c: In function 'DrawPalette': palette.c:116:5: warning: statement with no effect [-Wunused-value] palette.c: In function 'AppendPalette': palette.c:161:5: warning: statement with no effect [-Wunused-value] palette.c: In function 'SetPaletteValue': palette.c:216:7: warning: statement with no effect [-Wunused-value] palette.c: In function 'GetPaletteValue': palette.c:240:7: warning: statement with no effect [-Wunused-value] palette.c: In function 'PaletteClick': palette.c:306:7: warning: statement with no effect [-Wunused-value] mv palette.o palette.glo mv palette.tmp palette.o mv diagnost.o diagnost.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL diagnost.c mv diagnost.o diagnost.glo mv diagnost.tmp diagnost.o mv image.o image.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL image.c image.c: In function 'Nlm_AllocateImage': image.c:207:28: warning: statement with no effect [-Wunused-value] image.c:274:3: warning: statement with no effect [-Wunused-value] image.c: In function 'Nlm_DeleteImage': image.c:691:9: warning: statement with no effect [-Wunused-value] image.c: In function 'Nlm_UnlockPixMapImage': image.c:804:7: warning: statement with no effect [-Wunused-value] image.c: In function 'ShiftXMask': image.c:840:9: warning: suggest parentheses around '+' inside '>>' [-Wparentheses] mv image.o image.glo mv image.tmp image.o mv pictur3d.o pictur3d.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL pictur3d.c mv pictur3d.o pictur3d.glo mv pictur3d.tmp pictur3d.o mv prim3d1.o prim3d1.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d1.c mv prim3d1.o prim3d1.glo mv prim3d1.tmp prim3d1.o mv prim3d2.o prim3d2.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d2.c mv prim3d2.o prim3d2.glo mv prim3d2.tmp prim3d2.o mv prim3d3.o prim3d3.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d3.c mv prim3d3.o prim3d3.glo mv prim3d3.tmp prim3d3.o mv prim3d4.o prim3d4.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d4.c mv prim3d4.o prim3d4.glo mv prim3d4.tmp prim3d4.o mv prim3d5.o prim3d5.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d5.c mv prim3d5.o prim3d5.glo mv prim3d5.tmp prim3d5.o mv viewer3d.o viewer3d.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer3d.c viewer3d.c: In function 'DrawViewer3D': viewer3d.c:521:7: warning: statement with no effect [-Wunused-value] viewer3d.c: In function 'Nlm_RedrawPrim3D': viewer3d.c:995:3: warning: statement with no effect [-Wunused-value] mv viewer3d.o viewer3d.glo mv viewer3d.tmp viewer3d.o mv vibmouse.o vibmouse.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmouse.c mv vibmouse.o vibmouse.glo mv vibmouse.tmp vibmouse.o mv netscape.o netscape.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL netscape.c netscape.c: In function 'NS_Obtain_lock': netscape.c:236:10: warning: variable 'waited' set but not used [-Wunused-but-set-variable] mv netscape.o netscape.glo mv netscape.tmp netscape.o mv imagelst.o imagelst.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL imagelst.c mv imagelst.o imagelst.glo mv imagelst.tmp imagelst.o mv treeview.o treeview.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL treeview.c mv treeview.o treeview.glo mv treeview.tmp treeview.o mv shim3d.o shim3d.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL shim3d.c shim3d.c: In function 'OGL_AddCylinder3D': shim3d.c:906:14: warning: unused variable 'iCount' [-Wunused-variable] shim3d.c: In function 'OGL_AddText3D': shim3d.c:1198:22: warning: unused variable 'i' [-Wunused-variable] shim3d.c: In function 'OGL_Zoom_DragMA': shim3d.c:1758:16: warning: unused variable 'OGL_Data' [-Wunused-variable] shim3d.c: In function 'OGL_Hit': shim3d.c:2053:17: warning: left shift count >= width of type [enabled by default] shim3d.c: In function 'write_row_callback': shim3d.c:2911:48: warning: 'end' may be used uninitialized in this function [-Wuninitialized] shim3d.c:2911:48: warning: 'start' may be used uninitialized in this function [-Wuninitialized] shim3d.c: In function 'SetOGLFont': shim3d.c:2369:64: warning: 'closest' may be used uninitialized in this function [-Wuninitialized] shim3d.c:2364:37: warning: 'mindiff' may be used uninitialized in this function [-Wuninitialized] shim3d.c:2357:21: warning: 'list' may be used uninitialized in this function [-Wuninitialized] shim3d.c: In function 'Nlm_AddHalfWorm3D': shim3d.c:3673:31: warning: 'pCz' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3673:31: warning: 'pCy' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3673:31: warning: 'pCx' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3672:31: warning: 'pNz' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3672:31: warning: 'pNy' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3672:31: warning: 'pNx' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3703:48: warning: 'Cz' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3703:41: warning: 'Cy' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3703:34: warning: 'Cx' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3670:48: warning: 'Nz' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3670:41: warning: 'Ny' may be used uninitialized in this function [-Wuninitialized] shim3d.c:3434:6: warning: 'offset' may be used uninitialized in this function [-Wuninitialized] mv shim3d.o shim3d.glo mv shim3d.tmp shim3d.o mv odlbox.o odlbox.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL odlbox.c odlbox.c: In function 'LB_onVScroll': odlbox.c:424:12: warning: variable 'IsGoUp' set but not used [-Wunused-but-set-variable] mv odlbox.o odlbox.glo mv odlbox.tmp odlbox.o rm -f libvibrantOGL.a ar cru libvibrantOGL.a vibbutns.glo vibextra.glo vibfiles.glo vibforms.glo vibgroup.glo viblists.glo vibmenus.glo vibprmpt.glo vibsbars.glo vibslate.glo vibtexts.glo vibutils.glo vibwndws.glo vibmain.glo ncbidraw.glo drawing.glo mapping.glo picture.glo viewer.glo document.glo table.glo palette.glo diagnost.glo image.glo pictur3d.glo prim3d1.glo prim3d2.glo prim3d3.glo prim3d4.glo prim3d5.glo viewer3d.glo vibmouse.glo netscape.glo imagelst.glo treeview.glo shim3d.glo odlbox.glo cp -p libvibrantOGL.a ../lib ranlib ../lib/libvibrantOGL.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF accentr.c accentr.c: In function 'EntrezBiostrucGet': accentr.c:2113:17: warning: unused variable 'retval' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF accutils.c rm -f libncbiacc.a ar cru libncbiacc.a accentr.o accutils.o cp -p libncbiacc.a ../lib ranlib ../lib/libncbiacc.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF drawseq.c drawseq.c: In function 'AddFlatNodeSymbol': drawseq.c:811:7: warning: unused variable 'symbol_height' [-Wunused-variable] drawseq.c: In function 'AddAlignBlocks': drawseq.c:970:7: warning: variable 'c_num' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'AddAlignFeature': drawseq.c:1369:8: warning: unused variable 'ptype' [-Wunused-variable] drawseq.c: In function 'AddAlignmentMismatch': drawseq.c:1523:7: warning: variable 'i_right' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'DrawRestrictionMap': drawseq.c:1811:10: warning: unused variable 'retval' [-Wunused-variable] drawseq.c:1802:15: warning: variable 'center' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'DrawFeatures': drawseq.c:2563:7: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'DrawOneSeqLoc': drawseq.c:3020:10: warning: variable 'show_seq_label' set but not used [-Wunused-but-set-variable] drawseq.c:3009:10: warning: variable 'ends' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'Label_GData': drawseq.c:3439:10: warning: variable 'success' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'DrawEquivAlign': drawseq.c:3594:8: warning: unused variable 'my_gray_color' [-Wunused-variable] drawseq.c: In function 'load_align_label_rectangle': drawseq.c:4352:10: warning: variable 'found_it' set but not used [-Wunused-but-set-variable] drawseq.c: In function 'PicForAlignNode': drawseq.c:4558:18: warning: variable 'min_scale' set but not used [-Wunused-but-set-variable] drawseq.c: At top level: drawseq.c:3511:18: warning: 'get_map_pos' defined but not used [-Wunused-function] drawseq.c:3525:22: warning: 'get_ith_arp' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF dotmatrx.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF fea2seg.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF fstyle.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF smdlg1.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF smdlg2.c smdlg2.c: In function 'Nlm_CreateDlgGroup': smdlg2.c:631:12: warning: variable 'toAlign' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF smdlg3.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF smtools.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF styleman.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF stylemui.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF glbpic.c glbpic.c: In function 'label_linear_mark': glbpic.c:1295:7: warning: unused variable 'tick_len' [-Wunused-variable] glbpic.c: In function 'add_alignment_to_global': glbpic.c:1552:8: warning: variable 'p_val' set but not used [-Wunused-but-set-variable] glbpic.c: At top level: glbpic.c:584:19: warning: 'extract_align_range' defined but not used [-Wunused-function] glbpic.c:1748:16: warning: 'get_print_score' defined but not used [-Wunused-function] glbpic.c: In function 'get_circle_label_align': glbpic.c:2349:2: warning: 'align' may be used uninitialized in this function [-Wuninitialized] glbpic.c: In function 'label_circle_mark': glbpic.c:2470:7: warning: 'first_align' may be used uninitialized in this function [-Wuninitialized] glbpic.c:2441:6: warning: 'p_align' may be used uninitialized in this function [-Wuninitialized] glbpic.c:2483:11: warning: 'first_left' may be used uninitialized in this function [-Wuninitialized] glbpic.c:2469:28: warning: 'first_width' may be used uninitialized in this function [-Wuninitialized] glbpic.c:2473:10: warning: 'first_top' may be used uninitialized in this function [-Wuninitialized] glbpic.c: In function 'add_alignment_to_global': glbpic.c:1739:16: warning: 'g_top' may be used uninitialized in this function [-Wuninitialized] glbpic.c: In function 'Draw_Global': glbpic.c:2177:12: warning: 'seglen' may be used uninitialized in this function [-Wuninitialized] glbpic.c:1943:8: note: 'seglen' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF layout.c layout.c: In function 'LayoutNodeFlat': layout.c:326:24: warning: variable 'prev' set but not used [-Wunused-but-set-variable] layout.c: In function 'layout_uncompressed_group': layout.c:1244:20: warning: variable 'group_stop' set but not used [-Wunused-but-set-variable] layout.c: In function 'LayoutFeatNode': layout.c:1365:17: warning: variable 'y_next' set but not used [-Wunused-but-set-variable] layout.c:1364:17: warning: variable 'labelstyle' set but not used [-Wunused-but-set-variable] layout.c:1363:10: warning: variable 'show_trunc' set but not used [-Wunused-but-set-variable] layout.c:1350:10: warning: variable 'k' set but not used [-Wunused-but-set-variable] layout.c: In function 'LayoutAlignNode': layout.c:2208:7: warning: unused variable 'num' [-Wunused-variable] layout.c: At top level: layout.c:1779:16: warning: 'modify_master_line' defined but not used [-Wunused-function] layout.c: In function 'layout_uncompressed_group': layout.c:1321:14: warning: 'c_fnp' may be used uninitialized in this function [-Wuninitialized] layout.c: In function 'GroupFeatNode': layout.c:636:14: warning: 'prev' may be used uninitialized in this function [-Wuninitialized] layout.c:594:35: note: 'prev' was declared here layout.c: In function 'OrderCdsmRNA': layout.c:963:9: warning: 'm_missed' may be used uninitialized in this function [-Wuninitialized] layout.c:940:15: note: 'm_missed' was declared here layout.c: In function 'LayoutFeatNode': layout.c:1447:7: warning: 'p_right' may be used uninitialized in this function [-Wuninitialized] layout.c:1502:11: warning: 'p_left' may be used uninitialized in this function [-Wuninitialized] layout.c:1461:15: warning: 'height' may be used uninitialized in this function [-Wuninitialized] layout.c: In function 'LayoutAlignNode': layout.c:2215:17: warning: 'next_line' may be used uninitialized in this function [-Wuninitialized] layout.c:2317:27: warning: 'cur_line' may be used uninitialized in this function [-Wuninitialized] layout.c:2248:7: warning: 'next' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF saldist.c saldist.c: In function 'copy_string': saldist.c:1289:12: warning: value computed is not used [-Wunused-value] saldist.c:1302:11: warning: value computed is not used [-Wunused-value] saldist.c: In function 'nss_ref_complength': saldist.c:1479:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] saldist.c:1455:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable] saldist.c:1455:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable] saldist.c: In function 'nss_pw_complength': saldist.c:1572:18: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] saldist.c:1547:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable] saldist.c:1547:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable] saldist.c: In function 'nss_gp_complength': saldist.c:1675:21: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] saldist.c:1640:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable] saldist.c:1640:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable] saldist.c: In function 'SortbySimProc': saldist.c:2139:31: warning: variable 'newsalpd' set but not used [-Wunused-but-set-variable] saldist.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] saldist.c:910:14: warning: 'matrixlst' defined but not used [-Wunused-variable] saldist.c:928:16: warning: 'new_matrice' defined but not used [-Wunused-function] saldist.c:999:13: warning: 'AAcode' defined but not used [-Wunused-function] saldist.c:1080:24: warning: 'FloatLomatrix' defined but not used [-Wunused-function] saldist.c:1853:22: warning: 'scangp_calcul' defined but not used [-Wunused-function] saldist.c: In function 'writematrixhalf.constprop.5': saldist.c:1225:18: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized] saldist.c: In function 'PwDistProc': saldist.c:1151:18: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized] saldist.c:1104:19: note: 'vnp' was declared here saldist.c: In function 'SortbyLenItem': saldist.c:2191:14: warning: 'mink' may be used uninitialized in this function [-Wuninitialized] saldist.c:2172:28: note: 'mink' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF saled.c ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF salfiles.c salfiles.c: In function 'NewFastaRead': salfiles.c:315:30: warning: variable 'lastsegsip' set but not used [-Wunused-but-set-variable] salfiles.c: In function 'ReadAlignmentToStrings': salfiles.c:664:16: warning: unused variable 'nseq' [-Wunused-variable] salfiles.c: In function 'MacawRead': salfiles.c:1257:15: warning: unused variable 'vnp' [-Wunused-variable] salfiles.c: In function 'ReadLocalAlign': salfiles.c:1370:14: warning: variable 'tmp1' set but not used [-Wunused-but-set-variable] salfiles.c: In function 'ImportFromFile': salfiles.c:2072:20: warning: unused variable 'sep' [-Wunused-variable] salfiles.c:2071:20: warning: unused variable 'sap' [-Wunused-variable] salfiles.c: In function 'sesp_to_pept': salfiles.c:2713:18: warning: unused variable 'bufferPtr' [-Wunused-variable] salfiles.c: In function 'SaveFeatProc': salfiles.c:3387:22: warning: variable 'handled' set but not used [-Wunused-but-set-variable] salfiles.c: In function 'CCReadAnythingLoop': salfiles.c:3685:16: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] salfiles.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] salfiles.c:501:19: warning: 'get_lens_fromseqalign' defined but not used [-Wunused-function] salfiles.c: In function 'CCDownloadProc': salfiles.c:2363:9: warning: 'new_sep' may be used uninitialized in this function [-Wuninitialized] salfiles.c: In function 'NewFastaRead.constprop.15': salfiles.c:460:6: warning: 'sip' may be used uninitialized in this function [-Wuninitialized] salfiles.c: In function 'GapFastaRead': salfiles.c:747:25: warning: 'seqstr' may be used uninitialized in this function [-Wuninitialized] salfiles.c:654:16: note: 'seqstr' was declared here salfiles.c:724:15: warning: 'startp' may be used uninitialized in this function [-Wuninitialized] salfiles.c:660:16: note: 'startp' was declared here salfiles.c: In function 'ReadLocalAlignment': salfiles.c:1284:10: warning: 'seqvnp' may be used uninitialized in this function [-Wuninitialized] salfiles.c:1113:19: note: 'seqvnp' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF salpanel.c salpanel.c: In function 'go_to_next_to_draw': salpanel.c:330:17: warning: statement with no effect [-Wunused-value] salpanel.c: In function 'next_to_draw': salpanel.c:470:20: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] salpanel.c: In function 'AssociatePropagatedSubloc': salpanel.c:3130:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] salpanel.c: In function 'FeaturePropagateForm': salpanel.c:4577:15: warning: variable 'ppt' set but not used [-Wunused-but-set-variable] salpanel.c:4572:15: warning: variable 'b' set but not used [-Wunused-but-set-variable] salpanel.c: In function 'OkToContinueWithFeatureApply': salpanel.c:6006:14: warning: unused variable 'num_missing' [-Wunused-variable] salpanel.c: In function 'DoApplyFeatureToAlignment': salpanel.c:6122:31: warning: unused variable 'found_null' [-Wunused-variable] salpanel.c: In function 'ApplyFeatureToAlignment': salpanel.c:6324:31: warning: variable 'b' set but not used [-Wunused-but-set-variable] salpanel.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] salpanel.c:64:14: warning: 'diamondSym' defined but not used [-Wunused-variable] salpanel.c:67:14: warning: 'ovalSym' defined but not used [-Wunused-variable] salpanel.c:76:14: warning: 'upTriSym' defined but not used [-Wunused-variable] salpanel.c:79:14: warning: 'downTriSym' defined but not used [-Wunused-variable] salpanel.c:85:14: warning: 'diamondFillSym' defined but not used [-Wunused-variable] salpanel.c:88:14: warning: 'ovalFillSym' defined but not used [-Wunused-variable] salpanel.c:97:14: warning: 'upTriFillSym' defined but not used [-Wunused-variable] salpanel.c:100:14: warning: 'downTriFillSym' defined but not used [-Wunused-variable] salpanel.c:103:14: warning: 'rightOvalSym' defined but not used [-Wunused-variable] salpanel.c:106:14: warning: 'leftOvalSym' defined but not used [-Wunused-variable] salpanel.c:109:14: warning: 'rightOvalFillSym' defined but not used [-Wunused-variable] salpanel.c:112:14: warning: 'leftOvalFillSym' defined but not used [-Wunused-variable] salpanel.c:223:13: warning: 'get_client_rectxy' defined but not used [-Wunused-function] salpanel.c:4962:13: warning: 'BatchApplyFeatureDetailsMessage' defined but not used [-Wunused-function] salpanel.c: In function 'draw_feat.isra.22.part.23': salpanel.c:2182:13: warning: 'col1' may be used uninitialized in this function [-Wuninitialized] salpanel.c: In function 'on_draw': salpanel.c:2598:31: warning: 'draw_diff' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF salparam.c salparam.c: In function 'mergelst': salparam.c:1325:20: warning: variable 'val' set but not used [-Wunused-but-set-variable] salparam.c: In function 'unmergelst': salparam.c:1340:20: warning: variable 'dbdp' set but not used [-Wunused-but-set-variable] salparam.c: In function 'FormulaDialog': salparam.c:1398:36: warning: variable 'b5' set but not used [-Wunused-but-set-variable] salparam.c: In function 'JK_NTPattern2Ex': salparam.c:1596:19: warning: variable 'debug_str' set but not used [-Wunused-but-set-variable] salparam.c: In function 'DotPlotBtn': salparam.c:1936:22: warning: variable 'status' set but not used [-Wunused-but-set-variable] salparam.c: In function 'DotPlotDialog': salparam.c:1973:20: warning: variable 'bt1' set but not used [-Wunused-but-set-variable] salparam.c: In function 'DotPlotItem': salparam.c:2004:22: warning: variable 'status' set but not used [-Wunused-but-set-variable] salparam.c: In function 'SelectSeqFunc': salparam.c:2308:20: warning: variable 'str' set but not used [-Wunused-but-set-variable] salparam.c: In function 'HighlightSelectionFunc': salparam.c:2344:22: warning: variable 'wdp' set but not used [-Wunused-but-set-variable] salparam.c: In function 'PropagateFeatureProc': salparam.c:2623:25: warning: variable 'iID' set but not used [-Wunused-but-set-variable] salparam.c:2614:20: warning: variable 'salp' set but not used [-Wunused-but-set-variable] salparam.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] salparam.c: In function 'FileInProc': salparam.c:782:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] salparam.c: In function 'DotPlotBtn': salparam.c:1950:25: warning: 'sep' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF salsa.c salsa.c: In function 'SelectSubsProc': salsa.c:2140:23: warning: variable 'svpp' set but not used [-Wunused-but-set-variable] salsa.c: In function 'SetSeqInfo': salsa.c:3195:17: warning: unused variable 'vnp' [-Wunused-variable] salsa.c: In function 'SetupAlignDataSap': salsa.c:3410:16: warning: variable 'entityID_sap' set but not used [-Wunused-but-set-variable] salsa.c: In function 'get_bestpos_formerge': salsa.c:4304:17: warning: variable 'insert_after' set but not used [-Wunused-but-set-variable] salsa.c:4303:17: warning: variable 'insert_before' set but not used [-Wunused-but-set-variable] salsa.c: In function 'CreateSeqAlignViewForm': salsa.c:4689:22: warning: variable 'mergebtn' set but not used [-Wunused-but-set-variable] salsa.c: In function 'AlgEditFunc': salsa.c:4988:23: warning: unused variable 'wdp' [-Wunused-variable] salsa.c:4986:23: warning: unused variable 'w' [-Wunused-variable] salsa.c: In function 'OldAlignmentEditor': salsa.c:5118:16: warning: variable 'rval' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAnnotAlignEditor': salsa.c:5305:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAlignEditor': salsa.c:5322:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAlignViewer': salsa.c:5339:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAlignEditorFromDesktop': salsa.c:5354:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAlignEditorFromDesktop2': salsa.c:5371:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAlignEditorFromDesktop3': salsa.c:5390:20: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] salsa.c: In function 'LaunchAlignEditorFromDesktop4': salsa.c:5417:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable] salsa.c: In function 'InsertSeqProc': salsa.c:5587:17: warning: variable 'cnclbt' set but not used [-Wunused-but-set-variable] salsa.c:5585:10: warning: variable 'insprt' set but not used [-Wunused-but-set-variable] salsa.c: In function 'SeqAlignBestHit': salsa.c:5654:22: warning: variable 'last' set but not used [-Wunused-but-set-variable] salsa.c: In function 'SeqAlignStartUpdate': salsa.c:5839:22: warning: variable 'k' set but not used [-Wunused-but-set-variable] salsa.c:5838:15: warning: variable 'start' set but not used [-Wunused-but-set-variable] salsa.c:5837:15: warning: variable 'len_sum' set but not used [-Wunused-but-set-variable] salsa.c:5834:15: warning: variable 'lenp' set but not used [-Wunused-but-set-variable] salsa.c:5833:15: warning: variable 'pre' set but not used [-Wunused-but-set-variable] salsa.c: In function 'CCNormalizeSeqAlignId': salsa.c:6788:23: warning: unused variable 'gi' [-Wunused-variable] salsa.c:6787:17: warning: unused variable 'missing_fmt' [-Wunused-variable] salsa.c:6786:17: warning: unused variable 'missing_cont_fmt' [-Wunused-variable] salsa.c: In function 'ValidateSeqAlignandACCEx': salsa.c:7145:16: warning: variable 'ans' set but not used [-Wunused-but-set-variable] salsa.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/salprop.h:50:16: warning: 'GBFeat' defined but not used [-Wunused-variable] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] salsa.c:87:13: warning: 'InsertSequenceDlg' declared 'static' but never defined [-Wunused-function] salsa.c:1760:13: warning: 'AcceptCloseWindowButton' defined but not used [-Wunused-function] salsa.c:2356:13: warning: 'MakeCdRgnProc' defined but not used [-Wunused-function] salsa.c:2360:13: warning: 'MakeCdRgnrProc' defined but not used [-Wunused-function] salsa.c:4884:16: warning: 'DeltaLitOnly' defined but not used [-Wunused-function] salsa.c:6021:13: warning: 'SWPrintFarpointerAln' defined but not used [-Wunused-function] salsa.c: In function 'ExportFASTAForUnselectedUpdates': salsa.c:6417:13: warning: 'fp' may be used uninitialized in this function [-Wuninitialized] salsa.c: In function 'ExportBadAlignments': salsa.c:6390:13: warning: 'fp' may be used uninitialized in this function [-Wuninitialized] salsa.c: In function 'SeqAlignBestHit.isra.3': salsa.c:5795:23: warning: 'nctr' may be used uninitialized in this function [-Wuninitialized] salsa.c:5797:24: warning: 'end' may be used uninitialized in this function [-Wuninitialized] salsa.c:5797:24: warning: 'beg' may be used uninitialized in this function [-Wuninitialized] salsa.c: In function 'BioseqEditMsgFunc': salsa.c:912:51: warning: 'anp' may be used uninitialized in this function [-Wuninitialized] salsa.c:890:20: note: 'anp' was declared here salsa.c: In function 'DeleteProc': salsa.c:1945:14: warning: 'sap' may be used uninitialized in this function [-Wuninitialized] salsa.c: In function 'SkipThisWindowProc': salsa.c:4591:23: warning: 'salp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF seqfltr.c seqfltr.c: In function 'FilterSeq': seqfltr.c:259:21: warning: 'fptr' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF seqgraph.c seqgraph.c: In function 'EndPointDialogToEndPointValNode': seqgraph.c:140:3: warning: 'eplist' may be used uninitialized in this function [-Wuninitialized] seqgraph.c: In function 'SeqLocGraphViewProc': seqgraph.c:1136:9: warning: 'eplist' may be used uninitialized in this function [-Wuninitialized] seqgraph.c: In function 'MarkPrims': seqgraph.c:911:11: warning: 'fval' may be used uninitialized in this function [-Wuninitialized] seqgraph.c: In function 'CutOffProc': seqgraph.c:1018:9: warning: 'eplist' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF seqgrphx.c seqgrphx.c:28:25: warning: 'MatrixMsgFunc' defined but not used [-Wunused-function] seqgrphx.c: In function 'FilterMsgFunc': seqgrphx.c:224:12: warning: 's' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF seqmtrx.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF seqpcc.c seqpcc.c: In function 'PCCProc': seqpcc.c:229:6: warning: 'pbsp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF seqanal.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF aacomp.c aacomp.c:86:20: warning: 'AACGraph' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF seqscrl.c seqscrl.c: In function 'SeqScrollDataFree': seqscrl.c:46:5: warning: value computed is not used [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF valdlg.c valdlg.c: In function 'ClickRulesDoc': valdlg.c:373:22: warning: unused variable 'scroll_pos' [-Wunused-variable] valdlg.c:372:22: warning: unused variable 'sb_vert' [-Wunused-variable] valdlg.c: In function 'UpdateRuleList': valdlg.c:479:26: warning: unused variable 'last_cr' [-Wunused-variable] valdlg.c: In function 'SaveRuleChanges': valdlg.c:540:23: warning: variable 'dlg' set but not used [-Wunused-but-set-variable] valdlg.c: In function 'LaunchCommentRulesEditor': valdlg.c:553:23: warning: unused variable 'm' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF vsm.c vsm.c: In function 'VSMAboutProc': vsm.c:1492:8: warning: variable 'p' set but not used [-Wunused-but-set-variable] vsm.c: In function 'VSeqMgrCreateMainWindow': vsm.c:1601:12: warning: variable 'omp' set but not used [-Wunused-but-set-variable] vsm.c: In function 'VSeqMgrPopulateMain': vsm.c:1742:13: warning: variable 'atp' set but not used [-Wunused-but-set-variable] vsm.c: In function 'VSMGatherPictProc': vsm.c:2225:15: warning: variable 'bssp' set but not used [-Wunused-but-set-variable] vsm.c:2220:30: warning: variable 'bottom' set but not used [-Wunused-but-set-variable] vsm.c: In function 'VSMAddPictureToEntity': vsm.c:2853:10: warning: variable 'ptr' set but not used [-Wunused-but-set-variable] vsm.c:2852:13: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF vsmfile.c vsmfile.c: In function 'VSMGenericBinAsnOpen': vsmfile.c:259:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] vsmfile.c: In function 'VSMGenericFastaSave': vsmfile.c:395:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] vsmfile.c: In function 'VSMFastaProtSaveWithProduct': vsmfile.c:527:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] vsmfile.c: In function 'VSMSaveSetsAsFiles': vsmfile.c:1365:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF vsmutil.c vsmutil.c:387:20: warning: 'GetSeqDescGivenIDs' defined but not used [-Wunused-function] vsmutil.c:1567:16: warning: 'MakeFieldReports' defined but not used [-Wunused-function] vsmutil.c: In function 'ContinueProc': vsmutil.c:2100:19: warning: array subscript is above array bounds [-Warray-bounds] vsmutil.c: In function 'SetVerbosityAndRepopulate': vsmutil.c:2141:19: warning: array subscript is above array bounds [-Warray-bounds] vsmutil.c: In function 'RevalidateProc': vsmutil.c:2067:19: warning: array subscript is above array bounds [-Warray-bounds] vsmutil.c: In function 'ClearValidateWindow': vsmutil.c:613:21: warning: array subscript is above array bounds [-Warray-bounds] vsmutil.c: In function 'CreateValidateWindowExExEx': vsmutil.c:2464:23: warning: array subscript is above array bounds [-Warray-bounds] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF udvgraph.c udvgraph.c: In function 'UDV_click_item': udvgraph.c:877:9: warning: unused variable 'IsTransNeeded' [-Wunused-variable] udvgraph.c: In function 'UDV_SendBSPSelectMsg': udvgraph.c:1230:13: warning: variable 'bDeselectAll' set but not used [-Wunused-but-set-variable] udvgraph.c:1226:30: warning: variable 'bsp_coord_old' set but not used [-Wunused-but-set-variable] udvgraph.c: In function 'UDV_draw_helixDNA': udvgraph.c:1827:15: warning: variable 'cyChar_2' set but not used [-Wunused-but-set-variable] udvgraph.c: In function 'draw_logo': udvgraph.c:1940:38: warning: variable 'cyGlobal' set but not used [-Wunused-but-set-variable] udvgraph.c: In function 'UDV_draw_CDS_minus': udvgraph.c:2337:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable] udvgraph.c:2332:5: warning: variable 'numivals2' set but not used [-Wunused-but-set-variable] udvgraph.c: In function 'UDV_draw_CDS_plus': udvgraph.c:2461:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable] udvgraph.c: In function 'UDV_draw_panel': udvgraph.c:4041:21: warning: unused variable 'vnp_seqinfo' [-Wunused-variable] udvgraph.c:4035:45: warning: variable 'nLinesDraw' set but not used [-Wunused-but-set-variable] udvgraph.c:4035:37: warning: variable 'nTotRow' set but not used [-Wunused-but-set-variable] udvgraph.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] udvgraph.c:948:13: warning: 'UDV_draw_vert_cursor' defined but not used [-Wunused-function] udvgraph.c:971:14: warning: 'UDV_draw_horz_cursor' defined but not used [-Wunused-function] udvgraph.c:1298:13: warning: 'UDV_AutoSelectAllSeq' defined but not used [-Wunused-function] udvgraph.c:3433:14: warning: 'UDV_Draw_features_label' defined but not used [-Wunused-function] udvgraph.c:3921:14: warning: 'UDV_calc_decalRC' defined but not used [-Wunused-function] udvgraph.c: In function 'UDV_GetCurrentDispRange': udvgraph.c:638:15: warning: 'pgp' may be used uninitialized in this function [-Wuninitialized] udvgraph.c: In function 'UDV_Draw_features': udvgraph.c:3203:45: warning: 'idx6' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3203:24: warning: 'idx5' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3196:11: warning: 'idx4' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3189:45: warning: 'idx3' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3189:24: warning: 'idx2' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3182:12: warning: 'idx1' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3226:11: warning: 'stop_x2' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3226:11: warning: 'stop_x' may be used uninitialized in this function [-Wuninitialized] udvgraph.c:3226:10: warning: 'y' may be used uninitialized in this function [-Wuninitialized] udvgraph.c: In function 'UDV_ClickProc': udvgraph.c:1461:31: warning: 'vmp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF udvopen.c udvopen.c: In function 'UDV_FileOpen': udvopen.c:875:16: warning: variable 'b2' set but not used [-Wunused-but-set-variable] udvopen.c:875:11: warning: variable 'b' set but not used [-Wunused-but-set-variable] udvopen.c: In function 'UDV_CreateListBioseqDlg': udvopen.c:1180:9: warning: the address of 'szName' will always evaluate as 'true' [-Waddress] udvopen.c: In function 'UDV_FOpenCancelProc': udvopen.c:792:23: warning: 'vmp' may be used uninitialized in this function [-Wuninitialized] udvopen.c: In function 'UDV_analyze_SEP_for_open': udvopen.c:325:15: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized] udvopen.c:327:14: warning: 'dataptr' may be used uninitialized in this function [-Wuninitialized] udvopen.c: In function 'UDV_FOpenAcceptProc': udvopen.c:855:23: warning: 'vmp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF udvpanel.c udvpanel.c: In function 'UDV_GotoBtnProc': udvpanel.c:2080:22: warning: variable 'old_ivalue' set but not used [-Wunused-but-set-variable] udvpanel.c:2079:15: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] udvpanel.c: In function 'CreateMainControls': udvpanel.c:2165:8: warning: variable 'cxChar' set but not used [-Wunused-but-set-variable] udvpanel.c: In function 'UDV_SearchFeatForKey': udvpanel.c:3478:14: warning: variable 'b2' set but not used [-Wunused-but-set-variable] udvpanel.c: At top level: udvpanel.c:2773:28: warning: 'FeaturesListBoxScan' defined but not used [-Wunused-function] udvpanel.c: In function 'InitFeaturesListDlg': udvpanel.c:3301:16: warning: 'pop' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF dotvibrant.c dotvibrant.c: In function 'DOT_DisplayHits': dotvibrant.c:561:18: warning: variable 'ycomp' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_VscrlProc': dotvibrant.c:915:16: warning: variable 'visLines' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_HscrlProc': dotvibrant.c:969:20: warning: variable 'visLines' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_VCrossHairs': dotvibrant.c:1399:10: warning: unused variable 'cursor_size' [-Wunused-variable] dotvibrant.c: In function 'DOT_HCrossHairs': dotvibrant.c:1424:9: warning: unused variable 'cursor_size' [-Wunused-variable] dotvibrant.c: In function 'DOT_MoveCrossHairs': dotvibrant.c:1450:18: warning: variable 'data' set but not used [-Wunused-but-set-variable] dotvibrant.c:1449:10: warning: unused variable 'cursor_size' [-Wunused-variable] dotvibrant.c: In function 'DOT_DrawXAxis': dotvibrant.c:1529:38: warning: unused variable 'title' [-Wunused-variable] dotvibrant.c: In function 'DOT_DrawYAxis': dotvibrant.c:1639:38: warning: unused variable 'title' [-Wunused-variable] dotvibrant.c:1638:55: warning: variable 'Fh_4' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_SVDisplayDiags': dotvibrant.c:1767:28: warning: variable 'aln_diag' set but not used [-Wunused-but-set-variable] dotvibrant.c:1767:22: warning: variable 'diag' set but not used [-Wunused-but-set-variable] dotvibrant.c:1763:22: warning: variable 'width' set but not used [-Wunused-but-set-variable] dotvibrant.c:1762:31: warning: variable 'p_HFrom' set but not used [-Wunused-but-set-variable] dotvibrant.c:1762:22: warning: variable 'p_VFrom' set but not used [-Wunused-but-set-variable] dotvibrant.c:1759:28: warning: unused variable 'cutoff' [-Wunused-variable] dotvibrant.c:1757:34: warning: variable 'seg3' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_FillNewSeqBufs': dotvibrant.c:2194:19: warning: unused variable 'alp' [-Wunused-variable] dotvibrant.c: In function 'DOT_InitCInfo': dotvibrant.c:2255:14: warning: unused variable 'colBuf' [-Wunused-variable] dotvibrant.c: In function 'DOT_SVDisplaySequence': dotvibrant.c:2376:16: warning: variable 'matrix' set but not used [-Wunused-but-set-variable] dotvibrant.c:2364:14: warning: variable 'vis_2' set but not used [-Wunused-but-set-variable] dotvibrant.c:2361:14: warning: unused variable 'prot_threshold' [-Wunused-variable] dotvibrant.c:2347:24: warning: variable 'mip2' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_SVClickProc': dotvibrant.c:2804:17: warning: unused variable 'handled' [-Wunused-variable] dotvibrant.c: In function 'DOT_SVPopulateDiagViewer': dotvibrant.c:2876:11: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat] dotvibrant.c: In function 'DOT_ResizeFeatWindow': dotvibrant.c:3013:63: warning: variable 'SubjectHeight' set but not used [-Wunused-but-set-variable] dotvibrant.c:3013:51: warning: variable 'QueryHeight' set but not used [-Wunused-but-set-variable] dotvibrant.c:3013:37: warning: variable 'gap' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_ResizeSequenceWindow': dotvibrant.c:3095:25: warning: variable 'is_visible2' set but not used [-Wunused-but-set-variable] dotvibrant.c:3095:12: warning: variable 'is_visible1' set but not used [-Wunused-but-set-variable] dotvibrant.c:3092:51: warning: variable 'V1Height' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_HideFeatDlg': dotvibrant.c:3742:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_SVBuildDiagViewer': dotvibrant.c:4028:18: warning: variable 'mip' set but not used [-Wunused-but-set-variable] dotvibrant.c:4026:28: warning: unused variable 'str2' [-Wunused-variable] dotvibrant.c:4026:13: warning: unused variable 'str1' [-Wunused-variable] dotvibrant.c:4019:18: warning: variable 'pr2' set but not used [-Wunused-but-set-variable] dotvibrant.c:4019:13: warning: variable 'pr1' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_UpdateDataRects': dotvibrant.c:4163:19: warning: variable 'dy' set but not used [-Wunused-but-set-variable] dotvibrant.c:4163:15: warning: variable 'dx' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_MsgFunc': dotvibrant.c:4212:17: warning: variable 'vdp2' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_ReleaseProc': dotvibrant.c:4370:32: warning: unused variable 'yaxis_incr' [-Wunused-variable] dotvibrant.c:4370:15: warning: unused variable 'xaxis_incr' [-Wunused-variable] dotvibrant.c:4368:19: warning: variable 'alp' set but not used [-Wunused-but-set-variable] dotvibrant.c:4367:18: warning: variable 'mip1' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_StartDOTPLOT': dotvibrant.c:4888:23: warning: variable 'vdp' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_SetupParamsWindow': dotvibrant.c:4965:5: warning: too many arguments for format [-Wformat-extra-args] dotvibrant.c:4967:5: warning: too many arguments for format [-Wformat-extra-args] dotvibrant.c: In function 'DOT_DoZoom': dotvibrant.c:5103:18: warning: variable 'data' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_ZoomProc': dotvibrant.c:5201:23: warning: variable 'temport' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'AlnMgr2GetNextLine': dotvibrant.c:5312:3: warning: value computed is not used [-Wunused-value] dotvibrant.c: In function 'DOT_GetAlign': dotvibrant.c:5329:44: warning: variable 'n' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_FillAlignInfoPointer': dotvibrant.c:5562:16: warning: unused variable 'i' [-Wunused-variable] dotvibrant.c: In function 'DOT_Prob_FillAlignInfoPointer': dotvibrant.c:5678:16: warning: unused variable 'i' [-Wunused-variable] dotvibrant.c:5677:16: warning: unused variable 'numsaps' [-Wunused-variable] dotvibrant.c:5675:37: warning: unused variable 'sap_tmp' [-Wunused-variable] dotvibrant.c: In function 'DOT_DoBlast': dotvibrant.c:5915:23: warning: unused variable 'eval' [-Wunused-variable] dotvibrant.c:5914:23: warning: variable 'is_local' set but not used [-Wunused-but-set-variable] dotvibrant.c:5912:23: warning: unused variable 'entityID' [-Wunused-variable] dotvibrant.c: In function 'DOT_CreateWindowDetails': dotvibrant.c:6211:27: warning: variable 'pr2' set but not used [-Wunused-but-set-variable] dotvibrant.c:6211:22: warning: variable 'pr1' set but not used [-Wunused-but-set-variable] dotvibrant.c:6204:21: warning: variable 'g1' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_ResizeMainWindow': dotvibrant.c:6270:35: warning: variable 'gap' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'DOT_FindAlignment': dotvibrant.c:6659:29: warning: unused variable 'rb_fixed' [-Wunused-variable] dotvibrant.c:6659:13: warning: unused variable 'lt_fixed' [-Wunused-variable] dotvibrant.c:6658:17: warning: variable 'data' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'SCP_CompareOrderOrganizeBioseqs': dotvibrant.c:6789:25: warning: variable 'itemID' set but not used [-Wunused-but-set-variable] dotvibrant.c: In function 'SCP_OrganizeAlnsInSet': dotvibrant.c:6870:21: warning: variable 'indextype' set but not used [-Wunused-but-set-variable] dotvibrant.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] dotvibrant.c:2757:16: warning: 'DOT_SVGetDiag' defined but not used [-Wunused-function] dotvibrant.c:2951:13: warning: 'DOT_SVChangeLabels' defined but not used [-Wunused-function] dotvibrant.c:3315:13: warning: 'DOT_AddFeatureToSegment' defined but not used [-Wunused-function] dotvibrant.c:3685:13: warning: 'DOT_HideAcceptProc' defined but not used [-Wunused-function] dotvibrant.c:4210:25: warning: 'DOT_MsgFunc' defined but not used [-Wunused-function] dotvibrant.c:4746:13: warning: 'DOT_GetInfoProc' defined but not used [-Wunused-function] dotvibrant.c:4764:13: warning: 'DOT_FeatAnalysisProc' defined but not used [-Wunused-function] dotvibrant.c:5278:16: warning: 'AlnMgr2GetNextLine' defined but not used [-Wunused-function] dotvibrant.c:5322:16: warning: 'DOT_GetAlign' defined but not used [-Wunused-function] dotvibrant.c:5891:16: warning: 'DOT_get_eval' defined but not used [-Wunused-function] dotvibrant.c:6343:13: warning: 'DOT_NewAnalysis' defined but not used [-Wunused-function] dotvibrant.c:6639:16: warning: 'DOT_DeselectPrim' defined but not used [-Wunused-function] dotvibrant.c: In function 'DOT_GetNthSeqFromAlign': dotvibrant.c:5069:11: warning: 'spp' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c: In function 'DOT_SVPopulateSequenceViewer': dotvibrant.c:2608:32: warning: 'strand2' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2377:23: note: 'strand2' was declared here dotvibrant.c:2608:32: warning: 'strand1' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2377:14: note: 'strand1' was declared here dotvibrant.c:2580:37: warning: 'residue_names' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2375:16: note: 'residue_names' was declared here dotvibrant.c:2608:32: warning: 's_pos' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2367:42: note: 's_pos' was declared here dotvibrant.c:2608:32: warning: 'q_pos' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2367:35: note: 'q_pos' was declared here dotvibrant.c:2501:11: warning: 'hit_stop' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2367:25: note: 'hit_stop' was declared here dotvibrant.c:2611:32: warning: 'hit_start' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2367:14: note: 'hit_start' was declared here dotvibrant.c:2500:16: warning: 'buf_len' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2364:21: note: 'buf_len' was declared here dotvibrant.c:2542:18: warning: 'is_na' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2358:27: note: 'is_na' was declared here dotvibrant.c:2500:6: warning: 's' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2354:14: note: 's' was declared here dotvibrant.c:2623:16: warning: 'q' may be used uninitialized in this function [-Wuninitialized] dotvibrant.c:2353:14: note: 'q' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF dlgutil1.c dlgutil1.c: In function 'IsAuthList': dlgutil1.c:2850:8: warning: variable 'len' set but not used [-Wunused-but-set-variable] dlgutil1.c: In function 'TestIntervalEditor': dlgutil1.c:5092:20: warning: variable 'fuzz_to' set but not used [-Wunused-but-set-variable] dlgutil1.c:5091:20: warning: variable 'fuzz_from' set but not used [-Wunused-but-set-variable] dlgutil1.c:5090:41: warning: variable 'fuzz_before' set but not used [-Wunused-but-set-variable] dlgutil1.c: In function 'CreateStandardEditMenu': dlgutil1.c:8963:8: warning: variable 'i' set but not used [-Wunused-but-set-variable] dlgutil1.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] dlgutil1.c:7835:16: warning: 'ParseSpecimenVoucherOk' defined but not used [-Wunused-function] dlgutil1.c:8152:25: warning: 'GetNthNameValuePair' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF dlgutil2.c dlgutil2.c: In function 'CreateImportFields': dlgutil2.c:1400:19: warning: variable 'is_gap' set but not used [-Wunused-but-set-variable] dlgutil2.c: In function 'UpdateTableDisplayDialogScrollBars': dlgutil2.c:3512:11: warning: variable 'y' set but not used [-Wunused-but-set-variable] dlgutil2.c:3512:8: warning: variable 'x' set but not used [-Wunused-but-set-variable] dlgutil2.c: In function 'GetTableDisplayCell': dlgutil2.c:3840:8: warning: variable 'start_row' set but not used [-Wunused-but-set-variable] dlgutil2.c: In function 'NewCreateInferenceDialog': dlgutil2.c:7229:19: warning: variable 'fnt' set but not used [-Wunused-but-set-variable] dlgutil2.c: In function 'ClickableListOnKey': dlgutil2.c:9789:20: warning: variable 'clp' set but not used [-Wunused-but-set-variable] dlgutil2.c: In function 'GetSelectedClickableListText': dlgutil2.c:10423:36: warning: variable 'char_offset' set but not used [-Wunused-but-set-variable] dlgutil2.c: In function 'AutomatchFeatures': dlgutil2.c:13387:36: warning: variable 's3' set but not used [-Wunused-but-set-variable] dlgutil2.c: At top level: dlgutil2.c:1672:16: warning: 'GetNameForFeature' defined but not used [-Wunused-function] dlgutil2.c:8206:13: warning: 'GetCategoryNumFromName' defined but not used [-Wunused-function] dlgutil2.c:9627:13: warning: 'DrawClickableListItem' defined but not used [-Wunused-function] dlgutil2.c:9647:13: warning: 'ClickClickableListItem' defined but not used [-Wunused-function] dlgutil2.c:11542:16: warning: 'ParseMultiListQualOk' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF e2trmlst.c e2trmlst.c: In function 'ReadAFew': e2trmlst.c:2230:61: warning: left-hand operand of comma expression has no effect [-Wunused-value] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF e2docsum.c e2docsum.c: In function 'FormatDocsum': e2docsum.c:1020:5: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Uint4' [-Wformat] e2docsum.c: In function 'FormatCdsSeq': e2docsum.c:1523:22: warning: variable 'gene' set but not used [-Wunused-but-set-variable] e2docsum.c: In function 'FetchSequence': e2docsum.c:1591:16: warning: variable 'currDbName' set but not used [-Wunused-but-set-variable] e2docsum.c:1580:16: warning: variable 'group_segs' set but not used [-Wunused-but-set-variable] e2docsum.c: In function 'SaveDocsumProject': e2docsum.c:3606:16: warning: variable 'sfp' set but not used [-Wunused-but-set-variable] e2docsum.c: In function 'RetrieveGeneration': e2docsum.c:4135:19: warning: variable 'e2ip' set but not used [-Wunused-but-set-variable] e2docsum.c: In function 'SetupMenus': e2docsum.c:4849:16: warning: variable 'c' set but not used [-Wunused-but-set-variable] e2docsum.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] e2docsum.c:2154:20: warning: 'cddDocProcs' defined but not used [-Wunused-variable] e2docsum.c:2850:13: warning: 'GetBiostrucComplexity' defined but not used [-Wunused-function] e2docsum.c:2883:13: warning: 'GetBiostrucMaxModels' defined but not used [-Wunused-function] e2docsum.c: In function 'LaunchStructureViewer': e2docsum.c:2981:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] e2docsum.c: In function 'LaunchSequin': e2docsum.c:2838:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF asn2graphic.c asn2graphic.c: In function 'ParseFilterItem': asn2graphic.c:1191:21: warning: variable 'j' set but not used [-Wunused-but-set-variable] asn2graphic.c: In function 'GeneProductsLayoutInternal': asn2graphic.c:3730:36: warning: variable 'featureStart' set but not used [-Wunused-but-set-variable] asn2graphic.c: In function 'ScaleSntDrawProc': asn2graphic.c:4401:28: warning: variable 'r' set but not used [-Wunused-but-set-variable] asn2graphic.c: In function 'GphSentProc': asn2graphic.c:4996:16: warning: variable 'scaleY' set but not used [-Wunused-but-set-variable] asn2graphic.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] asn2graphic.c: In function 'ProcessRows': asn2graphic.c:4361:37: warning: 'SegmentTreeBot' may be used uninitialized in this function [-Wuninitialized] asn2graphic.c:4353:24: warning: 'SegmentTreeMid' may be used uninitialized in this function [-Wuninitialized] asn2graphic.c:4349:24: warning: 'SegmentTreeTop' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF medview.c medview.c: In function 'PrintMedlineViewForm': medview.c:588:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF bspview.c ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF gbfview.c gbfview.c: In function 'RelModeFailText': gbfview.c:1000:22: warning: variable 'hasPubs' set but not used [-Wunused-but-set-variable] gbfview.c: In function 'PopulateFlatFile': gbfview.c:1285:22: warning: variable 'doColors' set but not used [-Wunused-but-set-variable] gbfview.c: In function 'PopulateFasta': gbfview.c:1710:33: warning: left-hand operand of comma expression has no effect [-Wunused-value] gbfview.c:1642:20: warning: variable 'group_segs' set but not used [-Wunused-but-set-variable] gbfview.c: In function 'PopulateAsnOrXML': gbfview.c:1965:16: warning: variable 'lookupFar' set but not used [-Wunused-but-set-variable] gbfview.c:1964:16: warning: variable 'lockFar' set but not used [-Wunused-but-set-variable] gbfview.c: At top level: gbfview.c:289:16: warning: 'ColorIcon' defined but not used [-Wunused-function] gbfview.c:940:13: warning: 'LookForPubs' defined but not used [-Wunused-function] gbfview.c:1208:13: warning: 'LookForFarBsp' defined but not used [-Wunused-function] gbfview.c:1227:13: warning: 'LookForFarProds' defined but not used [-Wunused-function] gbfview.c: In function 'ReleaseIcon': gbfview.c:663:28: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] gbfview.c: In function 'PrintFlatFileFastaOrAsn': gbfview.c:2487:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF gphview.c gphview.c: In function 'ReleaseAlignment': gphview.c:1306:18: warning: variable 'slp' set but not used [-Wunused-but-set-variable] gphview.c: In function 'DrawAlignOnAllSequences': gphview.c:1391:10: warning: variable 'vn' set but not used [-Wunused-but-set-variable] gphview.c: In function 'ReleaseDesktop': gphview.c:1836:18: warning: variable 'seg' set but not used [-Wunused-but-set-variable] gphview.c: In function 'AutoScrollGeneName': gphview.c:2100:21: warning: variable 'num' set but not used [-Wunused-but-set-variable] gphview.c: In function 'DisplayGeneChoiceWindow': gphview.c:2426:22: warning: variable 'p' set but not used [-Wunused-but-set-variable] gphview.c: In function 'PrintGraphical': gphview.c:3268:14: warning: unused variable 'ans' [-Wunused-variable] gphview.c: In function 'PopulateAsn2GphGraphic': gphview.c:3868:16: warning: variable 'min' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF gphdraw.c gphdraw.c: In function 'GraphSentProc': gphdraw.c:195:18: warning: variable 'scaleY' set but not used [-Wunused-but-set-variable] gphdraw.c: In function 'DrawGraphToPanel': gphdraw.c:453:27: warning: variable 'xp' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF gxydraw.c gxydraw.c: In function 'DotXYPlot': gxydraw.c:259:19: warning: 'xaxiscount' may be used uninitialized in this function [-Wuninitialized] gxydraw.c:182:19: note: 'xaxiscount' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF gtrdraw.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF seqpanel.c seqpanel.c: In function 'FillFeatureInfo': seqpanel.c:427:18: warning: variable 'stop' set but not used [-Wunused-but-set-variable] seqpanel.c:427:11: warning: variable 'start' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'DrawFeatureCodonLines': seqpanel.c:1897:21: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'DrawFeature': seqpanel.c:2127:21: warning: variable 'prot_len' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'GetSeqChapterFeatureInfo': seqpanel.c:3136:18: warning: variable 'stop' set but not used [-Wunused-but-set-variable] seqpanel.c:3136:11: warning: variable 'start' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'onSeqEdVScrollBarSeqPanel': seqpanel.c:3406:17: warning: variable 'totallines' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'PrintFeature': seqpanel.c:3812:28: warning: variable 'fRight' set but not used [-Wunused-but-set-variable] seqpanel.c:3812:21: warning: variable 'fLeft' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'PrintTranslatedFrame': seqpanel.c:3966:17: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'ExportSequenceText': seqpanel.c:4372:15: warning: pointer targets in passing argument 1 of 'complement_string' differ in signedness [-Wpointer-sign] ../include/salutil.h:78:20: note: expected 'Nlm_CharPtr' but argument is of type 'Nlm_Uint1Ptr' seqpanel.c:4236:17: warning: variable 'curr_para_strings' set but not used [-Wunused-but-set-variable] seqpanel.c:4229:17: warning: variable 'buf' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'SeqEdOnClick': seqpanel.c:4946:21: warning: variable 'direction' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'SeqAlnOnDrag': seqpanel.c:5685:34: warning: variable 'is_ctrl' set but not used [-Wunused-but-set-variable] seqpanel.c:5685:17: warning: variable 'is_double_click' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'ResizeSeqEdView': seqpanel.c:5760:8: warning: variable 'sequence_pos' set but not used [-Wunused-but-set-variable] seqpanel.c:5755:8: warning: variable 'height' set but not used [-Wunused-but-set-variable] seqpanel.c: In function 'WriteAlignmentInterleaveToFileEx': seqpanel.c:8664:15: warning: passing argument 1 of 'fputs' from incompatible pointer type [enabled by default] /usr/include/stdio.h:686:12: note: expected 'const char * __restrict__' but argument is of type 'struct FILE *' seqpanel.c:8664:15: warning: passing argument 2 of 'fputs' from incompatible pointer type [enabled by default] /usr/include/stdio.h:686:12: note: expected 'struct FILE * __restrict__' but argument is of type 'Nlm_CharPtr' seqpanel.c: In function 'WriteAlignmentContiguousToFile': seqpanel.c:8760:13: warning: passing argument 1 of 'fputs' from incompatible pointer type [enabled by default] /usr/include/stdio.h:686:12: note: expected 'const char * __restrict__' but argument is of type 'struct FILE *' seqpanel.c:8760:13: warning: passing argument 2 of 'fputs' from incompatible pointer type [enabled by default] /usr/include/stdio.h:686:12: note: expected 'struct FILE * __restrict__' but argument is of type 'Nlm_CharPtr' seqpanel.c: In function 'ReverseSequenceStrandsInAlignment': seqpanel.c:9007:17: warning: variable 'sep' set but not used [-Wunused-but-set-variable] seqpanel.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] seqpanel.c:1171:16: warning: 'GetAlignmentColumnPercentIDsForAlignmentSection' defined but not used [-Wunused-function] seqpanel.c: In function 'SeqEdFindPatternDialog': seqpanel.c:7707:16: warning: 'g1' may be used uninitialized in this function [-Wuninitialized] seqpanel.c: In function 'PrintFeature': seqpanel.c:3726:24: warning: 'str_prot' may be used uninitialized in this function [-Wuninitialized] seqpanel.c:3810:21: note: 'str_prot' was declared here seqpanel.c: In function 'SeqEdOnClick': seqpanel.c:5030:15: warning: 'is_right_end' may be used uninitialized in this function [-Wuninitialized] seqpanel.c:5026:10: warning: 'is_left_end' may be used uninitialized in this function [-Wuninitialized] seqpanel.c: In function 'SeqEdExportProc': seqpanel.c:4353:38: warning: 'seq_pos' may be used uninitialized in this function [-Wuninitialized] seqpanel.c:4233:17: note: 'seq_pos' was declared here seqpanel.c: In function 'onDrawSeqPanel': seqpanel.c:1252:29: warning: 'alnbuf' may be used uninitialized in this function [-Wuninitialized] seqpanel.c:2466:33: note: 'alnbuf' was declared here seqpanel.c:1252:29: warning: 'seqbuf' may be used uninitialized in this function [-Wuninitialized] seqpanel.c:2466:25: note: 'seqbuf' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ingengraph.c ingengraph.c: In function 'Ing_BigEncodeIdxFeat': ingengraph.c:262:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ingengraph.c: In function 'Ing_AddOneAlignToOverviewPage': ingengraph.c:347:13: warning: unused variable 'bsp' [-Wunused-variable] ingengraph.c: In function 'Ing_AddAlignsToOverviewPage': ingengraph.c:372:18: warning: unused variable 'buf' [-Wunused-variable] ingengraph.c:367:18: warning: variable 'NewLine' set but not used [-Wunused-but-set-variable] ingengraph.c: In function 'Ing_DrawOverviewPage': ingengraph.c:492:14: warning: variable 'offset' set but not used [-Wunused-but-set-variable] ingengraph.c:488:14: warning: unused variable 'Nlm_Visible' [-Wunused-variable] ingengraph.c: In function 'Ing_PopOverviewPage': ingengraph.c:715:16: warning: variable 'margin' set but not used [-Wunused-but-set-variable] ingengraph.c:714:16: warning: unused variable 'buf' [-Wunused-variable] ingengraph.c:708:16: warning: unused variable 'sanp' [-Wunused-variable] ingengraph.c: In function 'Ing_PopDetailedPage': ingengraph.c:1437:16: warning: variable 'CurrentSeg' set but not used [-Wunused-but-set-variable] ingengraph.c: In function 'Ing_ExploreSegments': ingengraph.c:1829:22: warning: unused variable 'isDraft' [-Wunused-variable] ingengraph.c:1827:22: warning: unused variable 'vnp' [-Wunused-variable] ingengraph.c:1826:22: warning: unused variable 'gbp' [-Wunused-variable] ingengraph.c:1824:33: warning: variable 'black' set but not used [-Wunused-but-set-variable] ingengraph.c:1823:33: warning: variable 'lime' set but not used [-Wunused-but-set-variable] ingengraph.c:1823:22: warning: variable 'indigo' set but not used [-Wunused-but-set-variable] ingengraph.c: In function 'Ing_AddGCRect': ingengraph.c:1933:17: warning: variable 'comp2' set but not used [-Wunused-but-set-variable] ingengraph.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ingengraph.c:71:13: warning: 'Ing_GetNamesZoomedVal' declared 'static' but never defined [-Wunused-function] ingengraph.c:583:24: warning: 'Ing_SortByChoice' defined but not used [-Wunused-function] ingengraph.c:602:28: warning: 'Ing_CollectFeatures1' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ingenext.c ingenext.c: In function 'Ing_KeepTheBestAlignments': ingenext.c:167:20: warning: variable 'amaip' set but not used [-Wunused-but-set-variable] ingenext.c: In function 'Ing_HandleQBlastResults': ingenext.c:272:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ingenext.c: In function 'Ing_HandleResults': ingenext.c:535:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ingenext.c: In function 'Ing_AccepttRNAargsProc': ingenext.c:739:18: warning: unused variable 'paramlist' [-Wunused-variable] ingenext.c: In function 'Ing_tRNAscanProc': ingenext.c:915:22: warning: unused variable 'moveMe' [-Wunused-variable] ingenext.c:906:22: warning: unused variable 'first' [-Wunused-variable] ingenext.c:902:22: warning: variable 'b' set but not used [-Wunused-but-set-variable] ingenext.c:896:17: warning: unused variable 'args' [-Wunused-variable] ingenext.c: In function 'Ing_ReadtRNAConfigFile': ingenext.c:1125:15: warning: variable 'demomode' set but not used [-Wunused-but-set-variable] ingenext.c: In function 'Ing_DoBlast2Seqs': ingenext.c:1312:23: warning: variable 'is_local' set but not used [-Wunused-but-set-variable] ingenext.c: In function 'Ing_CreateDotMatrixForm': ingenext.c:1834:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ingenext.c: In function 'Ing_RunSpidey': ingenext.c:1994:20: warning: unused variable 'sanp' [-Wunused-variable] ingenext.c:1993:20: warning: unused variable 'spidp_next' [-Wunused-variable] ingenext.c:1992:20: warning: unused variable 'spidp_head' [-Wunused-variable] ingenext.c: In function 'Ing_ReadmRNAs_ext': ingenext.c:2025:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ingenext.c: In function 'Ing_DeleteInsertInGenomic': ingenext.c:2522:16: warning: unused variable 'newsegs' [-Wunused-variable] ingenext.c: In function 'Ing_ReplaceAllMismatchedInLocation': ingenext.c:2615:21: warning: unused variable 'str' [-Wunused-variable] ingenext.c:2612:22: warning: unused variable 'amaip' [-Wunused-variable] ingenext.c: In function 'Ing_MismatchProc': ingenext.c:3025:15: warning: unused variable 'sip' [-Wunused-variable] ingenext.c: In function 'Ing_PrintSpideyReport': ingenext.c:3471:27: warning: variable 'gmis' set but not used [-Wunused-but-set-variable] ingenext.c: In function 'Ing_PrintBlastReport': ingenext.c:3853:18: warning: unused variable 'more' [-Wunused-variable] ingenext.c:3850:18: warning: variable 'Nlm_DkGray' set but not used [-Wunused-but-set-variable] ingenext.c: In function 'Ing_PopulateReport': ingenext.c:4328:20: warning: unused variable 'sip' [-Wunused-variable] ingenext.c:4324:20: warning: unused variable 'temp' [-Wunused-variable] ingenext.c: In function 'Ing_ResizeReportWindow': ingenext.c:4484:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable] ingenext.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable] ../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function] ingenext.c:59:28: warning: 'Ing_BlastCallback' defined but not used [-Wunused-function] ingenext.c:129:13: warning: 'querytimerlimit' defined but not used [-Wunused-variable] ingenext.c:130:13: warning: 'querytimercount' defined but not used [-Wunused-variable] ingenext.c: In function 'Ing_DoBlast2Seqs': ingenext.c:1457:17: warning: 'e_head' may be used uninitialized in this function [-Wuninitialized] ingenext.c: In function 'Ing_ReportClickProc': ingenext.c:4287:21: warning: 'nmismatches' may be used uninitialized in this function [-Wuninitialized] ingenext.c:4262:22: note: 'nmismatches' was declared here ingenext.c: In function 'Ing_MismatchProc': ingenext.c:3170:32: warning: 'gstart' may be used uninitialized in this function [-Wuninitialized] ingenext.c:3197:34: warning: 'mstart' may be used uninitialized in this function [-Wuninitialized] ingenext.c: In function 'Ing_ReplaceAllMismatchedInLocation': ingenext.c:2681:13: warning: 'nmismatches' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ingenwin.c ingenwin.c: In function 'Ing_PopulateDetailedPage': ingenwin.c:134:22: warning: unused variable 'bSelected' [-Wunused-variable] ingenwin.c: In function 'Ing_DoRange': ingenwin.c:394:22: warning: variable 'bsp' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_PopulateCpG': ingenwin.c:576:19: warning: variable 'nchars' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_ResizeCpGWindow': ingenwin.c:642:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_PopulateMotif': ingenwin.c:718:26: warning: variable 'nchars' set but not used [-Wunused-but-set-variable] ingenwin.c:717:24: warning: variable 'swidth' set but not used [-Wunused-but-set-variable] ingenwin.c:717:18: warning: variable 'slen' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_ResizeMotifWindow': ingenwin.c:785:12: warning: unused variable 'name' [-Wunused-variable] ingenwin.c:783:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_ShowComplexity': ingenwin.c:1270:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] ingenwin.c: In function 'Ing_CreateNewFeature': ingenwin.c:1301:22: warning: unused variable 'rnatype' [-Wunused-variable] ingenwin.c: In function 'Ing_GetAlignmentIntervals': ingenwin.c:1418:20: warning: unused variable 'master' [-Wunused-variable] ingenwin.c: In function 'Ing_OldGetAlignmentIntervals': ingenwin.c:1494:20: warning: unused variable 'master' [-Wunused-variable] ingenwin.c: In function 'Ing_OldMakeLocListFromSAP': ingenwin.c:1613:26: warning: unused variable 'slp2' [-Wunused-variable] ingenwin.c:1613:13: warning: unused variable 'slp1' [-Wunused-variable] ingenwin.c: In function 'Ing_OM_MsgFunc': ingenwin.c:2380:15: warning: the address of 'sfc' will always evaluate as 'true' [-Waddress] ingenwin.c:2284:22: warning: unused variable 'segID' [-Wunused-variable] ingenwin.c:2280:22: warning: unused variable 'sep' [-Wunused-variable] ingenwin.c:2271:31: warning: unused variable 'number' [-Wunused-variable] ingenwin.c:2271:22: warning: unused variable 'score' [-Wunused-variable] ingenwin.c:2270:34: warning: unused variable 'n' [-Wunused-variable] ingenwin.c:2270:28: warning: unused variable 's2' [-Wunused-variable] ingenwin.c:2270:22: warning: unused variable 's1' [-Wunused-variable] ingenwin.c: In function 'Ing_MoveCursor': ingenwin.c:2631:9: warning: variable 'grayClr2' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_FeatViewerClickProc': ingenwin.c:2814:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ingenwin.c:2804:14: warning: unused variable 'slp' [-Wunused-variable] ingenwin.c: In function 'Ing_SequenceClickProc': ingenwin.c:2908:22: warning: variable 'ssp' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_ReadInBlastAsn': ingenwin.c:3077:19: warning: unused variable 'Report' [-Wunused-variable] ingenwin.c:3075:19: warning: unused variable 'sip' [-Wunused-variable] ingenwin.c:3074:19: warning: unused variable 'salp' [-Wunused-variable] ingenwin.c:3073:19: warning: unused variable 'n_sap' [-Wunused-variable] ingenwin.c: In function 'Ing_ParseSeqIdFile': ingenwin.c:3142:20: warning: unused variable 'bsp' [-Wunused-variable] ingenwin.c: In function 'Ing_ReadInFeatureTable': ingenwin.c:3194:20: warning: variable 'sanp' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_AssembleGenscanInfo': ingenwin.c:3258:17: warning: unused variable 'slp' [-Wunused-variable] ingenwin.c: In function 'Ing_ReadInGenscan': ingenwin.c:3300:33: warning: unused variable 'str' [-Wunused-variable] ingenwin.c:3300:20: warning: unused variable 'letter' [-Wunused-variable] ingenwin.c:3298:33: warning: unused variable 'first_pass' [-Wunused-variable] ingenwin.c: In function 'Ing_AssembleTabDelimited': ingenwin.c:3519:17: warning: variable 'score' set but not used [-Wunused-but-set-variable] ingenwin.c:3516:17: warning: unused variable 'tmp' [-Wunused-variable] ingenwin.c: In function 'Ing_ReadInTabDelimited': ingenwin.c:3659:40: warning: variable 'label_str' set but not used [-Wunused-but-set-variable] ingenwin.c:3659:20: warning: unused variable 'tmp' [-Wunused-variable] ingenwin.c:3653:20: warning: unused variable 'lip_tmp' [-Wunused-variable] ingenwin.c:3650:20: warning: unused variable 'letter' [-Wunused-variable] ingenwin.c: In function 'Ing_FileOpenSpecial': ingenwin.c:3984:16: warning: unused variable 'Report' [-Wunused-variable] ingenwin.c: In function 'Ing_FileOpenMain': ingenwin.c:4078:21: warning: unused variable 'sep_orig' [-Wunused-variable] ingenwin.c: In function 'Ing_ResizeMainWindow': ingenwin.c:4187:25: warning: variable 'InfoHeight' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_OpenFromFileORNetwork': ingenwin.c:4491:25: warning: variable 'b2' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_EditFeature': ingenwin.c:4640:22: warning: variable 'igvp' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_MarkSeqAnnot': ingenwin.c:4713:16: warning: unused variable 'bNoParent' [-Wunused-variable] ingenwin.c: In function 'Ing_CreateMismatchedDialog': ingenwin.c:4924:31: warning: 'main' is usually a function [-Wmain] ingenwin.c: In function 'Ing_PropagateClickProc': ingenwin.c:5064:22: warning: unused variable 'primID' [-Wunused-variable] ingenwin.c:5063:22: warning: unused variable 'itemtype' [-Wunused-variable] ingenwin.c:5062:22: warning: unused variable 'itemID' [-Wunused-variable] ingenwin.c:5061:22: warning: unused variable 'entityID' [-Wunused-variable] ingenwin.c:5060:22: warning: unused variable 'ssp' [-Wunused-variable] ingenwin.c:5059:22: warning: unused variable 'igvp' [-Wunused-variable] ingenwin.c: In function 'Ing_PrintCompProteins': ingenwin.c:5146:32: warning: unused variable 'str2' [-Wunused-variable] ingenwin.c: In function 'Ing_PropagateReport': ingenwin.c:5282:14: warning: variable 'ARROW' set but not used [-Wunused-but-set-variable] ingenwin.c:5279:14: warning: unused variable 'stringwidth' [-Wunused-variable] ingenwin.c:5277:14: warning: unused variable 'left' [-Wunused-variable] ingenwin.c:5276:14: warning: variable 'prim' set but not used [-Wunused-but-set-variable] ingenwin.c: In function 'Ing_DoPropagate': ingenwin.c:5596:14: warning: unused variable 'strErr' [-Wunused-variable] ingenwin.c: In function 'Ing_GetFromNetwork': ingenwin.c:7518:11: warning: unused variable 'szAppName' [-Wunused-variable] ingenwin.c: In function 'Ing_SetupMainWindow': ingenwin.c:7761:16: warning: unused variable 'szAppName' [-Wunused-variable] ingenwin.c:7760:48: warning: unused variable 'str2' [-Wunused-variable] ingenwin.c:7760:33: warning: unused variable 'str1' [-Wunused-variable] ingenwin.c:7760:16: warning: unused variable 'title' [-Wunused-variable] ingenwin.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable] ../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function] ingenwin.c:1869:16: warning: 'Ing_DeSelectPrim' defined but not used [-Wunused-function] ingenwin.c:1487:23: warning: 'Ing_OldGetAlignmentIntervals' defined but not used [-Wunused-function] ingenwin.c:1610:18: warning: 'Ing_OldMakeLocListFromSAP' defined but not used [-Wunused-function] ingenwin.c:5535:16: warning: 'Ing_KeywordAlreadyInList' defined but not used [-Wunused-function] ingenwin.c:6717:13: warning: 'Ing_BspListProc' defined but not used [-Wunused-function] ingenwin.c:7552:13: warning: 'Ing_ItemtoNetwork' defined but not used [-Wunused-function] ingenwin.c: In function 'Ing_ReplaceMismatchedProc': ingenwin.c:4902:37: warning: 'stop' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:4902:37: warning: 'start' may be used uninitialized in this function [-Wuninitialized] ingenwin.c: In function 'Ing_PropagateReport': ingenwin.c:5224:12: warning: 'j' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:5137:17: note: 'j' was declared here ingenwin.c: In function 'Ing_FileOpenSpecial': ingenwin.c:3290:28: warning: 'strand' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:3255:17: note: 'strand' was declared here ingenwin.c: In function 'Ing_KozakProc': ingenwin.c:1048:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:1049:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized] ingenwin.c: In function 'Ing_SignalPeptideProc': ingenwin.c:1099:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:1100:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized] ingenwin.c: In function 'Ing_RepeatsProc': ingenwin.c:997:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:998:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized] ingenwin.c: In function 'Ing_PolyAProc': ingenwin.c:946:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:947:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized] ingenwin.c: In function 'Ing_CpGProc': ingenwin.c:895:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized] ingenwin.c:896:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF macrodlg.c macrodlg.c: In function 'ExistingTextDialog': macrodlg.c:1860:22: warning: variable 'ppt' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'SourceQualChoiceDialog': macrodlg.c:3683:48: warning: variable 'b4' set but not used [-Wunused-but-set-variable] macrodlg.c:3683:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable] macrodlg.c:3683:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable] macrodlg.c:3683:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'SourceConstraintDialog': macrodlg.c:3921:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable] macrodlg.c:3921:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable] macrodlg.c:3921:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'CDSGeneProtQualConstraintDialog': macrodlg.c:4235:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable] macrodlg.c:4235:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable] macrodlg.c:4235:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'TestApplyActionDialog': macrodlg.c:11828:8: warning: variable 'field_type' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'TestEditActionDialog': macrodlg.c:12002:8: warning: variable 'field_type' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'AddMacroActions': macrodlg.c:18065:25: warning: variable 'rval' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'PointerToSampleDialog': macrodlg.c:18199:19: warning: variable 'max_char_per_line' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'SampleDialogCopy': macrodlg.c:18319:53: warning: variable 'last_col' set but not used [-Wunused-but-set-variable] macrodlg.c:18319:42: warning: variable 'first_col' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'SingleMacroAcceptButton': macrodlg.c:19597:33: warning: variable 'num_features' set but not used [-Wunused-but-set-variable] macrodlg.c:19597:21: warning: variable 'num_fields' set but not used [-Wunused-but-set-variable] macrodlg.c: In function 'LaunchMacroTemplateEditor': macrodlg.c:21793:23: warning: variable 'bfp' set but not used [-Wunused-but-set-variable] macrodlg.c: At top level: macrodlg.c:9046:15: warning: 'LocOrStringConstraintDialog' defined but not used [-Wunused-function] macrodlg.c: In function 'ApplyProductUpdateTableBtn': macrodlg.c:25055:15: warning: 'lip' may be used uninitialized in this function [-Wuninitialized] macrodlg.c: In function 'ActionToSingleMacroActionForm': macrodlg.c:19803:6: warning: 'val' may be used uninitialized in this function [-Wuninitialized] macrodlg.c: In function 'BuildEditMacroActionWindow': macrodlg.c:13991:16: warning: 'indexer_only_group' may be used uninitialized in this function [-Wuninitialized] macrodlg.c:13897:47: note: 'indexer_only_group' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF biosrc.c biosrc.c: In function 'CreateBioSourceDialog': biosrc.c:3506:18: warning: variable 'y' set but not used [-Wunused-but-set-variable] biosrc.c: At top level: biosrc.c:2459:13: warning: 'OrgModPtrToOrgmodDialog' defined but not used [-Wunused-function] biosrc.c:2508:16: warning: 'OrgmodDialogToOrgModPtr' defined but not used [-Wunused-function] biosrc.c:2568:13: warning: 'SubSourcePtrToSubsourceDialog' defined but not used [-Wunused-function] biosrc.c:2991:16: warning: 'SubsourceDialogToSubSourcePtr' defined but not used [-Wunused-function] biosrc.c:3182:26: warning: 'EnumListFromQualNameAssoc' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF cdrgn.c cdrgn.c: In function 'ProductToSeqLocPtr': cdrgn.c:1318:19: warning: variable 'rfp' set but not used [-Wunused-but-set-variable] cdrgn.c: In function 'CreateCodeBreakAlist': cdrgn.c:1951:20: warning: variable 'first' set but not used [-Wunused-but-set-variable] cdrgn.c: In function 'CodeBreakPtrToCodeBreakDialog': cdrgn.c:2002:19: warning: variable 'aa' set but not used [-Wunused-but-set-variable] cdrgn.c: In function 'PopulateAAPopup': cdrgn.c:7055:20: warning: variable 'first' set but not used [-Wunused-but-set-variable] cdrgn.c: At top level: cdrgn.c:6264:14: warning: 'check_rna_type' defined but not used [-Wunused-function] cdrgn.c:6341:15: warning: 'CreateMrnaUserObjectDialog' defined but not used [-Wunused-function] cdrgn.c:6784:18: warning: 'FindOrAddQual' defined but not used [-Wunused-function] cdrgn.c:6803:13: warning: 'RemoveQualByName' defined but not used [-Wunused-function] cdrgn.c:6865:13: warning: 'ConvertRnaRefNameToProductQual' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF import.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF pubdesc.c pubdesc.c: In function 'MakeReplaceAuthorsForm': pubdesc.c:4260:24: warning: variable 'pepp' set but not used [-Wunused-but-set-variable] pubdesc.c: In function 'DisplayDocSum': pubdesc.c:4823:9: warning: variable 'lineheight' set but not used [-Wunused-but-set-variable] pubdesc.c: At top level: pubdesc.c:5335:13: warning: 'Quit' defined but not used [-Wunused-function] pubdesc.c:5071:14: warning: 'AddAll' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF seqsub.c seqsub.c: In function 'SeqSubmitFromTemplateEditor': seqsub.c:3250:20: warning: variable 'omdp' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF mapgene.c mapgene.c: In function 'load_new_align': mapgene.c:79:17: warning: variable 'match_slp' set but not used [-Wunused-but-set-variable] mapgene.c: In function 'figure_loc_by_position': mapgene.c:1039:20: warning: variable 'center' set but not used [-Wunused-but-set-variable] mapgene.c: In function 'cvt_loc_for_single_gene': mapgene.c:1958:29: warning: variable 'p_align_offset' set but not used [-Wunused-but-set-variable] mapgene.c:1957:7: warning: unused variable 'shift' [-Wunused-variable] mapgene.c: In function 'print_header_for_center': mapgene.c:2693:10: warning: variable 'link' set but not used [-Wunused-but-set-variable] mapgene.c: In function 'PrintGeneticMarkerForOneMap': mapgene.c:3635:10: warning: variable 'link' set but not used [-Wunused-but-set-variable] mapgene.c: At top level: mapgene.c:27:13: warning: 'print_this_id' defined but not used [-Wunused-function] mapgene.c:200:13: warning: 'get_center_pointer' defined but not used [-Wunused-function] mapgene.c:1280:13: warning: 'change_anchor_to_front' defined but not used [-Wunused-function] mapgene.c:1748:16: warning: 'merge_slp_list' defined but not used [-Wunused-function] mapgene.c:1788:13: warning: 'adjust_slp_list' defined but not used [-Wunused-function] mapgene.c:3207:16: warning: 'convert_center_name_to_gifname' defined but not used [-Wunused-function] mapgene.c: In function 'PrintContigForOneMap': mapgene.c:3126:2: warning: 'yac_num' may be used uninitialized in this function [-Wuninitialized] mapgene.c:3152:7: note: 'yac_num' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF prtgene.c prtgene.c: In function 'print_store_for_html': prtgene.c:749:7: warning: variable 'white_sp' set but not used [-Wunused-but-set-variable] rm -f libncbidesk.a ar cru libncbidesk.a drawseq.o dotmatrx.o fea2seg.o fstyle.o smdlg1.o smdlg2.o smdlg3.o smtools.o styleman.o stylemui.o glbpic.o layout.o saldist.o saled.o salfiles.o salpanel.o salparam.o salsa.o seqfltr.o seqgraph.o seqgrphx.o seqmtrx.o seqpcc.o seqanal.o aacomp.o seqscrl.o valdlg.o vsm.o vsmfile.o vsmutil.o udvgraph.o udvopen.o udvpanel.o dotvibrant.o dlgutil1.o dlgutil2.o e2trmlst.o e2docsum.o asn2graphic.o medview.o bspview.o gbfview.o gphview.o gphdraw.o gxydraw.o gtrdraw.o seqpanel.o ingengraph.o ingenext.o ingenwin.o macrodlg.o biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o cp -p libncbidesk.a ../lib ranlib ../lib/libncbidesk.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ddvclick.c ddvclick.c: In function 'DDV_SendBSPSelectMsg_OLD': ddvclick.c:979:13: warning: variable 'bDeselectAll' set but not used [-Wunused-but-set-variable] ddvclick.c: In function 'DDV_SendBSPSelectMsg': ddvclick.c:1090:18: warning: variable 'bDeselectAll' set but not used [-Wunused-but-set-variable] ddvclick.c: In function 'DDV_DragProc': ddvclick.c:2013:13: warning: unused variable 'cur_pgp' [-Wunused-variable] ddvclick.c: In function 'DDV_HoldProc': ddvclick.c:2494:13: warning: unused variable 'Scroll' [-Wunused-variable] ddvclick.c:2490:13: warning: unused variable 'cur_pgp' [-Wunused-variable] ddvclick.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] ddvclick.c:1823:13: warning: 'EraseOutline' defined but not used [-Wunused-function] ddvclick.c:1811:16: warning: 'RectanglesAreSame' defined but not used [-Wunused-function] ddvclick.c:611:13: warning: 'DDV_GetSeqAlignCoordGivenCol' defined but not used [-Wunused-function] ddvclick.c:970:13: warning: 'DDV_SendBSPSelectMsg_OLD' defined but not used [-Wunused-function] ddvclick.c: In function 'DDV_GetSeqNameGivenRow': ddvclick.c:956:6: warning: 'sip' may be used uninitialized in this function [-Wuninitialized] ddvclick.c: In function 'DDV_SendBSPSelectMsg.constprop.6': ddvclick.c:1127:7: warning: 'bsp_coord_start' may be used uninitialized in this function [-Wuninitialized] ddvclick.c:1127:22: warning: 'pgp' may be used uninitialized in this function [-Wuninitialized] ddvclick.c:1127:7: warning: 'bsp_coord_stop' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ddvgraph.c ddvgraph.c: In function 'DDV_DrawSequence': ddvgraph.c:701:31: warning: unused variable 'pos' [-Wunused-variable] ddvgraph.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ddvopen.c ddvopen.c: In function 'DDV_GetAndCheckSeqAlign': ddvopen.c:1739:8: warning: variable 'nRet' set but not used [-Wunused-but-set-variable] ddvopen.c: In function 'DDV_FOpenAcceptProc': ddvopen.c:1932:11: warning: variable 'nRet' set but not used [-Wunused-but-set-variable] ddvopen.c: In function 'DDV_NetOpen_okProc': ddvopen.c:2141:8: warning: variable 'AccessType' set but not used [-Wunused-but-set-variable] ddvopen.c: In function 'DDV_ImportBioseqDlg': ddvopen.c:2819:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] ddvopen.c: In function 'DDV_HideDlg': ddvopen.c:3135:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] ddvopen.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] ddvopen.c:1272:13: warning: 'DDV_Convert' defined but not used [-Wunused-function] ddvopen.c:1285:13: warning: 'DDV_NoConvert' defined but not used [-Wunused-function] ddvopen.c:2111:16: warning: 'DDV_IsInt' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ddvpanel.c ddvpanel.c: In function 'DDV_CreateViewerPanel': ddvpanel.c:1177:8: warning: variable 'cxChar' set but not used [-Wunused-but-set-variable] ddvpanel.c: In function 'DDV_DispStyles_OkProc': ddvpanel.c:1543:21: warning: unused variable 'szBuf' [-Wunused-variable] ddvpanel.c: In function 'DDV_ExportTexte': ddvpanel.c:2799:40: warning: variable 'browse' set but not used [-Wunused-but-set-variable] ddvpanel.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] ddvpanel.c:3024:13: warning: 'DDV_DeleteRow' defined but not used [-Wunused-function] ddvpanel.c:3266:13: warning: 'DDV_MoveRowLeft' defined but not used [-Wunused-function] ddvpanel.c:3272:13: warning: 'DDV_MoveRowRight' defined but not used [-Wunused-function] ddvpanel.c:3278:13: warning: 'DDV_MoveLeftBoundaryLeft' defined but not used [-Wunused-function] ddvpanel.c:3284:13: warning: 'DDV_MoveLeftBoundaryRight' defined but not used [-Wunused-function] ddvpanel.c:3290:13: warning: 'DDV_MoveRightBoundaryLeft' defined but not used [-Wunused-function] ddvpanel.c:3296:13: warning: 'DDV_MoveRightBoundaryRight' defined but not used [-Wunused-function] ddvpanel.c:3377:13: warning: 'write_annot' defined but not used [-Wunused-function] ddvpanel.c: In function 'DDVExportTexteOkProc': ddvpanel.c:2647:27: warning: 'bPrintGap' may be used uninitialized in this function [-Wuninitialized] ddvpanel.c: In function 'DDV_SortPGPLineNum': ddvpanel.c:2441:9: warning: 'pgp' may be used uninitialized in this function [-Wuninitialized] rm -f libddvlib.a ar cru libddvlib.a ddvclick.o ddvgraph.o ddvopen.o ddvpanel.o cp -p libddvlib.a ../lib ranlib ../lib/libddvlib.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF corematx.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF dvncode.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objmmdb1.c objmmdb1.c: In function 'BiostrucAsnRead': objmmdb1.c:90:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucIdFree': objmmdb1.c:323:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucIdAsnRead': objmmdb1.c:358:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'BiostrucSetAsnRead': objmmdb1.c:547:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucAnnotSetAsnRead': objmmdb1.c:716:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucResidueGraphSetAsnRead': objmmdb1.c:885:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucDescrFree': objmmdb1.c:1015:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucDescrAsnRead': objmmdb1.c:1059:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'BiostrucHistoryAsnRead': objmmdb1.c:1270:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:1269:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'BiostrucReplaceAsnRead': objmmdb1.c:1450:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:1449:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'VersionOfDatabase_version_of_databaseFree': objmmdb1.c:1618:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiostrucSourceAsnRead': objmmdb1.c:1652:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'VersionOfDatabase_version_of_databaseAsnRead': objmmdb1.c:1753:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'BiostrucGraphAsnRead': objmmdb1.c:2000:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiomolDescrFree': objmmdb1.c:2138:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'BiomolDescrAsnRead': objmmdb1.c:2188:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'ResidueGraphAsnRead': objmmdb1.c:2445:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'MoleculeGraphAsnRead': objmmdb1.c:2652:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'InterResidueBondAsnRead': objmmdb1.c:2853:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:2852:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'ResidueAsnRead': objmmdb1.c:3033:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:3032:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'ResidueGraphPntrFree': objmmdb1.c:3172:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'ResidueGraphPntrAsnRead': objmmdb1.c:3207:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'BiostrucGraphPntrAsnRead': objmmdb1.c:3394:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:3393:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'BiostrucResidueGraphSetPntrAsnRead': objmmdb1.c:3559:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:3558:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'AtomAsnRead': objmmdb1.c:3725:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: In function 'IntraResidueBondAsnRead': objmmdb1.c:3916:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:3915:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'ChiralCenterAsnRead': objmmdb1.c:4088:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:4087:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'AtomPntrAsnRead': objmmdb1.c:4276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c:4275:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb1.c: In function 'AtomPntrSetAsnRead': objmmdb1.c:4430:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb1.c: At top level: ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] objmmdb1.c: In function 'BiomolDescrAsnRead': objmmdb1.c:2283:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb1.c: In function 'BiostrucDescrAsnRead': objmmdb1.c:1126:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objmmdb2.c objmmdb2.c: In function 'BiostrucModelAsnRead': objmmdb2.c:88:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'ModelDescrFree': objmmdb2.c:241:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'ModelDescrAsnRead': objmmdb2.c:288:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'ModelSpaceAsnRead': objmmdb2.c:511:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c:510:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'Coordinates_coordinatesFree': objmmdb2.c:707:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'ModelCoordinateSetAsnRead': objmmdb2.c:741:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'Coordinates_coordinatesAsnRead': objmmdb2.c:829:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'ReferenceFrameAsnRead': objmmdb2.c:1060:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c:1059:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'CoordinatesFree': objmmdb2.c:1190:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'CoordinatesAsnRead': objmmdb2.c:1228:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'AtomicCoordinatesAsnRead': objmmdb2.c:1417:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'Surface_surfaceFree': objmmdb2.c:1636:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'SurfaceCoordinatesAsnRead': objmmdb2.c:1682:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c:1681:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'Surface_surfaceAsnRead': objmmdb2.c:1762:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'DensityCoordinatesAsnRead': objmmdb2.c:2026:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'ModelSpacePointsAsnRead': objmmdb2.c:2258:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'AtomicTemperatureFactorsFree': objmmdb2.c:2398:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'AtomicTemperatureFactorsAsnRead': objmmdb2.c:2433:12: warning: unused variable 'isError' [-Wunused-variable] objmmdb2.c: In function 'AtomicOccupanciesAsnRead': objmmdb2.c:2609:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'AlternateConformationIdsAsnRead': objmmdb2.c:2753:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'ConformationEnsembleAsnRead': objmmdb2.c:2883:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'IsotropicTemperatureFactorsAsnRead': objmmdb2.c:3046:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'AnisotropicTemperatureFactorsAsnRead': objmmdb2.c:3212:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'TMeshAsnRead': objmmdb2.c:3416:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: In function 'TrianglesAsnRead': objmmdb2.c:3615:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb2.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] objmmdb2.c: In function 'CoordinatesAsnRead': objmmdb2.c:1278:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb2.c: In function 'ModelDescrAsnRead': objmmdb2.c:365:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb2.c: In function 'AtomicTemperatureFactorsAsnRead': objmmdb2.c:2479:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb2.c: In function 'SurfaceCoordinatesAsnRead': objmmdb2.c:1824:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb2.c:1761:10: note: 'choice' was declared here objmmdb2.c: In function 'ModelCoordinateSetAsnRead': objmmdb2.c:875:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb2.c:828:10: note: 'choice' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objmmdb3.c objmmdb3.c: In function 'BiostrucFeatureSetAsnRead': objmmdb3.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ChemGraphPntrsFree': objmmdb3.c:219:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'AtomPntrsAsnRead': objmmdb3.c:442:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ChemGraphAlignmentAsnRead': objmmdb3.c:624:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ChemGraphInteractionAsnRead': objmmdb3.c:821:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'SphereAsnRead': objmmdb3.c:1020:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ConeAsnRead': objmmdb3.c:1188:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'CylinderAsnRead': objmmdb3.c:1368:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'BrickAsnRead': objmmdb3.c:1553:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'TransformAsnRead': objmmdb3.c:1792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'BiostrucFeatureSetDescrFree': objmmdb3.c:1916:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'Location_locationFree': objmmdb3.c:2156:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'BiostrucFeatureAsnRead': objmmdb3.c:2201:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'Property_propertyFree': objmmdb3.c:2716:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ColorPropAsnRead': objmmdb3.c:2792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'CameraAsnRead': objmmdb3.c:2979:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'BiostrucScriptAsnRead': objmmdb3.c:3163:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'RegionPntrsAsnRead': objmmdb3.c:3322:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'RegionSimilarityAsnRead': objmmdb3.c:3639:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'OtherFeatureAsnRead': objmmdb3.c:3815:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'BiostrucMoleculePntrAsnRead': objmmdb3.c:3988:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'MoleculePntrsAsnRead': objmmdb3.c:4330:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ResidueExplicitPntrsAsnRead': objmmdb3.c:4492:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ResidueIntervalPntrAsnRead': objmmdb3.c:4659:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'RegionCoordinatesAsnRead': objmmdb3.c:4830:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'RegionBoundaryFree': objmmdb3.c:4965:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'AlignStatsAsnRead': objmmdb3.c:5196:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'RealValueAsnRead': objmmdb3.c:5437:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'ModelSpacePointAsnRead': objmmdb3.c:5597:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'MoveFree': objmmdb3.c:5740:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'RotMatrixAsnRead': objmmdb3.c:5948:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'TransMatrixAsnRead': objmmdb3.c:6180:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'GLMatrixAsnRead': objmmdb3.c:6358:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: In function 'BiostrucScriptStepAsnRead': objmmdb3.c:6658:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmmdb3.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] objmmdb3.c: In function 'MoveAsnRead': objmmdb3.c:5820:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb3.c: In function 'RegionBoundaryAsnRead': objmmdb3.c:5059:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb3.c: In function 'BiostrucFeatureSetDescrAsnRead': objmmdb3.c:2019:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb3.c: In function 'ChemGraphPntrsAsnRead': objmmdb3.c:306:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb3.c: In function 'RegionPntrsAsnRead': objmmdb3.c:3456:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb3.c:3401:10: note: 'choice' was declared here objmmdb3.c: In function 'BiostrucFeatureAsnRead': objmmdb3.c:2365:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmmdb3.c:2303:10: note: 'choice' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objcn3d.c objcn3d.c: In function 'Cn3dStyleDictionaryAsnRead': objcn3d.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c: In function 'Cn3dUserAnnotationsAsnRead': objcn3d.c:251:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c: In function 'Cn3dColorAsnRead': objcn3d.c:415:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:414:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dBackboneStyleAsnRead': objcn3d.c:604:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:603:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dGeneralStyleAsnRead': objcn3d.c:787:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:786:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dBackboneLabelStyleAsnRead': objcn3d.c:969:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:968:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dStyleSettingsAsnRead': objcn3d.c:1171:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:1170:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dStyleSettingsSetAsnRead': objcn3d.c:1573:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c: In function 'Cn3dStyleTableItemAsnRead': objcn3d.c:1702:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:1701:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dResidueRangeAsnRead': objcn3d.c:1866:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:1865:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dMoleculeLocationAsnRead': objcn3d.c:2028:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c: In function 'Cn3dObjectLocationAsnRead': objcn3d.c:2190:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c: In function 'Cn3dUserAnnotationAsnRead': objcn3d.c:2355:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c: In function 'Cn3dGLMatrixAsnRead': objcn3d.c:2546:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:2545:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dVectorAsnRead': objcn3d.c:2833:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:2832:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: In function 'Cn3dViewSettingsAsnRead': objcn3d.c:3005:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcn3d.c:3004:12: warning: unused variable 'isError' [-Wunused-variable] objcn3d.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF mmdbapi.c mmdbapi.c: In function 'MakeAModelstruc': mmdbapi.c:192:11: warning: unused variable 'iCount' [-Wunused-variable] mmdbapi.c:189:11: warning: unused variable 'pdnmsCount' [-Wunused-variable] mmdbapi.c: In function 'AddPFBSelect': mmdbapi.c:532:11: warning: unused variable 'pmsdStruc' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF mmdbapi1.c mmdbapi1.c: In function 'FreeAtomicModelAsnLists': mmdbapi1.c:1037:21: warning: unused variable 'pcoThis' [-Wunused-variable] mmdbapi1.c: In function 'FetchBS': mmdbapi1.c:1242:13: warning: unused variable 'bIsNetwork' [-Wunused-variable] mmdbapi1.c: In function 'FreeSurfaceModelAsnList': mmdbapi1.c:1627:16: warning: variable 'pvnX' set but not used [-Wunused-but-set-variable] mmdbapi1.c: In function 'MakeChemGraphNodeList': mmdbapi1.c:2343:16: warning: variable 'pvnThis' set but not used [-Wunused-but-set-variable] mmdbapi1.c: In function 'DoApplyTransform': mmdbapi1.c:2573:8: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] mmdbapi1.c: In function 'DoReverseTransform': mmdbapi1.c:2713:8: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] mmdbapi1.c: In function 'InstBSAnnotSet': mmdbapi1.c:2860:8: warning: unused variable 'psfsThis' [-Wunused-variable] mmdbapi1.c:2859:22: warning: unused variable 'pbsfThis' [-Wunused-variable] mmdbapi1.c:2855:9: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] mmdbapi1.c: In function 'BiosToSeq': mmdbapi1.c:2978:19: warning: unused variable 'loc1' [-Wunused-variable] mmdbapi1.c:2967:22: warning: unused variable 'pbsf' [-Wunused-variable] mmdbapi1.c: In function 'fnPBSFtoPSA': mmdbapi1.c:3174:19: warning: unused variable 'loc1' [-Wunused-variable] mmdbapi1.c: In function 'BiostrToSeqAnnotSet': mmdbapi1.c:3408:19: warning: unused variable 'loc1' [-Wunused-variable] mmdbapi1.c:3397:22: warning: unused variable 'pbsf' [-Wunused-variable] mmdbapi1.c: In function 'InstallAlignedSlave': mmdbapi1.c:3877:9: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi1.c:3874:9: warning: unused variable 'psfsThis' [-Wunused-variable] mmdbapi1.c: In function 'BiostrucAddFeature': mmdbapi1.c:4184:11: warning: variable 'ncbiVast' set but not used [-Wunused-but-set-variable] mmdbapi1.c:4182:11: warning: variable 'pdbFootnote' set but not used [-Wunused-but-set-variable] mmdbapi1.c:4181:11: warning: variable 'pdbSite' set but not used [-Wunused-but-set-variable] mmdbapi1.c:4172:15: warning: unused variable 'pdvnThis' [-Wunused-variable] mmdbapi1.c: In function 'BiostrucAsnGet': mmdbapi1.c:5289:18: warning: variable 'aop' set but not used [-Wunused-but-set-variable] mmdbapi1.c: In function 'BiosToSeq': mmdbapi1.c:3127:20: warning: 'slavesip' may be used uninitialized in this function [-Wuninitialized] mmdbapi1.c: In function 'BiostrToSeqAnnotSet': mmdbapi1.c:3559:20: warning: 'slavesip' may be used uninitialized in this function [-Wuninitialized] mmdbapi1.c: In function 'InstBSAnnotSet': mmdbapi1.c:2885:13: warning: 'iMMDBId' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF mmdbapi2.c mmdbapi2.c: In function 'GetAtomLocs': mmdbapi2.c:1471:9: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] mmdbapi2.c: In function 'AssignAtomLocId': mmdbapi2.c:1537:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi2.c: In function 'AssignBackBone': mmdbapi2.c:1686:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi2.c: In function 'AssignVirtual': mmdbapi2.c:1790:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi2.c: In function 'AssignIons': mmdbapi2.c:1846:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi2.c: In function 'MolFromPDBChain': mmdbapi2.c:1931:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi2.c: In function 'SeqStringFromMol': mmdbapi2.c:1948:9: warning: unused variable 'iTest' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF mmdbapi3.c mmdbapi3.c: In function 'WritePDBHeader': mmdbapi3.c:840:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] mmdbapi3.c: In function 'WritePDBRemarks': mmdbapi3.c:1389:8: warning: unused variable 'len' [-Wunused-variable] mmdbapi3.c:1388:9: warning: unused variable 'pcThis' [-Wunused-variable] mmdbapi3.c:1387:21: warning: unused variable 'pbsdrLast' [-Wunused-variable] mmdbapi3.c:1386:21: warning: unused variable 'pbsdrThis' [-Wunused-variable] mmdbapi3.c: In function 'WritePDBConnect': mmdbapi3.c:1610:9: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi3.c: In function 'WritePDBModelList': mmdbapi3.c:1625:10: warning: variable 'iCount' set but not used [-Wunused-but-set-variable] mmdbapi3.c: In function 'WriteKinAtom': mmdbapi3.c:2287:11: warning: unused variable 'pcElName' [-Wunused-variable] mmdbapi3.c: In function 'WriteFASTAMolecule': mmdbapi3.c:3537:9: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] mmdbapi3.c: In function 'WriteKinAtom': mmdbapi3.c:2314:12: warning: 'iTemp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF mmdbapi4.c mmdbapi4.c: In function 'RefreshSurface': mmdbapi4.c:147:10: warning: unused variable 'iVal' [-Wunused-variable] mmdbapi4.c: In function 'FreeCoordinatesAsnLists': mmdbapi4.c:335:28: warning: variable 'pdcThis' set but not used [-Wunused-but-set-variable] mmdbapi4.c: In function 'FreeRedundantAsn': mmdbapi4.c:371:10: warning: unused variable 'pmmdThis' [-Wunused-variable] mmdbapi4.c:370:11: warning: unused variable 'pdnmmThis' [-Wunused-variable] mmdbapi4.c:367:22: warning: unused variable 'pbsmThis' [-Wunused-variable] mmdbapi4.c: In function 'RefreshModelAsnMem': mmdbapi4.c:474:13: warning: unused variable 'iCoordSets' [-Wunused-variable] mmdbapi4.c:465:20: warning: unused variable 'pappThis' [-Wunused-variable] mmdbapi4.c:464:27: warning: unused variable 'pmspThis' [-Wunused-variable] mmdbapi4.c:463:28: warning: unused variable 'pocThis' [-Wunused-variable] mmdbapi4.c:458:34: warning: unused variable 'paciThis' [-Wunused-variable] mmdbapi4.c: In function 'RebuildChemGraphAsn': mmdbapi4.c:931:15: warning: unused variable 'bOK' [-Wunused-variable] mmdbapi4.c: In function 'WriteASNChemGraphOnly': mmdbapi4.c:1192:10: warning: unused variable 'iHash' [-Wunused-variable] mmdbapi4.c: In function 'FreeSingleModel': mmdbapi4.c:1336:11: warning: unused variable 'pdnml' [-Wunused-variable] mmdbapi4.c:1332:22: warning: unused variable 'pbsmTemp' [-Wunused-variable] mmdbapi4.c: In function 'WriteAsnModelList': mmdbapi4.c:1505:14: warning: unused variable 'paioAIP' [-Wunused-variable] mmdbapi4.c:1502:11: warning: unused variable 'pmldThis' [-Wunused-variable] mmdbapi4.c:1498:11: warning: unused variable 'pdnmlThis' [-Wunused-variable] mmdbapi4.c:1496:22: warning: unused variable 'pbsmThis' [-Wunused-variable] mmdbapi4.c:1495:17: warning: unused variable 'pBSThis' [-Wunused-variable] mmdbapi4.c:1494:13: warning: unused variable 'bFirst' [-Wunused-variable] mmdbapi4.c:1493:10: warning: unused variable 'iTest' [-Wunused-variable] mmdbapi4.c: In function 'BiostrucAnnotSetToSeqAnnot': mmdbapi4.c:1741:19: warning: unused variable 'loc1' [-Wunused-variable] mmdbapi4.c: In function 'WriteAsnModelList': mmdbapi4.c:1503:13: warning: 'bRet' may be used uninitialized in this function [-Wuninitialized] mmdbapi4.c: In function 'BiostrucAnnotSetToSeqAnnot': mmdbapi4.c:1872:20: warning: 'slavesip' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF mmdbentr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF vastsubs.c vastsubs.c: In function 'LoadSubsetTable': vastsubs.c:212:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:239:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:258:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:287:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:296:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:302:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:304:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] vastsubs.c:202:16: warning: 'len' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF prunebsc.c prunebsc.c: In function 'PruneFeatureSet': prunebsc.c:220:22: warning: variable 'bsfpDie' set but not used [-Wunused-but-set-variable] prunebsc.c: In function 'PruneModel': prunebsc.c:272:30: warning: variable 'mcsDie' set but not used [-Wunused-but-set-variable] prunebsc.c: In function 'PruneBiostruc': prunebsc.c:559:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] prunebsc.c:574:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] prunebsc.c:663:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] prunebsc.c:666:21: warning: 'feature_name' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:649:23: warning: 'pirbnew' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:591:26: warning: 'currenthet' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:701:34: warning: 'mol_id' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:562:16: warning: 'chnid' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:182:7: warning: 'mtype' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:173:8: note: 'mtype' was declared here prunebsc.c:204:25: warning: 'currenthet' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:171:47: note: 'currenthet' was declared here prunebsc.c:110:7: warning: 'mtype' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:102:8: note: 'mtype' was declared here prunebsc.c:127:25: warning: 'currentbp' may be used uninitialized in this function [-Wuninitialized] prunebsc.c:100:38: note: 'currentbp' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objcdd.c objcdd.c: In function 'CddIdFree': objcdd.c:53:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'CddIdAsnRead': objcdd.c:85:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddIdSetAsnRead': objcdd.c:248:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:245:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddIdSetAsnWrite': objcdd.c:301:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddAsnRead': objcdd.c:401:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'CddSetAsnRead': objcdd.c:796:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:793:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddSetAsnWrite': objcdd.c:849:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddTreeAsnRead': objcdd.c:932:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:931:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddTreeSetAsnRead': objcdd.c:1143:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:1140:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddTreeSetAsnWrite': objcdd.c:1196:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddPrefNodesAsnRead': objcdd.c:1276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:1275:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddPrefNodesAsnWrite': objcdd.c:1365:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddProjectAsnRead': objcdd.c:1472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'CddOrgRefAsnRead': objcdd.c:1661:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:1660:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddOrgRefSetAsnRead': objcdd.c:1830:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:1827:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddOrgRefSetAsnWrite': objcdd.c:1883:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddPrefNodeDescrFree': objcdd.c:1923:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'CddPrefNodeDescrAsnRead': objcdd.c:1958:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddPrefNodeDescrSetAsnRead': objcdd.c:2121:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:2118:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddPrefNodeDescrSetAsnWrite': objcdd.c:2174:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'GlobalIdAsnRead': objcdd.c:2253:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:2252:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddRepeatAsnRead': objcdd.c:2439:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:2438:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddBookRefAsnRead': objcdd.c:2615:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:2614:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddDescrSetAsnRead': objcdd.c:3170:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:3167:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'CddDescrSetAsnWrite': objcdd.c:3223:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'MatrixAsnRead': objcdd.c:3301:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'TriangleAsnRead': objcdd.c:3489:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'UpdateCommentFree': objcdd.c:3625:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'UpdateCommentAsnRead': objcdd.c:3669:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'UpdateAlignAsnRead': objcdd.c:3873:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'RejectIdAsnRead': objcdd.c:4047:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'RejectIdAsnWrite': objcdd.c:4122:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'FeatureEvidenceFree': objcdd.c:4170:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'FeatureEvidenceAsnRead': objcdd.c:4214:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'AlignAnnotAsnRead': objcdd.c:4419:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'AlignAnnotSetAsnRead': objcdd.c:4587:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:4584:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'AlignAnnotSetAsnWrite': objcdd.c:4640:12: warning: unused variable 'av' [-Wunused-variable] objcdd.c: In function 'DomainParentAsnRead': objcdd.c:4718:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:4717:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'SequenceTreeAsnRead': objcdd.c:4898:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:4897:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'AlgorithmTypeAsnRead': objcdd.c:5085:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:5084:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'SeqTreeNodeAsnRead': objcdd.c:5387:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:5386:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'Children_footprintAsnRead': objcdd.c:5572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:5571:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'NodeAnnotationAsnRead': objcdd.c:5862:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:5861:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddViewerRectAsnRead': objcdd.c:6027:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:6026:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: In function 'CddViewerAsnRead': objcdd.c:6208:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c: In function 'CddScriptAsnRead': objcdd.c:6382:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objcdd.c:6381:12: warning: unused variable 'isError' [-Wunused-variable] objcdd.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] objcdd.c: In function 'CddDescrAsnRead': objcdd.c:2994:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF cddutil.c cddutil.c: In function 'CddGetPmIds': cddutil.c:649:17: warning: unused variable 'bRefOpen' [-Wunused-variable] cddutil.c: In function 'CddGetAnnotNames': cddutil.c:807:19: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddCheckForRepeats': cddutil.c:1034:7: warning: the address of 'CddHasConsensus' will always evaluate as 'true' [-Waddress] cddutil.c:1013:23: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddMSLDenDiagToMSLDenSeg': cddutil.c:1663:30: warning: variable 'lasts' set but not used [-Wunused-but-set-variable] cddutil.c:1663:23: warning: variable 'lastm' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'SeqAlignInform': cddutil.c:1938:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddAlignInform': cddutil.c:2125:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddPssmInform': cddutil.c:2248:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddPosFreqInform': cddutil.c:2306:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddDenDiagCposComputation': cddutil.c:2368:33: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable] cddutil.c:2365:25: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddCposComputation': cddutil.c:2571:33: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable] cddutil.c:2568:25: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddRetrieveBioseqById': cddutil.c:3379:15: warning: unused variable 'retcode' [-Wunused-variable] cddutil.c:3377:15: warning: unused variable 'uid' [-Wunused-variable] cddutil.c: In function 'CddConsensus': cddutil.c:3853:49: warning: variable 'm_end' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddCposCompPart1': cddutil.c:4247:25: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddGetNewIndexForThreading': cddutil.c:4392:14: warning: unused variable 'Index' [-Wunused-variable] cddutil.c: In function 'CddCposComp': cddutil.c:4474:33: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddDenDiagCposComp2KBP': cddutil.c:4745:59: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable] cddutil.c: In function 'CddDumpTaxLinks': cddutil.c:5727:16: warning: unused variable 'txid' [-Wunused-variable] cddutil.c: At top level: cddutil.c:6267:1: warning: "/*" within comment [-Wcomment] ../include/cdd.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/cdd.h:341:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/cdd.h:342:19: warning: 'at' defined but not used [-Wunused-variable] ../include/cdd.h:343:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objcdd.h:642:37: warning: 'Children_childrenFree' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:643:37: warning: 'Children_childrenAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:644:24: warning: 'Children_childrenAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:666:38: warning: 'Children_footprintFree' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:667:38: warning: 'Children_footprintNew' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:668:38: warning: 'Children_footprintAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:669:24: warning: 'Children_footprintAsnWrite' declared 'static' but never defined [-Wunused-function] cddutil.c:4661:16: warning: 'CddtakeMatrixCheckpoint' defined but not used [-Wunused-function] ../include/cddutil.h:589:25: warning: 'CddFindSeqIdInSeqLoc' declared 'static' but never defined [-Wunused-function] cddutil.c: In function 'CddBioseqCopy': cddutil.c:1362:21: warning: 'head' may be used uninitialized in this function [-Wuninitialized] cddutil.c: In function 'CddCopyMSLDenDiag': cddutil.c:3015:25: warning: 'ddpTail' may be used uninitialized in this function [-Wuninitialized] cddutil.c: In function 'CddCalculateTriangle': cddutil.c:3535:24: warning: 'buffer1' may be used uninitialized in this function [-Wuninitialized] cddutil.c:3524:22: warning: 'pscTail' may be used uninitialized in this function [-Wuninitialized] cddutil.c: In function 'CddDenDiagCposComp2KBP': cddutil.c:4764:27: warning: 'pssm' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF cddposutil.c cddposutil.c: In function 'CddfindThreshSequences': cddposutil.c:359:15: warning: variable 'thisId' set but not used [-Wunused-but-set-variable] cddposutil.c: In function 'CddfindDenseDiagThreshSequences': cddposutil.c:386:16: warning: variable 'thisId' set but not used [-Wunused-but-set-variable] cddposutil.c: In function 'CddposFreqsToMatrix': cddposutil.c:1038:45: warning: operation on '*(*(posSearch->posPrivateMatrix + (unsigned int)((unsigned int)length * 4u)) + (unsigned int)((unsigned int)a * 4u))' may be undefined [-Wsequence-point] cddposutil.c: In function 'CddposDenseDiagDemographics': cddposutil.c:1094:17: warning: unused variable 'is_new_id' [-Wunused-variable] cddposutil.c:1093:17: warning: unused variable 'segIndex' [-Wunused-variable] cddposutil.c:1092:25: warning: variable 'startS' set but not used [-Wunused-but-set-variable] cddposutil.c:1092:17: warning: variable 'startQ' set but not used [-Wunused-but-set-variable] cddposutil.c:1091:17: warning: unused variable 'curId' [-Wunused-variable] cddposutil.c: In function 'CddSetUpSearchInternalByLoc': cddposutil.c:1246:39: warning: unused variable 'last_length_adjustment' [-Wunused-variable] cddposutil.c: In function 'CddSetUpSearchWithReadDb': cddposutil.c:2040:43: warning: variable 'final_db_seq' set but not used [-Wunused-but-set-variable] cddposutil.c:2006:28: warning: unused variable 'virtual_oid_bit' [-Wunused-variable] cddposutil.c:2006:19: warning: unused variable 'oid_bit' [-Wunused-variable] cddposutil.c:2005:30: warning: unused variable 'virtual_mask_index' [-Wunused-variable] cddposutil.c:2005:18: warning: unused variable 'mask_index' [-Wunused-variable] cddposutil.c:2004:19: warning: unused variable 'alias_oidlist' [-Wunused-variable] cddposutil.c:2003:19: warning: unused variable 'use_private_gilist' [-Wunused-variable] cddposutil.c:2000:20: warning: unused variable 'vnp' [-Wunused-variable] cddposutil.c: In function 'CddposReadAlignment': cddposutil.c:2226:16: warning: variable 'alignPos' set but not used [-Wunused-but-set-variable] cddposutil.c: At top level: ../include/objcdd.h:642:37: warning: 'Children_childrenFree' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:643:37: warning: 'Children_childrenAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:644:24: warning: 'Children_childrenAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:666:38: warning: 'Children_footprintFree' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:667:38: warning: 'Children_footprintNew' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:668:38: warning: 'Children_footprintAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:669:24: warning: 'Children_footprintAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:507:27: warning: 'CddReadBlastOptions' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:512:13: warning: 'BlastKarlinBlkCopy' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:516:13: warning: 'CddputMatrixKbp' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:518:13: warning: 'CddputMatrixMatrix' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:522:16: warning: 'CddtakeMatrixCheckpoint' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:589:25: warning: 'CddFindSeqIdInSeqLoc' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:591:25: warning: 'CddRelocateSeqLoc' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:592:25: warning: 'CddSeqLocInExpAlign' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:593:25: warning: 'CddFindSeqIdInAlignAnnot' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:623:24: warning: 'HitYet' declared 'static' but never defined [-Wunused-function] ../include/cddutil.h:649:16: warning: 'CddFixForXML' declared 'static' but never defined [-Wunused-function] cddposutil.c:971:13: warning: 'CddfreePosFreqs' defined but not used [-Wunused-function] cddposutil.c: In function 'CddposComputeSequenceWeights': cddposutil.c:840:35: warning: 'intervalSigma' may be used uninitialized in this function [-Wuninitialized] cddposutil.c:832:68: warning: 'Sigma' may be used uninitialized in this function [-Wuninitialized] cddposutil.c: In function 'CddposDemographics': cddposutil.c:1199:24: warning: 'retrievalOffset' may be used uninitialized in this function [-Wuninitialized] cddposutil.c: In function 'CddSetUpSearchWithReadDb': cddposutil.c:1740:48: warning: 'min_query_length' may be used uninitialized in this function [-Wuninitialized] cddposutil.c:1246:63: note: 'min_query_length' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF objmime.c objmime.c: In function 'NcbiMimeAsn1Free': objmime.c:123:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmime.c: In function 'NcbiMimeAsn1AsnRead': objmime.c:170:12: warning: unused variable 'isError' [-Wunused-variable] objmime.c: In function 'Data_dataFree': objmime.c:377:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmime.c: In function 'EntrezGeneralAsnRead': objmime.c:423:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c:422:12: warning: unused variable 'isError' [-Wunused-variable] objmime.c: In function 'Data_dataAsnRead': objmime.c:517:12: warning: unused variable 'isError' [-Wunused-variable] objmime.c: In function 'BiostrucAlignAsnRead': objmime.c:791:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c: In function 'BiostrucAlignSeqAsnRead': objmime.c:1016:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c: In function 'BiostrucSeqAsnRead': objmime.c:1208:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c: In function 'BiostrucSeqsAsnRead': objmime.c:1402:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c: In function 'SeqAlignData_seq_align_dataFree': objmime.c:1599:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmime.c: In function 'BiostrucSeqsAlignsCddAsnRead': objmime.c:1633:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c: In function 'SeqAlignData_seq_align_dataAsnRead': objmime.c:1720:12: warning: unused variable 'isError' [-Wunused-variable] objmime.c: In function 'BundleSeqsAlignsAsnRead': objmime.c:1954:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmime.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:642:37: warning: 'Children_childrenFree' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:643:37: warning: 'Children_childrenAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:644:24: warning: 'Children_childrenAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:666:38: warning: 'Children_footprintFree' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:667:38: warning: 'Children_footprintNew' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:668:38: warning: 'Children_footprintAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objcdd.h:669:24: warning: 'Children_footprintAsnWrite' declared 'static' but never defined [-Wunused-function] objmime.c: In function 'NcbiMimeAsn1AsnRead': objmime.c:232:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmime.c: In function 'EntrezGeneralAsnRead': objmime.c:579:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmime.c:516:10: note: 'choice' was declared here objmime.c: In function 'BiostrucSeqsAlignsCddAsnRead': objmime.c:1766:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmime.c:1719:10: note: 'choice' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF strucapi.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF thrdalgs.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF thrdatd.c thrdatd.c: In function 'atd': thrdatd.c:198:8: warning: variable 'hh' set but not used [-Wunused-but-set-variable] thrdatd.c:195:6: warning: variable 'rf' set but not used [-Wunused-but-set-variable] thrdatd.c:185:14: warning: unused variable 'm' [-Wunused-variable] thrdatd.c:185:12: warning: unused variable 'l' [-Wunused-variable] thrdatd.c:168:6: warning: variable 'nrp' set but not used [-Wunused-but-set-variable] thrdatd.c:167:6: warning: variable 'nrr' set but not used [-Wunused-but-set-variable] thrdatd.c: In function 'PrintThdTbl': thrdatd.c:1804:3: warning: too many arguments for format [-Wformat-extra-args] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF thrdbwfi.c thrdbwfi.c: In function 'bwfi': thrdbwfi.c:114:1: warning: control reaches end of non-void function [-Wreturn-type] thrdbwfi.c:102:13: warning: 'nt' may be used uninitialized in this function [-Wuninitialized] thrdbwfi.c:89:20: warning: 'nz' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF thrdcpal.c thrdcpal.c: In function 'cpal': thrdcpal.c:210:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF thrdcpll.c thrdcpll.c: In function 'cpll': thrdcpll.c:74:5: warning: variable 'nrt' set but not used [-Wunused-but-set-variable] thrdcpll.c:229:1: warning: control reaches end of non-void function [-Wreturn-type] thrdcpll.c:220:15: warning: 'r2' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF thrdcprl.c thrdcprl.c: In function 'cprl': thrdcprl.c:261:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF thrdcxei.c thrdcxei.c: In function 'cxei': thrdcxei.c:94:15: warning: variable 'ms' set but not used [-Wunused-but-set-variable] thrdcxei.c:205:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF thrddgri.c thrddgri.c: In function 'g': thrddgri.c:72:5: warning: variable 's0' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF thrdrsmp.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF thrdsal0.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF thrdsalr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF thrdsalu.c thrdsalu.c: In function 'salu': thrdsalu.c:83:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF thrdsgoi.c thrdsgoi.c: In function 'sgoi': thrdsgoi.c:123:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF thrdslo0.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF thrdslor.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF thrdslou.c thrdslou.c: In function 'slou': thrdslou.c:114:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF thrdspci.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF thrdspea.c thrdspea.c: In function 'spea': thrdspea.c:91:9: warning: variable 'nrt' set but not used [-Wunused-but-set-variable] thrdspea.c:189:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF thrdspel.c thrdspel.c: In function 'spel': thrdspel.c:88:9: warning: variable 'nrt' set but not used [-Wunused-but-set-variable] thrdspel.c:188:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF thrdspni.c thrdspni.c: In function 'spni': thrdspni.c:238:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF thrdttb0.c thrdttb0.c: In function 'ttb0': thrdttb0.c:75:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF thrdttbi.c thrdttbi.c: In function 'ttbi': thrdttbi.c:124:3: warning: 'sm' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF thrdzsc.c thrdzsc.c: In function 'zsc': thrdzsc.c:107:7: warning: unused variable 'gs' [-Wunused-variable] thrdzsc.c:102:18: warning: unused variable 'zsc' [-Wunused-variable] thrdzsc.c:95:5: warning: unused variable 'ps' [-Wunused-variable] thrdzsc.c:80:5: warning: unused variable 'temp' [-Wunused-variable] thrdzsc.c:79:2: warning: unused variable 'kk' [-Wunused-variable] thrdzsc.c:369:1: warning: control reaches end of non-void function [-Wreturn-type] thrdzsc.c:357:39: warning: 'tg_max' may be used uninitialized in this function [-Wuninitialized] thrdzsc.c:64:7: warning: 'tls' may be used uninitialized in this function [-Wuninitialized] thrdzsc.c:176:20: warning: 'k' may be used uninitialized in this function [-Wuninitialized] thrdzsc.c:64:7: warning: 'tlf' may be used uninitialized in this function [-Wuninitialized] rm -f libncbimmdb.a ar cru libncbimmdb.a corematx.o dvncode.o objmmdb1.o objmmdb2.o objmmdb3.o objcn3d.o mmdbapi.o mmdbapi1.o mmdbapi2.o mmdbapi3.o mmdbapi4.o mmdbentr.o vastsubs.o prunebsc.o objcdd.o cddutil.o cddposutil.o objmime.o strucapi.o thrdalgs.o thrdatd.o thrdbwfi.o thrdcpal.o thrdcpll.o thrdcprl.o thrdcxei.o thrddgri.o thrdrsmp.o thrdsal0.o thrdsalr.o thrdsalu.o thrdsgoi.o thrdslo0.o thrdslor.o thrdslou.o thrdspci.o thrdspea.o thrdspel.o thrdspni.o thrdttb0.o thrdttbi.o thrdzsc.o cp -p libncbimmdb.a ../lib ranlib ../lib/libncbimmdb.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF csim.c csim.c: In function 'set_pam_200': csim.c:165:2: warning: missing braces around initializer [-Wmissing-braces] csim.c:165:2: warning: (near initialization for 'wgts[0]') [-Wmissing-braces] csim.c:196:8: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:196:8: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c: In function 'set_pam_file': csim.c:228:12: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:228:12: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c: In function 'big_pass': csim.c:668:7: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:692:5: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c: In function 'diff1': csim.c:799:7: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:805:13: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:849:7: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:853:4: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:853:4: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:874:7: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:878:4: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:878:4: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:893:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c: In function 'locate': csim.c:974:7: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:991:5: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:1030:8: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:1043:5: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:1062:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1062:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1072:9: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1072:9: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1084:8: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:1110:12: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:1129:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1129:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1139:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1139:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c:1144:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] csim.c: In function 'small_pass': csim.c:1186:7: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c:1212:5: warning: array subscript has type 'char' [-Wchar-subscripts] csim.c: In function 'display': csim.c:1360:5: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] csim.c: In function 'set_pam_file': csim.c:227:18: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] csim.c: In function 'SIM': csim.c:1071:62: warning: 'dj' may be used uninitialized in this function [-Wuninitialized] csim.c:928:23: note: 'dj' was declared here csim.c:1071:51: warning: 'di' may be used uninitialized in this function [-Wuninitialized] csim.c:928:19: note: 'di' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF db_slist.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF dust.c dust.c: In function 'slpDust.isra.0': dust.c:655:23: warning: 'sintp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_dust.c blast_dust.c: In function 's_SlpDust': blast_dust.c:348:23: warning: 'sintp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF falign.c falign.c: In function 'fbld_table': falign.c:490:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:494:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'bbld_table': falign.c:517:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:521:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'rcbld_table': falign.c:544:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:548:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'ex_table': falign.c:567:2: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'free_all': falign.c:668:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'scan': falign.c:688:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:694:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:710:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c:719:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'fscan': falign.c:763:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:769:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'bscan': falign.c:794:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:800:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'rfscan': falign.c:870:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:876:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:881:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c:889:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'trcscan': falign.c:1476:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c:1482:3: warning: array subscript has type 'char' [-Wchar-subscripts] falign.c: In function 'rclocal': falign.c:1547:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'enterS': falign.c:1897:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'local': falign.c:1958:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'align': falign.c:1999:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'calign': falign.c:2054:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] falign.c: In function 'malign': falign.c:2109:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF g_any.c g_any.c: In function 'k_align': g_any.c:212:3: warning: array subscript has type 'char' [-Wchar-subscripts] g_any.c:229:4: warning: array subscript has type 'char' [-Wchar-subscripts] g_any.c:319:3: warning: array subscript has type 'char' [-Wchar-subscripts] g_any.c:322:3: warning: array subscript has type 'char' [-Wchar-subscripts] g_any.c: In function 'z_ALIGN': g_any.c:367:7: warning: variable 'check_score' set but not used [-Wunused-but-set-variable] g_any.c: In function 'CHECK_SCORE': g_any.c:492:3: warning: array subscript has type 'char' [-Wchar-subscripts] g_any.c:492:3: warning: array subscript has type 'char' [-Wchar-subscripts] g_any.c: At top level: g_any.c:428:13: warning: 'ALINE' defined but not used [-Wunused-variable] g_any.c:428:24: warning: 'BLINE' defined but not used [-Wunused-variable] g_any.c:428:35: warning: 'CLINE' defined but not used [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF sim2.c sim2.c: In function 'SIM2': sim2.c:19:16: warning: unused variable 'compB' [-Wunused-variable] sim2.c:17:26: warning: unused variable 'sapC' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF sim3.c sim3.c: In function 'locate': sim3.c:103:3: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:105:3: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:113:17: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:115:17: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:129:17: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:133:17: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:152:3: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c:155:17: warning: array subscript has type 'char' [-Wchar-subscripts] sim3.c: At top level: sim3.c:806:13: warning: 'Print_Script' defined but not used [-Wunused-function] sim3.c:1048:13: warning: 'get_start_pos' defined but not used [-Wunused-function] sim3.c:1056:13: warning: 'get_current_pos' defined but not used [-Wunused-function] sim3.c:1067:16: warning: 'is_end_seg' defined but not used [-Wunused-function] sim3.c: In function 'locate': sim3.c:230:17: warning: 'paired_bj' may be used uninitialized in this function [-Wuninitialized] sim3.c:229:6: warning: 'paired_fj' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF sim4.c sim4.c: In function 'sim4x': sim4.c:630:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] sim4.c: In function 'greedy': sim4.c:1770:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] sim4.c:1794:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] sim4.c:1838:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] sim4.c:1962:19: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] sim4.c:1991:19: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] sim4.c:2037:19: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] sim4.c: In function 'DISPLAY': sim4.c:2625:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] sim4.c: At top level: sim4.c:2563:13: warning: 'S2A' defined but not used [-Wunused-function] sim4.c:2592:13: warning: 'DISPLAY' defined but not used [-Wunused-function] sim4.c:2499:13: warning: 'Print_Script' defined but not used [-Wunused-function] sim4.c: In function 'locate': sim4.c:2919:19: warning: 'paired_bj' may be used uninitialized in this function [-Wuninitialized] sim4.c:2918:7: warning: 'paired_fj' may be used uninitialized in this function [-Wuninitialized] sim4.c: In function 'sim4x': sim4.c:2112:37: warning: 'forth' may be used uninitialized in this function [-Wuninitialized] sim4.c:1609:18: note: 'forth' was declared here sim4.c:2112:22: warning: 'back' may be used uninitialized in this function [-Wuninitialized] sim4.c:1609:12: note: 'back' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF simutil.c simutil.c: In function 'make_align': simutil.c:495:9: warning: variable 'strand' set but not used [-Wunused-but-set-variable] simutil.c: At top level: simutil.c:344:17: warning: 'convert' defined but not used [-Wunused-function] simutil.c:814:16: warning: 're_cal_score' defined but not used [-Wunused-function] simutil.c:848:16: warning: 'is_alu_seq' defined but not used [-Wunused-function] simutil.c: In function 'sort_align_list': simutil.c:602:28: warning: 'score2' may be used uninitialized in this function [-Wuninitialized] simutil.c:602:28: warning: 'score1' may be used uninitialized in this function [-Wuninitialized] simutil.c: In function 'get_top_K_alignment': simutil.c:659:23: warning: 'score' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF slist.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF sec.c sec.c: In function 'Region': sec.c:268:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:268:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:292:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:292:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:321:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:321:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:345:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:345:5: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:428:8: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:428:8: warning: array subscript has type 'char' [-Wchar-subscripts] sec.c:504:11: warning: 'old_l' may be used uninitialized in this function [-Wuninitialized] sec.c:494:13: warning: 'ppj' may be used uninitialized in this function [-Wuninitialized] sec.c:493:7: warning: 'ppi' may be used uninitialized in this function [-Wuninitialized] sec.c:394:31: warning: 'i' may be used uninitialized in this function [-Wuninitialized] sec.c:503:7: warning: 'pi' may be used uninitialized in this function [-Wuninitialized] sec.c:513:13: warning: 'ej' may be used uninitialized in this function [-Wuninitialized] sec.c:400:8: warning: 'ei' may be used uninitialized in this function [-Wuninitialized] sec.c:511:13: warning: 'bj' may be used uninitialized in this function [-Wuninitialized] sec.c:468:13: warning: 'bi' may be used uninitialized in this function [-Wuninitialized] sec.c:513:11: warning: 'RB' may be used uninitialized in this function [-Wuninitialized] sec.c:494:13: warning: 'LB' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF tfuns.c tfuns.c: In function 'find_orf': tfuns.c:846:26: warning: unused variable 'into' [-Wunused-variable] tfuns.c:846:13: warning: unused variable 'infrom' [-Wunused-variable] tfuns.c: At top level: tfuns.c:956:13: warning: 'find_orf_from_circle' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF toasn3.c toasn3.c: In function 'FindOrg': toasn3.c:1270:17: warning: variable 'len' set but not used [-Wunused-but-set-variable] toasn3.c: In function 'CheckQualsWithComm': toasn3.c:1551:18: warning: variable 'orp' set but not used [-Wunused-but-set-variable] toasn3.c: In function 'CheckQuals': toasn3.c:1588:18: warning: variable 'orp' set but not used [-Wunused-but-set-variable] toasn3.c: In function 'CountSourceFeat': toasn3.c:2374:13: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] toasn3.c:2365:19: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] toasn3.c: In function 'TASNTrimInternalSemicolons': toasn3.c:3945:12: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] toasn3.c: In function 'ImpFeatToProtRef': toasn3.c:4610:13: warning: variable 'lfree' set but not used [-Wunused-but-set-variable] toasn3.c: In function 'RemovePeptideImpFeats': toasn3.c:4876:24: warning: variable 'ifp' set but not used [-Wunused-but-set-variable] toasn3.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] toasn3.c:1531:16: warning: 'GetQualValue' defined but not used [-Wunused-function] toasn3.c: In function 'GetOriginalBeforeAdjustment': toasn3.c:4144:29: warning: 'last' may be used uninitialized in this function [-Wuninitialized] toasn3.c: In function 'FixNucProtSet': toasn3.c:2017:21: warning: 'bseg' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF toporg.c toporg.c: In function 'ChkSegset': toporg.c:61:51: warning: variable 'is_title' set but not used [-Wunused-but-set-variable] toporg.c:60:17: warning: variable 'orp' set but not used [-Wunused-but-set-variable] toporg.c:57:17: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] toporg.c:52:17: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] toporg.c: In function 'ChkNucProt': toporg.c:593:51: warning: variable 'is_title' set but not used [-Wunused-but-set-variable] toporg.c: In function 'StripBSfromParts': toporg.c:1279:17: warning: variable 'empty' set but not used [-Wunused-but-set-variable] toporg.c:1278:17: warning: variable 'bsmp' set but not used [-Wunused-but-set-variable] toporg.c:1277:29: warning: variable 'set_vnp' set but not used [-Wunused-but-set-variable] toporg.c: In function 'MapsToGenref': toporg.c:1943:17: warning: variable 'loc' set but not used [-Wunused-but-set-variable] toporg.c:1938:17: warning: variable 'descr' set but not used [-Wunused-but-set-variable] toporg.c: In function 'FindOldLineage': toporg.c:2520:17: warning: variable 'lineage' set but not used [-Wunused-but-set-variable] toporg.c: In function 'StripBadTitleFromProteinProducts': toporg.c:4967:22: warning: variable 'tech' set but not used [-Wunused-but-set-variable] toporg.c: At top level: toporg.c:3009:13: warning: 'BarCodeTechToKeyword' defined but not used [-Wunused-function] toporg.c: In function 'MergeEquivCitSubs': toporg.c:3830:16: warning: 'csp1' may be used uninitialized in this function [-Wuninitialized] toporg.c: In function 'CheckMaps': toporg.c:1714:11: warning: 'to' may be used uninitialized in this function [-Wuninitialized] toporg.c:1695:24: note: 'to' was declared here toporg.c:1713:13: warning: 'from' may be used uninitialized in this function [-Wuninitialized] toporg.c:1695:18: note: 'from' was declared here toporg.c: In function 'ConvertSegSetToDeltaSeq': toporg.c:6667:29: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF pobutil.c pobutil.c: In function 'build_repeat_feat': pobutil.c:187:7: warning: unused variable 'c' [-Wunused-variable] pobutil.c: In function 'merge_StdSeg': pobutil.c:1033:7: warning: variable 'start_1' set but not used [-Wunused-but-set-variable] pobutil.c:1031:7: warning: unused variable 'overlap' [-Wunused-variable] pobutil.c: In function 'AluFeat': pobutil.c:2431:10: warning: variable 'my_userdata' set but not used [-Wunused-but-set-variable] In file included from /usr/include/string.h:642:0, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from ../include/pobutil.h:7, from pobutil.c:3: In function 'memset', inlined from 'FindHumanRepeats' at pobutil.c:2380:8: /usr/include/i386-linux-gnu/bits/string3.h:82:30: warning: call to '__warn_memset_zero_len' declared with attribute warning: memset used with constant zero length parameter; this could be due to transposed parameters [enabled by default] In function 'memset', inlined from 'FindHumanRepeats' at pobutil.c:2381:8: /usr/include/i386-linux-gnu/bits/string3.h:82:30: warning: call to '__warn_memset_zero_len' declared with attribute warning: memset used with constant zero length parameter; this could be due to transposed parameters [enabled by default] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF stsutil.c stsutil.c: In function 'InitSTSSearch_r': stsutil.c:270:10: warning: unused variable 'StsCount' [-Wunused-variable] stsutil.c: In function 'GetSTSEntry': stsutil.c:635:13: warning: variable 'p' set but not used [-Wunused-but-set-variable] stsutil.c: In function 'STSCalculateHash': stsutil.c:753:9: warning: array subscript has type 'char' [-Wchar-subscripts] stsutil.c: In function 'STSReverse': stsutil.c:771:9: warning: array subscript has type 'char' [-Wchar-subscripts] stsutil.c: In function 'InitHashTable': stsutil.c:910:21: warning: variable 'sts_uid' set but not used [-Wunused-but-set-variable] stsutil.c:910:13: warning: variable 'gb_uid' set but not used [-Wunused-but-set-variable] stsutil.c:908:23: warning: variable 'gi' set but not used [-Wunused-but-set-variable] stsutil.c:908:10: warning: variable 'id_sts' set but not used [-Wunused-but-set-variable] stsutil.c:907:23: warning: unused variable 'error' [-Wunused-variable] stsutil.c: At top level: stsutil.c:892:13: warning: 'STSHashInitFree' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF suggadj.c suggadj.c: In function 'score_possible_splice_sites': suggadj.c:874:1: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:875:1: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:878:1: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:879:1: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c: In function 'check_split_codon': suggadj.c:985:1: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:986:2: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:987:2: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:998:1: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:999:2: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:1000:2: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c: In function 'overlapping_fixer': suggadj.c:1370:5: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:1371:6: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:1373:6: warning: array subscript has type 'char' [-Wchar-subscripts] suggadj.c:1375:6: warning: array subscript has type 'char' [-Wchar-subscripts] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF suggest.c suggest.c: In function 'get_frames': suggest.c:458:4: warning: array subscript has type 'char' [-Wchar-subscripts] suggest.c:458:4: warning: array subscript has type 'char' [-Wchar-subscripts] suggest.c: At top level: suggest.c:1222:1: warning: 'fprintf_m_stk_entry' defined but not used [-Wunused-function] suggest.c:1331:13: warning: 'ReportSuggestIntervalsError' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF suggslp.c suggslp.c: In function 'MakeReverseSequence': suggslp.c:190:3: warning: array subscript has type 'char' [-Wchar-subscripts] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast.c blast.c: In function 'BlastReevaluateWithAmbiguities': blast.c:2954:24: warning: variable 'query_end' set but not used [-Wunused-but-set-variable] blast.c:2949:16: warning: variable 'hspcnt' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastGetVirtualOIDList': blast.c:3179:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] blast.c: In function 'BlastGetDbChunk': blast.c:3210:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] blast.c: In function 'BlastCreateQueryDNAP': blast.c:4100:11: warning: variable 'strand_option' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastWordFinder_contig': blast.c:7094:16: warning: variable 'bits_to_shift' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastWordExtend': blast.c:7835:46: warning: variable 'leftscore' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastNewWordExtend': blast.c:7982:46: warning: variable 'leftscore' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastNtWordFinder_mh': blast.c:8843:23: warning: variable 'bits_to_shift' set but not used [-Wunused-but-set-variable] blast.c:8842:103: warning: variable 'compression_factor' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastNtWordFinder': blast.c:9076:14: warning: variable 'bits_to_shift' set but not used [-Wunused-but-set-variable] blast.c: In function 'BlastSaveCurrentHitlist': blast.c:10115:11: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] blast.c:9785:7: warning: variable 'query_length' set but not used [-Wunused-but-set-variable] blast.c: In function 'SumHSPEvalue': blast.c:10588:9: warning: variable 'gap_size' set but not used [-Wunused-but-set-variable] blast.c: In function 'link_hsps': blast.c:11267:10: warning: variable 'frame_change' set but not used [-Wunused-but-set-variable] blast.c: In function 'blastMergeFilterLocs': blast.c:3983:16: warning: 'dup_slp' may be used uninitialized in this function [-Wuninitialized] blast.c: In function 'BlastLinkHsps': blast.c:10455:41: warning: 'orig_hitlist' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blastutl.c blastutl.c: In function 'BlastSeqLocFilterEx': blastutl.c:7554:11: warning: statement with no effect [-Wunused-value] blastutl.c: In function 'BlastPreliminaryGappedScore': blastutl.c:9853:30: warning: variable 'query_length' set but not used [-Wunused-but-set-variable] blastutl.c: In function 'BlastGetGappedScore': blastutl.c:10282:11: warning: statement with no effect [-Wunused-value] blastutl.c: In function 'BlastNtFindWords': blastutl.c:11445:10: warning: 'end' may be used uninitialized in this function [-Wuninitialized] blastutl.c: In function 'BlastNewFindWordsEx': blastutl.c:12129:23: warning: 'start_score' may be used uninitialized in this function [-Wuninitialized] blastutl.c:12118:29: warning: 'first_score' may be used uninitialized in this function [-Wuninitialized] blastutl.c:12110:23: warning: 'diff' may be used uninitialized in this function [-Wuninitialized] blastutl.c: In function 'BlastNewFindWords_Old': blastutl.c:11931:18: warning: 'start_score' may be used uninitialized in this function [-Wuninitialized] blastutl.c:11924:17: warning: 'first_score' may be used uninitialized in this function [-Wuninitialized] blastutl.c:11915:11: warning: 'diff' may be used uninitialized in this function [-Wuninitialized] blastutl.c: In function 'BlastFindWords': blastutl.c:11623:8: warning: 'stop' may be used uninitialized in this function [-Wuninitialized] blastutl.c:11717:15: warning: 'start_score' may be used uninitialized in this function [-Wuninitialized] blastutl.c:11704:17: warning: 'first_score' may be used uninitialized in this function [-Wuninitialized] blastutl.c:11695:11: warning: 'diff' may be used uninitialized in this function [-Wuninitialized] blastutl.c: In function 'RealBlastGetGappedAlignmentTraceback': blastutl.c:9377:56: warning: 'seqalign_array' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blastool.c blastool.c: In function 'OOFBlastHSPGetNumIdentical': blastool.c:6081:9: warning: variable 'context' set but not used [-Wunused-but-set-variable] blastool.c: In function 'BlastCreateVirtualOIDList': blastool.c:2556:24: warning: 'gilist' may be used uninitialized in this function [-Wuninitialized] blastool.c: In function 'BlastInsertList2Heap': blastool.c:3600:13: warning: 'query_length' may be used uninitialized in this function [-Wuninitialized] blastool.c: In function 'BlastFreeHeap': blastool.c:3692:13: warning: 'query_length' may be used uninitialized in this function [-Wuninitialized] blastool.c: In function 'BLASTFilterOverlapRegions': blastool.c:4531:24: warning: 'next_tail' may be used uninitialized in this function [-Wuninitialized] blastool.c: In function 'BlastPrintAlignInfo': blastool.c:4800:23: warning: 'sap' may be used uninitialized in this function [-Wuninitialized] blastool.c: In function 'MegaBlastPrintAlignInfo': blastool.c:5321:17: warning: 'subject_seq_buffer' may be used uninitialized in this function [-Wuninitialized] blastool.c:5320:17: warning: 'query_seq_buffer' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blastconcat.c blastconcat.c: In function 'BlastMakeFakeBspConcat': blastconcat.c:648:12: warning: variable 'slp' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF splutil.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF gapxdrop.c gapxdrop.c: In function 'ALIGN_EX': gapxdrop.c:864:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] gapxdrop.c:867:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF bandalg0.c bandalg0.c: In function 'g_band0_align': bandalg0.c:273:9: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] bandalg0.c:266:12: warning: 'c' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF bandalg1.c bandalg1.c: In function 'gband_quadratic': bandalg1.c:54:14: warning: variable 'j' set but not used [-Wunused-but-set-variable] bandalg1.c: In function 'g_band1_align': bandalg1.c:205:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] bandalg1.c: In function 'gband_quadratic': bandalg1.c:200:11: warning: 'c' may be used uninitialized in this function [-Wuninitialized] bandalg1.c:164:17: note: 'c' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF bandalg2.c bandalg2.c: In function 'gb_linear_align': bandalg2.c:208:24: warning: variable 'misma' set but not used [-Wunused-but-set-variable] bandalg2.c:208:17: warning: variable 'match' set but not used [-Wunused-but-set-variable] bandalg2.c:207:18: warning: variable 'AA' set but not used [-Wunused-but-set-variable] bandalg2.c:326:9: warning: 'c' may be used uninitialized in this function [-Wuninitialized] bandalg2.c:494:15: warning: 'Y' may be used uninitialized in this function [-Wuninitialized] bandalg2.c:494:15: warning: 'X' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF bandalg3.c bandalg3.c: In function 'gband_linear_qgap': bandalg3.c:54:14: warning: variable 'j' set but not used [-Wunused-but-set-variable] bandalg3.c:292:21: warning: 'Y' may be used uninitialized in this function [-Wuninitialized] bandalg3.c:185:28: note: 'Y' was declared here bandalg3.c:291:3: warning: 'X' may be used uninitialized in this function [-Wuninitialized] bandalg3.c:185:25: note: 'X' was declared here bandalg3.c:217:11: warning: 'c' may be used uninitialized in this function [-Wuninitialized] bandalg3.c:180:17: note: 'c' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF bandalg4.c bandalg4.c: In function 'g_band4_align_small': bandalg4.c:826:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] bandalg4.c:829:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] bandalg4.c:630:8: warning: variable 'band' set but not used [-Wunused-but-set-variable] bandalg4.c: In function 'g_band4_align': bandalg4.c:286:13: warning: 'c' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:534:22: warning: 'Y' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:534:12: warning: 'X' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:544:3: warning: 'k' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:824:27: warning: 'Y' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:640:28: note: 'Y' was declared here bandalg4.c:823:3: warning: 'X' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:640:25: note: 'X' was declared here bandalg4.c:694:10: warning: 'c' may be used uninitialized in this function [-Wuninitialized] bandalg4.c:634:17: note: 'c' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF bandalg5.c bandalg5.c: In function 'gband_q3gap': bandalg5.c:56:14: warning: variable 'j' set but not used [-Wunused-but-set-variable] bandalg5.c: In function 'g_band5_align': bandalg5.c:292:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] bandalg5.c:295:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] bandalg5.c: In function 'gband_q3gap': bandalg5.c:320:20: warning: 'Y' may be used uninitialized in this function [-Wuninitialized] bandalg5.c:146:28: note: 'Y' was declared here bandalg5.c:319:15: warning: 'X' may be used uninitialized in this function [-Wuninitialized] bandalg5.c:146:25: note: 'X' was declared here bandalg5.c:180:11: warning: 'c' may be used uninitialized in this function [-Wuninitialized] bandalg5.c:140:17: note: 'c' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF bandalgn.c bandalgn.c: In function 'ExtendSeqAlign': bandalgn.c:1113:22: warning: variable 'ddp' set but not used [-Wunused-but-set-variable] bandalgn.c: In function 'CC_ExtendSeqAlign': bandalgn.c:1188:22: warning: variable 'ddp' set but not used [-Wunused-but-set-variable] bandalgn.c: At top level: bandalgn.c:699:14: warning: 'HSblastna_to_ncbi4na' defined but not used [-Wunused-variable] bandalgn.c: In function 'LocalBandToEditBlock': bandalgn.c:463:20: warning: 'edit_block' may be used uninitialized in this function [-Wuninitialized] bandalgn.c: In function 'SetLowUpFromBlast': bandalgn.c:1053:14: warning: 'val' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1053:14: warning: 'maxsc' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1060:7: warning: 'alnlen' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1060:7: warning: 'maxlen' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1070:9: warning: 'maxdi_up' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1069:9: warning: 'mindi_low' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1048:10: warning: 'maxdi' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1063:10: warning: 'mindi' may be used uninitialized in this function [-Wuninitialized] bandalgn.c: In function 'GetAlignExtremes': bandalgn.c:1309:7: warning: 'y2' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1308:7: warning: 'y1' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1307:7: warning: 'x2' may be used uninitialized in this function [-Wuninitialized] bandalgn.c:1306:7: warning: 'x1' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blastkar.c blastkar.c:1053:21: warning: 'blosum62_20_values' defined but not used [-Wunused-variable] blastkar.c:1121:13: warning: 'blosum62_20_prefs' defined but not used [-Wunused-variable] blastkar.c:2347:25: warning: 'Dayhoff_prob' defined but not used [-Wunused-variable] blastkar.c:2373:25: warning: 'Altschul_prob' defined but not used [-Wunused-variable] blastkar.c: In function 'BLAST_ScoreBlkNew': blastkar.c:1213:29: warning: 'sctp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF actutils.c actutils.c: In function 'SlideToHit': actutils.c:346:23: warning: variable 'done' set but not used [-Wunused-but-set-variable] actutils.c:346:13: warning: variable 'inIsland' set but not used [-Wunused-but-set-variable] actutils.c: In function 'ResolveSpinConflict': actutils.c:1484:35: warning: unused variable 'row2_conflict' [-Wunused-variable] actutils.c:1484:12: warning: unused variable 'row1_conflict' [-Wunused-variable] actutils.c: In function 'ACT_FindBestAlnByDotPlot': actutils.c:2002:20: warning: variable 'strand' set but not used [-Wunused-but-set-variable] actutils.c:2001:20: warning: variable 'start2' set but not used [-Wunused-but-set-variable] actutils.c:2000:20: warning: variable 'start1' set but not used [-Wunused-but-set-variable] actutils.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] actutils.c:749:13: warning: 'StateTableSearch' defined but not used [-Wunused-function] actutils.c:1375:16: warning: 'am_isa_gap' defined but not used [-Wunused-function] actutils.c:1392:13: warning: 'am_fix_strand' defined but not used [-Wunused-function] actutils.c:1654:16: warning: 'SpinsConflict' defined but not used [-Wunused-function] actutils.c:2927:13: warning: 'MapBioseqToBioseqSpecial' defined but not used [-Wunused-function] actutils.c:3132:13: warning: 'DumpAlignments' defined but not used [-Wunused-function] actutils.c: In function 'GetOldBlastAlignmentPiece': actutils.c:3128:11: warning: 'program' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF posit.c posit.c: In function 'posDemographics': posit.c:1103:17: warning: variable 'numSeqAligns' set but not used [-Wunused-but-set-variable] posit.c: In function 'posFreqsToMatrix': posit.c:1672:45: warning: operation on '*(*(posSearch->posPrivateMatrix + (unsigned int)((unsigned int)length * 4u)) + (unsigned int)((unsigned int)a * 4u))' may be undefined [-Wsequence-point] posit.c: In function 'posComputePseudoFreqs': posit.c:1833:16: warning: variable 'lambda' set but not used [-Wunused-but-set-variable] posit.c: In function 'WposComputation': posit.c:1980:13: warning: variable 'numSeqAligns' set but not used [-Wunused-but-set-variable] posit.c: In function 'posPrintInformation': posit.c:2311:8: warning: variable 'querySize' set but not used [-Wunused-but-set-variable] posit.c: In function 'posFindAlignmentDimensions': posit.c:3056:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c:3062:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c:3071:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c:3078:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c: In function 'posPreprocessAlignment': posit.c:3129:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c:3144:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c: In function 'posReadAlignment': posit.c:3245:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] posit.c: In function 'posFindAlignmentDimensions': posit.c:3079:20: warning: 'testCountSeqs' may be used uninitialized in this function [-Wuninitialized] posit.c: In function 'posComputeSequenceWeights': posit.c:1440:36: warning: 'intervalSigma' may be used uninitialized in this function [-Wuninitialized] posit.c:1417:18: warning: 'Sigma' may be used uninitialized in this function [-Wuninitialized] posit.c: In function 'posReadCheckpoint': posit.c:2865:28: warning: 'j' may be used uninitialized in this function [-Wuninitialized] posit.c:2694:11: note: 'j' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF lookup.c lookup.c: In function 'lookup_get_memory': lookup.c:555:28: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] lookup.c: In function 'MegaBlastBuildLookupTable': lookup.c:1047:35: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] lookup.c:1051:35: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] lookup.c:1078:31: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] lookup.c:1082:31: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] lookup.c:914:25: warning: variable 'extra_code' set but not used [-Wunused-but-set-variable] lookup.c:975:10: warning: 'word_weight' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF readdb.c readdb.c: In function 'readdb_parse_db_names': readdb.c:2486:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] readdb.c: In function 'FindBlastDBFileEx': readdb.c:3463:33: warning: unused variable 'envp' [-Wunused-variable] readdb.c: In function 'readdb_new_internalEx': readdb.c:3541:25: warning: unused variable 'envp' [-Wunused-variable] readdb.c: In function 'readdb_get_link': readdb.c:4735:12: warning: variable 'loaded_new' set but not used [-Wunused-but-set-variable] readdb.c:4734:24: warning: variable 'last_used' set but not used [-Wunused-but-set-variable] readdb.c: In function 'readdb_check_oid': readdb.c:4879:18: warning: comparisons like 'X<=Y<=Z' do not have their mathematical meaning [-Wparentheses] readdb.c: In function 'readdb_seqid2fasta': readdb.c:5219:22: warning: unused variable 'dummy_gi' [-Wunused-variable] readdb.c:5163:13: warning: unused variable 'chptr' [-Wunused-variable] readdb.c: In function 'FDBCleanUpInProgress': readdb.c:8100:9: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat] readdb.c: In function 'FDBLoadMembershipsTable': readdb.c:8248:21: warning: variable 'fn_name' set but not used [-Wunused-but-set-variable] readdb.c: In function 'SeqIdE2Index': readdb.c:8558:13: warning: unused variable 'tmp' [-Wunused-variable] readdb.c:8557:11: warning: unused variable 'tmptype' [-Wunused-variable] readdb.c: In function 'SeqIdSetE2Index': readdb.c:8862:14: warning: variable 'oldanp' set but not used [-Wunused-but-set-variable] readdb.c: In function 'ScanDIFile': readdb.c:11662:17: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'int' [-Wformat] readdb.c:11662:17: warning: format '%d' expects argument of type 'int', but argument 4 has type 'Nlm_CharPtr' [-Wformat] readdb.c: In function 'Fastacmd_Search_ex': readdb.c:12058:22: warning: variable 'guess_gi' set but not used [-Wunused-but-set-variable] readdb.c: In function 'DumpOneSequence': readdb.c:12395:14: warning: unused variable 'numeric_id' [-Wunused-variable] readdb.c: At top level: ../include/ncbisami.h:183:14: warning: 'PowersOfTwo' defined but not used [-Wunused-variable] ../include/ncbisami.h:191:14: warning: 'OneBit' defined but not used [-Wunused-variable] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] readdb.c:12803:1: warning: 'readdb_preload_index' defined but not used [-Wunused-function] readdb.c: In function 'readdb_get_taxonomy_names': readdb.c:5662:28: warning: 'ufp_last' may be used uninitialized in this function [-Wuninitialized] readdb.c: In function 'readdb_get_descriptor': readdb.c:6651:44: warning: 'new_defline_length' may be used uninitialized in this function [-Wuninitialized] readdb.c: In function 'GetAccList': readdb.c:11799:29: warning: 'AccListLast' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbisam.c ncbisam.c: In function 'ISAMMakeStringIndex': ncbisam.c:842:22: warning: unused variable 'file_pos' [-Wunused-variable] ncbisam.c: In function 'ISAMInitSearch': ncbisam.c:1399:10: warning: variable 'reserved2' set but not used [-Wunused-but-set-variable] ncbisam.c: In function 'ISAMMakeIndex': ncbisam.c:984:21: warning: 'KeyDataInfo' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:1019:42: warning: 'KeyInfo' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:983:14: note: 'KeyInfo' was declared here ncbisam.c: In function 'ISAMCreateDatabase': ncbisam.c:1372:12: warning: 'prevterm' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:1331:29: warning: 'field_in' may be used uninitialized in this function [-Wuninitialized] ncbisam.c: In function 'NISAMSearch': ncbisam.c:1814:32: warning: 'KeyDataPageStart' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:1812:28: warning: 'KeyPageStart' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:1750:19: warning: 'KeyPage' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:1593:24: warning: 'SampleNum' may be used uninitialized in this function [-Wuninitialized] ncbisam.c:1618:27: note: 'SampleNum' was declared here ncbisam.c: In function 'SISAMSearch': ncbisam.c:2373:8: warning: 'SampleNum' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbisort.c ncbisort.c: In function 'SORTFracCompare': ncbisort.c:692:12: warning: type defaults to 'int' in declaration of 'tmpa' [-Wimplicit-int] ncbisort.c:692:30: warning: type defaults to 'int' in declaration of 'tmpb' [-Wimplicit-int] ncbisort.c: At top level: ../include/ncbisrti.h:213:13: warning: 'inthandler' declared 'static' but never defined [-Wunused-function] ncbisort.c: In function 'SORTMergeFPS': ncbisort.c:1110:10: warning: 'savealloc' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF salign.c salign.c: In function 'BandAlignTwoSeqLocsFunc': salign.c:173:13: warning: variable 'is_prot' set but not used [-Wunused-but-set-variable] salign.c: In function 'SortBlastHits': salign.c:391:15: warning: variable 'totalvalmax' set but not used [-Wunused-but-set-variable] salign.c: In function 'link_solution': salign.c:1188:15: warning: unused variable 'first' [-Wunused-variable] salign.c: In function 'SortBlastHits': salign.c:411:6: warning: 'salpdup' may be used uninitialized in this function [-Wuninitialized] salign.c:455:22: warning: 'salptmp' may be used uninitialized in this function [-Wuninitialized] salign.c:445:28: warning: 'preselect' may be used uninitialized in this function [-Wuninitialized] salign.c: In function 'TranslateSeqLoc.constprop.6': salign.c:660:3: warning: 'slpp' may be used uninitialized in this function [-Wuninitialized] salign.c: In function 'BlastBandAlignTwoSeqLocs.isra.4': salign.c:1433:17: warning: 'tail' may be used uninitialized in this function [-Wuninitialized] salign.c:1408:15: note: 'tail' was declared here salign.c:1348:38: warning: 'stop' may be used uninitialized in this function [-Wuninitialized] salign.c:1301:30: note: 'stop' was declared here salign.c:1348:38: warning: 'start1' may be used uninitialized in this function [-Wuninitialized] salign.c:1301:22: note: 'start1' was declared here salign.c:1270:38: warning: 'stop' may be used uninitialized in this function [-Wuninitialized] salign.c:1229:30: note: 'stop' was declared here salign.c:1270:38: warning: 'start1' may be used uninitialized in this function [-Wuninitialized] salign.c:1229:22: note: 'start1' was declared here salign.c: In function 'SeqLocListToSeqAlign': salign.c:1672:23: warning: 'master_slp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF salptool.c salptool.c: In function 'MergeTwoDspBySIM4': salptool.c:285:10: warning: variable 'has_overlap' set but not used [-Wunused-but-set-variable] salptool.c:281:7: warning: variable 'gap' set but not used [-Wunused-but-set-variable] salptool.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] salptool.c:46:13: warning: 'SeqAnnotWrite' defined but not used [-Wunused-function] salptool.c:838:13: warning: 'SeqLocTrimPolyATail' defined but not used [-Wunused-function] salptool.c:1267:16: warning: 'need_recompute' defined but not used [-Wunused-function] salptool.c:1453:13: warning: 'getlengthforid' defined but not used [-Wunused-function] salptool.c:1468:13: warning: 'showtextalign_fromalign' defined but not used [-Wunused-function] salptool.c:1518:24: warning: 'OrderBestHits' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF urkutil.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF urkpcc.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF urkptpf.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF urkepi.c urkepi.c: In function 'PredictEpiI0': urkepi.c:214:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:239:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:240:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:241:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:263:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:264:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:265:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c: In function 'OptimizeEpiComp': urkepi.c:605:11: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:621:11: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:651:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:657:7: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c: In function 'OptimizeEpiHP': urkepi.c:782:13: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:797:13: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:837:11: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c: In function 'OptimizeEpiProbFunc': urkepi.c:982:13: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c:994:13: warning: array subscript has type 'char' [-Wchar-subscripts] urkepi.c: In function 'FilterEpi': urkepi.c:1053:21: warning: 'right' may be used uninitialized in this function [-Wuninitialized] urkepi.c:936:56: note: 'right' was declared here urkepi.c:1052:20: warning: 'left' may be used uninitialized in this function [-Wuninitialized] urkepi.c:936:50: note: 'left' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF urkfltr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF urkdust.c urkdust.c: In function 'DustMe_h': urkdust.c:196:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses] urkdust.c: In function 'DustForGraph': urkdust.c:776:17: warning: variable 'drphead' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF urksigu.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF seg.c seg.c: In function 'getprob': seg.c:935:15: warning: 'ans2' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF urkbias.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF urkcnsrt.c urkcnsrt.c:1203:13: warning: 'ScanFrame' defined but not used [-Wunused-function] urkcnsrt.c: In function 'Scan3Frames': urkcnsrt.c:1385:5: warning: 'length' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF urktree.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF pseed3.c pseed3.c: In function 'SeedPruneHitsFromSeedReturn': pseed3.c:230:17: warning: variable 'curSegs' set but not used [-Wunused-but-set-variable] pseed3.c: In function 'seedEngineCore': pseed3.c:507:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] pseed3.c: In function 'output_hits': pseed3.c:1202:10: warning: variable 'posBaseIndex' set but not used [-Wunused-but-set-variable] pseed3.c: In function 'init_order': pseed3.c:1483:2: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1483:2: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1487:9: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1489:2: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1490:4: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1493:6: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1494:8: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1494:8: warning: array subscript has type 'char' [-Wchar-subscripts] pseed3.c:1496:4: warning: array subscript has type 'char' [-Wchar-subscripts] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF pattern1.c pattern1.c: In function 'init_pattern': pattern1.c:286:6: warning: array subscript has type 'char' [-Wchar-subscripts] pattern1.c:303:6: warning: array subscript has type 'char' [-Wchar-subscripts] pattern1.c:317:6: warning: array subscript has type 'char' [-Wchar-subscripts] pattern1.c: In function 'find_hitsS_DNA': pattern1.c:534:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] pattern1.c:547:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] pattern1.c: At top level: pattern1.c:744:8: warning: return type defaults to 'int' [-Wreturn-type] pattern1.c: In function 'and': pattern1.c:750:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] pattern1.c: In function 'align': pattern1.c:1102:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] pattern1.c:1158:8: warning: 'CDrow' may be used uninitialized in this function [-Wuninitialized] pattern1.c:1097:15: warning: 'tempCC' may be used uninitialized in this function [-Wuninitialized] pattern1.c: In function 'get_patL': pattern1.c:1348:42: warning: 'j' may be used uninitialized in this function [-Wuninitialized] pattern1.c: In function 'get_patLL': pattern1.c:1393:5: warning: 'pos' may be used uninitialized in this function [-Wuninitialized] pattern1.c: In function 'init_pattern': pattern1.c:358:7: warning: 'tj' may be used uninitialized in this function [-Wuninitialized] pattern1.c: In function 'align_of_pattern': pattern1.c:1506:30: warning: 'data' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF impatool.c impatool.c: In function 'IMPALAPrintHelp': impatool.c:301:20: warning: 'ret_buffer' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF posit2.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF mbalign.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF vecscrn.c vecscrn.c: In function 'VSPrintOverviewFromSeqLocs': vecscrn.c:1078:9: warning: 'tmp' may be used uninitialized in this function [-Wuninitialized] vecscrn.c: In function 'VSPrintListFromSeqLocs': vecscrn.c:1188:9: warning: 'tmp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF mblast.c mblast.c: In function 'BioseqMegaBlastEngineCore': mblast.c:961:12: warning: statement with no effect [-Wunused-value] mblast.c:987:12: warning: statement with no effect [-Wunused-value] mblast.c:942:14: warning: variable 'seqalign' set but not used [-Wunused-but-set-variable] mblast.c: In function 'MegaBlastSetUpSearchInternalByLoc': mblast.c:1167:16: warning: variable 'avglen' set but not used [-Wunused-but-set-variable] mblast.c: In function 'MegaBlastPackAlignmentsByQuery': mblast.c:1829:14: warning: variable 'slp' set but not used [-Wunused-but-set-variable] mblast.c: In function 'MegaBlastWordFinder_disc_1b': mblast.c:2372:32: warning: variable 'mask' set but not used [-Wunused-but-set-variable] mblast.c: In function 'MegaBlastPackAlignmentsByQuery': mblast.c:1864:19: warning: 'sap' may be used uninitialized in this function [-Wuninitialized] mblast.c: In function 'MegaBlastGappedAlign': mblast.c:2920:35: warning: 'gap_align' may be used uninitialized in this function [-Wuninitialized] mblast.c: In function 'MegaBlastWordFinder_disc': mblast.c:2250:53: warning: 'ecode2' may be used uninitialized in this function [-Wuninitialized] mblast.c:2151:47: warning: 'ecode1' may be used uninitialized in this function [-Wuninitialized] mblast.c: In function 'MegaBlastWordFinder': mblast.c:2711:51: warning: 'ecode2' may be used uninitialized in this function [-Wuninitialized] mblast.c:2373:17: note: 'ecode2' was declared here mblast.c:2475:52: warning: 'ecode1' may be used uninitialized in this function [-Wuninitialized] mblast.c:2373:9: note: 'ecode1' was declared here mblast.c: In function 'MegaBlastGapInfoToSeqAlign': mblast.c:3504:16: warning: 'seqalign' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF rpsutil.c rpsutil.c: In function 'RPSBlastSearchLight': rpsutil.c:1838:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] rpsutil.c: In function 'RPSBgetCddHits': rpsutil.c:2210:21: warning: variable 'found_score' set but not used [-Wunused-but-set-variable] rpsutil.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] rpsutil.c: In function 'getAuxInformation': rpsutil.c:398:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:404:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:405:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:406:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:407:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:408:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:409:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:410:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:415:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c:416:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] rpsutil.c: In function 'RPSAlignTraceBack': rpsutil.c:1444:32: warning: 'posMatrix' may be used uninitialized in this function [-Wuninitialized] rpsutil.c:1433:22: warning: 'rev_subject_length' may be used uninitialized in this function [-Wuninitialized] rpsutil.c: In function 'RPSCalcEValue': rpsutil.c:1269:30: warning: 'posMatrix' may be used uninitialized in this function [-Wuninitialized] rpsutil.c: In function 'RPSBgetCddHits': rpsutil.c:2238:13: warning: 'dbname' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF kappa.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF xmlblast.c xmlblast.c: In function 'PSIXmlInit': xmlblast.c:1239:13: warning: variable 'retval' set but not used [-Wunused-but-set-variable] xmlblast.c: In function 'BXMLGetSeqLineForStdSeg': xmlblast.c:491:34: warning: 'genetic_code2' may be used uninitialized in this function [-Wuninitialized] xmlblast.c: In function 'BXMLSeqAlignToHits': xmlblast.c:867:36: warning: 'hspp' may be used uninitialized in this function [-Wuninitialized] xmlblast.c: In function 'SeqAlignToHits': xmlblast.c:1646:24: warning: 'hspp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF bxmlobj.c bxmlobj.c: In function 'BlastOutputAsnRead': bxmlobj.c:96:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] bxmlobj.c: In function 'ParametersAsnRead': bxmlobj.c:361:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] bxmlobj.c:360:12: warning: unused variable 'isError' [-Wunused-variable] bxmlobj.c: In function 'IterationAsnRead': bxmlobj.c:613:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] bxmlobj.c: In function 'StatisticsAsnRead': bxmlobj.c:829:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] bxmlobj.c:828:12: warning: unused variable 'isError' [-Wunused-variable] bxmlobj.c: In function 'HitAsnRead': bxmlobj.c:1039:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] bxmlobj.c: In function 'HspAsnRead': bxmlobj.c:1244:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] bxmlobj.c:1243:12: warning: unused variable 'isError' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF dotseq.c dotseq.c:97:3: warning: missing braces around initializer [-Wmissing-braces] dotseq.c:97:3: warning: (near initialization for 'DOTblosum62[0]') [-Wmissing-braces] dotseq.c: In function 'DOT_BuildPLookup': dotseq.c:887:31: warning: variable 'found_ambig' set but not used [-Wunused-but-set-variable] dotseq.c:885:19: warning: unused variable 'threshold' [-Wunused-variable] dotseq.c:883:19: warning: unused variable 'index' [-Wunused-variable] dotseq.c: In function 'DOT_ComputeHits': dotseq.c:1043:47: warning: variable 'q_end' set but not used [-Wunused-but-set-variable] dotseq.c:1041:19: warning: unused variable 'saved_index' [-Wunused-variable] dotseq.c:1039:19: warning: unused variable 'threshold' [-Wunused-variable] dotseq.c: In function 'DOT_SPI_FindBestAlnByDotPlot': dotseq.c:2016:20: warning: variable 'strand' set but not used [-Wunused-but-set-variable] dotseq.c:2015:20: warning: variable 'start2' set but not used [-Wunused-but-set-variable] dotseq.c:2014:20: warning: variable 'start1' set but not used [-Wunused-but-set-variable] dotseq.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] dotseq.c: In function 'DOT_BuildHitList': dotseq.c:1286:9: warning: 'index' may be used uninitialized in this function [-Wuninitialized] dotseq.c:1310:19: note: 'index' was declared here dotseq.c:1266:31: warning: 'hitlist' may be used uninitialized in this function [-Wuninitialized] dotseq.c:1309:19: note: 'hitlist' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF spidey.c spidey.c: In function 'SPI_PrintResult': spidey.c:1736:21: warning: variable 'offset' set but not used [-Wunused-but-set-variable] spidey.c: In function 'SPI_AlnSinglemRNAToPieces': spidey.c:2850:4: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses] spidey.c: In function 'SPI_FillInLastmRNAHoles': spidey.c:6295:21: warning: variable 'internal' set but not used [-Wunused-but-set-variable] spidey.c: In function 'SPI_FindBestAlnByDotPlot': spidey.c:6441:20: warning: variable 'strand' set but not used [-Wunused-but-set-variable] spidey.c:6440:20: warning: variable 'start2' set but not used [-Wunused-but-set-variable] spidey.c:6439:20: warning: variable 'start1' set but not used [-Wunused-but-set-variable] spidey.c: In function 'SPI_ConnectAlnPieces': spidey.c:7810:30: warning: variable 'tmparray' set but not used [-Wunused-but-set-variable] spidey.c:7796:25: warning: variable 'sfpprev' set but not used [-Wunused-but-set-variable] spidey.c: In function 'SPI_AdjustSplicesInPieces': spidey.c:8444:23: warning: variable 'minus' set but not used [-Wunused-but-set-variable] spidey.c: In function 'SPI_CheckMrnaOrder': spidey.c:10293:22: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses] spidey.c:10297:25: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses] spidey.c:10310:22: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses] spidey.c:10312:25: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses] spidey.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF motif.c motif.c: In function 'MOT_FindPolyA': motif.c:86:18: warning: variable 'buf' set but not used [-Wunused-but-set-variable] motif.c: In function 'MOT_FindKozak': motif.c:216:18: warning: variable 'buf' set but not used [-Wunused-but-set-variable] motif.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blfmtutl.c blfmtutl.c: In function 'BlastPrintTabularResults': blfmtutl.c:1110:13: warning: 'alignments_count' may be used uninitialized in this function [-Wuninitialized] blfmtutl.c:1328:19: warning: 's_end' may be used uninitialized in this function [-Wuninitialized] blfmtutl.c:1327:21: warning: 's_start' may be used uninitialized in this function [-Wuninitialized] blfmtutl.c:1326:19: warning: 'q_end' may be used uninitialized in this function [-Wuninitialized] blfmtutl.c:1325:21: warning: 'q_start' may be used uninitialized in this function [-Wuninitialized] blfmtutl.c:1069:20: warning: 'query_id' may be used uninitialized in this function [-Wuninitialized] blfmtutl.c: In function 'BlastSetUserErrorString': blfmtutl.c:1389:26: warning: 'title' may be used uninitialized in this function [-Wuninitialized] rm -f libncbitool.a ar cru libncbitool.a csim.o db_slist.o dust.o blast_dust.o falign.o g_any.o sim2.o sim3.o sim4.o simutil.o slist.o sec.o tfuns.o toasn3.o toporg.o pobutil.o stsutil.o suggadj.o suggest.o suggslp.o blast.o blastutl.o blastool.o blastconcat.o splutil.o gapxdrop.o bandalg0.o bandalg1.o bandalg2.o bandalg3.o bandalg4.o bandalg5.o bandalgn.o blastkar.o actutils.o posit.o lookup.o readdb.o ncbisam.o ncbisort.o salign.o salptool.o urkutil.o urkpcc.o urkptpf.o urkepi.o urkfltr.o urkdust.o urksigu.o seg.o urkbias.o urkcnsrt.o urktree.o pseed3.o pattern1.o impatool.o posit2.o mbalign.o vecscrn.o mblast.o rpsutil.o kappa.o xmlblast.o bxmlobj.o dotseq.o spidey.o motif.o blfmtutl.o cp -p libncbitool.a ../lib ranlib ../lib/libncbitool.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF matrix_frequency_data.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF compo_mode_condition.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF composition_adjustment.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF nlm_linear_algebra.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF optimize_target_freq.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF compo_heap.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF smith_waterman.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF redo_alignment.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF unified_pvalues.c rm -f libblastcompadj.a ar cru libblastcompadj.a matrix_frequency_data.o compo_mode_condition.o composition_adjustment.o nlm_linear_algebra.o optimize_target_freq.o compo_heap.o smith_waterman.o redo_alignment.o unified_pvalues.o cp -p libblastcompadj.a ../lib ranlib ../lib/libblastcompadj.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF gdfontg.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF gdfontmb.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF gdfontt.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF pictogif.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF gdfontl.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF gdfonts.c gcc -DWIN_GIF -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbidrwg.c ncbidrwg.c: In function 'Nlm_SetFontData': ncbidrwg.c:489:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_GetFontData': ncbidrwg.c:501:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_FindFont': ncbidrwg.c:2234:7: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_ReuseFont': ncbidrwg.c:2252:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_GetFontSpec': ncbidrwg.c:2860:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c:2867:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_AssignPrinterFont': ncbidrwg.c:2928:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_GIFRgnToRect': ncbidrwg.c:4098:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_RectToGIFRgn': ncbidrwg.c:4109:5: warning: statement with no effect [-Wunused-value] ncbidrwg.c: In function 'Nlm_ClearRgn': ncbidrwg.c:6081:16: warning: variable 'ntool' set but not used [-Wunused-but-set-variable] ncbidrwg.c: In function 'Nlm_DiffRgn': ncbidrwg.c:6273:16: warning: variable 'ntool3' set but not used [-Wunused-but-set-variable] ncbidrwg.c:6272:16: warning: variable 'ntool2' set but not used [-Wunused-but-set-variable] ncbidrwg.c:6271:16: warning: variable 'ntool1' set but not used [-Wunused-but-set-variable] ncbidrwg.c: In function 'Nlm_XorRgn': ncbidrwg.c:6324:16: warning: variable 'ntool3' set but not used [-Wunused-but-set-variable] ncbidrwg.c:6323:16: warning: variable 'ntool2' set but not used [-Wunused-but-set-variable] ncbidrwg.c:6322:16: warning: variable 'ntool1' set but not used [-Wunused-but-set-variable] ncbidrwg.c: In function 'Nlm_EqualRgn': ncbidrwg.c:6353:16: warning: variable 'ntool2' set but not used [-Wunused-but-set-variable] ncbidrwg.c:6352:16: warning: variable 'ntool1' set but not used [-Wunused-but-set-variable] ncbidrwg.c: In function 'Nlm_EmptyRgn': ncbidrwg.c:6381:17: warning: variable 'ntool' set but not used [-Wunused-but-set-variable] ncbidrwg.c: In function 'Nlm_CopyPixmap': ncbidrwg.c:7040:25: warning: variable 'height' set but not used [-Wunused-but-set-variable] ncbidrwg.c:7039:25: warning: variable 'width' set but not used [-Wunused-but-set-variable] ncbidrwg.c: In function 'Nlm_GetColorRGB': ncbidrwg.c:1373:3: warning: 'i' may be used uninitialized in this function [-Wuninitialized] rm -f libvibgif.a ar cru libvibgif.a gdfontg.o gdfontmb.o gdfontt.o pictogif.o gdfontl.o gdfonts.o ncbidrwg.o drawing.o mapping.o picture.o ncbimain.o cp -p libvibgif.a ../lib ranlib ../lib/libvibgif.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF algorend.c algorend.c: In function 'ColorFromSS': algorend.c:893:10: warning: unused variable 'rsult' [-Wunused-variable] algorend.c: In function 'Cn3D_RenWire': algorend.c:1400:10: warning: unused variable 'pmldThis' [-Wunused-variable] algorend.c:1399:11: warning: unused variable 'pdnmlThis' [-Wunused-variable] algorend.c:1398:10: warning: unused variable 'pmsdThis' [-Wunused-variable] algorend.c: In function 'Cn3D_ColSeqCons': algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] algorend.c: In function 'RenderObject': algorend.c:3135:25: warning: variable 'fZTo' set but not used [-Wunused-but-set-variable] algorend.c:3135:19: warning: variable 'fYTo' set but not used [-Wunused-but-set-variable] algorend.c:3135:13: warning: variable 'fXTo' set but not used [-Wunused-but-set-variable] algorend.c:3134:29: warning: variable 'fZFrom' set but not used [-Wunused-but-set-variable] algorend.c:3134:21: warning: variable 'fYFrom' set but not used [-Wunused-but-set-variable] algorend.c:3134:13: warning: variable 'fXFrom' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderLabel': algorend.c:3393:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderBond': algorend.c:3554:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderHalfWormBond': algorend.c:3673:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable] algorend.c:3671:24: warning: variable 'pmad2' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderAnAtom': algorend.c:3758:10: warning: unused variable 'pmadFrom' [-Wunused-variable] algorend.c:3757:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderAllAtom': algorend.c:3829:9: warning: variable 'iMenu' set but not used [-Wunused-but-set-variable] algorend.c:3815:11: warning: unused variable 'pvnmbThis' [-Wunused-variable] algorend.c:3811:11: warning: unused variable 'pvnmaThis' [-Wunused-variable] algorend.c: In function 'RenderGraph': algorend.c:4498:10: warning: unused variable 'bReservedThis' [-Wunused-variable] algorend.c: In function 'LabelChainTermini': algorend.c:4772:14: warning: unused variable 'pmbdThis' [-Wunused-variable] algorend.c:4771:15: warning: unused variable 'pvnmbThis' [-Wunused-variable] algorend.c: In function 'RenderMolecule': algorend.c:4871:11: warning: variable 'pdnmmThis' set but not used [-Wunused-but-set-variable] algorend.c: In function 'fnARLoop': algorend.c:5556:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] algorend.c: In function 'AlgorithmicRendering': algorend.c:5684:10: warning: unused variable 'i' [-Wunused-variable] algorend.c:5683:10: warning: unused variable 'Cn3d_LayerNow_sofar' [-Wunused-variable] algorend.c: In function 'Do3DOrigin': algorend.c:5756:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] algorend.c:5751:13: warning: variable 'fTo' set but not used [-Wunused-but-set-variable] algorend.c:5750:13: warning: variable 'fFrom' set but not used [-Wunused-but-set-variable] algorend.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] algorend.c:717:16: warning: 'Cn3d_CopyToNode' defined but not used [-Wunused-variable] algorend.c:2265:13: warning: 'LabelGroupOnOffProc' defined but not used [-Wunused-function] algorend.c: In function 'RenderLabel': algorend.c:3493:14: warning: 'iX' may be used uninitialized in this function [-Wuninitialized] algorend.c:3493:14: warning: 'iY' may be used uninitialized in this function [-Wuninitialized] algorend.c:3493:14: warning: 'iZ' may be used uninitialized in this function [-Wuninitialized] algorend.c:3448:15: warning: 'fZCen' may be used uninitialized in this function [-Wuninitialized] algorend.c:3447:15: warning: 'fYCen' may be used uninitialized in this function [-Wuninitialized] algorend.c:3446:15: warning: 'fXCen' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:41: warning: 'fZTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:77: warning: 'fYTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3450:41: warning: 'fXTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:58: warning: 'fZFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:22: warning: 'fYFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3450:58: warning: 'fXFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c: In function 'MasterChangeRenderProc.isra.9': algorend.c:1316:33: warning: 'k' may be used uninitialized in this function [-Wuninitialized] algorend.c: In function 'RenderObject': algorend.c:3260:22: warning: 'iXFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3260:22: warning: 'iYFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3260:22: warning: 'iZFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3260:22: warning: 'iXTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3260:22: warning: 'iYTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3260:22: warning: 'iZTo' may be used uninitialized in this function [-Wuninitialized] algorend.c: In function 'Do3DOrigin': algorend.c:5792:18: warning: 'iXFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:5792:18: warning: 'iYFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:5792:18: warning: 'iZFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:5792:18: warning: 'iXTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:5792:18: warning: 'iYTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:5792:18: warning: 'iZTo' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF cn3dmsel.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF cn3dopen.c cn3dopen.c: In function 'Cn3D_OpenStart': cn3dopen.c:722:10: warning: unused variable 'iBioseq' [-Wunused-variable] cn3dopen.c: In function 'MMDB_ReadMime': cn3dopen.c:1000:19: warning: unused variable 'pdnmlThis' [-Wunused-variable] cn3dopen.c:989:25: warning: unused variable 'pbsasThis' [-Wunused-variable] cn3dopen.c: In function 'Cn3D_NetOpenBiostruc': cn3dopen.c:1310:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dopen.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dopen.c:430:15: warning: 'Cn3D_wOpen' defined but not used [-Wunused-variable] cn3dopen.c:431:15: warning: 'Cn3D_bOpenBrowse' defined but not used [-Wunused-variable] cn3dopen.c: In function 'MMDB_ReadMime': cn3dopen.c:528:28: warning: 'salp' may be used uninitialized in this function [-Wuninitialized] cn3dopen.c:513:15: note: 'salp' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF cn3dsave.c cn3dsave.c: In function 'Cn3D_ExportAsnNow': cn3dsave.c:375:11: warning: unused variable 'pdnmlThis' [-Wunused-variable] cn3dsave.c:372:24: warning: variable 'pbsfThis' set but not used [-Wunused-but-set-variable] cn3dsave.c:366:10: warning: unused variable 'pmsdSlave' [-Wunused-variable] cn3dsave.c:362:27: warning: variable 'FirstSlave' set but not used [-Wunused-but-set-variable] cn3dsave.c:357:13: warning: unused variable 'pcSave' [-Wunused-variable] cn3dsave.c: In function 'Cn3D_SaveBiostruc': cn3dsave.c:524:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dsave.c:523:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable] cn3dsave.c:518:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dsave.c: In function 'Cn3D_ExportDictNow': cn3dsave.c:598:13: warning: unused variable 'pcSave' [-Wunused-variable] cn3dsave.c:596:10: warning: unused variable 'iCount' [-Wunused-variable] cn3dsave.c: In function 'Cn3D_SaveDictionary': cn3dsave.c:629:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dsave.c:624:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dsave.c: In function 'Cn3D_SaveSub': cn3dsave.c:688:10: warning: variable 'i' set but not used [-Wunused-but-set-variable] cn3dsave.c: At top level: ../include/asnmime.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnmime.h:117:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnmime.h:118:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnmime.h:119:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dsave.c:184:15: warning: 'Cn3D_bFeatOn' defined but not used [-Wunused-variable] cn3dsave.c: In function 'Cn3D_GetSubSet.isra.4': cn3dsave.c:296:20: warning: 'isep' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF cn3dxprt.c cn3dxprt.c: In function 'Cn3D_ExportPDB': cn3dxprt.c:209:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dxprt.c:208:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable] cn3dxprt.c:203:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dxprt.c: In function 'Cn3D_ExportKin': cn3dxprt.c:381:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dxprt.c:380:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable] cn3dxprt.c:375:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dxprt.c: In function 'Cn3D_ExportSub': cn3dxprt.c:513:10: warning: variable 'i' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF cn3dwin.c cn3dwin.c:734:3: warning: missing braces around initializer [-Wmissing-braces] cn3dwin.c:734:3: warning: (near initialization for 'Cn3d_PaletteRGB[0]') [-Wmissing-braces] cn3dwin.c: In function 'Viewer3DGroups': cn3dwin.c:1728:10: warning: unused variable 'groups' [-Wunused-variable] cn3dwin.c: In function 'Viewer3DViewer': cn3dwin.c:1784:10: warning: unused variable 'groups' [-Wunused-variable] cn3dwin.c: In function 'Cn3D_AlignEdit': cn3dwin.c:1936:10: warning: unused variable 'iCount' [-Wunused-variable] cn3dwin.c:1935:10: warning: variable 'pmmdThis' set but not used [-Wunused-but-set-variable] cn3dwin.c:1933:17: warning: unused variable 'salp' [-Wunused-variable] cn3dwin.c:1931:29: warning: variable 'pmsdSlave' set but not used [-Wunused-but-set-variable] cn3dwin.c:1930:11: warning: unused variable 'pdnmsSlave' [-Wunused-variable] cn3dwin.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dwin.c:682:13: warning: 'Cn3D_iLabelCtrl' defined but not used [-Wunused-variable] cn3dwin.c:688:13: warning: 'Cn3D_iModelCtrl' defined but not used [-Wunused-variable] cn3dwin.c:922:13: warning: 'Cn3D_ZoomCB' defined but not used [-Wunused-function] cn3dwin.c:929:13: warning: 'Cn3D_MoveCB' defined but not used [-Wunused-function] cn3dwin.c:1428:13: warning: 'HLatom_MA' defined but not used [-Wunused-function] cn3dwin.c:1626:13: warning: 'HLmolecule_MA' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF cn3dentr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF cn3dmsg.c cn3dmsg.c: In function 'SeqStrucMediaMsgFunc': cn3dmsg.c:593:19: warning: variable 'omudp' set but not used [-Wunused-but-set-variable] cn3dmsg.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF cn3dmatn.c cn3dmatn.c: In function 'FindMM': cn3dmatn.c:217:29: warning: unused variable 'pdnmsThisSlave' [-Wunused-variable] cn3dmatn.c: In function 'DoMediaHL': cn3dmatn.c:249:10: warning: variable 'MainAtom' set but not used [-Wunused-but-set-variable] cn3dmatn.c:247:10: warning: unused variable 'paldThis' [-Wunused-variable] cn3dmatn.c:246:11: warning: unused variable 'pvnalThis' [-Wunused-variable] cn3dmatn.c:245:10: warning: unused variable 'pmadThis' [-Wunused-variable] cn3dmatn.c:244:11: warning: unused variable 'pvnmaThis' [-Wunused-variable] cn3dmatn.c: In function 'Cn3DCheckAndDoHighlight': cn3dmatn.c:372:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dmatn.c:371:10: warning: unused variable 'pmmdThis' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF cn3dmodl.c cn3dmodl.c: In function 'Cn3DCheckNoSingleHighlight': cn3dmodl.c:353:11: warning: unused variable 'pdnmgThis' [-Wunused-variable] cn3dmodl.c: In function 'Cn3DCheckHighlighted': cn3dmodl.c:364:29: warning: unused variable 'pmsdSlave' [-Wunused-variable] cn3dmodl.c: In function 'Cn3D_ReSetVisibleStatus': cn3dmodl.c:508:10: warning: unused variable 'pmgd' [-Wunused-variable] cn3dmodl.c:507:11: warning: unused variable 'pdnmg' [-Wunused-variable] cn3dmodl.c:506:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dmodl.c: In function 'fnAlignList': cn3dmodl.c:996:25: warning: unused variable 'itemtype' [-Wunused-variable] cn3dmodl.c:996:11: warning: unused variable 'entityID' [-Wunused-variable] cn3dmodl.c:995:14: warning: unused variable 'sipThis' [-Wunused-variable] cn3dmodl.c:993:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dmodl.c: In function 'SynchronizeModVisibleStatus': cn3dmodl.c:1065:11: warning: unused variable 'pdnmg' [-Wunused-variable] cn3dmodl.c:1064:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dmodl.c: In function 'SetResidueVisibilities': cn3dmodl.c:1201:11: warning: unused variable 'pvnmoThis' [-Wunused-variable] cn3dmodl.c: At top level: ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF cn3dshim.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF cn3dmesh.c cn3dmesh.c: In function 'Cn3D_MeshAcceptProc': cn3dmesh.c:103:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dmesh.c: In function 'Cn3D_OpenMesh': cn3dmesh.c:151:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dmesh.c: In function 'Cn3D_MeshAcceptProc': cn3dmesh.c:111:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cn3dmesh.c:119:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cn3dmesh.c:129:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cn3dmesh.c:133:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF cn3dstyl.c cn3dstyl.c: In function 'GetThisSpecialAlgorRenderSet': cn3dstyl.c:459:27: warning: unused variable 'sfipThis' [-Wunused-variable] cn3dstyl.c: In function 'GetSpecialAlgorRenderSet': cn3dstyl.c:641:10: warning: unused variable 'parsThis' [-Wunused-variable] cn3dstyl.c:640:23: warning: unused variable 'sfpThis' [-Wunused-variable] cn3dstyl.c: In function 'ChangeSpecialLabelsProc': cn3dstyl.c:866:44: warning: unused variable 'PDBOn' [-Wunused-variable] cn3dstyl.c: In function 'lFeatureEditedAction': cn3dstyl.c:1136:10: warning: unused variable 'val' [-Wunused-variable] cn3dstyl.c: In function 'bFeatureMoveAction': cn3dstyl.c:1153:23: warning: unused variable 'sfpThis' [-Wunused-variable] cn3dstyl.c: In function 'bFeatureEditAction': cn3dstyl.c:1176:23: warning: unused variable 'sfpThis' [-Wunused-variable] cn3dstyl.c: In function 'ModelControls': cn3dstyl.c:1364:19: warning: variable 'ppt13' set but not used [-Wunused-but-set-variable] cn3dstyl.c:1362:36: warning: variable 'ppt5' set but not used [-Wunused-but-set-variable] cn3dstyl.c:1362:12: warning: variable 'ppt1' set but not used [-Wunused-but-set-variable] cn3dstyl.c: In function 'GetBiostrucFeatureLocationForHihglightedResidues': cn3dstyl.c:1728:30: warning: variable 'SingleInterval' set but not used [-Wunused-but-set-variable] cn3dstyl.c:1725:20: warning: variable 'iMolCurrent' set but not used [-Wunused-but-set-variable] cn3dstyl.c: In function 'MakeBiostrucFeatureSetForUserDefinedFeature': cn3dstyl.c:2122:60: warning: unused variable 'bsfsp_tail' [-Wunused-variable] cn3dstyl.c:2122:41: warning: unused variable 'bsfsp_head' [-Wunused-variable] cn3dstyl.c: In function 'GetUserDefinedFeature': cn3dstyl.c:2196:27: warning: unused variable 'sfipThis' [-Wunused-variable] cn3dstyl.c: In function 'Cn3DIndexUserDefinedFeature': cn3dstyl.c:2551:23: warning: variable 'sfpThis' set but not used [-Wunused-but-set-variable] cn3dstyl.c:2549:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dstyl.c:2548:11: warning: unused variable 'pdnmmHead' [-Wunused-variable] cn3dstyl.c:2547:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dstyl.c: At top level: ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dstyl.c:144:14: warning: 'Cn3D_pupModelStyleItem' defined but not used [-Wunused-variable] cn3dstyl.c:149:15: warning: 'bResetFeatureTitle' defined but not used [-Wunused-variable] cn3dstyl.c:456:30: warning: 'GetThisSpecialAlgorRenderSet' defined but not used [-Wunused-function] cn3dstyl.c: In function 'CopyLocation': cn3dstyl.c:496:27: warning: 'rsipNewHead' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF seqcons.c ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] seqcons.c: In function 'CSC_Algorithm_ByBlosum62': seqcons.c:402:43: warning: 'minScore' may be used uninitialized in this function [-Wuninitialized] seqcons.c:402:67: warning: 'maxScore' may be used uninitialized in this function [-Wuninitialized] rm -f libncbicn3d.a ar cru libncbicn3d.a algorend.o cn3dmsel.o cn3dopen.o cn3dsave.o cn3dxprt.o cn3dwin.o cn3dentr.o cn3dmsg.o cn3dmatn.o cn3dmodl.o cn3dshim.o cn3dmesh.o cn3dstyl.o seqcons.o cp -p libncbicn3d.a ../lib ranlib ../lib/libncbicn3d.a mv algorend.o algorend.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL algorend.c algorend.c: In function 'Cn3D_SetOGLFont': algorend.c:791:24: warning: unused variable 'currentUnderlined' [-Wunused-variable] algorend.c:790:45: warning: unused variable 'currentItalic' [-Wunused-variable] algorend.c:790:24: warning: unused variable 'currentBold' [-Wunused-variable] algorend.c:789:40: warning: unused variable 'currentSize' [-Wunused-variable] algorend.c:789:21: warning: unused variable 'currentIndex' [-Wunused-variable] algorend.c: In function 'ColorFromSS': algorend.c:893:10: warning: unused variable 'rsult' [-Wunused-variable] algorend.c: In function 'Cn3D_RenWire': algorend.c:1400:10: warning: unused variable 'pmldThis' [-Wunused-variable] algorend.c:1399:11: warning: unused variable 'pdnmlThis' [-Wunused-variable] algorend.c:1398:10: warning: unused variable 'pmsdThis' [-Wunused-variable] algorend.c: In function 'Cn3D_ColSeqCons': algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] algorend.c: In function 'MasterChangeLabelsProc': algorend.c:2075:44: warning: unused variable 'TopOn' [-Wunused-variable] algorend.c:2073:13: warning: unused variable 'k' [-Wunused-variable] algorend.c: In function 'ResetLabelCtrls': algorend.c:2272:25: warning: variable 'size' set but not used [-Wunused-but-set-variable] algorend.c: In function 'LabelControls': algorend.c:2434:19: warning: variable 'ppt11' set but not used [-Wunused-but-set-variable] algorend.c:2431:36: warning: unused variable 'ppt7' [-Wunused-variable] algorend.c: In function 'Cn3D_SetQualityFromAppParams': algorend.c:2649:9: warning: unused variable 'i' [-Wunused-variable] algorend.c: In function 'OGL_Quality': algorend.c:2769:23: warning: unused variable 'q' [-Wunused-variable] algorend.c:2769:20: warning: variable 'p' set but not used [-Wunused-but-set-variable] algorend.c:2769:16: warning: variable 'bp' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderControls': algorend.c:2893:12: warning: variable 'ppt5' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderObject': algorend.c:3138:10: warning: unused variable 'iCylRadius' [-Wunused-variable] algorend.c:3137:22: warning: unused variable 'iZTo' [-Wunused-variable] algorend.c:3137:16: warning: unused variable 'iYTo' [-Wunused-variable] algorend.c:3137:10: warning: unused variable 'iXTo' [-Wunused-variable] algorend.c:3136:26: warning: unused variable 'iZFrom' [-Wunused-variable] algorend.c:3136:18: warning: unused variable 'iYFrom' [-Wunused-variable] algorend.c:3136:10: warning: unused variable 'iXFrom' [-Wunused-variable] algorend.c:3133:10: warning: unused variable 'i' [-Wunused-variable] algorend.c: In function 'RenderLabel': algorend.c:3394:10: warning: variable 'paldPrim' set but not used [-Wunused-but-set-variable] algorend.c:3393:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] algorend.c:3389:18: warning: unused variable 'iZ' [-Wunused-variable] algorend.c:3389:14: warning: unused variable 'iY' [-Wunused-variable] algorend.c:3389:10: warning: unused variable 'iX' [-Wunused-variable] algorend.c: In function 'RenderBond': algorend.c:3554:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderHalfWormBond': algorend.c:3673:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable] algorend.c:3671:24: warning: variable 'pmad2' set but not used [-Wunused-but-set-variable] algorend.c: In function 'RenderAnAtom': algorend.c:3758:10: warning: unused variable 'pmadFrom' [-Wunused-variable] algorend.c: In function 'RenderAllAtom': algorend.c:3829:9: warning: variable 'iMenu' set but not used [-Wunused-but-set-variable] algorend.c:3815:11: warning: unused variable 'pvnmbThis' [-Wunused-variable] algorend.c:3811:11: warning: unused variable 'pvnmaThis' [-Wunused-variable] algorend.c: In function 'RenderGraph': algorend.c:4498:10: warning: unused variable 'bReservedThis' [-Wunused-variable] algorend.c: In function 'LabelChainTermini': algorend.c:4772:14: warning: unused variable 'pmbdThis' [-Wunused-variable] algorend.c:4771:15: warning: unused variable 'pvnmbThis' [-Wunused-variable] algorend.c: In function 'RenderMolecule': algorend.c:4871:11: warning: variable 'pdnmmThis' set but not used [-Wunused-but-set-variable] algorend.c: In function 'fnARLoop': algorend.c:5556:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable] algorend.c: In function 'AlgorithmicRendering': algorend.c:5684:10: warning: unused variable 'i' [-Wunused-variable] algorend.c:5683:10: warning: unused variable 'Cn3d_LayerNow_sofar' [-Wunused-variable] algorend.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] algorend.c:717:16: warning: 'Cn3d_CopyToNode' defined but not used [-Wunused-variable] algorend.c:2265:13: warning: 'LabelGroupOnOffProc' defined but not used [-Wunused-function] algorend.c: In function 'RenderLabel': algorend.c:3448:15: warning: 'fZCen' may be used uninitialized in this function [-Wuninitialized] algorend.c:3447:15: warning: 'fYCen' may be used uninitialized in this function [-Wuninitialized] algorend.c:3446:15: warning: 'fXCen' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:41: warning: 'fZTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:77: warning: 'fYTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3450:41: warning: 'fXTo' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:58: warning: 'fZFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3449:22: warning: 'fYFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c:3450:58: warning: 'fXFrom' may be used uninitialized in this function [-Wuninitialized] algorend.c: In function 'MasterChangeRenderProc': algorend.c:1316:33: warning: 'k' may be used uninitialized in this function [-Wuninitialized] mv algorend.o algorend.glo mv algorend.tmp algorend.o mv cn3dmsel.o cn3dmsel.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsel.c mv cn3dmsel.o cn3dmsel.glo mv cn3dmsel.tmp cn3dmsel.o mv cn3dopen.o cn3dopen.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dopen.c cn3dopen.c: In function 'Cn3D_OpenStart': cn3dopen.c:722:10: warning: unused variable 'iBioseq' [-Wunused-variable] cn3dopen.c: In function 'MMDB_ReadMime': cn3dopen.c:1000:19: warning: unused variable 'pdnmlThis' [-Wunused-variable] cn3dopen.c:989:25: warning: unused variable 'pbsasThis' [-Wunused-variable] cn3dopen.c: In function 'Cn3D_NetOpenBiostruc': cn3dopen.c:1310:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dopen.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dopen.c:430:15: warning: 'Cn3D_wOpen' defined but not used [-Wunused-variable] cn3dopen.c:431:15: warning: 'Cn3D_bOpenBrowse' defined but not used [-Wunused-variable] cn3dopen.c: In function 'MMDB_ReadMime': cn3dopen.c:528:28: warning: 'salp' may be used uninitialized in this function [-Wuninitialized] cn3dopen.c:513:15: note: 'salp' was declared here mv cn3dopen.o cn3dopen.glo mv cn3dopen.tmp cn3dopen.o mv cn3dsave.o cn3dsave.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dsave.c cn3dsave.c: In function 'Cn3D_AddMatrix': cn3dsave.c:206:41: warning: unused variable 'bsfsp_new' [-Wunused-variable] cn3dsave.c: In function 'Cn3D_ExportAsnNow': cn3dsave.c:375:11: warning: unused variable 'pdnmlThis' [-Wunused-variable] cn3dsave.c:372:24: warning: variable 'pbsfThis' set but not used [-Wunused-but-set-variable] cn3dsave.c:366:10: warning: unused variable 'pmsdSlave' [-Wunused-variable] cn3dsave.c:362:27: warning: variable 'FirstSlave' set but not used [-Wunused-but-set-variable] cn3dsave.c:357:13: warning: unused variable 'pcSave' [-Wunused-variable] cn3dsave.c: In function 'Cn3D_SaveBiostruc': cn3dsave.c:524:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dsave.c:523:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable] cn3dsave.c:518:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dsave.c: In function 'Cn3D_ExportDictNow': cn3dsave.c:598:13: warning: unused variable 'pcSave' [-Wunused-variable] cn3dsave.c:596:10: warning: unused variable 'iCount' [-Wunused-variable] cn3dsave.c: In function 'Cn3D_SaveDictionary': cn3dsave.c:629:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dsave.c:624:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dsave.c: In function 'Cn3D_SaveSub': cn3dsave.c:688:10: warning: variable 'i' set but not used [-Wunused-but-set-variable] cn3dsave.c: At top level: ../include/asnmime.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnmime.h:117:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnmime.h:118:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnmime.h:119:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dsave.c:184:15: warning: 'Cn3D_bFeatOn' defined but not used [-Wunused-variable] cn3dsave.c: In function 'Cn3D_GetSubSet.isra.4': cn3dsave.c:296:20: warning: 'isep' may be used uninitialized in this function [-Wuninitialized] mv cn3dsave.o cn3dsave.glo mv cn3dsave.tmp cn3dsave.o mv cn3dxprt.o cn3dxprt.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dxprt.c cn3dxprt.c: In function 'Cn3D_ExportPDB': cn3dxprt.c:209:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dxprt.c:208:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable] cn3dxprt.c:203:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dxprt.c: In function 'Cn3D_ExportKin': cn3dxprt.c:381:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dxprt.c:380:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable] cn3dxprt.c:375:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable] cn3dxprt.c: In function 'Cn3D_ExportSub': cn3dxprt.c:513:10: warning: variable 'i' set but not used [-Wunused-but-set-variable] mv cn3dxprt.o cn3dxprt.glo mv cn3dxprt.tmp cn3dxprt.o mv cn3dwin.o cn3dwin.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dwin.c cn3dwin.c:734:3: warning: missing braces around initializer [-Wmissing-braces] cn3dwin.c:734:3: warning: (near initialization for 'Cn3d_PaletteRGB[0]') [-Wmissing-braces] cn3dwin.c: In function 'Cn3D_Default_HLColor': cn3dwin.c:982:27: warning: variable 'colorB' set but not used [-Wunused-but-set-variable] cn3dwin.c:982:19: warning: variable 'colorG' set but not used [-Wunused-but-set-variable] cn3dwin.c:982:11: warning: variable 'colorR' set but not used [-Wunused-but-set-variable] cn3dwin.c: In function 'Cn3D_RedrawEx': cn3dwin.c:1251:19: warning: unused variable 'iColor' [-Wunused-variable] cn3dwin.c: In function 'fnPreCHLresidue': cn3dwin.c:1543:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dwin.c: In function 'Viewer3DGroups': cn3dwin.c:1728:10: warning: unused variable 'groups' [-Wunused-variable] cn3dwin.c: In function 'Cn3D_AlignEdit': cn3dwin.c:1936:10: warning: unused variable 'iCount' [-Wunused-variable] cn3dwin.c:1935:10: warning: variable 'pmmdThis' set but not used [-Wunused-but-set-variable] cn3dwin.c:1933:17: warning: unused variable 'salp' [-Wunused-variable] cn3dwin.c:1931:29: warning: variable 'pmsdSlave' set but not used [-Wunused-but-set-variable] cn3dwin.c:1930:11: warning: unused variable 'pdnmsSlave' [-Wunused-variable] cn3dwin.c: In function 'Cn3DWin': cn3dwin.c:2364:5: warning: implicit declaration of function 'Nlm_SetOGLContext' [-Wimplicit-function-declaration] cn3dwin.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dwin.c:676:14: warning: 'Cn3D_Vy' defined but not used [-Wunused-variable] cn3dwin.c:682:13: warning: 'Cn3D_iLabelCtrl' defined but not used [-Wunused-variable] cn3dwin.c:688:13: warning: 'Cn3D_iModelCtrl' defined but not used [-Wunused-variable] cn3dwin.c:713:14: warning: 'Cn3D_gViewer' defined but not used [-Wunused-variable] cn3dwin.c:719:14: warning: 'Cn3D_gViewCtrl' defined but not used [-Wunused-variable] cn3dwin.c:922:13: warning: 'Cn3D_ZoomCB' defined but not used [-Wunused-function] cn3dwin.c:929:13: warning: 'Cn3D_MoveCB' defined but not used [-Wunused-function] cn3dwin.c:936:13: warning: 'Cn3D_Default_BgColor' defined but not used [-Wunused-function] cn3dwin.c:953:13: warning: 'Cn3D_BgColor' defined but not used [-Wunused-function] cn3dwin.c:979:13: warning: 'Cn3D_Default_HLColor' defined but not used [-Wunused-function] cn3dwin.c:1349:25: warning: 'DoHighlightSeg' defined but not used [-Wunused-function] cn3dwin.c:1428:13: warning: 'HLatom_MA' defined but not used [-Wunused-function] cn3dwin.c:1626:13: warning: 'HLmolecule_MA' defined but not used [-Wunused-function] mv cn3dwin.o cn3dwin.glo mv cn3dwin.tmp cn3dwin.o mv cn3dentr.o cn3dentr.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dentr.c mv cn3dentr.o cn3dentr.glo mv cn3dentr.tmp cn3dentr.o mv cn3dmsg.o cn3dmsg.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsg.c cn3dmsg.c: In function 'SeqStrucMediaMsgFunc': cn3dmsg.c:593:19: warning: variable 'omudp' set but not used [-Wunused-but-set-variable] cn3dmsg.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] mv cn3dmsg.o cn3dmsg.glo mv cn3dmsg.tmp cn3dmsg.o mv cn3dmatn.o cn3dmatn.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmatn.c cn3dmatn.c: In function 'FindMM': cn3dmatn.c:217:29: warning: unused variable 'pdnmsThisSlave' [-Wunused-variable] cn3dmatn.c: In function 'DoMediaHL': cn3dmatn.c:249:10: warning: variable 'MainAtom' set but not used [-Wunused-but-set-variable] cn3dmatn.c:247:10: warning: unused variable 'paldThis' [-Wunused-variable] cn3dmatn.c:246:11: warning: unused variable 'pvnalThis' [-Wunused-variable] cn3dmatn.c:245:10: warning: unused variable 'pmadThis' [-Wunused-variable] cn3dmatn.c:244:11: warning: unused variable 'pvnmaThis' [-Wunused-variable] cn3dmatn.c: In function 'Cn3DCheckAndDoHighlight': cn3dmatn.c:372:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dmatn.c:371:10: warning: unused variable 'pmmdThis' [-Wunused-variable] mv cn3dmatn.o cn3dmatn.glo mv cn3dmatn.tmp cn3dmatn.o mv cn3dmodl.o cn3dmodl.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmodl.c cn3dmodl.c: In function 'Cn3DCheckNoSingleHighlight': cn3dmodl.c:353:11: warning: unused variable 'pdnmgThis' [-Wunused-variable] cn3dmodl.c: In function 'Cn3DCheckHighlighted': cn3dmodl.c:364:29: warning: unused variable 'pmsdSlave' [-Wunused-variable] cn3dmodl.c: In function 'Cn3D_ReSetVisibleStatus': cn3dmodl.c:508:10: warning: unused variable 'pmgd' [-Wunused-variable] cn3dmodl.c:507:11: warning: unused variable 'pdnmg' [-Wunused-variable] cn3dmodl.c:506:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dmodl.c: In function 'fnAlignList': cn3dmodl.c:996:25: warning: unused variable 'itemtype' [-Wunused-variable] cn3dmodl.c:996:11: warning: unused variable 'entityID' [-Wunused-variable] cn3dmodl.c:995:14: warning: unused variable 'sipThis' [-Wunused-variable] cn3dmodl.c:993:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dmodl.c: In function 'SynchronizeModVisibleStatus': cn3dmodl.c:1065:11: warning: unused variable 'pdnmg' [-Wunused-variable] cn3dmodl.c:1064:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dmodl.c: In function 'SetResidueVisibilities': cn3dmodl.c:1201:11: warning: unused variable 'pvnmoThis' [-Wunused-variable] cn3dmodl.c: At top level: ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] mv cn3dmodl.o cn3dmodl.glo mv cn3dmodl.tmp cn3dmodl.o mv cn3dshim.o cn3dshim.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dshim.c cn3dshim.c: In function 'Cn3D_Size': cn3dshim.c:413:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dshim.c:412:11: warning: unused variable 'pdnmsSlave' [-Wunused-variable] mv cn3dshim.o cn3dshim.glo mv cn3dshim.tmp cn3dshim.o mv cn3dmesh.o cn3dmesh.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmesh.c cn3dmesh.c: In function 'Cn3D_MeshAcceptProc': cn3dmesh.c:103:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dmesh.c: In function 'Cn3D_OpenMesh': cn3dmesh.c:151:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] cn3dmesh.c: In function 'Cn3D_MeshAcceptProc': cn3dmesh.c:111:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cn3dmesh.c:119:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cn3dmesh.c:129:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cn3dmesh.c:133:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] mv cn3dmesh.o cn3dmesh.glo mv cn3dmesh.tmp cn3dmesh.o mv cn3dstyl.o cn3dstyl.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dstyl.c cn3dstyl.c: In function 'GetThisSpecialAlgorRenderSet': cn3dstyl.c:459:27: warning: unused variable 'sfipThis' [-Wunused-variable] cn3dstyl.c: In function 'GetSpecialAlgorRenderSet': cn3dstyl.c:641:10: warning: unused variable 'parsThis' [-Wunused-variable] cn3dstyl.c:640:23: warning: unused variable 'sfpThis' [-Wunused-variable] cn3dstyl.c: In function 'ChangeSpecialLabelsProc': cn3dstyl.c:867:16: warning: unused variable 'TopOn' [-Wunused-variable] cn3dstyl.c:866:44: warning: unused variable 'PDBOn' [-Wunused-variable] cn3dstyl.c:864:17: warning: unused variable 'k' [-Wunused-variable] cn3dstyl.c: In function 'ModelSetLabelCtrls': cn3dstyl.c:1059:37: warning: variable 'size' set but not used [-Wunused-but-set-variable] cn3dstyl.c: In function 'lFeatureEditedAction': cn3dstyl.c:1136:10: warning: unused variable 'val' [-Wunused-variable] cn3dstyl.c: In function 'bFeatureMoveAction': cn3dstyl.c:1153:23: warning: unused variable 'sfpThis' [-Wunused-variable] cn3dstyl.c: In function 'bFeatureEditAction': cn3dstyl.c:1176:23: warning: unused variable 'sfpThis' [-Wunused-variable] cn3dstyl.c: In function 'ModelControls': cn3dstyl.c:1364:19: warning: variable 'ppt13' set but not used [-Wunused-but-set-variable] cn3dstyl.c:1363:9: warning: unused variable 'ppt11' [-Wunused-variable] cn3dstyl.c:1362:60: warning: unused variable 'ppt9' [-Wunused-variable] cn3dstyl.c:1362:36: warning: variable 'ppt5' set but not used [-Wunused-but-set-variable] cn3dstyl.c:1362:12: warning: variable 'ppt1' set but not used [-Wunused-but-set-variable] cn3dstyl.c: In function 'GetBiostrucFeatureLocationForHihglightedResidues': cn3dstyl.c:1728:30: warning: variable 'SingleInterval' set but not used [-Wunused-but-set-variable] cn3dstyl.c:1725:20: warning: variable 'iMolCurrent' set but not used [-Wunused-but-set-variable] cn3dstyl.c: In function 'MakeBiostrucFeatureSetForUserDefinedFeature': cn3dstyl.c:2122:60: warning: unused variable 'bsfsp_tail' [-Wunused-variable] cn3dstyl.c:2122:41: warning: unused variable 'bsfsp_head' [-Wunused-variable] cn3dstyl.c: In function 'GetUserDefinedFeature': cn3dstyl.c:2196:27: warning: unused variable 'sfipThis' [-Wunused-variable] cn3dstyl.c: In function 'Cn3DIndexUserDefinedFeature': cn3dstyl.c:2551:23: warning: variable 'sfpThis' set but not used [-Wunused-but-set-variable] cn3dstyl.c:2549:10: warning: unused variable 'pmmdThis' [-Wunused-variable] cn3dstyl.c:2548:11: warning: unused variable 'pdnmmHead' [-Wunused-variable] cn3dstyl.c:2547:10: warning: unused variable 'pmsdThis' [-Wunused-variable] cn3dstyl.c: At top level: ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] cn3dstyl.c:144:14: warning: 'Cn3D_pupModelStyleItem' defined but not used [-Wunused-variable] cn3dstyl.c:149:15: warning: 'bResetFeatureTitle' defined but not used [-Wunused-variable] cn3dstyl.c:456:30: warning: 'GetThisSpecialAlgorRenderSet' defined but not used [-Wunused-function] cn3dstyl.c: In function 'CopyLocation': cn3dstyl.c:496:27: warning: 'rsipNewHead' may be used uninitialized in this function [-Wuninitialized] mv cn3dstyl.o cn3dstyl.glo mv cn3dstyl.tmp cn3dstyl.o mv seqcons.o seqcons.tmp gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL seqcons.c ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] seqcons.c: In function 'CSC_Algorithm_ByBlosum62': seqcons.c:402:43: warning: 'minScore' may be used uninitialized in this function [-Wuninitialized] seqcons.c:402:67: warning: 'maxScore' may be used uninitialized in this function [-Wuninitialized] mv seqcons.o seqcons.glo mv seqcons.tmp seqcons.o rm -f libncbicn3dOGL.a ar cru libncbicn3dOGL.a algorend.glo cn3dmsel.glo cn3dopen.glo cn3dsave.glo cn3dxprt.glo cn3dwin.glo cn3dentr.glo cn3dmsg.glo cn3dmatn.glo cn3dmodl.glo cn3dshim.glo cn3dmesh.glo cn3dstyl.glo seqcons.glo cp -p libncbicn3dOGL.a ../lib ranlib ../lib/libncbicn3dOGL.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF aa_ungapped.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_diagnostics.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_engine.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_extend.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_filter.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_gapalign.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_hits.c blast_hits.c: In function 'Blast_HSPListReapByRawScore': blast_hits.c:1723:11: warning: variable 'cutoff' set but not used [-Wunused-but-set-variable] blast_hits.c: At top level: blast_hits.c:2997:12: warning: 's_SortHspWrapEvalue' defined but not used [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_itree.c blast_itree.c: In function 'BlastIntervalTreeMasksHSP': blast_itree.c:1121:10: warning: variable 'tmp_qstart' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_lookup.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_message.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_options.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_seg.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_seqsrc.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_sw.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_setup.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_stat.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_traceback.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_util.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF gapinfo.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF greedy_align.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF link_hsps.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF lookup_wrap.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF na_ungapped.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_math.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_std.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF pattern.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF phi_extend.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF phi_lookup.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF lookup_util.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_encoding.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_psi.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_psi_priv.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_kappa.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF matrix_freq_ratios.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_hspstream.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_parameters.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_posit.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF phi_gapalign.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_program.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_query_info.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_tune.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_aalookup.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_nalookup.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_aascan.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_nascan.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_dynarray.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF split_query.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF gencode_singleton.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF index_ungapped.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF hspfilter_collector.c rm -f libblast.a ar cru libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_itree.o blast_lookup.o blast_message.o blast_options.o blast_seg.o blast_seqsrc.o blast_sw.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o link_hsps.o lookup_wrap.o na_ungapped.o ncbi_math.o ncbi_std.o pattern.o phi_extend.o phi_lookup.o lookup_util.o blast_encoding.o blast_psi.o blast_psi_priv.o blast_kappa.o matrix_freq_ratios.o blast_hspstream.o blast_parameters.o blast_posit.o phi_gapalign.o blast_program.o blast_query_info.o blast_tune.o blast_aalookup.o blast_nalookup.o blast_aascan.o blast_nascan.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o hspfilter_collector.o cp -p libblast.a ../lib ranlib ../lib/libblast.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_api.c blast_api.c: In function 's_BlastRPSInfoInit': blast_api.c:149:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:151:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:152:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:153:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:154:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:155:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:156:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:157:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:161:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] blast_api.c:162:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_input.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_format.c blast_format.c: In function 's_MBXmlInit': blast_format.c:255:13: warning: variable 'retval' set but not used [-Wunused-but-set-variable] blast_format.c: In function 's_LoadMatrix': blast_format.c:673:18: warning: array subscript has type 'char' [-Wchar-subscripts] blast_format.c:673:18: warning: array subscript has type 'char' [-Wchar-subscripts] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_mtlock.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_options_api.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_prelim.c blast_prelim.c: In function 'Blast_PrelimSearchThreadRun': blast_prelim.c:100:9: warning: variable 'status' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_returns.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_seq.c blast_seq.c: In function 's_SeqLocFillSequenceBuffer': blast_seq.c:529:10: warning: variable 'seq_code' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_seqalign.c blast_seqalign.c: In function 's_HSPListToSeqAlignUngapped': blast_seqalign.c:343:26: warning: variable 'hspset_cnt_old' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_tabular.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF repeats_filter.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF seqsrc_multiseq.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF seqsrc_readdb.c seqsrc_readdb.c: In function 's_ReaddbGetNextChunk': seqsrc_readdb.c:375:11: warning: variable 'real_readdb_entries' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF twoseq_api.c twoseq_api.c: In function 's_TwoSeqBasicFillOptions': twoseq_api.c:100:10: warning: unused variable 'status' [-Wunused-variable] twoseq_api.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF dust_filter.c dust_filter.c: In function 's_GetFilteringLocations': dust_filter.c:171:32: warning: unused variable 'filter_slp_rev' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF blast_message_api.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -D_PNG -I../include -DWIN_MOTIF hspfilter_queue.c hspfilter_queue.c: In function 's_BlastHSPQueueInit': hspfilter_queue.c:65:24: warning: unused variable 'q_data' [-Wunused-variable] rm -f libblastapi.a ar cru libblastapi.a blast_api.o blast_input.o blast_format.o blast_mtlock.o blast_options_api.o blast_prelim.o blast_returns.o blast_seq.o blast_seqalign.o blast_tabular.o repeats_filter.o seqsrc_multiseq.o seqsrc_readdb.o twoseq_api.o dust_filter.o blast_message_api.o hspfilter_queue.o cp -p libblastapi.a ../lib ranlib ../lib/libblastapi.a gcc -o asntool -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -L../shlib asntool.c asncode.c ../lib/libncbi.a -lm asntool.c: In function 'Nlm_Main': asntool.c:211:42: warning: unused variable 'objmgrentry' [-Wunused-variable] asncode.c: In function 'AsnCode_SETOF_base_or_user': asncode.c:1602:20: warning: variable 'real_type' set but not used [-Wunused-but-set-variable] asncode.c:1601:20: warning: variable 'valslot' set but not used [-Wunused-but-set-variable] asncode.c: In function 'userobj_SEQSET': asncode.c:2374:9: warning: too many arguments for format [-Wformat-extra-args] asncode.c: In function 'userobj_and_basetype_SETOF': asncode.c:2753:4: warning: too many arguments for format [-Wformat-extra-args] asncode.c:2768:4: warning: too many arguments for format [-Wformat-extra-args] asncode.c:2556:20: warning: variable 'valslot' set but not used [-Wunused-but-set-variable] asncode.c: In function 'AsnCodeIsReallyChoice': asncode.c:3285:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] asncode.c: In function 'AsnCodeCheckFileDoneRoutines': asncode.c:3475:6: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'AsnCodeSpooledPtr' [-Wformat] asncode.c: In function 'AsnIterTakeBufReal': asncode.c:3512:7: warning: format '%x' expects argument of type 'unsigned int', but argument 4 has type 'AsnCodeSpooledPtr' [-Wformat] asncode.c: In function 'AsnCodeFunctionWriteFuncChoiceStart': asncode.c:3707:20: warning: variable 'obj_use' set but not used [-Wunused-but-set-variable] asncode.c: In function 'AsnCodeIter': asncode.c:4321:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] asncode.c: In function 'AsnCode': asncode.c:4644:6: warning: too many arguments for format [-Wformat-extra-args] asncode.c:4400:48: warning: variable 'objnamety' set but not used [-Wunused-but-set-variable] asncode.c: At top level: asncode.c:370:17: warning: 'defptr' defined but not used [-Wunused-variable] asncode.c:372:17: warning: 'defbigint' defined but not used [-Wunused-variable] asncode.c:373:17: warning: 'defreal' defined but not used [-Wunused-variable] asncode.c:374:17: warning: 'defbool' defined but not used [-Wunused-variable] asncode.c:375:17: warning: 'defbyte' defined but not used [-Wunused-variable] cp -p asntool ../bin make[2]: Leaving directory `/build/buildd/ncbi-tools6-6.1.20110713/build' /usr/bin/make -C build -f makedemo.unx LCL=lnx CC="gcc " LDFLAGS1="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" NCBI_LINKINGLIBDIR="../shlib" \ CFLAGS1="-c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" VIBLIBS= VIBFLAG= LIB50=-lpcre make[2]: Entering directory `/build/buildd/ncbi-tools6-6.1.20110713/build' ./ln-if-absent ../demo/*.* . ./ln-if-absent ../regexp/test/*.* . ./ln-if-absent ../regexp/demo/*.* . ./ln-if-absent ../internal/*.* . set: No match. make[2]: [copy] Error 1 (ignored) chmod -R ug+rw,o+r . echo Waiting...go Waiting...go gcc -o testcore -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib testcore.c -lncbi -lm testcore.c: In function 'TestMemory': testcore.c:232:5: warning: statement with no effect [-Wunused-value] testcore.c: In function 'BuildBS': testcore.c:326:13: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] testcore.c: At top level: testcore.c:334:13: warning: 'TestStrings' defined but not used [-Wunused-function] gcc -o makeset -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib makeset.c -lncbi In file included from makeset.c:9:0: ../include/all.h:7035:0: warning: "RNA_QUAL" redefined [enabled by default] ../include/all.h:5608:0: note: this is the location of the previous definition makeset.c: In function 'Nlm_Main': makeset.c:27:26: warning: unused variable 'uid' [-Wunused-variable] makeset.c:27:16: warning: unused variable 'tempseek' [-Wunused-variable] makeset.c:27:7: warning: unused variable 'seekptr' [-Wunused-variable] gcc -o getmesh -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib getmesh.c -lncbi gcc -o indexpub -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib indexpub.c -lncbi indexpub.c: In function 'Nlm_Main': indexpub.c:60:4: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] indexpub.c:60:4: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Nlm_Int4' [-Wformat] gcc -o getpub -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib getpub.c -lncbi getpub.c: In function 'Nlm_Main': getpub.c:64:3: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'Nlm_Int4 *' [-Wformat] getpub.c:64:3: warning: format '%ld' expects argument of type 'long int *', but argument 4 has type 'Nlm_Int4 *' [-Wformat] gcc -o testobj -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib testobj.c -lncbiobj -lncbi -lm gcc -o seqtest -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib seqtest.c -lncbiobj -lncbi -lm seqtest.c: In function 'Nlm_Main': seqtest.c:99:3: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] seqtest.c:99:3: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Nlm_Int4' [-Wformat] seqtest.c:99:3: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'Nlm_Int4' [-Wformat] seqtest.c:103:5: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] gcc -o dosimple -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib dosimple.c -lncbiobj -lncbi -lm gcc -o asn2ff -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib asn2ff.c -lncbiobj -lncbi asn2ff.c: In function 'Nlm_Main': asn2ff.c:129:10: warning: unused variable 'good' [-Wunused-variable] asn2ff.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] asn2ff.c: In function 'Nlm_Main': asn2ff.c:405:13: warning: 'atp2' may be used uninitialized in this function [-Wuninitialized] asn2ff.c:352:9: warning: 'atp1' may be used uninitialized in this function [-Wuninitialized] gcc -o checksub -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib checksub.c -lncbiobj -lncbi gcc -o asndhuff -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib asndhuff.c -lncbicdr -lncbiobj -lncbi asndhuff.c: In function 'do_medline': asndhuff.c:182:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] asndhuff.c: In function 'do_sequence': asndhuff.c:221:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] asndhuff.c:200:10: warning: unused variable 'val' [-Wunused-variable] gcc -o entrcmd -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib entrcmd.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm entrcmd.c: In function 'PrintDSPMwww': entrcmd.c:370:21: warning: unused variable 'lsp' [-Wunused-variable] entrcmd.c: In function 'PrintDSPNwww': entrcmd.c:462:21: warning: unused variable 'lsp' [-Wunused-variable] entrcmd.c: In function 'PrintDSPPwww': entrcmd.c:566:21: warning: unused variable 'lsp' [-Wunused-variable] entrcmd.c: In function 'ProcessOutput': entrcmd.c:722:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] entrcmd.c:730:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] entrcmd.c:773:17: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat] entrcmd.c:887:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] entrcmd.c:895:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] entrcmd.c:915:17: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat] entrcmd.c: In function 'TermProcessing': entrcmd.c:1294:13: warning: variable 'inclusive' set but not used [-Wunused-but-set-variable] entrcmd.c:1293:13: warning: variable 'endWithTerm' set but not used [-Wunused-but-set-variable] entrcmd.c:1292:13: warning: variable 'beginWithTerm' set but not used [-Wunused-but-set-variable] entrcmd.c: At top level: entrcmd.c:281:16: warning: 'IsGenBank' defined but not used [-Wunused-function] entrcmd.c: In function 'LinkSetToLocalLinkSet': entrcmd.c:209:5: warning: 'lsp' may be used uninitialized in this function [-Wuninitialized] entrcmd.c: In function 'TermProcessing': entrcmd.c:1384:43: warning: 'ratio' may be used uninitialized in this function [-Wuninitialized] entrcmd.c: In function 'Nlm_Main': entrcmd.c:1545:17: warning: 'db' may be used uninitialized in this function [-Wuninitialized] entrcmd.c:1473:13: note: 'db' was declared here entrcmd.c:1599:31: warning: 'vector' may be used uninitialized in this function [-Wuninitialized] entrcmd.c:1579:13: note: 'vector' was declared here entrcmd.c:2204:24: warning: 'neighborFile' may be used uninitialized in this function [-Wuninitialized] entrcmd.c:1444:32: warning: 'taxString' may be used uninitialized in this function [-Wuninitialized] entrcmd.c:1914:13: note: 'taxString' was declared here entrcmd.c:2228:23: warning: 'termString' may be used uninitialized in this function [-Wuninitialized] entrcmd.c:2134:12: warning: 'boolString' may be used uninitialized in this function [-Wuninitialized] gcc -o errhdr -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib errhdr.c -lncbi In file included from /usr/include/string.h:642:0, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from errhdr.c:1: In function 'strncat', inlined from 'main' at errhdr.c:44:11: /usr/include/i386-linux-gnu/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] gcc -o cdscan -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib cdscan.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm cdscan.c:133:13: warning: 'root' defined but not used [-Wunused-variable] cdscan.c:392:13: warning: 'GenBankPubs' defined but not used [-Wunused-function] cdscan.c:576:13: warning: 'SeqEntryToFeat' defined but not used [-Wunused-function] gcc -o findspl -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib findspl.c -lncbiacc -lncbiobj -lncbi gcc -o ncbisort -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib sortcmd.c -lncbitool -lblastcompadj \ -lncbi -lm gcc -o fa2htgs -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib fa2htgs.c -lncbiobj -lncbi fa2htgs.c: In function 'Nlm_Main': fa2htgs.c:474:25: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized] fa2htgs.c:448:16: note: 'dsp' was declared here gcc -o fastacmd -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib fastacmd.c -lncbitool -lncbi gcc -o formatdb -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib formatdb.c -lncbitool -lncbiobj -lncbi ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -o formatrpsdb -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib formatrpsdb.c -lncbitool \ -lblast -lncbiobj -lncbi ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] formatrpsdb.c: In function 'RPSUpdateStatistics': formatrpsdb.c:440:43: warning: 'j' may be used uninitialized in this function [-Wuninitialized] formatrpsdb.c: In function 'RPSUpdatePSSM': formatrpsdb.c:575:27: warning: 'j' may be used uninitialized in this function [-Wuninitialized] gcc -o blastall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib blastall.c -lblastapi \ -lblast -lncbitool -lncbiobj -lncbi blastall.c: In function 'Main_new': blastall.c:1484:9: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'Nlm_Int4 *' [-Wformat] blastall.c: In function 'Main_old': blastall.c:1809:26: warning: variable 'nuc_concat' set but not used [-Wunused-but-set-variable] blastall.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] blastall.c: In function 'Main_old': blastall.c:2407:74: warning: 'fake_bsp_arr' may be used uninitialized in this function [-Wuninitialized] blastall.c:2712:40: warning: 'seq_annot_arr' may be used uninitialized in this function [-Wuninitialized] blastall.c:2465:5: warning: 'num_bsps' may be used uninitialized in this function [-Wuninitialized] blastall.c:2615:18: warning: 'next_seqalign' may be used uninitialized in this function [-Wuninitialized] blastall.c:2706:36: warning: 'seqalign' may be used uninitialized in this function [-Wuninitialized] blastall.c:2625:28: warning: 'sap' may be used uninitialized in this function [-Wuninitialized] blastall.c:2892:38: warning: 'err_ticket' may be used uninitialized in this function [-Wuninitialized] blastall.c:2813:25: warning: 'xml_aip' may be used uninitialized in this function [-Wuninitialized] gcc -o blastpgp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib blastpgp.c -lncbitool \ -lncbiobj -lncbi blastpgp.c: In function 'PGPFormatFooter': blastpgp.c:1290:32: warning: variable 'dbinfo_head' set but not used [-Wunused-but-set-variable] blastpgp.c: In function 'Nlm_Main': blastpgp.c:1685:14: warning: variable 'alignCheckpoint' set but not used [-Wunused-but-set-variable] blastpgp.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -o testval -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib testval.c -lncbiobj -lncbi -lm testval.c: In function 'Nlm_Main': testval.c:188:9: warning: 'atp2' may be used uninitialized in this function [-Wuninitialized] testval.c:183:9: warning: 'atp' may be used uninitialized in this function [-Wuninitialized] gcc -o seedtop -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib seedtop.c -lncbitool \ -lncbiobj -lncbi seedtop.c: In function 'Nlm_Main': seedtop.c:363:36: warning: suggest parentheses around assignment used as truth value [-Wparentheses] gcc -o makemat -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib makemat.c -lncbitool \ -lncbiobj -lncbi ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] makemat.c: In function 'convertToMatrices': makemat.c:277:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] makemat.c:279:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] makemat.c:290:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] makemat.c:292:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] makemat.c: In function 'makeMatrixName': makemat.c:97:15: warning: 'lastc' may be used uninitialized in this function [-Wuninitialized] makemat.c: In function 'Nlm_Main': makemat.c:437:27: warning: 'sbp' may be used uninitialized in this function [-Wuninitialized] makemat.c:244:23: note: 'sbp' was declared here makemat.c:416:24: warning: 'relativeMatrixFileName' may be used uninitialized in this function [-Wuninitialized] makemat.c:230:29: note: 'relativeMatrixFileName' was declared here makemat.c:462:6: warning: 'prefixLength' may be used uninitialized in this function [-Wuninitialized] gcc -o copymat -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib copymat.c -lblast -lncbitool \ -lncbi copymat.c: In function 'RPSCreateLookupFile': copymat.c:622:10: warning: variable 'start' set but not used [-Wunused-but-set-variable] copymat.c: In function 'findTotalLength': copymat.c:429:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:430:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:431:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:432:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:433:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:434:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:435:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:436:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:439:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:440:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c: In function 'readAllMatrices': copymat.c:383:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:385:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c: In function 'readNextMatrix': copymat.c:299:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:301:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:304:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:305:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:306:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:307:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:309:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:310:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:311:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:312:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:314:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:315:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:316:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:317:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] copymat.c:319:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] copymat.c: In function 'Nlm_Main': copymat.c:762:7: warning: 'prefixLength' may be used uninitialized in this function [-Wuninitialized] gcc -o impala -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib profiles.c -lncbitool \ -lncbiobj -lncbi -lm profiles.c: In function 'Nlm_Main': profiles.c:1430:16: warning: variable 'spp' set but not used [-Wunused-but-set-variable] profiles.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] profiles.c: In function 'findProfileParams': profiles.c:461:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:462:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:463:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:464:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:465:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:466:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:467:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:468:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:471:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:472:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c: In function 'findMatchingProfiles': profiles.c:1104:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:1106:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:1117:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:1119:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c: In function 'computeL': profiles.c:379:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:380:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:381:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:382:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:383:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:397:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:398:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:399:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:412:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:414:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c: In function 'readkbp': profiles.c:267:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:273:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:276:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:277:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:278:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:279:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:281:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:282:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:283:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:284:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c: In function 'readSequence': profiles.c:204:11: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] profiles.c:206:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c:235:11: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] profiles.c:237:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] profiles.c: In function 'readSequence.isra.5': profiles.c:252:38: warning: 'query' may be used uninitialized in this function [-Wuninitialized] profiles.c: In function 'findMatchingProfiles': profiles.c:1164:32: warning: 'scaledInitialUngappedLambda' may be used uninitialized in this function [-Wuninitialized] profiles.c:1164:32: warning: 'correctUngappedLambda' may be used uninitialized in this function [-Wuninitialized] profiles.c:1161:19: warning: 'LambdaRatio' may be used uninitialized in this function [-Wuninitialized] profiles.c:966:13: warning: 'prefixLength' may be used uninitialized in this function [-Wuninitialized] profiles.c:1108:13: warning: 'c1' may be used uninitialized in this function [-Wuninitialized] profiles.c: In function 'Nlm_Main': profiles.c:1769:16: warning: 'txmatrix' may be used uninitialized in this function [-Wuninitialized] profiles.c:1767:11: warning: 'matrix' may be used uninitialized in this function [-Wuninitialized] profiles.c:1775:11: warning: 'search' may be used uninitialized in this function [-Wuninitialized] profiles.c:1761:21: warning: 'options' may be used uninitialized in this function [-Wuninitialized] profiles.c:1779:25: warning: 'fake_bsp' may be used uninitialized in this function [-Wuninitialized] profiles.c:1746:14: warning: 'prune' may be used uninitialized in this function [-Wuninitialized] gcc -o megablast -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib megablast.c -lblastapi \ -lblast -lncbitool -lncbiobj -lncbi megablast.c: In function 'BLAST_FillOptions': megablast.c:1908:9: warning: unused variable 'windows' [-Wunused-variable] megablast.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -o vecscreen -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib vecscreen.c -lncbitool \ -lncbiobj -lncbi ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -o gil2bin -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib gil2bin.c -lncbitool -lncbi gil2bin.c: In function 'MakeGiFileText': gil2bin.c:73:9: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] gcc -o blastclust -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib blastclust.c -lncbitool \ -lncbiobj -lncbi blastclust.c: In function 'BlastClusterNeighbours': blastclust.c:430:17: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] blastclust.c: In function 'Nlm_Main': blastclust.c:1064:8: warning: suggest parentheses around assignment used as truth value [-Wparentheses] blastclust.c:1230:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat] blastclust.c:1268:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Nlm_Int4' [-Wformat] blastclust.c:1268:21: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'Nlm_Int4' [-Wformat] blastclust.c:1271:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Nlm_Int4' [-Wformat] blastclust.c:1275:25: warning: variable 'head' set but not used [-Wunused-but-set-variable] blastclust.c:1331:22: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat] blastclust.c:958:11: warning: variable 'align_type' set but not used [-Wunused-but-set-variable] blastclust.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] blastclust.c: In function 'PrintNeighbors': blastclust.c:782:39: warning: 'context' may be used uninitialized in this function [-Wuninitialized] blastclust.c:776:35: warning: 'query_length' may be used uninitialized in this function [-Wuninitialized] blastclust.c:877:22: warning: 'hsp_info_array' may be used uninitialized in this function [-Wuninitialized] blastclust.c:760:15: warning: 'hsp' may be used uninitialized in this function [-Wuninitialized] blastclust.c: In function 'Nlm_Main': blastclust.c:965:28: warning: 'progressfp' may be used uninitialized in this function [-Wuninitialized] gcc -o rpsblast -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib rpsblast.c -lblastapi \ -lblast -lncbitool -lncbiobj -lncbi rpsblast.c: In function 'Nlm_Main': rpsblast.c:567:22: warning: variable 'program_number' set but not used [-Wunused-but-set-variable] rpsblast.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -o asn2xml -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib asn2xml.c -lncbiobj -lncbi gcc -o debruijn -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib debruijn.c -lblast -lncbi debruijn.c: In function 'Nlm_Main': debruijn.c:72:12: warning: pointer targets in assignment differ in signedness [-Wpointer-sign] debruijn.c:80:3: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness [-Wpointer-sign] /usr/include/string.h:399:15: note: expected 'const char *' but argument is of type 'Nlm_Uint1 *' debruijn.c:89:10: warning: pointer targets in assignment differ in signedness [-Wpointer-sign] debruijn.c:106:3: warning: pointer targets in passing argument 1 of 'puts' differ in signedness [-Wpointer-sign] /usr/include/stdio.h:692:12: note: expected 'const char *' but argument is of type 'Nlm_Uint1 *' debruijn.c:109:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -o asn2idx -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib asn2idx.c -lncbiobj -lncbi gcc -o sortbyquote -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib sortbyquote.c -lncbi gcc -o subfuse -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib subfuse.c -lncbiobj -lncbi subfuse.c: In function 'Nlm_Main': subfuse.c:151:3: warning: implicit declaration of function 'UseLocalAsnloadDataAndErrMsg' [-Wimplicit-function-declaration] gcc -o test_regexp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib pcretest.c -lpcre gcc -o demo_regexp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib pcredemo.c -lpcre gcc -o demo_regexp_grep -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib pcregrep.c -lpcre make[2]: Leaving directory `/build/buildd/ncbi-tools6-6.1.20110713/build' cd build && rm -f blast blastall blastall_old blastpgp seedtop megablast rpsblast blastclust /usr/bin/make -C build -f makedemo.unx LCL=lnx CC="gcc " LDFLAGS1="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" NCBI_LINKINGLIBDIR="../shlib" \ CFLAGS1="-c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" VIBLIBS= VIBFLAG= THREAD_OBJ="ncbithr.o" \ THREAD_OTHERLIBS="-lpthread" blast blastall blastall_old blastpgp seedtop megablast rpsblast blastclust make[2]: Entering directory `/build/buildd/ncbi-tools6-6.1.20110713/build' ./ln-if-absent ../demo/*.* . ./ln-if-absent ../regexp/test/*.* . ./ln-if-absent ../regexp/demo/*.* . ./ln-if-absent ../internal/*.* . set: No match. make[2]: [copy] Error 1 (ignored) chmod -R ug+rw,o+r . gcc -o blast -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib blast_driver.c ncbithr.o -lblastapi \ -lblast -lncbitool -lncbiobj -lncbi -lpthread gcc -o blastall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib blastall.c ncbithr.o -lblastapi \ -lblast -lncbitool -lncbiobj -lncbi -lpthread blastall.c: In function 'Main_new': blastall.c:1484:9: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'Nlm_Int4 *' [-Wformat] blastall.c: In function 'Main_old': blastall.c:1809:26: warning: variable 'nuc_concat' set but not used [-Wunused-but-set-variable] blastall.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] blastall.c: In function 'Main_old': blastall.c:2407:74: warning: 'fake_bsp_arr' may be used uninitialized in this function [-Wuninitialized] blastall.c:2712:40: warning: 'seq_annot_arr' may be used uninitialized in this function [-Wuninitialized] blastall.c:2465:5: warning: 'num_bsps' may be used uninitialized in this function [-Wuninitialized] blastall.c:2615:18: warning: 'next_seqalign' may be used uninitialized in this function [-Wuninitialized] blastall.c:2706:36: warning: 'seqalign' may be used uninitialized in this function [-Wuninitialized] blastall.c:2625:28: warning: 'sap' may be used uninitialized in this function [-Wuninitialized] blastall.c:2892:38: warning: 'err_ticket' may be used uninitialized in this function [-Wuninitialized] blastall.c:2813:25: warning: 'xml_aip' may be used uninitialized in this function [-Wuninitialized] gcc -o blastall_old -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DBLASTALL_TOOLS_ONLY blastall.c \ ncbithr.o -lncbitool -lncbiobj -lncbi -lpthread blastall.c: In function 'Main_old': blastall.c:1809:26: warning: variable 'nuc_concat' set but not used [-Wunused-but-set-variable] blastall.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] blastall.c:2928:1: warning: 'readdb_use_new_blast' defined but not used [-Wunused-function] blastall.c: In function 'Main_old': blastall.c:2407:74: warning: 'fake_bsp_arr' may be used uninitialized in this function [-Wuninitialized] blastall.c:2712:40: warning: 'seq_annot_arr' may be used uninitialized in this function [-Wuninitialized] blastall.c:2465:5: warning: 'num_bsps' may be used uninitialized in this function [-Wuninitialized] blastall.c:2615:18: warning: 'next_seqalign' may be used uninitialized in this function [-Wuninitialized] blastall.c:2706:36: warning: 'seqalign' may be used uninitialized in this function [-Wuninitialized] blastall.c:2625:28: warning: 'sap' may be used uninitialized in this function [-Wuninitialized] blastall.c:2892:38: warning: 'err_ticket' may be used uninitialized in this function [-Wuninitialized] blastall.c:2813:25: warning: 'xml_aip' may be used uninitialized in this function [-Wuninitialized] gcc -o blastpgp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib blastpgp.c ncbithr.o -lncbitool \ -lncbiobj -lncbi -lpthread blastpgp.c: In function 'PGPFormatFooter': blastpgp.c:1290:32: warning: variable 'dbinfo_head' set but not used [-Wunused-but-set-variable] blastpgp.c: In function 'Nlm_Main': blastpgp.c:1685:14: warning: variable 'alignCheckpoint' set but not used [-Wunused-but-set-variable] blastpgp.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -o seedtop -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib seedtop.c ncbithr.o -lncbitool \ -lncbiobj -lncbi -lpthread seedtop.c: In function 'Nlm_Main': seedtop.c:363:36: warning: suggest parentheses around assignment used as truth value [-Wparentheses] gcc -o megablast -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib megablast.c ncbithr.o -lblastapi \ -lblast -lncbitool -lncbiobj -lncbi -lpthread megablast.c: In function 'BLAST_FillOptions': megablast.c:1908:9: warning: unused variable 'windows' [-Wunused-variable] megablast.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -o rpsblast -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib rpsblast.c ncbithr.o -lblastapi \ -lblast -lncbitool -lncbiobj -lncbi -lpthread rpsblast.c: In function 'Nlm_Main': rpsblast.c:567:22: warning: variable 'program_number' set but not used [-Wunused-but-set-variable] rpsblast.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -o blastclust -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib blastclust.c ncbithr.o -lncbitool \ -lncbiobj -lncbi -lpthread blastclust.c: In function 'BlastClusterNeighbours': blastclust.c:430:17: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] blastclust.c: In function 'Nlm_Main': blastclust.c:1064:8: warning: suggest parentheses around assignment used as truth value [-Wparentheses] blastclust.c:1230:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat] blastclust.c:1268:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Nlm_Int4' [-Wformat] blastclust.c:1268:21: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'Nlm_Int4' [-Wformat] blastclust.c:1271:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Nlm_Int4' [-Wformat] blastclust.c:1275:25: warning: variable 'head' set but not used [-Wunused-but-set-variable] blastclust.c:1331:22: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat] blastclust.c:958:11: warning: variable 'align_type' set but not used [-Wunused-but-set-variable] blastclust.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] blastclust.c: In function 'PrintNeighbors': blastclust.c:782:39: warning: 'context' may be used uninitialized in this function [-Wuninitialized] blastclust.c:776:35: warning: 'query_length' may be used uninitialized in this function [-Wuninitialized] blastclust.c:877:22: warning: 'hsp_info_array' may be used uninitialized in this function [-Wuninitialized] blastclust.c:760:15: warning: 'hsp' may be used uninitialized in this function [-Wuninitialized] blastclust.c: In function 'Nlm_Main': blastclust.c:965:28: warning: 'progressfp' may be used uninitialized in this function [-Wuninitialized] make[2]: Leaving directory `/build/buildd/ncbi-tools6-6.1.20110713/build' /usr/bin/make -C build -f makenet.unx LCL=lnx CC="gcc " LDFLAGS1="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" NCBI_LINKINGLIBDIR="../shlib" \ CFLAGS1="-c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" THREAD_OBJ="ncbithr.o" \ THREAD_OTHERLIBS="-lpthread" \ NETENTREZVERSION="2.02c2ASN1SPEC6" BLIB31=libvibnet.a \ OGLLIBS= VIBLIBS= VIB="Psequin sbtedit udv ddv blastcl3 taxblast idfetch bl2seq asn2gb tbl2asn gene2xml entrez2 gbseqget asn2all asn2asn asn2fsa asn2xml asndisc asnmacro asnval cleanasn insdseqget nps2gps spidey trna2sap trna2tbl Cn3D" make[2]: Entering directory `/build/buildd/ncbi-tools6-6.1.20110713/build' ./ln-if-absent ../connect/test/*.c . ./ln-if-absent ../network/entrez/client/*.h ../include ./ln-if-absent ../network/entrez/client/*.c . ./ln-if-absent ../network/medarch/client/*.h ../include ./ln-if-absent ../network/medarch/client/*.c . ./ln-if-absent ../network/taxonomy/client/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/taxonomy/client/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/taxon1/common/*.h ../include ./ln-if-absent ../network/taxon1/common/*.c . ./ln-if-absent ../network/taxon1/taxon2/*.h ../include ./ln-if-absent ../network/taxon1/taxon2/*.c . ./ln-if-absent ../network/id0arch/client/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/id0arch/client/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/id1arch/*.h ../include ./ln-if-absent ../network/id1arch/*.c . ./ln-if-absent ../network/id2arch/*.h ../include ./ln-if-absent ../network/id2arch/*.c . ./ln-if-absent ../network/spell/client/*.h ../include ./ln-if-absent ../network/spell/client/*.c . ./ln-if-absent ../network/suggest/client/*.h ../include ./ln-if-absent ../network/suggest/client/*.c . ./ln-if-absent ../network/blast3/client/*.h ../include ./ln-if-absent ../network/blast3/client/*.c . ./ln-if-absent ../tools/taxblast.h ../include ./ln-if-absent ../tools/taxblast.c . ./ln-if-absent /*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/misc/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/misc/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ssparse/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ssparse/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libparsn/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libparsn/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/smart/smartnet/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/smart/smartnet/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/www/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/www/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/query/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../internal/query/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/ctlib/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/ctlib/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/oslib/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/oslib/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/idloadlib/*.c . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/idloadlib/*.h ../include set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/nsclilib/*.h ../include ./ln-if-absent ../network/nsclilib/*.c . ./ln-if-absent ../network/vibnet/*.c . ./ln-if-absent ../network/vibnet/*.h ../include ./ln-if-absent ../cdromlib/*.h ../include ./ln-if-absent ../network/wwwblast/Src/*.c . ./ln-if-absent ../cdromlib/accentr.c . ./ln-if-absent ../cdromlib/accutils.c . ./ln-if-absent ../sequin/*.* . ./ln-if-absent ../demo/entrez.c . ./ln-if-absent ../demo/seqget.c . ./ln-if-absent ../demo/entrcmd.c . ./ln-if-absent ../demo/batch.c . ./ln-if-absent ../demo/qbatch.c . ./ln-if-absent ../demo/elecpcr.c . ./ln-if-absent ../demo/asn2fast.c . ./ln-if-absent ../demo/asn2asn.c . ./ln-if-absent ../demo/cleanasn.c . ./ln-if-absent ../demo/cspeedtest.c . ./ln-if-absent ../demo/sqn2agp.c . ./ln-if-absent ../demo/sugint.c . ./ln-if-absent ../demo/fetchent.c . ./ln-if-absent ../demo/udvmain.c . ./ln-if-absent ../demo/rtestval.c . ./ln-if-absent ../demo/aceread_tst.c . ./ln-if-absent ../demo/asn2ff.c . ./ln-if-absent ../demo/asn2gb.c . ./ln-if-absent ../demo/asn2fsa.c . ./ln-if-absent ../demo/asn2all.c . ./ln-if-absent ../demo/gene2xml.c . ./ln-if-absent ../demo/asnval.c . ./ln-if-absent ../demo/asndisc.c . ./ln-if-absent ../demo/asnbarval.c . ./ln-if-absent ../demo/aceread_tst.c . ./ln-if-absent ../demo/asnmacro.c . ./ln-if-absent ../demo/asnstrip.c . ./ln-if-absent ../demo/tbl2asn.c . ./ln-if-absent ../demo/raw2delt.c . ./ln-if-absent ../demo/flint.c . ./ln-if-absent ../demo/xlint.c . ./ln-if-absent ../demo/diffshift.c . ./ln-if-absent ../demo/gbseqget.c . ./ln-if-absent ../demo/insdseqget.c . ./ln-if-absent ../demo/nps2gps.c . ./ln-if-absent ../demo/testent2.c . ./ln-if-absent ../demo/trna2sap.c . ./ln-if-absent ../demo/trna2tbl.c . ./ln-if-absent ../demo/entrez2.c . ./ln-if-absent ../demo/condense.c . ./ln-if-absent ../demo/spideymain.c . ./ln-if-absent ../demo/dotmain.c . ./ln-if-absent ../demo/ingenmain.c . ./ln-if-absent ../demo/bl2seq.c . ./ln-if-absent ../demo/blastall.c . ./ln-if-absent ../demo/blast_driver.c . ./ln-if-absent ../demo/src_chk.c . ./ln-if-absent ../demo/tbl_chk.c . ./ln-if-absent ../demo/srchnt.c ../demo/srchaa.c ../demo/mts.c ../demo/sigme.c ../demo/dst.c ../demo/ccp.c ../demo/epi.c ../demo/twop.c ../demo/cnsrt.c ../demo/cnsgn.c ../demo/ccpv.c ../demo/dustv.c ../demo/epiv.c ../demo/sigmev.c ../demo/twopv.c ../demo/cnsrtv.c ../demo/cnsgnv.c ../demo/searchv.c . ./ln-if-absent ../network/entrez/server/*.* . set: No match. make[2]: [copy] Error 1 (ignored) ./ln-if-absent ../network/suggest/server/*.* . chmod -R ug+rw,o+r . echo Waiting...go Waiting...go gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_lib_.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_debug.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_service.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_error.c rm -f libnetcli.a ar cru libnetcli.a ni_lib_.o ni_debug.o ni_service.o ni_error.o cp -p libnetcli.a ../lib ranlib ../lib/libnetcli.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netentr.c netentr.c: In function 's_NetEntTLEvalCount': netentr.c:798:5: warning: "/*" within comment [-Wcomment] netentr.c: In function 's_NetDocSumListGet': netentr.c:856:18: warning: variable 'amp' set but not used [-Wunused-but-set-variable] netentr.c: In function 's_NetTermListByTerm': netentr.c:1212:9: warning: variable 'terms_to_read' set but not used [-Wunused-but-set-variable] netentr.c:1200:14: warning: unused variable 'asnout' [-Wunused-variable] netentr.c: In function 's_NetTermListByPage': netentr.c:1343:14: warning: unused variable 'asnout' [-Wunused-variable] netentr.c: In function 'NetEntTLEval': netentr.c:675:5: warning: 'lsp' may be used uninitialized in this function [-Wuninitialized] netentr.c: In function 'NetEntTLEvalCount': netentr.c:800:8: warning: 'atp' may be used uninitialized in this function [-Wuninitialized] netentr.c:782:16: note: 'atp' was declared here netentr.c: In function 'NetTermListByTerm': netentr.c:1286:19: warning: 'next_page' may be used uninitialized in this function [-Wuninitialized] netentr.c:1210:9: note: 'next_page' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netlib.c netlib.c: In function 'BoolExprAsnWrite': netlib.c:304:16: warning: unused variable 'n' [-Wunused-variable] netlib.c: At top level: netlib.c:93:16: warning: 'loaded' defined but not used [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objneten.c objneten.c: In function 'EntrezNeighborTextAsnRead': objneten.c:2938:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c: In function 'ChildLinkAsnRead': objneten.c:3148:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c: In function 'EntrezHierarchyAsnRead': objneten.c:3442:15: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c: In function 'EntrezBlastreqAsnRead': objneten.c:3705:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c:3704:12: warning: unused variable 'isError' [-Wunused-variable] objneten.c: In function 'EntrezExtraInfoAsnRead': objneten.c:3911:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c:3910:12: warning: unused variable 'isError' [-Wunused-variable] objneten.c: In function 'ClusterArticlesAsnRead': objneten.c:4262:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c:4261:12: warning: unused variable 'isError' [-Wunused-variable] objneten.c: In function 'ClusterRespAsnRead': objneten.c:4455:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c: In function 'DateConstraintsAsnRead': objneten.c:4622:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c: In function 'DateVectorAsnRead': objneten.c:4785:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c:4784:12: warning: unused variable 'isError' [-Wunused-variable] objneten.c: In function 'GetByFidAsnRead': objneten.c:4963:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c:4962:12: warning: unused variable 'isError' [-Wunused-variable] objneten.c: In function 'GetFeatIdsAsnRead': objneten.c:5133:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objneten.c:5132:12: warning: unused variable 'isError' [-Wunused-variable] rm -f libnetentr.a ar cru libnetentr.a netentr.o netlib.o objneten.o cp -p libnetentr.a ../lib ranlib ../lib/libnetentr.a ./ln-if-absent accentr.c Naccentr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NETENT_ Naccentr.c Naccentr.c:358:3: warning: missing braces around initializer [-Wmissing-braces] Naccentr.c:358:3: warning: (near initialization for 'AdaptiveDocSumMatrix[0]') [-Wmissing-braces] Naccentr.c: In function 'EntrezDocSumListGet': Naccentr.c:1409:14: warning: variable 'actual' set but not used [-Wunused-but-set-variable] rm -f libncbiNacc.a ar cru libncbiNacc.a Naccentr.o accutils.o cp -p libncbiNacc.a ../lib ranlib ../lib/libncbiNacc.a ./ln-if-absent accentr.c Caccentr.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NET_AND_CD_ Caccentr.c Caccentr.c:358:3: warning: missing braces around initializer [-Wmissing-braces] Caccentr.c:358:3: warning: (near initialization for 'AdaptiveDocSumMatrix[0]') [-Wmissing-braces] Caccentr.c: In function 'EntrezDocSumListGet': Caccentr.c:1409:14: warning: variable 'actual' set but not used [-Wunused-but-set-variable] rm -f libncbiCacc.a ar cru libncbiCacc.a Caccentr.o accutils.o cp -p libncbiCacc.a ../lib ranlib ../lib/libncbiCacc.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netcnfg.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" trmlst.c trmlst.c: In function 'FetchFromTermList': trmlst.c:1048:16: warning: variable 'numRead' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" docsum.c docsum.c: In function 'ImportDocSumForm': docsum.c:2298:21: warning: unused variable 'sephead' [-Wunused-variable] docsum.c:2296:21: warning: unused variable 'is_na' [-Wunused-variable] docsum.c:2290:21: warning: unused variable 'choice' [-Wunused-variable] docsum.c: In function 'SaveDocsumProject': docsum.c:3042:16: warning: variable 'sfp' set but not used [-Wunused-but-set-variable] docsum.c: At top level: docsum.c:439:15: warning: 'checkmark' defined but not used [-Wunused-variable] docsum.c: In function 'LaunchStructureViewer': docsum.c:4192:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] docsum.c: In function 'FetchLocalBioseq': docsum.c:1223:6: warning: 'str' may be used uninitialized in this function [-Wuninitialized] rm -f libvibnet.a ar cru libvibnet.a netcnfg.o trmlst.o docsum.o cp -p libvibnet.a ../lib ranlib ../lib/libvibnet.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objtax1.c objtax1.c: In function 'Taxon1ReqFree': objtax1.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objtax1.c: In function 'Taxon1ReqAsnRead': objtax1.c:96:12: warning: unused variable 'isError' [-Wunused-variable] objtax1.c: In function 'Taxon1InfoAsnRead': objtax1.c:467:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax1.c:466:12: warning: unused variable 'isError' [-Wunused-variable] objtax1.c: In function 'Taxon1ErrorAsnRead': objtax1.c:1067:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax1.c:1066:12: warning: unused variable 'isError' [-Wunused-variable] objtax1.c: In function 'Taxon1NameAsnRead': objtax1.c:1232:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax1.c:1231:12: warning: unused variable 'isError' [-Wunused-variable] objtax1.c: In function 'Taxon1DataAsnRead': objtax1.c:1418:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax1.c:1417:12: warning: unused variable 'isError' [-Wunused-variable] objtax1.c: In function 'Taxon2DataAsnRead': objtax1.c:1606:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objtax1.c: In function 'Taxon1ReqAsnRead': objtax1.c:265:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objtax1.c: In function 'Taxon1RespAsnRead': objtax1.c:868:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxutil.c taxutil.c: In function 'taxname_match': taxutil.c:66:24: warning: unused variable 'taxstr' [-Wunused-variable] taxutil.c: In function 'get_lineage': taxutil.c:140:28: warning: 'onp' may be used uninitialized in this function [-Wuninitialized] taxutil.c: In function 'get_gcode': taxutil.c:160:23: warning: 'onp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o tc2dproc.o -DTAXSERVICE tc2proc.c tc2proc.c: In function 'getIdByOrgRef': tc2proc.c:407:17: warning: unused variable 'om_flag' [-Wunused-variable] tc2proc.c: In function 'bldLineage': tc2proc.c:1095:10: warning: unused variable 'rank' [-Wunused-variable] tc2proc.c: In function 'storedTaxId': tc2proc.c:2114:17: warning: unused variable 'object_id' [-Wunused-variable] tc2proc.c: In function 'tax1e_needUpdate': tc2proc.c:2181:13: warning: unused variable 'hit_name' [-Wunused-variable] tc2proc.c:2180:13: warning: unused variable 'need_search_name' [-Wunused-variable] tc2proc.c:2179:9: warning: unused variable 'is_species' [-Wunused-variable] tc2proc.c:2176:19: warning: unused variable 'res' [-Wunused-variable] tc2proc.c: At top level: tc2proc.c:403:13: warning: 'getIdByOrgRef' defined but not used [-Wunused-function] tc2proc.c: In function 'mergeOrgMod': tc2proc.c:1619:22: warning: 'lst' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o txcdproc.o -DTAXSERVICE txcdproc.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" parttree.c parttree.c: In function 'tax_ptree_addSubtree': parttree.c:392:13: warning: unused variable 'need_remove' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxcs.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxblast.c taxblast.c: In function 'TXBHtmlReportInternal': taxblast.c:1294:37: warning: variable 'linlines' set but not used [-Wunused-but-set-variable] taxblast.c: At top level: taxblast.c:1902:13: warning: 'getTotalTaxIdCount' defined but not used [-Wunused-function] taxblast.c: In function 'RDTaxLookupReset': taxblast.c:1985:1: warning: control reaches end of non-void function [-Wreturn-type] taxblast.c: In function 'TXBGetTargetGi.isra.2': taxblast.c:501:5: warning: 'gi' may be used uninitialized in this function [-Wuninitialized] rm -f libncbitxc2.a ar cru libncbitxc2.a objtax1.o taxutil.o tc2dproc.o txcdproc.o parttree.o taxcs.o taxblast.o cp -p libncbitxc2.a ../lib ranlib ../lib/libncbitxc2.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1gen.c id1gen.c: In function 'ID1serverRequestFree': id1gen.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] id1gen.c: In function 'ID1serverRequestAsnRead': id1gen.c:90:12: warning: unused variable 'isError' [-Wunused-variable] id1gen.c: In function 'ID1serverMaxcomplexAsnRead': id1gen.c:348:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] id1gen.c:347:12: warning: unused variable 'isError' [-Wunused-variable] id1gen.c: In function 'ID1SeqHistAsnRead': id1gen.c:530:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] id1gen.c:529:12: warning: unused variable 'isError' [-Wunused-variable] id1gen.c: In function 'ID1SeqEntryInfoAsnRead': id1gen.c:979:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] id1gen.c:978:12: warning: unused variable 'isError' [-Wunused-variable] id1gen.c: In function 'ID1blobInfoAsnRead': id1gen.c:1147:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] id1gen.c:1146:12: warning: unused variable 'isError' [-Wunused-variable] id1gen.c: In function 'ID1serverDebugAsnRead': id1gen.c:1368:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] id1gen.c: In function 'ID1serverBackAsnRead': id1gen.c:811:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] id1gen.c: In function 'ID1serverRequestAsnRead': id1gen.c:186:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1arch.c id1arch.c: In function 'ID1ArchSeqEntryGet': id1arch.c:173:7: warning: unused variable 'retval' [-Wunused-variable] id1arch.c: In function 'ID1ArchGIGet': id1arch.c:486:10: warning: unused variable 'retval' [-Wunused-variable] id1arch.c: In function 'SeqHistPrintTable': id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat] id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat] id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat] id1arch.c:563:25: warning: spurious trailing '%' in format [-Wformat] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" accid1.c accid1.c: In function 's_ID1BioseqFetchFunc': accid1.c:262:9: warning: unused variable 'retcode' [-Wunused-variable] rm -f libncbiid1.a ar cru libncbiid1.a id1gen.o id1arch.o accid1.o cp -p libncbiid1.a ../lib ranlib ../lib/libncbiid1.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objblst3.c objblst3.c: In function 'BlastSearchAsnRead': objblst3.c:91:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:90:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastRequestFree': objblst3.c:287:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastRequestAsnRead': objblst3.c:337:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'Cutoff2_cutoff2Free': objblst3.c:999:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastParametersAsnRead': objblst3.c:1027:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'Cutoff2_cutoff2AsnRead': objblst3.c:1422:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'Cutoff_cutoffAsnRead': objblst3.c:1788:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'Cutoff_cutoffFree': objblst3.c:1871:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastMatrixAsnRead': objblst3.c:1936:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastDbinfoAsnRead': objblst3.c:2153:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:2152:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastMaskAsnRead': objblst3.c:2357:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastKABlkAsnRead': objblst3.c:2517:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:2516:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastErrorAsnRead': objblst3.c:2697:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:2696:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastPhialignAsnRead': objblst3.c:2861:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastDbinfoGetAsnRead': objblst3.c:3022:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:3021:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastSeqIdAsnRead': objblst3.c:3187:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:3186:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastSequenceAsnRead': objblst3.c:3364:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:3363:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastPartsAsnRead': objblst3.c:3532:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastQueuedAsnRead': objblst3.c:3694:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:3693:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastProgressAsnRead': objblst3.c:3846:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:3845:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastDeflineAsnRead': objblst3.c:4000:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:3999:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'BlastVersionAsnRead': objblst3.c:4168:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:4167:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'MegaBlastHitAsnRead': objblst3.c:4335:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c:4334:12: warning: unused variable 'isError' [-Wunused-variable] objblst3.c: In function 'MegaBlastResultsAsnRead': objblst3.c:4546:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objblst3.c: In function 'BlastRequestAsnRead': objblst3.c:430:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objblst3.c: In function 'BlastResponseAsnRead': objblst3.c:791:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objblst3.c: In function 'BlastParametersAsnRead': objblst3.c:1474:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objblst3.c:1421:10: note: 'choice' was declared here objblst3.c:1840:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objblst3.c:1787:10: note: 'choice' was declared here gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netblap3.c netblap3.c: In function 'BlastNetBioseqFetchFunc': netblap3.c:1835:16: warning: variable 'omdp' set but not used [-Wunused-but-set-variable] netblap3.c: In function 'MegaBlastSeqLocNetCore': netblap3.c:2049:8: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] netblap3.c: At top level: ../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable] ../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function] netblap3.c:430:1: warning: 'BlastSetErrorHook' defined but not used [-Wunused-function] netblap3.c:438:1: warning: 'BlastSetErrorStatus' defined but not used [-Wunused-function] netblap3.c:445:1: warning: 'BlastGetErrorStatus' defined but not used [-Wunused-function] netblap3.c:452:1: warning: 'BlastResetOldHook' defined but not used [-Wunused-function] netblap3.c: In function 'BlastNetMatrixToBlastMatrix': netblap3.c:1212:35: warning: 'index2' may be used uninitialized in this function [-Wuninitialized] netblap3.c: In function 'SubmitRequest': netblap3.c:1763:18: warning: 'bllist' may be used uninitialized in this function [-Wuninitialized] netblap3.c:1698:19: note: 'bllist' was declared here netblap3.c: In function 'TraditionalBlastReportEngine': netblap3.c:2570:11: warning: 'next_seqalign' may be used uninitialized in this function [-Wuninitialized] netblap3.c:2576:21: warning: 'sap' may be used uninitialized in this function [-Wuninitialized] rm -f libnetblast.a ar cru libnetblast.a objblst3.o netblap3.o cp -p libnetblast.a ../lib ranlib ../lib/libnetblast.a gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -DNLM_OBJ_INCL=\"mapmla.h\" objmla.c objmla.c: In function 'MlaRequestFree': objmla.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] objmla.c: In function 'MlaRequestAsnRead': objmla.c:96:12: warning: unused variable 'isError' [-Wunused-variable] objmla.c: In function 'TitleMsgAsnRead': objmla.c:447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmla.c:446:12: warning: unused variable 'isError' [-Wunused-variable] objmla.c: In function 'TitleMsgListAsnRead': objmla.c:612:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] objmla.c: In function 'MlaRequestAsnRead': objmla.c:249:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] objmla.c: In function 'MlaBackAsnRead': objmla.c:902:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medarch.c medarch.c:710:8: warning: 's_MedArchPubSetEntryGetPmId' defined but not used [-Wunused-function] medarch.c:758:8: warning: 's_MedArchPubSetEntryGetUid' defined but not used [-Wunused-function] medarch.c: In function 'MedArchPubSetCreate': medarch.c:1693:30: warning: 'pubSetEAtp' may be used uninitialized in this function [-Wuninitialized] medarch.c:1697:5: warning: 'pubSetAtp' may be used uninitialized in this function [-Wuninitialized] medarch.c:1655:14: warning: 'startAtp' may be used uninitialized in this function [-Wuninitialized] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medutil.c rm -f libncbimla.a ar cru libncbimla.a objmla.o medarch.o medutil.o cp -p libncbimla.a ../lib ranlib ../lib/libncbimla.a gcc -o Psequin -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF -UINTERNAL_NCBI_SEQUIN sequin1.c sequin2.c sequin3.c sequin4.c sequin5.c sequin6.c sequin7.c sequin8.c sequin9.c sequin10.c sequinx.c \ -lvibnet -lncbidesk -lblastapi -lnetblast -lncbitool -lncbimla \ -lvibrant -lncbiobj -lncbi sequin1.c: In function 'ReportBadTaxID': sequin1.c:2486:5: warning: zero-length gnu_printf format string [-Wformat-zero-length] sequin1.c:2495:5: warning: zero-length gnu_printf format string [-Wformat-zero-length] sequin1.c: In function 'ClickIdMatchDoc': sequin1.c:4200:19: warning: unused variable 'dblclick' [-Wunused-variable] sequin1.c: In function 'ResolveIDLists': sequin1.c:4294:14: warning: unused variable 'ids_in_record' [-Wunused-variable] sequin1.c: In function 'SQACT_GuessWhatIAm': sequin1.c:4637:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] sequin1.c: In function 'FinishAlignmentRead': sequin1.c:4949:16: warning: variable 'rsult' set but not used [-Wunused-but-set-variable] sequin1.c: In function 'DeleteSelectedFeatureOrDescriptor': sequin1.c:9222:19: warning: variable 'itemtype' set but not used [-Wunused-but-set-variable] sequin1.c:9221:19: warning: variable 'itemID' set but not used [-Wunused-but-set-variable] sequin1.c:9219:19: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] sequin1.c: In function 'WizardTrackerFree': sequin1.c:15094:20: warning: variable 'sep_next' set but not used [-Wunused-but-set-variable] sequin1.c: In function 'AddCodingRegionFromWizard': sequin1.c:15152:33: warning: variable 'nsep' set but not used [-Wunused-but-set-variable] sequin1.c: In function 'SetWizardTrackerBaseSrcQuals': sequin1.c:15410:7: warning: enumeration value 'eVirusClass_Unknown' not handled in switch [-Wswitch] sequin1.c:15454:7: warning: enumeration value 'eCulturedKingdom_Unknown' not handled in switch [-Wswitch] sequin1.c: In function 'SetWizardTrackerExtraSrcQuals': sequin1.c:15520:7: warning: enumeration value 'eVirusClass_Unknown' not handled in switch [-Wswitch] sequin1.c:15547:7: warning: enumeration value 'eCulturedKingdom_Unknown' not handled in switch [-Wswitch] sequin1.c: In function 'AddWizardFeatureCallback': sequin1.c:15676:3: warning: enumeration value 'eVirusFeat_None' not handled in switch [-Wswitch] sequin1.c:15676:3: warning: enumeration value 'eVirusFeat_CDS' not handled in switch [-Wswitch] sequin1.c: In function 'HaveOneWizardSrcQualOrTheOtherEx': sequin1.c:18706:30: warning: unused variable 'all_second' [-Wunused-variable] sequin1.c:18706:11: warning: unused variable 'all_first' [-Wunused-variable] sequin1.c: In function 'VirusQualsOk': sequin1.c:18814:5: warning: enumeration value 'eVirusClass_Unknown' not handled in switch [-Wswitch] sequin1.c: In function 'CulturedSamplesOk': sequin1.c:18900:5: warning: enumeration value 'eCulturedKingdom_Unknown' not handled in switch [-Wswitch] sequin1.c: In function 'WizardMolInfoOk': sequin1.c:19843:11: warning: unused variable 'rval' [-Wunused-variable] sequin1.c: In function 'WizardMolInfoExtraOk': sequin1.c:19961:11: warning: unused variable 'rval' [-Wunused-variable] sequin1.c: In function 'HaveWizardSourceType': sequin1.c:20516:3: warning: enumeration value 'eWizardType_UnculturedSamples' not handled in switch [-Wswitch] sequin1.c: In function 'WizardSourceTypeForm': sequin1.c:20563:3: warning: enumeration value 'eWizardType_UnculturedSamples' not handled in switch [-Wswitch] sequin1.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable] ../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] sequin1.c:373:13: warning: 'SetSequinAppParamTF' defined but not used [-Wunused-function] sequin1.c:576:13: warning: 'ReplaceString' defined but not used [-Wunused-function] sequin1.c:2199:13: warning: 'StyleManagerProc' defined but not used [-Wunused-function] sequin1.c:7411:16: warning: 'LookupJournalFuncNew' defined but not used [-Wunused-function] sequin1.c:7995:13: warning: 'FindAlu' defined but not used [-Wunused-function] sequin1.c:8221:13: warning: 'DefaultMessageProc' defined but not used [-Wunused-function] sequin1.c:8234:13: warning: 'PreferencesProc' defined but not used [-Wunused-function] sequin1.c:9369:13: warning: 'TermSelectionFormMessage' defined but not used [-Wunused-function] sequin1.c:9389:13: warning: 'DocumentSummaryFormMessage' defined but not used [-Wunused-function] sequin1.c:11138:13: warning: 'ObjMgrReport' defined but not used [-Wunused-function] sequin1.c:16034:16: warning: 'DoAllSequencesHaveSameModifierValue' defined but not used [-Wunused-function] sequin1.c:16097:13: warning: 'SeqEntryToModTabTable' defined but not used [-Wunused-function] sequin1.c:16132:13: warning: 'ModTableToSeqEntryList' defined but not used [-Wunused-function] sequin1.c:16164:13: warning: 'ClearModifierValues' defined but not used [-Wunused-function] sequin1.c:20642:16: warning: 'WizardCommentForm' defined but not used [-Wunused-function] sequin1.c:16836:16: warning: 'JumpToMainSubmission' defined but not used [-Wunused-function] sequin1.c:16928:13: warning: 'GroupChoiceFromName' defined but not used [-Wunused-function] sequin1.c:19438:13: warning: 'CleanupWizardSrcQualsForm' defined but not used [-Wunused-function] sequin1.c: In function 'LaunchedGoogleEarth': sequin1.c:1440:18: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] sequin1.c: In function 'Entrez2QueryProc': sequin1.c:10039:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] sequin1.c: In function 'SubtoolDoneFuncEx': sequin1.c:1929:35: warning: 'bfp' may be used uninitialized in this function [-Wuninitialized] sequin1.c: In function 'BioseqViewFormMenus': sequin1.c:8831:23: warning: 'mssgupd_idx' may be used uninitialized in this function [-Wuninitialized] sequin2.c: In function 'ValidateModifierTableSequenceIDs': sequin2.c:2812:16: warning: variable 'deleted_rows' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'ImportSequencesFromFileEx': sequin2.c:4581:32: warning: unused variable 'isOnlyFASTA' [-Wunused-variable] sequin2.c:4571:17: warning: variable 'count' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'ImportFastaDialog': sequin2.c:5005:17: warning: variable 'sep' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'ExportOneRawSequence': sequin2.c:5266:15: warning: variable 'buffer' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'ExportOneDeltaBioseq': sequin2.c:5365:15: warning: variable 'buffer' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'FindBioseqWithValue': sequin2.c:8315:17: warning: variable 'bsp' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'CollectNucleotideProteinAssociations': sequin2.c:9684:73: warning: variable 'p_msg' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'GetModNameStartFromEqLoc': sequin2.c:12140:11: warning: variable 'match_quote' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'GetValueFromTitle': sequin2.c:12704:15: warning: variable 'is_nontext' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'PrepareSourceAssistantTableData': sequin2.c:13878:36: warning: variable 'num_columns' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'SetOrganismText': sequin2.c:14080:30: warning: variable 'changed_val' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'ApplyRowListToIDAndTitleEdit': sequin2.c:15727:32: warning: variable 'next_org' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'EditOrgModColumn': sequin2.c:16638:26: warning: variable 'row_list' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'ApplyOrgModColumn': sequin2.c:17487:11: warning: variable 'is_nontext' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'PrepareSequenceAssistantTableData': sequin2.c:18461:36: warning: variable 'num_columns' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'UpdateIdAndTitleEditDialog': sequin2.c:19879:50: warning: variable 'has_space' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'SetIDAndTitleEditDialogErrorColumn': sequin2.c:20029:74: warning: variable 'has_space' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'GetDiffDlgCoord': sequin2.c:21199:19: warning: variable 'start_col' set but not used [-Wunused-but-set-variable] sequin2.c:21199:8: warning: variable 'start_row' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'DownloadAndDisplay': sequin2.c:26866:17: warning: variable 'dbname' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'DownloadProc': sequin2.c:27047:17: warning: variable 'dbname' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'LoadSecondaryAccessionNumbersPlusHistFromFile': sequin2.c:28335:17: warning: variable 'need_seqid' set but not used [-Wunused-but-set-variable] sequin2.c: In function 'RemoveEmptyGenomeProjectIDCallback': sequin2.c:28475:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses] sequin2.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] sequin2.c:8616:20: warning: 'FindSeqEntryWithTranscriptID' defined but not used [-Wunused-function] sequin2.c:11159:17: warning: 'GetSeqIdFromSeqEntryPtr' defined but not used [-Wunused-function] sequin2.c:25273:1: warning: 'SequenceAssistantValidateSegments' defined but not used [-Wunused-function] sequin2.c:26461:13: warning: 'GetRawBsps' defined but not used [-Wunused-function] sequin2.c: In function 'SeqEntryPtrToOrgDoc': sequin2.c:13372:26: warning: 'row_status' may be used uninitialized in this function [-Wuninitialized] sequin2.c:13262:14: note: 'row_status' was declared here sequin2.c: In function 'InsertMostUsedFeatureValNodes': sequin2.c:28605:22: warning: 'new_item' may be used uninitialized in this function [-Wuninitialized] sequin3.c: In function 'FarToNearProc': sequin3.c:908:12: warning: variable 'olddelta' set but not used [-Wunused-but-set-variable] sequin3.c: In function 'FixLocus': sequin3.c:1403:15: warning: variable 'embl_code' set but not used [-Wunused-but-set-variable] sequin3.c: In function 'RemoveGeneXrefsOnBioseqs': sequin3.c:2647:22: warning: variable 'count' set but not used [-Wunused-but-set-variable] sequin3.c: In function 'MakeCDS': sequin3.c:6894:27: warning: variable 'nsep' set but not used [-Wunused-but-set-variable] sequin3.c: In function 'ConvertOneCDSToMiscFeat': sequin3.c:9110:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] sequin3.c: In function 'SuppressGenesOnFeatures': sequin3.c:10893:20: warning: variable 'b' set but not used [-Wunused-but-set-variable] sequin3.c: In function 'CheckForExistingMolInfo': sequin3.c:12566:17: warning: variable 'bsp' set but not used [-Wunused-but-set-variable] sequin3.c: In function 'UniqueAndCountValNodeCS': sequin3.c:13527:17: warning: variable 'curr' set but not used [-Wunused-but-set-variable] sequin3.c: In function 'RemoveNthCDS': sequin3.c:21447:17: warning: variable 'segCount' set but not used [-Wunused-but-set-variable] sequin3.c: In function 'InstantiateGapFeatCallback': sequin3.c:22673:15: warning: variable 'fuzz' set but not used [-Wunused-but-set-variable] sequin3.c: In function 'RunAutoFixWindowScript': sequin3.c:23934:32: warning: unused variable 'num_features' [-Wunused-variable] sequin3.c:23934:16: warning: unused variable 'num_fields' [-Wunused-variable] sequin3.c: At top level: ../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] sequin3.c:2381:13: warning: 'JustTaxonFixup' defined but not used [-Wunused-function] sequin3.c:2538:13: warning: 'NewRemoveDuplicateFeatsGenes' defined but not used [-Wunused-function] sequin3.c:4329:13: warning: 'CorrectAlignmentsAfterNToGapConversion' defined but not used [-Wunused-function] sequin3.c:4361:13: warning: 'RawSeqToDeltaSeq' defined but not used [-Wunused-function] sequin3.c:4375:13: warning: 'RawSeqToDeltaSeqUnknownLengthGaps' defined but not used [-Wunused-function] sequin3.c:4392:13: warning: 'RawSeqToDeltaSeqUnknown100LengthGaps' defined but not used [-Wunused-function] sequin3.c:5977:13: warning: 'EnableFeatureToGeneControlsPopup' defined but not used [-Wunused-function] sequin3.c:5985:13: warning: 'EnableFeatureToGeneControlsText' defined but not used [-Wunused-function] sequin3.c:8067:13: warning: 'MultiTransformProc' defined but not used [-Wunused-function] sequin3.c:12294:13: warning: 'NewMolInfoFieldsApply' defined but not used [-Wunused-function] sequin3.c:12350:13: warning: 'RibosomalRNAToGenomicDNAMenuItem' defined but not used [-Wunused-function] sequin3.c:14315:13: warning: 'PrepareTaxListProc' defined but not used [-Wunused-function] sequin3.c:17270:13: warning: 'DoGeneReset' defined but not used [-Wunused-function] sequin3.c:17744:1: warning: 'TruncProtsAtStopsExEx' defined but not used [-Wunused-function] sequin3.c:22820:13: warning: 'AddAllDbxrefsMenuItem' defined but not used [-Wunused-function] sequin3.c:22865:13: warning: 'NewAligmentViewer' defined but not used [-Wunused-function] sequin3.c:22998:13: warning: 'TestTax3A' defined but not used [-Wunused-function] sequin3.c:23004:13: warning: 'TestTax3B' defined but not used [-Wunused-function] sequin3.c:23340:13: warning: 'ModernizePCRs' defined but not used [-Wunused-function] sequin3.c:23367:13: warning: 'ModernizeRNAs' defined but not used [-Wunused-function] sequin3.c:23394:13: warning: 'ModernizeGenes' defined but not used [-Wunused-function] sequin3.c:23821:13: warning: 'WriteAccessionsCallback' defined but not used [-Wunused-function] sequin3.c:23832:16: warning: 'labelfungalrnascmd' defined but not used [-Wunused-variable] sequin4.c: In function 'SplitSegmentedFeatsOnOneSet': sequin4.c:1697:20: warning: variable 'set_sep' set but not used [-Wunused-but-set-variable] sequin4.c: In function 'RemoveOneSegSet': sequin4.c:2368:30: warning: variable 'seg_bssp' set but not used [-Wunused-but-set-variable] sequin4.c: In function 'NewUpdateSeqAlign': sequin4.c:3951:20: warning: variable 'bssp' set but not used [-Wunused-but-set-variable] sequin4.c: In function 'ImportAlignmentForSeqHistInterval': sequin4.c:4146:21: warning: unused variable 'bssp' [-Wunused-variable] sequin4.c:4133:21: warning: unused variable 'salp' [-Wunused-variable] sequin4.c: In function 'GenerateSeqAlignFromSeqEntryMasterOption': sequin4.c:5833:21: warning: unused variable 'bsp' [-Wunused-variable] sequin4.c: In function 'LaunchOrfViewer': sequin4.c:8214:9: warning: variable 'qu' set but not used [-Wunused-but-set-variable] sequin4.c: In function 'MRnaFromCdsCallback': sequin4.c:9112:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] sequin4.c: In function 'FindNonACGT': sequin4.c:10820:21: warning: variable 'len' set but not used [-Wunused-but-set-variable] sequin4.c: In function 'ConsolidateOrganismNotesProc': sequin4.c:12578:21: warning: variable 'note_mod' set but not used [-Wunused-but-set-variable] sequin4.c:12577:21: warning: variable 'note_ssp' set but not used [-Wunused-but-set-variable] sequin4.c: In function 'GetPubStatus': sequin4.c:14407:14: warning: variable 'csp' set but not used [-Wunused-but-set-variable] sequin4.c: In function 'ReadAlignmentForSeqEntry': sequin4.c:17833:21: warning: unused variable 'dirty' [-Wunused-variable] sequin4.c:17829:21: warning: unused variable 'salp' [-Wunused-variable] sequin4.c: In function 'FindFrameShiftsInAlignment': sequin4.c:18839:15: warning: unused variable 'exon_list' [-Wunused-variable] sequin4.c: At top level: ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] sequin4.c:17457:25: warning: 'FeatToDeltaSeq' defined but not used [-Wunused-function] sequin4.c:4046:18: warning: 'FindBioseqForSeqHist' defined but not used [-Wunused-function] sequin4.c:7705:13: warning: 'AddOrfListToDoc' defined but not used [-Wunused-function] sequin4.c:13495:13: warning: 'PubConstraintClearText' defined but not used [-Wunused-function] sequin4.c:18064:13: warning: 'CleanupTruncateByProtAlignForm' defined but not used [-Wunused-function] sequin4.c: In function 'ExplodeGroup.isra.109': sequin4.c:6466:28: warning: 'nucbsp' may be used uninitialized in this function [-Wuninitialized] sequin4.c: In function 'GroupExplodeFunc': sequin4.c:6545:18: warning: 'lastEsp' may be used uninitialized in this function [-Wuninitialized] sequin4.c: In function 'SplitSegmentedFeats.isra.110': sequin4.c:1705:27: warning: 'new_frame' may be used uninitialized in this function [-Wuninitialized] sequin5.c: In function 'GeneExtendFunc': sequin5.c:257:18: warning: variable 'grp' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'RemoveGBIDsProc': sequin5.c:1557:18: warning: variable 'nextid' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'RemoveGBProtIDsProc': sequin5.c:1607:18: warning: variable 'nextid' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'RemoveGIProc': sequin5.c:1658:18: warning: variable 'nextid' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'RemoveInference': sequin5.c:5937:17: warning: variable 'avp' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'SetmRNAFieldString': sequin5.c:7225:17: warning: variable 'field_choice' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'GetCDSGeneProtField': sequin5.c:7910:11: warning: variable 'field_choice' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'GetRNAFieldString': sequin5.c:8359:21: warning: variable 'field_choice' set but not used [-Wunused-but-set-variable] sequin5.c:8353:14: warning: variable 'rrp' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'SetRNAFieldString': sequin5.c:8594:17: warning: variable 'rrp' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'BioseqConstrainedFeaturesCallback': sequin5.c:12183:21: warning: variable 'cop' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'SampleDialogCopy': sequin5.c:14435:53: warning: variable 'last_col' set but not used [-Wunused-but-set-variable] sequin5.c:14435:42: warning: variable 'first_col' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'TestFeatureFieldChoice': sequin5.c:14956:31: warning: variable 'dlg' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'GetImpFeatureToCDSConversionValues': sequin5.c:17529:30: warning: variable 'featcomment' set but not used [-Wunused-but-set-variable] sequin5.c:17529:20: warning: variable 'protName' set but not used [-Wunused-but-set-variable] sequin5.c:17529:10: warning: variable 'geneName' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'CreateClickableListForSourceFeats': sequin5.c:17772:27: warning: variable 'insertion_seq_txt' set but not used [-Wunused-but-set-variable] sequin5.c:17772:11: warning: variable 'transposon_txt' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'CDSToMiscFeatConvertFunc': sequin5.c:17964:24: warning: variable 'rval' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'GetRegionOpts': sequin5.c:18102:25: warning: unused variable 'rval' [-Wunused-variable] sequin5.c: In function 'NewConvertFeaturesByList': sequin5.c:18272:14: warning: unused variable 'only_pseudo' [-Wunused-variable] sequin5.c: In function 'FeatureRemoveOrConvertAction': sequin5.c:18611:25: warning: variable 'sfp' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'CDSGeneProtAECRDialog': sequin5.c:21866:25: warning: variable 'sep' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'CDSGeneProtConvert': sequin5.c:22246:18: warning: unused variable 'str_dst' [-Wunused-variable] sequin5.c: In function 'CDSGeneProtParse': sequin5.c:22456:18: warning: variable 'avd' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'RNAQualListDialog': sequin5.c:24932:22: warning: variable 'sep' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'GetRNAFeatureList': sequin5.c:25121:14: warning: variable 'matches' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'RNAQualConvertSwapParseList': sequin5.c:25253:26: warning: variable 'avd' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'RNAQualEditRemoveList': sequin5.c:25349:20: warning: unused variable 'rval' [-Wunused-variable] sequin5.c: In function 'GetGBQualName': sequin5.c:26058:8: warning: variable 'field_choice' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'GetGBQualSampleName': sequin5.c:26077:14: warning: variable 'num_feature_choices' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'ConvertGeneLocusTagToOldLocusTagCallback': sequin5.c:26432:28: warning: variable 'mp' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'NewSegregateBioseqSet': sequin5.c:29623:22: warning: variable 'p' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'CompareBulkRows': sequin5.c:31114:8: warning: variable 'col' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'MakeBulkEditorFieldListDialog': sequin5.c:31669:3: warning: implicit declaration of function 'InitValNodeBlock' [-Wimplicit-function-declaration] sequin5.c:31673:7: warning: implicit declaration of function 'ValNodeAddPointerToEnd' [-Wimplicit-function-declaration] sequin5.c: In function 'UpdateBulkEdDisplay': sequin5.c:32372:17: warning: unused variable 'text_len' [-Wunused-variable] sequin5.c: In function 'AddColumnToRowList': sequin5.c:33105:11: warning: unused variable 'm' [-Wunused-variable] sequin5.c: In function 'ApplyBulkEditCommon': sequin5.c:33530:23: warning: unused variable 'need_redraw' [-Wunused-variable] sequin5.c: In function 'CopyAllFieldsFromList': sequin5.c:33885:8: warning: unused variable 'num_full' [-Wunused-variable] sequin5.c: In function 'BulkEditorObjectList': sequin5.c:35479:22: warning: unused variable 'subtype' [-Wunused-variable] sequin5.c: In function 'BulkEditor': sequin5.c:35537:22: warning: variable 'field_list' set but not used [-Wunused-but-set-variable] sequin5.c: In function 'GetSpecificHostCorrectionCategory': sequin5.c:36272:22: warning: unused variable 'fmt' [-Wunused-variable] sequin5.c: At top level: ../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable] ../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable] ../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function] sequin5.c:2010:13: warning: 'MoveProteinAnnots' defined but not used [-Wunused-function] sequin5.c:2888:16: warning: 'DoModNamesMatch' defined but not used [-Wunused-function] sequin5.c:2946:16: warning: 'GetValueNameFromEnum' defined but not used [-Wunused-function] sequin5.c:5934:13: warning: 'RemoveInference' defined but not used [-Wunused-function] sequin5.c:6212:13: warning: 'RemoveFeatureNote' defined but not used [-Wunused-function] sequin5.c:8966:13: warning: 'SetExonFieldString' defined but not used [-Wunused-function] sequin5.c:10599:19: warning: 'CDSGeneProtValNodeDataCopy' defined but not used [-Wunused-function] sequin5.c:11773:16: warning: 'DoesDbtagMatchStringConstraint' defined but not used [-Wunused-function] sequin5.c:13686:25: warning: 'ParseFieldSrcFree' defined but not used [-Wunused-function] sequin5.c:15078:13: warning: 'ResetParseActionVisitData' defined but not used [-Wunused-function] sequin5.c:16946:1: warning: 'FindParseActionPairList' defined but not used [-Wunused-function] sequin5.c:17525:13: warning: 'GetImpFeatureToCDSConversionValues' defined but not used [-Wunused-function] sequin5.c:17845:16: warning: 'AllFeaturesArePseudo' defined but not used [-Wunused-function] sequin5.c:17861:16: warning: 'AnyFeaturesArePseudo' defined but not used [-Wunused-function] sequin5.c:18527:16: warning: 'GetNucOrProtChoiceForConversion' defined but not used [-Wunused-function] sequin5.c:20095:19: warning: 'BuildCDSetList' defined but not used [-Wunused-function] sequin5.c:20704:13: warning: 'ApplyEditConvertRemoveTextChange' defined but not used [-Wunused-function] sequin5.c:21974:16: warning: 'AreFilterAndFieldBothForMatPeptide' defined but not used [-Wunused-function] sequin5.c:24616:23: warning: 'AECRRNAQualFree' defined but not used [-Wunused-function] sequin5.c:26056:16: warning: 'GetGBQualName' defined but not used [-Wunused-function] sequin5.c:26301:15: warning: 'AllActionsAllTargetsDialog' defined but not used [-Wunused-function] sequin5.c:26904:1: warning: 'CreateProteinLoc' defined but not used [-Wunused-function] sequin5.c:30750:13: warning: 'FreeBulkEditorValuesList' defined but not used [-Wunused-function] sequin5.c:30799:25: warning: 'CopyBulkEditorRows' defined but not used [-Wunused-function] sequin5.c:31629:13: warning: 'GetPopupValueFromFieldNum' defined but not used [-Wunused-function] sequin5.c:31719:28: warning: 'OneFieldBulkEditNew' defined but not used [-Wunused-function] sequin5.c:31972:28: warning: 'TwoFieldBulkEditNew' defined but not used [-Wunused-function] sequin5.c:34192:15: warning: 'BulkNucLocationDialog' defined but not used [-Wunused-function] sequin5.c:34356:16: warning: 'BulkReleaseTrueFalse' defined but not used [-Wunused-function] sequin5.c:34367:13: warning: 'BulkSetPseudo' defined but not used [-Wunused-function] sequin5.c:34378:16: warning: 'BulkGetPseudo' defined but not used [-Wunused-function] sequin5.c:34843:23: warning: 'GetBulkEditorFieldListForFeature' defined but not used [-Wunused-function] sequin5.c:35103:1: warning: 'BulkSrcGetEnvironmental_sample' defined but not used [-Wunused-function] sequin5.c:35103:1: warning: 'BulkSrcSetEnvironmental_sample' defined but not used [-Wunused-function] sequin5.c:35106:1: warning: 'BulkSrcGetGermline' defined but not used [-Wunused-function] sequin5.c:35106:1: warning: 'BulkSrcSetGermline' defined but not used [-Wunused-function] sequin5.c:35116:1: warning: 'BulkSrcGetMetagenomic' defined but not used [-Wunused-function] sequin5.c:35116:1: warning: 'BulkSrcSetMetagenomic' defined but not used [-Wunused-function] sequin5.c:35119:1: warning: 'BulkSrcGetRearranged' defined but not used [-Wunused-function] sequin5.c:35119:1: warning: 'BulkSrcSetRearranged' defined but not used [-Wunused-function] sequin5.c:35125:1: warning: 'BulkSrcGetTransgenic' defined but not used [-Wunused-function] sequin5.c:35125:1: warning: 'BulkSrcSetTransgenic' defined but not used [-Wunused-function] sequin5.c: In function 'ConvertDescriptorFieldCallback': sequin5.c:6461:18: warning: 'dst_text' may be used uninitialized in this function [-Wuninitialized] sequin5.c: In function 'ApplyEditConvertRemoveCombo.constprop.183': sequin5.c:20959:18: warning: 'm' may be used uninitialized in this function [-Wuninitialized] sequin6.c: In function 'CleanupDeleteByTextConvertForm': sequin6.c:1489:19: warning: variable 'cfp' set but not used [-Wunused-but-set-variable] sequin6.c: In function 'RemoveOrgModText': sequin6.c:3680:35: warning: variable 'next_mod' set but not used [-Wunused-but-set-variable] sequin6.c: In function 'GapLocationsFromNs': sequin6.c:5229:15: warning: variable 'seq_ext' set but not used [-Wunused-but-set-variable] sequin6.c:5228:15: warning: variable 'len' set but not used [-Wunused-but-set-variable] sequin6.c: In function 'ApplyBioFeatToList': sequin6.c:6668:23: warning: variable 'oldscope' set but not used [-Wunused-but-set-variable] sequin6.c: In function 'CopyContactToAuthors': sequin6.c:8456:16: warning: unused variable 'list' [-Wunused-variable] sequin6.c: In function 'AddCommentsToList': sequin6.c:13579:22: warning: unused variable 'comment_len' [-Wunused-variable] sequin6.c: At top level: sequin6.c:13678:14: warning: type defaults to 'int' in declaration of 'k_num_RNA_words' [-Wimplicit-int] sequin6.c: In function 'RNAWordsFromString': sequin6.c:13687:32: warning: variable 'last_pos' set but not used [-Wunused-but-set-variable] sequin6.c:13687:15: warning: variable 'last_hit' set but not used [-Wunused-but-set-variable] sequin6.c: In function 'FeatureEditorActionGroup': sequin6.c:14737:15: warning: variable 'sep' set but not used [-Wunused-but-set-variable] sequin6.c: In function 'DoPartialFeatureProc': sequin6.c:15000:16: warning: variable 'dash_at_end' set but not used [-Wunused-but-set-variable] sequin6.c: In function 'FeatureEditorDoOneAction': sequin6.c:15592:19: warning: unused variable 'act' [-Wunused-variable] sequin6.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] sequin6.c:85:8: warning: 'publication_field_alist' defined but not used [-Wunused-variable] sequin6.c:123:8: warning: 'cds_short_field_alist' defined but not used [-Wunused-variable] sequin6.c:154:8: warning: 'rnax_short_field_alist' defined but not used [-Wunused-variable] sequin6.c:225:13: warning: 'PopulateParseQualPopup' defined but not used [-Wunused-function] sequin6.c:650:16: warning: 'TrimOffEndQuotes' defined but not used [-Wunused-function] sequin6.c:7476:13: warning: 'SetContactNameFromString' defined but not used [-Wunused-function] sequin6.c:14796:13: warning: 'DoPseudoFeatureProc' defined but not used [-Wunused-function] sequin6.c: In function 'CreateFieldSubfieldDlg.constprop.88': sequin6.c:575:16: warning: 'g2' may be used uninitialized in this function [-Wuninitialized] sequin7.c: In function 'GeneExtendFunc': sequin7.c:952:18: warning: variable 'grp' set but not used [-Wunused-but-set-variable] sequin7.c: In function 'FinishConvertingToCDS': sequin7.c:2760:17: warning: variable 'nsep' set but not used [-Wunused-but-set-variable] sequin7.c: In function 'SetBestFrame': sequin7.c:5522:26: warning: variable 'seq_str2' set but not used [-Wunused-but-set-variable] sequin7.c:5522:16: warning: variable 'seq_str1' set but not used [-Wunused-but-set-variable] sequin7.c: In function 'FixFeatureIntervalSeqLoc': sequin7.c:7047:17: warning: variable 'tmpsip' set but not used [-Wunused-but-set-variable] sequin7.c: In function 'RNABlastOptionNew': sequin7.c:7585:17: warning: variable 'rval' set but not used [-Wunused-but-set-variable] sequin7.c: In function 'GetSubListForRNAStrandCorrection': sequin7.c:7865:27: warning: variable 'found_id' set but not used [-Wunused-but-set-variable] sequin7.c: In function 'ShowClickableItemListEx': sequin7.c:10173:28: warning: variable 'sep' set but not used [-Wunused-but-set-variable] sequin7.c: In function 'ChooseFeaturesForConversion': sequin7.c:10314:28: warning: variable 'sep' set but not used [-Wunused-but-set-variable] sequin7.c: In function 'GetTableOptions': sequin7.c:13787:30: warning: variable 'sep' set but not used [-Wunused-but-set-variable] sequin7.c: In function 'RemoveCDSandmRNAForGene': sequin7.c:14070:27: warning: variable 'prev_xref' set but not used [-Wunused-but-set-variable] sequin7.c: In function 'CombineToCreatePseudoGene': sequin7.c:14153:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses] sequin7.c: In function 'TrimTaxFix': sequin7.c:15638:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] sequin7.c: In function 'FindBestNTrimSites': sequin7.c:16473:21: warning: unused variable 'trim_list' [-Wunused-variable] sequin7.c: At top level: sequin7.c:47:14: warning: 'time_of_compilation' defined but not used [-Wunused-variable] ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function] sequin7.c:5085:13: warning: 'RemoveMultipleTitles' defined but not used [-Wunused-function] sequin7.c:7169:16: warning: 'DoesBioseqMatchStringConstraint' defined but not used [-Wunused-function] sequin7.c:12246:13: warning: 'RemoveBarcodeKeywordsFromLowTrace' defined but not used [-Wunused-function] sequin7.c:14316:13: warning: 'FindBadLatLonSourceFeat' defined but not used [-Wunused-function] sequin7.c:15823:25: warning: 'NTrimIntervalFree' defined but not used [-Wunused-function] sequin7.c: In function 'GetSubListForRNAStrandCorrection': sequin7.c:7930:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] sequin7.c: In function 'CombineToCreatePseudoGene': sequin7.c:13920:9: warning: 'int_strand' may be used uninitialized in this function [-Wuninitialized] sequin7.c:14121:21: note: 'int_strand' was declared here sequin7.c:14153:48: warning: 'best_right' may be used uninitialized in this function [-Wuninitialized] sequin7.c:14153:18: warning: 'best_left' may be used uninitialized in this function [-Wuninitialized] sequin8.c: In function 'PopulateAAPopup': sequin8.c:1531:20: warning: variable 'first' set but not used [-Wunused-but-set-variable] sequin8.c: In function 'SelectBestRepeatsFromList': sequin8.c:8256:18: warning: variable 'best_len' set but not used [-Wunused-but-set-variable] sequin8.c:8251:18: warning: variable 'strand2' set but not used [-Wunused-but-set-variable] sequin8.c:8251:9: warning: variable 'strand1' set but not used [-Wunused-but-set-variable] sequin8.c: In function 'ExamineAln': sequin8.c:8772:8: warning: variable 'len' set but not used [-Wunused-but-set-variable] sequin8.c: In function 'ScrollToDiscrepancyItem': sequin8.c:16088:17: warning: variable 'special_flag' set but not used [-Wunused-but-set-variable] sequin8.c: In function 'SortVnpBymRNAPos': sequin8.c:18870:22: warning: variable 'mrna2' set but not used [-Wunused-but-set-variable] sequin8.c:18870:15: warning: variable 'mrna1' set but not used [-Wunused-but-set-variable] sequin8.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function] sequin8.c:452:13: warning: 'ExtendOnePartialFeatureToEndOrGap' defined but not used [-Wunused-function] sequin8.c:664:13: warning: 'FixReadingFrame' defined but not used [-Wunused-function] sequin8.c:6665:16: warning: 'CKA_ValidateSeqAlign' defined but not used [-Wunused-function] sequin8.c:6871:13: warning: 'CKA_ShowAln' defined but not used [-Wunused-function] sequin8.c:7199:16: warning: 'DoesRowContainPoint' defined but not used [-Wunused-function] sequin8.c:7651:16: warning: 'DoesFirstRepeatContainAllOtherRepeats' defined but not used [-Wunused-function] sequin8.c:8685:20: warning: 'GetNewBlastTPAHistAlignPiece' defined but not used [-Wunused-function] sequin8.c:8708:20: warning: 'GetOldBlastTPAHistAlignPiece' defined but not used [-Wunused-function] sequin8.c:8770:13: warning: 'ExamineAln' defined but not used [-Wunused-function] sequin8.c:13053:13: warning: 'ShowAssemblyAlignment' defined but not used [-Wunused-function] sequin8.c:15578:13: warning: 'VisitFeaturesInViewedBioseqs' defined but not used [-Wunused-function] sequin8.c:19767:13: warning: 'TrimCDSFortRNAOverlap' defined but not used [-Wunused-function] sequin8.c:20074:19: warning: 'DivideClickableItemListByEntityID' defined but not used [-Wunused-function] sequin9.c: In function 'DoVecScreens': sequin9.c:633:19: warning: variable 'hits' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'AcceptArgumentFormProc': sequin9.c:1355:18: warning: variable 'choice' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'ExtendBothEnds': sequin9.c:5080:17: warning: variable 'oldbsp' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'Extend5Prime': sequin9.c:5148:17: warning: variable 'oldbsp' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'Extend3Prime': sequin9.c:5208:17: warning: variable 'oldbsp' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'FixProteinString': sequin9.c:5419:16: warning: variable 'start' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'ShiftStopForLengthChange': sequin9.c:5496:13: warning: variable 'start' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'ExtendProtein5': sequin9.c:5689:23: warning: variable 'new_stop' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'PrepareUpdateAlignmentForProtein': sequin9.c:6210:17: warning: variable 'changed_frame' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'DrawAlignDiffs': sequin9.c:7804:20: warning: variable 'len2' set but not used [-Wunused-but-set-variable] sequin9.c:7804:14: warning: variable 'len1' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'MakeAlignDetails': sequin9.c:7939:12: warning: variable 'aln_length' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'MakeAlignSequence': sequin9.c:7988:56: warning: variable 'to' set but not used [-Wunused-but-set-variable] sequin9.c:7988:50: warning: variable 'from' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'DrawUpdateAlignmentDiffs': sequin9.c:13753:20: warning: variable 'len2' set but not used [-Wunused-but-set-variable] sequin9.c:13753:14: warning: variable 'len1' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'MakeAlignmentDetailsPicture': sequin9.c:13838:12: warning: variable 'aln_length' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'MakeUpdateAlignmentSequenceString': sequin9.c:13920:44: warning: variable 'to' set but not used [-Wunused-but-set-variable] sequin9.c:13920:38: warning: variable 'from' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'SetPreviewSequenceSelectionByPosition': sequin9.c:16273:46: warning: variable 'curr_scroll' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'DoTestUpdateOneSequence': sequin9.c:17543:30: warning: variable 'update_bsp' set but not used [-Wunused-but-set-variable] sequin9.c:17542:30: warning: variable 'update_entityID' set but not used [-Wunused-but-set-variable] sequin9.c: In function 'UpdateAllSequences': sequin9.c:17833:30: warning: unused variable 'update_entityID' [-Wunused-variable] sequin9.c:17832:30: warning: unused variable 'update_bsp' [-Wunused-variable] sequin9.c: In function 'CleanupUpdateMultiSequence': sequin9.c:18152:30: warning: unused variable 'entityIDList' [-Wunused-variable] sequin9.c: In function 'UpdateSequenceViaDownload': sequin9.c:19497:15: warning: variable 'is_na' set but not used [-Wunused-but-set-variable] sequin9.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] sequin9.c:215:13: warning: 'TruncateCDS' declared 'static' but never defined [-Wunused-function] sequin9.c:1292:16: warning: 'StrSaveNoNullEncodeSpaces' defined but not used [-Wunused-function] sequin9.c:17122:16: warning: 'MatchToBankIt' defined but not used [-Wunused-function] sequin9.c:17795:29: warning: 'FeatureUpdateNew' defined but not used [-Wunused-function] sequin9.c: In function 'TruncateSeqGraphValues': sequin9.c:3159:48: warning: 'fmax' may be used uninitialized in this function [-Wuninitialized] sequin9.c:3162:48: warning: 'fmin' may be used uninitialized in this function [-Wuninitialized] sequin9.c: In function 'UnmatchedSequenceDialog': sequin9.c:16544:16: warning: 'b' may be used uninitialized in this function [-Wuninitialized] sequin9.c: In function 'PrepareUpdateAlignmentForProtein': sequin9.c:6322:37: warning: 'gene_sfp' may be used uninitialized in this function [-Wuninitialized] sequin10.c: In function 'ApplyTableQuals': sequin10.c:4529:26: warning: variable 'fqtd' set but not used [-Wunused-but-set-variable] sequin10.c: In function 'ExternalSourceQualifierTableReader': sequin10.c:6412:22: warning: variable 'any_valid' set but not used [-Wunused-but-set-variable] sequin10.c: In function 'LoadFeatureFieldTable': sequin10.c:8728:24: warning: variable 'sep' set but not used [-Wunused-but-set-variable] sequin10.c: In function 'OrgModListsMatch': sequin10.c:10329:14: warning: variable 'found' set but not used [-Wunused-but-set-variable] sequin10.c: In function 'SubtypeListsMatch': sequin10.c:10522:14: warning: variable 'found' set but not used [-Wunused-but-set-variable] sequin10.c: In function 'RetranscribemRNA': sequin10.c:11933:3: warning: implicit declaration of function 'CreateStdValidatorFormMenus' [-Wimplicit-function-declaration] sequin10.c:11893:21: warning: variable 'sep' set but not used [-Wunused-but-set-variable] sequin10.c: In function 'TrimSequencesByAlignment': sequin10.c:12288:25: warning: variable 'b' set but not used [-Wunused-but-set-variable] sequin10.c: In function 'AddOneFeatureBetween': sequin10.c:12679:14: warning: variable 'seqfeattype' set but not used [-Wunused-but-set-variable] sequin10.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function] sequin10.c:1451:19: warning: 'OrgModTableColumnListFree' defined but not used [-Wunused-function] sequin10.c:3012:19: warning: 'FreeTableData' defined but not used [-Wunused-function] sequin10.c:8796:16: warning: 'GetRevSectionSequence' defined but not used [-Wunused-function] sequin10.c:8814:16: warning: 'GetRevSectionInterval' defined but not used [-Wunused-function] sequin10.c: In function 'CreateOneProteinId': sequin10.c:15126:27: warning: 'sip_local' may be used uninitialized in this function [-Wuninitialized] sequin10.c: In function 'AutoDefBaseFormCommon': sequin10.c:762:12: warning: 'k' may be used uninitialized in this function [-Wuninitialized] sequin10.c:715:24: note: 'k' was declared here : Psequin gcc -o sbtedit -I. -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF -UINTERNAL_NCBI_SEQUIN sbtedit.c \ -lncbidesk -lncbitool -lvibrant -lncbiobj -lncbi sbtedit.c: In function 'LookupTaxonomyFunc': sbtedit.c:604:15: warning: variable 'rsult' set but not used [-Wunused-but-set-variable] sbtedit.c: At top level: sbtedit.c:48:14: warning: 'date_of_compilation' defined but not used [-Wunused-variable] sbtedit.c:49:14: warning: 'time_of_compilation' defined but not used [-Wunused-variable] : sbtedit gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" udvmain.c udvmain.c: In function 'Nlm_Main': udvmain.c:232:8: warning: unused variable 'rcL' [-Wunused-variable] udvmain.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -o udv -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF udvmain.o -lvibnet -lncbidesk \ -lncbiNacc -lnetentr -lvibrant -lncbiobj -lncbi gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ddvmain.c ddvmain.c:147:13: warning: 'DDV_myargs' initialized and declared 'extern' [enabled by default] ddvmain.c:267:16: warning: 'DDV_UseNetwork' defined but not used [-Wunused-function] ddvmain.c: In function 'Nlm_Main': ddvmain.c:441:5: warning: 'UseNetwork' may be used uninitialized in this function [-Wuninitialized] gcc -o ddv -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF ddvmain.o -lvibnet -lncbidesk -lddvlib \ -lncbiNacc -lnetentr -lvibrant -lncbiobj -lncbi gcc -g -o blastcl3 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF -DBLAST_CS_API blastall.c \ -lblastapi -lblast -lnetblast -lncbitool -lncbiobj -lncbi blastall.c: In function 'Main_new': blastall.c:1484:9: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'Nlm_Int4 *' [-Wformat] blastall.c: In function 'Main_old': blastall.c:1809:26: warning: variable 'nuc_concat' set but not used [-Wunused-but-set-variable] blastall.c:1797:23: warning: variable 'handle_results' set but not used [-Wunused-but-set-variable] blastall.c:1792:20: warning: unused variable 'index' [-Wunused-variable] blastall.c:1791:42: warning: unused variable 'seqalignp' [-Wunused-variable] blastall.c: In function 'Nlm_Main': blastall.c:2960:13: warning: unused variable 'use_new_engine' [-Wunused-variable] blastall.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable] ../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable] blastall.c:2928:1: warning: 'readdb_use_new_blast' defined but not used [-Wunused-function] blastall.c: In function 'Main_old': blastall.c:2407:74: warning: 'fake_bsp_arr' may be used uninitialized in this function [-Wuninitialized] blastall.c:2712:40: warning: 'seq_annot_arr' may be used uninitialized in this function [-Wuninitialized] blastall.c:2615:18: warning: 'next_seqalign' may be used uninitialized in this function [-Wuninitialized] blastall.c:2706:36: warning: 'seqalign' may be used uninitialized in this function [-Wuninitialized] blastall.c:2625:28: warning: 'sap' may be used uninitialized in this function [-Wuninitialized] blastall.c:2892:38: warning: 'err_ticket' may be used uninitialized in this function [-Wuninitialized] blastall.c:2813:25: warning: 'xml_aip' may be used uninitialized in this function [-Wuninitialized] gcc -g -o taxblast -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF taxblast_main.c \ -lblastapi -lblast -lnetblast -lncbiid1 -lncbitxc2 -lncbitool \ -lncbiobj -lncbi -lm gcc -g -o idfetch -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF idfetch.c -lncbiid1 -lncbiobj -lncbi idfetch.c: In function 'Nlm_Main': idfetch.c:355:46: warning: variable 'any_type' set but not used [-Wunused-but-set-variable] idfetch.c:355:28: warning: variable 'dna_type' set but not used [-Wunused-but-set-variable] idfetch.c: In function 'IdFetch_func': idfetch.c:823:3: warning: missing braces around initializer [-Wmissing-braces] idfetch.c:823:3: warning: (near initialization for 'si.data') [-Wmissing-braces] idfetch.c:830:10: warning: variable 'group_segs' set but not used [-Wunused-but-set-variable] idfetch.c: In function 'BEGetUidsFromQuery': idfetch.c:1084:14: warning: unused variable 'e2rp' [-Wunused-variable] idfetch.c: In function 'IdFetch_func': idfetch.c:932:22: warning: 'gi_state' may be used uninitialized in this function [-Wuninitialized] idfetch.c: In function 'Nlm_Main': idfetch.c:498:13: warning: 'type_int' may be used uninitialized in this function [-Wuninitialized] idfetch.c:520:10: warning: 'sip' may be used uninitialized in this function [-Wuninitialized] gcc -o bl2seq -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF bl2seq.c -lblastapi -lblast -lncbitool \ -lncbiid1 -lncbiobj -lncbi bl2seq.c: In function 'BioseqFromAccession': bl2seq.c:331:10: warning: unused variable 'dummy_ptr' [-Wunused-variable] bl2seq.c:330:10: warning: unused variable 'defline' [-Wunused-variable] bl2seq.c:329:10: warning: unused variable 'buf' [-Wunused-variable] bl2seq.c:328:17: warning: unused variable 'buf_length' [-Wunused-variable] bl2seq.c:328:9: warning: unused variable 'retval' [-Wunused-variable] bl2seq.c:327:15: warning: unused variable 'spp' [-Wunused-variable] bl2seq.c:322:24: warning: unused variable 'number' [-Wunused-variable] bl2seq.c: In function 'Main_new': bl2seq.c:803:21: warning: unused variable 'seqalign' [-Wunused-variable] bl2seq.c: At top level: ../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -g -o asn2gb -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF asn2gb.c -lncbitool -lncbiobj -lncbi asn2gb.c:967:13: warning: 'FreeUnpubAffil' defined but not used [-Wunused-function] asn2gb.c:1290:13: warning: 'CheckOrder' defined but not used [-Wunused-function] asn2gb.c: In function 'HandleMultipleRecords': asn2gb.c:1739:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c: In function 'CompareFlatFiles': asn2gb.c:1184:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c:1191:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c:1216:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c:1242:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c:1245:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c:1250:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c:1253:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c: In function 'ReportDiffs': asn2gb.c:1071:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c:1074:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c:1077:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c:1080:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c:1083:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c:1096:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] asn2gb.c: In function 'Nlm_Main': asn2gb.c:1824:35: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized] asn2gb.c:1774:15: note: 'entityID' was declared here gcc -o tbl2asn -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF tbl2asn.c -lncbitool -lncbiobj -lncbi tbl2asn.c: In function 'ProcessOneAnnot': tbl2asn.c:2320:15: warning: variable 'sep' set but not used [-Wunused-but-set-variable] tbl2asn.c: In function 'RemoveUnnecGeneXref': tbl2asn.c:4856:24: warning: variable 'count' set but not used [-Wunused-but-set-variable] tbl2asn.c: In function 'MakeOneRnaTitle': tbl2asn.c:5032:22: warning: variable 'cds' set but not used [-Wunused-but-set-variable] tbl2asn.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -g -o gene2xml -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF gene2xml.c -lncbiobj -lncbi gene2xml.c: In function 'ProcessOneRecord': gene2xml.c:364:16: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] gcc -g -o entrez2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF entrez2.c -lncbidesk \ -lncbiobj -lvibrant -lncbi entrez2.c: In function 'Nlm_Main': entrez2.c:862:12: warning: variable 'server' set but not used [-Wunused-but-set-variable] entrez2.c:860:12: warning: variable 'port' set but not used [-Wunused-but-set-variable] entrez2.c:859:12: warning: variable 'path' set but not used [-Wunused-but-set-variable] entrez2.c: At top level: entrez2.c:720:13: warning: 'AboutProc' defined but not used [-Wunused-function] : entrez2 gcc -g -o gbseqget -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF gbseqget.c -lncbiobj -lncbi gcc -g -o asn2all -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF asn2all.c ncbithr.o -lncbiobj -lncbi \ -lpthread asn2all.c: In function 'DoLockFarComponents': asn2all.c:67:27: warning: variable 'stop_time' set but not used [-Wunused-but-set-variable] asn2all.c:67:15: warning: variable 'start_time' set but not used [-Wunused-but-set-variable] gcc -o asn2asn -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF asn2asn.c -lncbiobj -lncbi gcc -g -o asn2fsa -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF asn2fsa.c ncbithr.o \ -lncbitool -lncbiobj -lncbi -lpthread asn2fsa.c: In function 'AddBspToList': asn2fsa.c:216:15: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] asn2fsa.c: In function 'DoLockFarComponents': asn2fsa.c:406:27: warning: variable 'stop_time' set but not used [-Wunused-but-set-variable] asn2fsa.c:406:15: warning: variable 'start_time' set but not used [-Wunused-but-set-variable] gcc -g -o asndisc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF asndisc.c ncbithr.o -lncbiid1 \ -lncbitool -lncbiobj -lncbi -lpthread asndisc.c: In function 'ProcessSeqEntryList': asndisc.c:553:7: warning: extra tokens at end of #endif directive [enabled by default] asndisc.c: In function 'ProcessMultipleRecord': asndisc.c:726:19: warning: variable 'memory_usage' set but not used [-Wunused-but-set-variable] asndisc.c:724:19: warning: variable 'detailed_report' set but not used [-Wunused-but-set-variable] asndisc.c:720:19: warning: variable 'subcit' set but not used [-Wunused-but-set-variable] asndisc.c:714:25: warning: unused variable 'ofp' [-Wunused-variable] gcc -o asnmacro -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF asnmacro.c -lblast -lncbitool \ -lncbiobj -lncbi ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] ../include/asnmacro.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] ../include/asnmacro.h:1240:23: warning: 'avn' defined but not used [-Wunused-variable] ../include/asnmacro.h:1241:19: warning: 'at' defined but not used [-Wunused-variable] ../include/asnmacro.h:1242:21: warning: 'amp' defined but not used [-Wunused-variable] asnmacro.c:147:20: warning: 'GlobalAlign2Seq' defined but not used [-Wunused-function] asnmacro.c: In function 'AsnIoFromOutputStream': asnmacro.c:233:14: warning: 'aip' may be used uninitialized in this function [-Wuninitialized] gcc -g -o asnval -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF asnval.c ncbithr.o -lncbiobj -lncbi \ -lpthread asnval.c: In function 'DoLockFarComponents': asnval.c:551:27: warning: variable 'stop_time' set but not used [-Wunused-but-set-variable] asnval.c:551:15: warning: variable 'start_time' set but not used [-Wunused-but-set-variable] gcc -o cleanasn -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF cleanasn.c -lncbitool -lncbiobj -lncbi cleanasn.c: In function 'RemoveUnnecGeneXref': cleanasn.c:634:24: warning: variable 'count' set but not used [-Wunused-but-set-variable] cleanasn.c: At top level: cleanasn.c:3915:13: warning: 'CountParts' defined but not used [-Wunused-function] cleanasn.c:4157:16: warning: 'PartsTitlesIdentical' defined but not used [-Wunused-function] cleanasn.c:4185:13: warning: 'FindGenBankDiffs' defined but not used [-Wunused-function] cleanasn.c:4221:13: warning: 'FindGenBankBlocks' defined but not used [-Wunused-function] cleanasn.c:6166:19: warning: 'DuplicateStringList' defined but not used [-Wunused-function] cleanasn.c:7200:13: warning: 'DoUnpublishedReport' defined but not used [-Wunused-function] cleanasn.c:8667:16: warning: 'PvtStrToLong' defined but not used [-Wunused-function] cleanasn.c:8708:13: warning: 'AccessionToGi' defined but not used [-Wunused-function] cleanasn.c: In function 'ReportAsnDiffs': cleanasn.c:2924:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c: In function 'DoGBFFReport': cleanasn.c:5531:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:5534:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:5560:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:5589:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:5647:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:5650:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c: In function 'DoValidatorReport': cleanasn.c:5706:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:5709:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:5737:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c: In function 'CppBasicCleanup': cleanasn.c:7573:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:7577:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:7603:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:7605:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:7607:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:7609:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:7611:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c:7621:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] cleanasn.c: In function 'RemoveFeatEvInf': cleanasn.c:579:9: warning: 'nextqual' may be used uninitialized in this function [-Wuninitialized] cleanasn.c: In function 'FuseDuplicateFeats': cleanasn.c:1000:36: warning: 'sfp1' may be used uninitialized in this function [-Wuninitialized] cleanasn.c:996:22: note: 'sfp1' was declared here cleanasn.c:1001:36: warning: 'sfp2' may be used uninitialized in this function [-Wuninitialized] cleanasn.c:996:28: note: 'sfp2' was declared here gcc -g -o insdseqget -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF insdseqget.c -lncbiobj -lncbi gcc -g -o nps2gps -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF nps2gps.c -lncbitool -lncbiobj -lncbi nps2gps.c: In function 'LclMakeOneRnaTitle': nps2gps.c:401:22: warning: variable 'cds' set but not used [-Wunused-but-set-variable] nps2gps.c: In function 'LoopThroughCDSs': nps2gps.c:848:22: warning: variable 'count' set but not used [-Wunused-but-set-variable] nps2gps.c: At top level: nps2gps.c:568:17: warning: 'MakeIdFromLocusTag' defined but not used [-Wunused-function] gcc -o spidey -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF spideymain.c -lncbiid1 -lncbitool \ -lncbiobj -lncbi ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] gcc -g -o trna2sap -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF trna2sap.c -lncbiobj -lncbi trna2sap.c: In function 'ProcessOneRecord': trna2sap.c:290:28: warning: unused variable 'entityID' [-Wunused-variable] trna2sap.c: In function 'Nlm_Main': trna2sap.c:460:12: warning: variable 'tsp' set but not used [-Wunused-but-set-variable] gcc -g -o trna2tbl -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF trna2tbl.c trna2tbl.c: In function 'RunTrnaScan': trna2tbl.c:142:13: warning: unused variable 'str' [-Wunused-variable] trna2tbl.c:139:13: warning: unused variable 'speed' [-Wunused-variable] trna2tbl.c:127:13: warning: unused variable 'cmmd' [-Wunused-variable] trna2tbl.c: At top level: trna2tbl.c:232:1: warning: return type defaults to 'int' [-Wreturn-type] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" cn3dmain.c cn3dmain.c: In function 'OpenMimeFile': cn3dmain.c:237:5: warning: "/*" within comment [-Wcomment] cn3dmain.c: In function 'NetConfigureProc': cn3dmain.c:267:13: warning: unused variable 'netCurrentlyOn' [-Wunused-variable] cn3dmain.c: In function 'Cn3D_PrintImage': cn3dmain.c:288:10: warning: variable 'pmldVec' set but not used [-Wunused-but-set-variable] cn3dmain.c:284:11: warning: unused variable 'pdnmlFirst' [-Wunused-variable] cn3dmain.c: In function 'Nlm_Main': cn3dmain.c:334:13: warning: unused variable 'netCurrentlyOn' [-Wunused-variable] cn3dmain.c: At top level: cn3dmain.c:246:25: warning: 'seqedprocs' defined but not used [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF netentcf.c -o netentcf gcc -o Cn3D -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -I../include -L../shlib -DWIN_MOTIF cn3dmain.o -lvibnet -lncbicn3dOGL -lncbidesk \ -lddvlib -lncbimmdb -lncbiNacc -lnetentr \ -lvibrantOGL -lncbiobj -lncbi make[2]: Leaving directory `/build/buildd/ncbi-tools6-6.1.20110713/build' make[1]: Leaving directory `/build/buildd/ncbi-tools6-6.1.20110713' dh_auto_test /usr/bin/fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_installdirs debian/rules override_dh_auto_install make[1]: Entering directory `/build/buildd/ncbi-tools6-6.1.20110713' install -d debian/tmp/usr/lib/i386-linux-gnu install -m 644 lib/* shlib/*.so.6.1.20110713 debian/tmp/usr/lib/i386-linux-gnu for x in ncbiacc ncbiCacc netentr; do \ rm -f debian/tmp/usr/lib/i386-linux-gnu/lib$x.so.6.1.20110713 && \ ln -s libncbiNacc.so.6 \ debian/tmp/usr/lib/i386-linux-gnu/lib$x.so.6 && \ ln -s libncbiNacc.so debian/tmp/usr/lib/i386-linux-gnu/lib$x.so; \ done for x in ncbicn3d vibrant; do \ rm -f debian/tmp/usr/lib/i386-linux-gnu/lib$x.so.6.1.20110713 && \ ln -s lib${x}OGL.so.6 \ debian/tmp/usr/lib/i386-linux-gnu/lib$x.so.6 && \ ln -s lib${x}OGL.so debian/tmp/usr/lib/i386-linux-gnu/lib$x.so; \ done rm -f debian/tmp/usr/lib/i386-linux-gnu/libregexp.* cd debian/tmp/usr/lib/i386-linux-gnu && \ for f in *.so.6.1.20110713; do \ base=`basename $f .so.6.1.20110713` && \ ln -s $f $base.so.6 && \ ln -s $f $base.so; \ done install -d debian/tmp/usr/include/ncbi cp -LRp include/* debian/tmp/usr/include/ncbi cd debian/tmp/usr/include/ncbi && \ rm -f FSpCompat.h FullPath.h More*.h Optimization*.h pcre*.h find debian/tmp/usr/include -type f | xargs chmod 644 install -d debian/tmp/usr/bin install `find build -type f -perm +111 -print` debian/tmp/usr/bin rm -f debian/tmp/usr/bin/*test* rm -f debian/tmp/usr/bin/*demo* rm -f debian/tmp/usr/bin/dosimple rm -f debian/tmp/usr/bin/ncbisort rm -f debian/tmp/usr/bin/cdscan rm -f debian/tmp/usr/bin/entrcmd rm -f debian/tmp/usr/bin/blast.REAL mv debian/tmp/usr/bin/Cn3D debian/tmp/usr/bin/Cn3D-3.0 mv debian/tmp/usr/bin/blast debian/tmp/usr/bin/blast2 convert link/mswin/asntool.ico debian/asntool.xpm icotool -x -w 32 -b 32 -o - link/mswin/ncbilogo.ico | \ convert png:- debian/ncbilogo.xpm install -d debian/ncbi-data/etc/ncbi install -m 644 debian/.*rc debian/ncbi-data/etc/ncbi install -d debian/ncbi-data/usr/bin install debian/vibrate debian/ncbi-data/usr/bin install -d debian/ncbi-data/usr/share/ncbi/data install -m 644 data/* debian/ncbi-data/usr/share/ncbi/data install -d debian/ncbi-rrna-data/usr/share/ncbi/data mv debian/ncbi-data/usr/share/ncbi/data/*_[b29]*.n?? \ debian/ncbi-rrna-data/usr/share/ncbi/data/ install -d debian/ncbi-data/usr/share/pixmaps install -m 644 debian/asntool.xpm debian/ncbilogo.xpm debian/ncbi-data/usr/share/pixmaps for w in 16 32 48 256; do \ d=${w}x${w} && \ install -d debian/ncbi-data/usr/share/icons/hicolor/$d && \ icotool -x -w $w -b 32 -o debian/ncbi-data/usr/share/icons/hicolor/$d/ncbilogo.png link/mswin/ncbilogo.ico \ || exit 1 ; \ done make[1]: Leaving directory `/build/buildd/ncbi-tools6-6.1.20110713' dh_install debian/rules override_dh_installdocs make[1]: Entering directory `/build/buildd/ncbi-tools6-6.1.20110713' dh_installdocs install -m 644 config/README \ debian/libncbi6/usr/share/doc/libncbi6/README.config install -m 644 network/nsclilib/readme \ debian/libncbi6/usr/share/doc/libncbi6/README.net-cfg install -m 644 doc/fa2htgs/README \ debian/ncbi-tools-bin/usr/share/doc/ncbi-tools-bin/README.fa2htgs install -m 644 sequin/README \ debian/ncbi-tools-x11/usr/share/doc/ncbi-tools-x11/README.sequin make[1]: Leaving directory `/build/buildd/ncbi-tools6-6.1.20110713' debian/rules override_dh_installchangelogs make[1]: Entering directory `/build/buildd/ncbi-tools6-6.1.20110713' dh_installchangelogs -k README make[1]: Leaving directory `/build/buildd/ncbi-tools6-6.1.20110713' dh_installexamples debian/rules override_dh_installman make[1]: Entering directory `/build/buildd/ncbi-tools6-6.1.20110713' dh_link # otherwise runs too late to influence debian/installman debian/installman blast2 Use of qw(...) as parentheses is deprecated at debian/installman line 22. debian/installman blast2 blast Use of qw(...) as parentheses is deprecated at debian/installman line 22. debian/installman ncbi-tools-bin Use of qw(...) as parentheses is deprecated at debian/installman line 22. debian/installman ncbi-tools-x11 Use of qw(...) as parentheses is deprecated at debian/installman line 22. debian/installman ncbi-data Use of qw(...) as parentheses is deprecated at debian/installman line 22. dh_installman make[1]: Leaving directory `/build/buildd/ncbi-tools6-6.1.20110713' dh_installcatalogs dh_installcron dh_installdebconf dh_installemacsen dh_installifupdown dh_installinfo dh_installinit debian/rules override_dh_installmenu make[1]: Entering directory `/build/buildd/ncbi-tools6-6.1.20110713' debian/makemenu debian/ncbi-tools-x11.install debian/makemenu: Warning: No .desktop information for sbtedit debian/makemenu -v debian/ncbi-tools-bin.install debian/makemenu -v debian/blast2.install dh_installmenu make[1]: Leaving directory `/build/buildd/ncbi-tools6-6.1.20110713' dh_installmime dh_installmodules dh_installlogcheck dh_installlogrotate dh_installpam dh_installppp dh_installudev dh_installwm dh_installxfonts dh_installgsettings dh_bugfiles dh_ucf dh_lintian dh_gconf dh_icons dh_perl dh_usrlocal dh_link dh_compress dh_fixperms debian/rules override_dh_strip make[1]: Entering directory `/build/buildd/ncbi-tools6-6.1.20110713' dh_strip -plibncbi6 --dbg-package=libncbi6-dbg dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: libncbi6 libncbi6-dev libncbi6-dbg ncbi-tools-bin ncbi-tools-x11 blast2 libvibrant6a libvibrant6-dev libvibrant6a-dbg dh_strip debug symbol extraction: not adding gnu debuglinks since --dbg-package is given dh_strip debug symbol extraction: packages to act on: libncbi6 dh_strip debug symbol extraction: ignored packages: dpkg-deb: warning: '/build/buildd/ncbi-tools6-6.1.20110713/debian/libncbi6-dbgsym/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `libncbi6-dbgsym' in `../libncbi6-dbgsym_6.1.20110713-3ubuntu2_i386.ddeb'. dh_strip -plibvibrant6a --dbg-package=libvibrant6a-dbg dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: libncbi6 libncbi6-dev libncbi6-dbg ncbi-tools-bin ncbi-tools-x11 blast2 libvibrant6a libvibrant6-dev libvibrant6a-dbg dh_strip debug symbol extraction: not adding gnu debuglinks since --dbg-package is given dh_strip debug symbol extraction: packages to act on: libvibrant6a dh_strip debug symbol extraction: ignored packages: dpkg-deb: warning: '/build/buildd/ncbi-tools6-6.1.20110713/debian/libvibrant6a-dbgsym/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `libvibrant6a-dbgsym' in `../libvibrant6a-dbgsym_6.1.20110713-3ubuntu2_i386.ddeb'. dh_strip -Nlibncbi6 -Nlibvibrant6a dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: libncbi6 libncbi6-dev libncbi6-dbg ncbi-tools-bin ncbi-tools-x11 blast2 libvibrant6a libvibrant6-dev libvibrant6a-dbg dh_strip debug symbol extraction: packages to act on: libncbi6 libncbi6-dev libncbi6-dbg ncbi-tools-bin ncbi-tools-x11 blast2 libvibrant6a libvibrant6-dev libvibrant6a-dbg dh_strip debug symbol extraction: ignored packages: libvibrant6a libncbi6 libncbi6-dev is already stripped, ignoring dpkg-deb: warning: '/build/buildd/ncbi-tools6-6.1.20110713/debian/ncbi-tools-bin-dbgsym/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `ncbi-tools-bin-dbgsym' in `../ncbi-tools-bin-dbgsym_6.1.20110713-3ubuntu2_i386.ddeb'. dpkg-deb: warning: '/build/buildd/ncbi-tools6-6.1.20110713/debian/ncbi-tools-x11-dbgsym/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `ncbi-tools-x11-dbgsym' in `../ncbi-tools-x11-dbgsym_6.1.20110713-3ubuntu2_i386.ddeb'. dpkg-deb: warning: '/build/buildd/ncbi-tools6-6.1.20110713/debian/blast2-dbgsym/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `blast2-dbgsym' in `../blast2-dbgsym_6.1.20110713-3ubuntu2_i386.ddeb'. libvibrant6-dev is already stripped, ignoring make[1]: Leaving directory `/build/buildd/ncbi-tools6-6.1.20110713' dh_makeshlibs dh_shlibdeps dh_installdeb debian/rules override_dh_gencontrol make[1]: Entering directory `/build/buildd/ncbi-tools6-6.1.20110713' dh_gencontrol -pblast2 -- -v1:2.2.25.20110713-3ubuntu2 dh_gencontrol -Nblast2 make[1]: Leaving directory `/build/buildd/ncbi-tools6-6.1.20110713' dh_md5sums debian/rules override_dh_builddeb make[1]: Entering directory `/build/buildd/ncbi-tools6-6.1.20110713' XZ_OPT=-7e dh_builddeb -pncbi-rrna-data -- -Zxz INFO: pkgstriptranslations version 114 pkgstriptranslations: processing ncbi-rrna-data (in debian/ncbi-rrna-data); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/ncbi-rrna-data/DEBIAN/control, package ncbi-rrna-data, directory debian/ncbi-rrna-data .. removing usr/share/doc/ncbi-rrna-data/changelog.gz Searching for duplicated docs in dependency ncbi-data... symlinking changelog.Debian.gz in ncbi-rrna-data to file in ncbi-data pkgstripfiles: PNG optimization for package ncbi-rrna-data took 0 s dpkg-deb: warning: 'debian/ncbi-rrna-data/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `ncbi-rrna-data' in `../ncbi-rrna-data_6.1.20110713-3ubuntu2_all.deb'. dh_builddeb -Nncbi-rrna-data INFO: pkgstriptranslations version 114 pkgstriptranslations: processing libncbi6 (in debian/libncbi6); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/libncbi6/DEBIAN/control, package libncbi6, directory debian/libncbi6 .. removing usr/share/doc/libncbi6/changelog.gz Skipping arch: any to arch: all dependency to ncbi-data pkgstripfiles: Truncating usr/share/doc/libncbi6/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package libncbi6 took 0 s dpkg-deb: warning: 'debian/libncbi6/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `libncbi6' in `../libncbi6_6.1.20110713-3ubuntu2_i386.deb'. INFO: pkgstriptranslations version 114 pkgstriptranslations: processing libncbi6-dev (in debian/libncbi6-dev); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/libncbi6-dev/DEBIAN/control, package libncbi6-dev, directory debian/libncbi6-dev .. removing usr/share/doc/libncbi6-dev/changelog.gz Searching for duplicated docs in dependency libncbi6... symlinking changelog.Debian.gz in libncbi6-dev to file in libncbi6 pkgstripfiles: PNG optimization for package libncbi6-dev took 0 s dpkg-deb: warning: 'debian/libncbi6-dev/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `libncbi6-dev' in `../libncbi6-dev_6.1.20110713-3ubuntu2_i386.deb'. INFO: pkgstriptranslations version 114 pkgstriptranslations: processing libncbi6-dbg (in debian/libncbi6-dbg); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/libncbi6-dbg/DEBIAN/control, package libncbi6-dbg, directory debian/libncbi6-dbg .. removing usr/share/doc/libncbi6-dbg/changelog.gz Searching for duplicated docs in dependency libncbi6... symlinking changelog.Debian.gz in libncbi6-dbg to file in libncbi6 pkgstripfiles: PNG optimization for package libncbi6-dbg took 0 s dpkg-deb: warning: 'debian/libncbi6-dbg/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `libncbi6-dbg' in `../libncbi6-dbg_6.1.20110713-3ubuntu2_i386.deb'. INFO: pkgstriptranslations version 114 pkgstriptranslations: processing ncbi-data (in debian/ncbi-data); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/ncbi-data/DEBIAN/control, package ncbi-data, directory debian/ncbi-data .. removing usr/share/doc/ncbi-data/changelog.gz pkgstripfiles: Truncating usr/share/doc/ncbi-data/changelog.Debian.gz to topmost ten records OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/icons/hicolor/16x16/ncbilogo.png 16x16 pixels, 4x8 bits/pixel, RGB+alpha Input IDAT size = 968 bytes Input file size = 1025 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 968 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 968 ./usr/share/icons/hicolor/16x16/ncbilogo.png is already optimized. 1025 1025 100% ./usr/share/icons/hicolor/16x16/ncbilogo.png (Bigger 1034) 1025 1025 100% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/icons/hicolor/32x32/ncbilogo.png 32x32 pixels, 4x8 bits/pixel, RGB+alpha Input IDAT size = 2685 bytes Input file size = 2742 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2600 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2600 Output IDAT size = 2600 bytes (85 bytes decrease) Output file size = 2657 bytes (85 bytes = 3.10% decrease) 2657 2631 99% ./usr/share/icons/hicolor/32x32/ncbilogo.png 2657 2631 99% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/icons/hicolor/48x48/ncbilogo.png 48x48 pixels, 4x8 bits/pixel, RGB+alpha Input IDAT size = 4386 bytes Input file size = 4443 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4323 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4323 Output IDAT size = 4323 bytes (63 bytes decrease) Output file size = 4380 bytes (63 bytes = 1.42% decrease) 4380 4299 98% ./usr/share/icons/hicolor/48x48/ncbilogo.png 4380 4299 98% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/icons/hicolor/256x256/ncbilogo.png 256x256 pixels, 4x8 bits/pixel, RGB+alpha Input IDAT size = 38365 bytes Input file size = 38470 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 IDAT size = 37579 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 37540 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 37540 Output IDAT size = 37540 bytes (825 bytes decrease) Output file size = 37597 bytes (873 bytes = 2.27% decrease) 37597 37597 100% ./usr/share/icons/hicolor/256x256/ncbilogo.png (Bigger 44991) 37597 37597 100% pkgstripfiles: PNG optimization for package ncbi-data took 2 s dpkg-deb: warning: 'debian/ncbi-data/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `ncbi-data' in `../ncbi-data_6.1.20110713-3ubuntu2_all.deb'. INFO: pkgstriptranslations version 114 pkgstriptranslations: processing ncbi-tools-bin (in debian/ncbi-tools-bin); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/ncbi-tools-bin/DEBIAN/control, package ncbi-tools-bin, directory debian/ncbi-tools-bin .. removing usr/share/doc/ncbi-tools-bin/changelog.gz Searching for duplicated docs in dependency libncbi6... symlinking changelog.Debian.gz in ncbi-tools-bin to file in libncbi6 Searching for duplicated docs in dependency libncbi6... pkgstripfiles: PNG optimization for package ncbi-tools-bin took 0 s dpkg-deb: warning: 'debian/ncbi-tools-bin/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `ncbi-tools-bin' in `../ncbi-tools-bin_6.1.20110713-3ubuntu2_i386.deb'. INFO: pkgstriptranslations version 114 pkgstriptranslations: processing ncbi-tools-x11 (in debian/ncbi-tools-x11); do_strip: , oemstrip: debian/ncbi-tools-x11/usr/share/applications/Cn3D-3.0.desktop: does not have gettext domain, not stripping debian/ncbi-tools-x11/usr/share/applications/Psequin.desktop: does not have gettext domain, not stripping debian/ncbi-tools-x11/usr/share/applications/ddv.desktop: does not have gettext domain, not stripping debian/ncbi-tools-x11/usr/share/applications/entrez2.desktop: does not have gettext domain, not stripping debian/ncbi-tools-x11/usr/share/applications/udv.desktop: does not have gettext domain, not stripping pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/ncbi-tools-x11/DEBIAN/control, package ncbi-tools-x11, directory debian/ncbi-tools-x11 .. removing usr/share/doc/ncbi-tools-x11/changelog.gz Searching for duplicated docs in dependency libncbi6... symlinking changelog.Debian.gz in ncbi-tools-x11 to file in libncbi6 Searching for duplicated docs in dependency libvibrant6a... Searching for duplicated docs in dependency libncbi6... Searching for duplicated docs in dependency libvibrant6a... OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/doc/ncbi-tools-x11/images/affil.png 601x344 pixels, 3x8 bits/pixel, RGB Input IDAT size = 6679 bytes Input file size = 6736 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5994 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 IDAT size = 5812 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 1 IDAT size = 5812 Output IDAT size = 5812 bytes (867 bytes decrease) Output file size = 5869 bytes (867 bytes = 12.87% decrease) 5869 5644 96% ./usr/share/doc/ncbi-tools-x11/images/affil.png 5869 5644 96% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/doc/ncbi-tools-x11/images/annot.png 526x544 pixels, 3x8 bits/pixel, RGB Input IDAT size = 7207 bytes Input file size = 7264 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6211 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 IDAT size = 6108 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 1 IDAT size = 6108 Output IDAT size = 6108 bytes (1099 bytes decrease) Output file size = 6165 bytes (1099 bytes = 15.13% decrease) 6165 5942 96% ./usr/share/doc/ncbi-tools-x11/images/annot.png 6165 5942 96% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/doc/ncbi-tools-x11/images/authors.png 601x344 pixels, 3x8 bits/pixel, RGB Input IDAT size = 7869 bytes Input file size = 7926 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7145 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 IDAT size = 7093 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 7046 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 7046 Output IDAT size = 7046 bytes (823 bytes decrease) Output file size = 7103 bytes (823 bytes = 10.38% decrease) 7103 6559 92% ./usr/share/doc/ncbi-tools-x11/images/authors.png 7103 6559 92% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/doc/ncbi-tools-x11/images/cds_edit.png 477x479 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11543 bytes Input file size = 11612 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9729 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9729 Output IDAT size = 9729 bytes (1814 bytes decrease) Output file size = 9786 bytes (1826 bytes = 15.73% decrease) 9786 8689 88% ./usr/share/doc/ncbi-tools-x11/images/cds_edit.png 9786 8689 88% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/doc/ncbi-tools-x11/images/contact.png 601x344 pixels, 3x8 bits/pixel, RGB Input IDAT size = 6254 bytes Input file size = 6311 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5721 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 IDAT size = 5599 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 IDAT size = 5558 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 5535 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 5535 Output IDAT size = 5535 bytes (719 bytes decrease) Output file size = 5592 bytes (719 bytes = 11.39% decrease) 5592 5367 95% ./usr/share/doc/ncbi-tools-x11/images/contact.png 5592 5367 95% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/doc/ncbi-tools-x11/images/desktop.png 519x719 pixels, 3x8 bits/pixel, RGB Input IDAT size = 16206 bytes Input file size = 16275 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14155 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14155 Output IDAT size = 14155 bytes (2051 bytes decrease) Output file size = 14212 bytes (2063 bytes = 12.68% decrease) 14212 13033 91% ./usr/share/doc/ncbi-tools-x11/images/desktop.png 14212 13033 91% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/doc/ncbi-tools-x11/images/format.png 439x280 pixels, 3x8 bits/pixel, RGB Input IDAT size = 6705 bytes Input file size = 6762 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5904 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 IDAT size = 5903 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 1 IDAT size = 5903 Output IDAT size = 5903 bytes (802 bytes decrease) Output file size = 5960 bytes (802 bytes = 11.86% decrease) 5960 5339 89% ./usr/share/doc/ncbi-tools-x11/images/format.png 5960 5339 89% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/doc/ncbi-tools-x11/images/genbank.png 711x762 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28670 bytes Input file size = 28763 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23474 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23474 Output IDAT size = 23474 bytes (5196 bytes decrease) Output file size = 23531 bytes (5232 bytes = 18.19% decrease) 23531 20839 88% ./usr/share/doc/ncbi-tools-x11/images/genbank.png 23531 20839 88% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/doc/ncbi-tools-x11/images/graphic.png 568x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 7594 bytes Input file size = 7651 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7100 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 IDAT size = 6826 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 IDAT size = 6713 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 4 IDAT size = 6713 Output IDAT size = 6713 bytes (881 bytes decrease) Output file size = 6770 bytes (881 bytes = 11.51% decrease) 6770 6454 95% ./usr/share/doc/ncbi-tools-x11/images/graphic.png 6770 6454 95% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/doc/ncbi-tools-x11/images/loc_page.png 477x479 pixels, 3x8 bits/pixel, RGB Input IDAT size = 8497 bytes Input file size = 8587 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7486 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 IDAT size = 7469 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 4 IDAT size = 7469 Output IDAT size = 7469 bytes (1028 bytes decrease) Output file size = 7547 bytes (1040 bytes = 12.11% decrease) 7547 7007 92% ./usr/share/doc/ncbi-tools-x11/images/loc_page.png 7547 7007 92% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/doc/ncbi-tools-x11/images/logo.png 130x45 pixels, 3x8 bits/pixel, RGB Reducing image to 8 bits/pixel, 23 colors in palette Input IDAT size = 1889 bytes Input file size = 2050 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 681 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 674 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 674 Output IDAT size = 674 bytes (1215 bytes decrease) Output file size = 916 bytes (1134 bytes = 55.32% decrease) 916 778 84% ./usr/share/doc/ncbi-tools-x11/images/logo.png 916 778 84% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/doc/ncbi-tools-x11/images/net_cfg.png 351x222 pixels, 3x8 bits/pixel, RGB Input IDAT size = 4834 bytes Input file size = 4891 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4347 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4347 Output IDAT size = 4347 bytes (487 bytes decrease) Output file size = 4404 bytes (487 bytes = 9.96% decrease) 4404 4074 92% ./usr/share/doc/ncbi-tools-x11/images/net_cfg.png 4404 4074 92% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/doc/ncbi-tools-x11/images/nucaln.png 526x544 pixels, 3x8 bits/pixel, RGB Input IDAT size = 8582 bytes Input file size = 8672 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7532 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 IDAT size = 7357 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 1 IDAT size = 7357 Output IDAT size = 7357 bytes (1225 bytes decrease) Output file size = 7435 bytes (1237 bytes = 14.26% decrease) 7435 6946 93% ./usr/share/doc/ncbi-tools-x11/images/nucaln.png 7435 6946 93% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/doc/ncbi-tools-x11/images/nucset.png 526x544 pixels, 3x8 bits/pixel, RGB Input IDAT size = 10710 bytes Input file size = 10779 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9210 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9210 Output IDAT size = 9210 bytes (1500 bytes decrease) Output file size = 9267 bytes (1512 bytes = 14.03% decrease) 9267 8399 90% ./usr/share/doc/ncbi-tools-x11/images/nucset.png 9267 8399 90% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/doc/ncbi-tools-x11/images/nucsing1.png 526x544 pixels, 3x8 bits/pixel, RGB Input IDAT size = 10447 bytes Input file size = 10516 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8996 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8996 Output IDAT size = 8996 bytes (1451 bytes decrease) Output file size = 9053 bytes (1463 bytes = 13.91% decrease) 9053 8213 90% ./usr/share/doc/ncbi-tools-x11/images/nucsing1.png 9053 8213 90% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/doc/ncbi-tools-x11/images/nucsing2.png 526x544 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11312 bytes Input file size = 11381 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9453 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 IDAT size = 9390 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 1 IDAT size = 9390 Output IDAT size = 9390 bytes (1922 bytes decrease) Output file size = 9447 bytes (1934 bytes = 16.99% decrease) 9447 8511 90% ./usr/share/doc/ncbi-tools-x11/images/nucsing2.png 9447 8511 90% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/doc/ncbi-tools-x11/images/organism.png 526x544 pixels, 3x8 bits/pixel, RGB Input IDAT size = 10889 bytes Input file size = 10958 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8631 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 IDAT size = 8492 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 1 IDAT size = 8492 Output IDAT size = 8492 bytes (2397 bytes decrease) Output file size = 8549 bytes (2409 bytes = 21.98% decrease) 8549 7695 90% ./usr/share/doc/ncbi-tools-x11/images/organism.png 8549 7695 90% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/doc/ncbi-tools-x11/images/props_pg.png 477x479 pixels, 3x8 bits/pixel, RGB Input IDAT size = 8354 bytes Input file size = 8444 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7153 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7153 Output IDAT size = 7153 bytes (1201 bytes decrease) Output file size = 7231 bytes (1213 bytes = 14.37% decrease) 7231 6837 94% ./usr/share/doc/ncbi-tools-x11/images/props_pg.png 7231 6837 94% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/doc/ncbi-tools-x11/images/protein1.png 526x544 pixels, 3x8 bits/pixel, RGB Input IDAT size = 10643 bytes Input file size = 10712 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9027 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9027 Output IDAT size = 9027 bytes (1616 bytes decrease) Output file size = 9084 bytes (1628 bytes = 15.20% decrease) 9084 8345 91% ./usr/share/doc/ncbi-tools-x11/images/protein1.png 9084 8345 91% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/doc/ncbi-tools-x11/images/protein2.png 526x544 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11662 bytes Input file size = 11731 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9798 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9798 Output IDAT size = 9798 bytes (1864 bytes decrease) Output file size = 9855 bytes (1876 bytes = 15.99% decrease) 9855 8927 90% ./usr/share/doc/ncbi-tools-x11/images/protein2.png 9855 8927 90% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/doc/ncbi-tools-x11/images/sequence.png 711x762 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17416 bytes Input file size = 17497 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15549 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15549 Output IDAT size = 15549 bytes (1867 bytes decrease) Output file size = 15606 bytes (1891 bytes = 10.81% decrease) 15606 14259 91% ./usr/share/doc/ncbi-tools-x11/images/sequence.png 15606 14259 91% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/doc/ncbi-tools-x11/images/submit.png 601x344 pixels, 3x8 bits/pixel, RGB Input IDAT size = 7444 bytes Input file size = 7501 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6516 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 IDAT size = 6426 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 1 IDAT size = 6426 Output IDAT size = 6426 bytes (1018 bytes decrease) Output file size = 6483 bytes (1018 bytes = 13.57% decrease) 6483 6058 93% ./usr/share/doc/ncbi-tools-x11/images/submit.png 6483 6058 93% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/doc/ncbi-tools-x11/images/update.png 627x530 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15334 bytes Input file size = 15403 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13114 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13114 Output IDAT size = 13114 bytes (2220 bytes decrease) Output file size = 13171 bytes (2232 bytes = 14.49% decrease) 13171 11952 90% ./usr/share/doc/ncbi-tools-x11/images/update.png 13171 11952 90% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/doc/ncbi-tools-x11/images/validate.png 470x651 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20130 bytes Input file size = 20211 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15936 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15936 Output IDAT size = 15936 bytes (4194 bytes decrease) Output file size = 15993 bytes (4218 bytes = 20.87% decrease) 15993 14098 88% ./usr/share/doc/ncbi-tools-x11/images/validate.png 15993 14098 88% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/doc/ncbi-tools-x11/images/welcome.png 326x390 pixels, 3x8 bits/pixel, RGB Reducing image to 8 bits/pixel, 20 colors in palette Input IDAT size = 6772 bytes Input file size = 6850 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3588 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3588 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3588 Output IDAT size = 3588 bytes (3184 bytes decrease) Output file size = 3738 bytes (3112 bytes = 45.43% decrease) 3738 3279 87% ./usr/share/doc/ncbi-tools-x11/images/welcome.png 3738 3279 87% pkgstripfiles: PNG optimization for package ncbi-tools-x11 took 86 s dpkg-deb: warning: 'debian/ncbi-tools-x11/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `ncbi-tools-x11' in `../ncbi-tools-x11_6.1.20110713-3ubuntu2_i386.deb'. INFO: pkgstriptranslations version 114 pkgstriptranslations: processing blast2 (in debian/blast2); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/blast2/DEBIAN/control, package blast2, directory debian/blast2 .. removing usr/share/doc/blast2/changelog.gz Searching for duplicated docs in dependency libncbi6... symlinking changelog.Debian.gz in blast2 to file in libncbi6 Searching for duplicated docs in dependency libncbi6... pkgstripfiles: PNG optimization for package blast2 took 0 s dpkg-deb: warning: 'debian/blast2/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `blast2' in `../blast2_2.2.25.20110713-3ubuntu2_i386.deb'. INFO: pkgstriptranslations version 114 pkgstriptranslations: processing libvibrant6a (in debian/libvibrant6a); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/libvibrant6a/DEBIAN/control, package libvibrant6a, directory debian/libvibrant6a .. removing usr/share/doc/libvibrant6a/changelog.gz Searching for duplicated docs in dependency libncbi6... symlinking changelog.Debian.gz in libvibrant6a to file in libncbi6 Searching for duplicated docs in dependency libncbi6... pkgstripfiles: PNG optimization for package libvibrant6a took 0 s dpkg-deb: warning: 'debian/libvibrant6a/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `libvibrant6a' in `../libvibrant6a_6.1.20110713-3ubuntu2_i386.deb'. INFO: pkgstriptranslations version 114 pkgstriptranslations: processing libvibrant6-dev (in debian/libvibrant6-dev); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/libvibrant6-dev/DEBIAN/control, package libvibrant6-dev, directory debian/libvibrant6-dev .. removing usr/share/doc/libvibrant6-dev/changelog.gz Searching for duplicated docs in dependency libvibrant6a... symlinking changelog.Debian.gz in libvibrant6-dev to file in libncbi6 Searching for duplicated docs in dependency libncbi6-dev... pkgstripfiles: PNG optimization for package libvibrant6-dev took 0 s dpkg-deb: warning: 'debian/libvibrant6-dev/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `libvibrant6-dev' in `../libvibrant6-dev_6.1.20110713-3ubuntu2_i386.deb'. INFO: pkgstriptranslations version 114 pkgstriptranslations: processing libvibrant6a-dbg (in debian/libvibrant6a-dbg); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/libvibrant6a-dbg/DEBIAN/control, package libvibrant6a-dbg, directory debian/libvibrant6a-dbg .. removing usr/share/doc/libvibrant6a-dbg/changelog.gz Searching for duplicated docs in dependency libvibrant6a... symlinking changelog.Debian.gz in libvibrant6a-dbg to file in libncbi6 pkgstripfiles: PNG optimization for package libvibrant6a-dbg took 0 s dpkg-deb: warning: 'debian/libvibrant6a-dbg/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `libvibrant6a-dbg' in `../libvibrant6a-dbg_6.1.20110713-3ubuntu2_i386.deb'. make[1]: Leaving directory `/build/buildd/ncbi-tools6-6.1.20110713' dpkg-genchanges -b -mUbuntu/i386 Build Daemon >../ncbi-tools6_6.1.20110713-3ubuntu2_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build ncbi-tools6-6.1.20110713 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20120210-2353 Publishing debug debs. chroot-autobuild/build/buildd/blast2_2.2.25.20110713-3ubuntu2_i386.deb: new debian package, version 2.0. size 612378 bytes: control archive= 2300 bytes. 938 bytes, 21 lines control 3037 bytes, 49 lines md5sums 185 bytes, 7 lines * postinst #!/bin/sh 160 bytes, 5 lines * postrm #!/bin/sh Package: blast2 Source: ncbi-tools6 (6.1.20110713-3ubuntu2) Version: 1:2.2.25.20110713-3ubuntu2 Architecture: i386 Maintainer: Ubuntu Developers Installed-Size: 1186 Depends: libc6 (>= 2.7), libncbi6 (>= 6.1.20110713), libncbi6 (<< 6.1.20110713.1) Suggests: ncbi-rrna-data, ncbi-tools-bin, ncbi-tools-x11, libvibrant6a Section: science Priority: optional Multi-Arch: foreign Homepage: http://www.ncbi.nih.gov/BLAST/ Description: Basic Local Alignment Search Tool The famous sequence alignment program. This is "official" NCBI version, #2. The blastall executable allows you to give a nucleotide or protein sequence to the program. It is compared against databases and a summary of matches is returned to the user. . Note that databases are not included in Debian; they must be retrieved manually. Original-Maintainer: Debian Med Packaging Team chroot-autobuild/build/buildd/libncbi6_6.1.20110713-3ubuntu2_i386.deb: new debian package, version 2.0. size 4513680 bytes: control archive= 70737 bytes. 749 bytes, 17 lines control 2058 bytes, 26 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 334 bytes, 15 lines shlibs 413746 bytes, 10958 lines symbols Package: libncbi6 Source: ncbi-tools6 Version: 6.1.20110713-3ubuntu2 Architecture: i386 Maintainer: Ubuntu Developers Installed-Size: 10605 Pre-Depends: multiarch-support Depends: libc6 (>= 2.15), ncbi-data (= 6.1.20110713-3ubuntu2) Section: libs Priority: optional Multi-Arch: same Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description: NCBI libraries for biology applications The NCBI Software Development Toolkit was developed for the production and distribution of GenBank, Entrez, BLAST, and related services by NCBI. It allows you to read and write NCBI ASN.1 files, builds Blast or Entrez, etc. Original-Maintainer: Debian Med Packaging Team chroot-autobuild/build/buildd/libncbi6-dev_6.1.20110713-3ubuntu2_i386.deb: new debian package, version 2.0. size 6286158 bytes: control archive= 14044 bytes. 677 bytes, 17 lines control 33683 bytes, 502 lines md5sums Package: libncbi6-dev Source: ncbi-tools6 Version: 6.1.20110713-3ubuntu2 Architecture: i386 Maintainer: Ubuntu Developers Installed-Size: 17621 Depends: libncbi6 (= 6.1.20110713-3ubuntu2) Recommends: ncbi-tools-bin Provides: ncbi-tools-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description: NCBI libraries for biology applications (development files) This package supplies development versions of NCBI's non-graphical C libraries, along with the corresponding header files. Original-Maintainer: Debian Med Packaging Team chroot-autobuild/build/buildd/libncbi6-dbg_6.1.20110713-3ubuntu2_i386.deb: new debian package, version 2.0. size 6380950 bytes: control archive= 1517 bytes. 866 bytes, 21 lines control 1661 bytes, 16 lines md5sums Package: libncbi6-dbg Source: ncbi-tools6 Version: 6.1.20110713-3ubuntu2 Architecture: i386 Maintainer: Ubuntu Developers Installed-Size: 6896 Depends: libncbi6 (= 6.1.20110713-3ubuntu2) Recommends: gdb Section: debug Priority: extra Multi-Arch: same Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description: NCBI libraries for biology applications (debugging symbols) This package is useful to provide a backtrace with symbol names in a debugger; this facilitates interpretation of core dumps, and aids in finding logic errors in programs using the libraries in this package (or the libraries themselves). . Non-programmers will likely have little use for this package. See the libncbi6 package for more information. Original-Maintainer: Debian Med Packaging Team chroot-autobuild/build/buildd/ncbi-data_6.1.20110713-3ubuntu2_all.deb: new debian package, version 2.0. size 5773188 bytes: control archive= 2929 bytes. 40 bytes, 2 lines conffiles 521 bytes, 14 lines control 5576 bytes, 83 lines md5sums Package: ncbi-data Source: ncbi-tools6 Version: 6.1.20110713-3ubuntu2 Architecture: all Maintainer: Ubuntu Developers Installed-Size: 22340 Section: libs Priority: optional Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description: Platform-independent data for the NCBI toolkit This package contains support files needed by the NCBI toolkit on all platforms. Original-Maintainer: Debian Med Packaging Team chroot-autobuild/build/buildd/ncbi-rrna-data_6.1.20110713-3ubuntu2_all.deb: new debian package, version 2.0. size 17716788 bytes: control archive= 1064 bytes. 971 bytes, 22 lines control 838 bytes, 11 lines md5sums Package: ncbi-rrna-data Source: ncbi-tools6 Version: 6.1.20110713-3ubuntu2 Architecture: all Maintainer: Ubuntu Developers Installed-Size: 131437 Pre-Depends: dpkg (>= 1.15.6) Depends: ncbi-data Recommends: blast2 Replaces: ncbi-data (= 6.1.20081116a-1) Section: science Priority: optional Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description: large rRNA BLAST databases distributed with the NCBI toolkit This package contains some ribosomal RNA BLAST databases distributed as part of the NCBI C Toolkit that are too large and specialized to include in ncbi-data. Specifically, it contains the databases Combined16SrRNA_2-12-2008, LSURef_93.fasta, and SSURef_93.fasta, along with an alias file to facilitate searching all three of them in conjunction with the 16SCore database included in ncbi-data. Original-Maintainer: Debian Med Packaging Team chroot-autobuild/build/buildd/ncbi-tools-bin_6.1.20110713-3ubuntu2_i386.deb: new debian package, version 2.0. size 519532 bytes: control archive= 3095 bytes. 1010 bytes, 21 lines control 4616 bytes, 77 lines md5sums 185 bytes, 7 lines * postinst #!/bin/sh 160 bytes, 5 lines * postrm #!/bin/sh Package: ncbi-tools-bin Source: ncbi-tools6 Version: 6.1.20110713-3ubuntu2 Architecture: i386 Maintainer: Ubuntu Developers Installed-Size: 1365 Depends: libc6 (>= 2.7), libncbi6 (>= 6.1.20110713), libncbi6 (<< 6.1.20110713.1) Suggests: blast2, ncbi-tools-x11, libvibrant6a Breaks: libncbi6-dev (<< 6.1.20110713-3~) Replaces: libncbi6-dev (<< 6.1.20110713-3~) Section: science Priority: optional Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description: NCBI libraries for biology applications (text-based utilities) This package includes various utilities distributed with the NCBI C SDK, including the development tools asntool and errhdr (formerly of libncbi6-dev). None of the programs in this package require X; you can find the X-based utilities in the ncbi-tools-x11 package. BLAST and related tools are in a separate package (blast2). Original-Maintainer: Debian Med Packaging Team chroot-autobuild/build/buildd/ncbi-tools-x11_6.1.20110713-3ubuntu2_i386.deb: new debian package, version 2.0. size 1136610 bytes: control archive= 2609 bytes. 873 bytes, 18 lines control 3901 bytes, 53 lines md5sums 528 bytes, 18 lines * postinst #!/bin/sh 293 bytes, 8 lines * postrm #!/bin/sh 68 bytes, 5 lines * prerm #!/bin/sh Package: ncbi-tools-x11 Source: ncbi-tools6 Version: 6.1.20110713-3ubuntu2 Architecture: i386 Maintainer: Ubuntu Developers Installed-Size: 2564 Depends: libc6 (>= 2.4), libncbi6 (>= 6.1.20110713), libvibrant6a (>= 6.1.20110713), libncbi6 (<< 6.1.20110713.1), libvibrant6a (<< 6.1.20110713.1) Suggests: blast2, ncbi-tools-bin Section: science Priority: optional Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description: NCBI libraries for biology applications (X-based utilities) This package includes some X-based utilities distributed with the NCBI C SDK: Cn3D, Network Entrez, Sequin, ddv, and udv. These programs are not part of ncbi-tools-bin because they depend on several additional library packages. Original-Maintainer: Debian Med Packaging Team chroot-autobuild/build/buildd/libvibrant6a_6.1.20110713-3ubuntu2_i386.deb: new debian package, version 2.0. size 1521028 bytes: control archive= 17210 bytes. 867 bytes, 17 lines control 572 bytes, 7 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 136 bytes, 5 lines shlibs 89916 bytes, 2426 lines symbols Package: libvibrant6a Source: ncbi-tools6 Version: 6.1.20110713-3ubuntu2 Architecture: i386 Maintainer: Ubuntu Developers Installed-Size: 3455 Pre-Depends: multiarch-support Depends: lesstif2 (>= 1:0.94.4), libc6 (>= 2.4), libgl1-mesa-glx | libgl1, libglu1-mesa | libglu1, libncbi6 (>= 6.1.20110713), libpng12-0 (>= 1.2.13-4), libx11-6, libxmu6, libxt6, libncbi6 (<< 6.1.20110713.1) Section: libs Priority: optional Multi-Arch: same Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description: NCBI libraries for graphic biology applications This is the library for those who just want to run Vibrant applications. It also includes a wrapper (vibrate) that allows many NCBI applications to provide a GUI for selecting options. Original-Maintainer: Debian Med Packaging Team chroot-autobuild/build/buildd/libvibrant6-dev_6.1.20110713-3ubuntu2_i386.deb: new debian package, version 2.0. size 2306434 bytes: control archive= 4083 bytes. 713 bytes, 15 lines control 7372 bytes, 119 lines md5sums 337 bytes, 13 lines * postinst #!/bin/sh Package: libvibrant6-dev Source: ncbi-tools6 Version: 6.1.20110713-3ubuntu2 Architecture: i386 Maintainer: Ubuntu Developers Installed-Size: 6159 Depends: libvibrant6a (= 6.1.20110713-3ubuntu2), libncbi6-dev (= 6.1.20110713-3ubuntu2), lesstif2-dev, libxmu-dev, libglu1-mesa-dev | libglu-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description: NCBI libraries for graphic biology applications (development files) Vibrant allows you to develop portable (Motif, MS-Windows, Mac-OS) graphic biological applications. Original-Maintainer: Debian Med Packaging Team chroot-autobuild/build/buildd/libvibrant6a-dbg_6.1.20110713-3ubuntu2_i386.deb: new debian package, version 2.0. size 2524806 bytes: control archive= 1038 bytes. 928 bytes, 22 lines control 605 bytes, 6 lines md5sums Package: libvibrant6a-dbg Source: ncbi-tools6 Version: 6.1.20110713-3ubuntu2 Architecture: i386 Maintainer: Ubuntu Developers Installed-Size: 2825 Depends: libvibrant6a (= 6.1.20110713-3ubuntu2) Recommends: gdb Suggests: libncbi6-dbg (= 6.1.20110713-3ubuntu2) Section: debug Priority: extra Multi-Arch: same Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description: NCBI libraries for graphic biology applications (unstripped) This package is useful to provide a backtrace with symbol names in a debugger; this facilitates interpretation of core dumps, and aids in finding logic errors in programs using the libraries in this package (or the libraries themselves). . Non-programmers will likely have little use for this package. See the libvibrant6a package for more information. Original-Maintainer: Debian Med Packaging Team chroot-autobuild/build/buildd/blast2_2.2.25.20110713-3ubuntu2_i386.deb: drwxr-xr-x root/root 0 2012-02-10 23:46 ./ drwxr-xr-x root/root 0 2012-02-10 23:46 ./usr/ drwxr-xr-x root/root 0 2012-02-10 23:47 ./usr/bin/ -rwxr-xr-x root/root 23308 2012-02-10 23:47 ./usr/bin/bl2seq -rwxr-xr-x root/root 36280 2012-02-10 23:47 ./usr/bin/blast2 -rwxr-xr-x root/root 57076 2012-02-10 23:47 ./usr/bin/blastall -rwxr-xr-x root/root 44564 2012-02-10 23:47 ./usr/bin/blastall_old -rwxr-xr-x root/root 44556 2012-02-10 23:47 ./usr/bin/blastcl3 -rwxr-xr-x root/root 35236 2012-02-10 23:47 ./usr/bin/blastclust -rwxr-xr-x root/root 44696 2012-02-10 23:47 ./usr/bin/blastpgp -rwxr-xr-x root/root 14036 2012-02-10 23:47 ./usr/bin/copymat -rwxr-xr-x root/root 10240 2012-02-10 23:47 ./usr/bin/fastacmd -rwxr-xr-x root/root 22756 2012-02-10 23:47 ./usr/bin/formatdb -rwxr-xr-x root/root 22644 2012-02-10 23:47 ./usr/bin/formatrpsdb -rwxr-xr-x root/root 31288 2012-02-10 23:47 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23:46 ./usr/share/man/man1/seedtop.1.gz -> blast.1.gz lrwxrwxrwx root/root 0 2012-02-10 23:46 ./usr/share/man/man1/blast2.1.gz -> blast.1.gz lrwxrwxrwx root/root 0 2012-02-10 23:46 ./usr/share/man/man1/impala.1.gz -> blast.1.gz lrwxrwxrwx root/root 0 2012-02-10 23:46 ./usr/share/man/man1/megablast.1.gz -> blast.1.gz lrwxrwxrwx root/root 0 2012-02-10 23:46 ./usr/share/man/man1/blastcl3.1.gz -> blast.1.gz lrwxrwxrwx root/root 0 2012-02-10 23:46 ./usr/share/man/man1/blastpgp.1.gz -> blast.1.gz lrwxrwxrwx root/root 0 2012-02-10 23:46 ./usr/share/man/man1/blastall_old.1.gz -> blast.1.gz chroot-autobuild/build/buildd/libncbi6_6.1.20110713-3ubuntu2_i386.deb: drwxr-xr-x root/root 0 2012-02-10 23:46 ./ drwxr-xr-x root/root 0 2012-02-10 23:46 ./usr/ drwxr-xr-x root/root 0 2012-02-10 23:46 ./usr/lib/ drwxr-xr-x root/root 0 2012-02-10 23:47 ./usr/lib/i386-linux-gnu/ -rw-r--r-- root/root 624272 2012-02-10 23:47 ./usr/lib/i386-linux-gnu/libblast.so.6.1.20110713 -rw-r--r-- root/root 117536 2012-02-10 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changelog.gz lrwxrwxrwx root/root 0 2012-02-10 23:53 ./usr/share/doc/libvibrant6a-dbg/changelog.Debian.gz -> ../libncbi6/changelog.Debian.gz ncbi-tools6_6.1.20110713-3ubuntu2_i386.changes: Format: 1.8 Date: Fri, 10 Feb 2012 14:56:30 -0800 Source: ncbi-tools6 Binary: libncbi6 libncbi6-dev libncbi6-dbg ncbi-data ncbi-rrna-data ncbi-tools-bin ncbi-tools-x11 blast2 libvibrant6a libvibrant6-dev libvibrant6a-dbg Architecture: i386 all Version: 6.1.20110713-3ubuntu2 Distribution: precise Urgency: low Maintainer: Ubuntu/i386 Build Daemon Changed-By: Steve Langasek Description: blast2 - Basic Local Alignment Search Tool libncbi6 - NCBI libraries for biology applications libncbi6-dbg - NCBI libraries for biology applications (debugging symbols) libncbi6-dev - NCBI libraries for biology applications (development files) libvibrant6-dev - NCBI libraries for graphic biology applications (development file libvibrant6a - NCBI libraries for graphic biology applications libvibrant6a-dbg - NCBI libraries for graphic biology applications (unstripped) ncbi-data - Platform-independent data for the NCBI toolkit ncbi-rrna-data - large rRNA BLAST databases distributed with the NCBI toolkit ncbi-tools-bin - NCBI libraries for biology applications (text-based utilities) ncbi-tools-x11 - NCBI libraries for biology applications (X-based utilities) Changes: ncbi-tools6 (6.1.20110713-3ubuntu2) precise; urgency=low . * No-change rebuild with gzip 1.4-1ubuntu2 to get multiarch-clean compressed documentation. 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science optional ncbi-tools-bin_6.1.20110713-3ubuntu2_i386.deb 8ff01bff7825a93b6a256f6bc74d934e 1136610 science optional ncbi-tools-x11_6.1.20110713-3ubuntu2_i386.deb 219979399340a2a3500dc535f2dd14b8 1521028 libs optional libvibrant6a_6.1.20110713-3ubuntu2_i386.deb 95b1cd96ff8f6cee2efa45d69f9c6e63 2306434 libdevel optional libvibrant6-dev_6.1.20110713-3ubuntu2_i386.deb 07ca3c40ad2bbf5876d50263342b0195 2524806 debug extra libvibrant6a-dbg_6.1.20110713-3ubuntu2_i386.deb Original-Maintainer: Debian Med Packaging Team ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/ncbi-tools6-6.1.20110713 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge libxmu6 groff-base libx11-data libxdmcp-dev fontconfig-config ttf-dejavu-core gettext file zlib1g-dev libhtml-parser-perl libhttp-cookies-perl liburi-perl libmagickwand4 x11-common csh libx11-dev libcroco3 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libio-socket-ssl-perl mesa-common-dev libxext-dev liblwp-protocol-https-perl libpthread-stubs0-dev ucf libxau-dev libxmu-headers libwww-robotrules-perl libxrender-dev gettext-base libpng12-dev libunistring0 libsm6 libglu1-mesa-dev libxft2 x11proto-render-dev libxext6 libpipeline1 libltdl7 libdrm-dev libkms1 libsm-dev (Reading database ... 18710 files and directories currently installed.) 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Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20120210-2353 Build needed 00:26:01, 789992k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '90967f6355fab39bafd4890b30e09e877b48357d'] Scanning for processes to kill in build /home/buildd/build-90967f6355fab39bafd4890b30e09e877b48357d/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '90967f6355fab39bafd4890b30e09e877b48357d'] Unmounting chroot for build 90967f6355fab39bafd4890b30e09e877b48357d... none /home/buildd/build-90967f6355fab39bafd4890b30e09e877b48357d/chroot-autobuild/proc proc rw,relatime 0 0 none /home/buildd/build-90967f6355fab39bafd4890b30e09e877b48357d/chroot-autobuild/dev/pts devpts rw,relatime 0 0 none /home/buildd/build-90967f6355fab39bafd4890b30e09e877b48357d/chroot-autobuild/sys sysfs rw,relatime 0 0 none /home/buildd/build-90967f6355fab39bafd4890b30e09e877b48357d/chroot-autobuild/dev/shm tmpfs rw,relatime 0 0 RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '90967f6355fab39bafd4890b30e09e877b48357d'] Removing build 90967f6355fab39bafd4890b30e09e877b48357d