new version of ncbi-blast+ causes autopkgtest hangs
Affects | Status | Importance | Assigned to | Milestone | |
---|---|---|---|---|---|
ncbi-blast+ (Ubuntu) |
Fix Released
|
Undecided
|
Unassigned |
Bug Description
After updating ncbi-blast+ to 2.11.0 in proposed, both cct and kleborate autopkgtests fail with timeouts. cct hangs consistently at the same place:
[...]
Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output
Performing BLAST search for sequence number 105 (orf_105_
Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output
autopkgtest [15:16:05]: ERROR: timed out on command [...]
This is not trivially reproducible by running the autopkgtest locally. Perhaps this is only reproducible in memory-restricted environments.
tags: | added: update-excuse |
I was unable to reproduce this failure on a memory-restricted arm64 VM in canonistack.