RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '1697922-3360265', '/home/buildd/filecache-default/21e9d7c4b48c9cc80e593feff4ab876bb80e92c4'] Synching the system clock with the buildd NTP service... 18 Apr 08:04:21 ntpdate[23295]: adjust time server 10.211.37.1 offset -0.000978 sec Unpacking chroot for build 1697922-3360265 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '1697922-3360265'] Mounting chroot for build 1697922-3360265 RUN: /usr/share/launchpad-buildd/slavebin/apply-ogre-model ['apply-ogre-model', '1697922-3360265', 'universe'] Attempting OGRE for universe in build-1697922-3360265 No OGRE sources.list found. RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '1697922-3360265', 'deb http://ftpmaster.internal/ubuntu lucid main universe'] Overriding sources.list in build-1697922-3360265 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '1697922-3360265'] Updating debian chroot for build 1697922-3360265 Get:1 http://ftpmaster.internal lucid Release.gpg [189B] Get:2 http://ftpmaster.internal lucid Release [57.2kB] Get:3 http://ftpmaster.internal lucid/main Packages [1360kB] Get:4 http://ftpmaster.internal lucid/universe Packages [5307kB] Fetched 6725kB in 18s (356kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https base-files bash debconf debconf-i18n dpkg dpkg-dev initramfs-tools initramfs-tools-bin libc-bin libc-dev-bin libc6 libc6-dev libdrm-intel1 libdrm-nouveau1 libdrm-radeon1 libdrm2 libglib2.0-0 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libldap-2.4-2 libpam-modules libpam-runtime libpam0g libplymouth2 libudev0 linux-libc-dev locales module-init-tools mountall plymouth python2.6-minimal udev 36 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 23.7MB of archives. After this operation, 16.4kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpam-modules base-files bash dpkg debconf-i18n debconf libc-dev-bin libc6-dev libc-bin libc6 linux-libc-dev apt libpam-runtime libpam0g python2.6-minimal libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libldap-2.4-2 libglib2.0-0 module-init-tools udev libudev0 initramfs-tools initramfs-tools-bin libdrm2 libdrm-intel1 libdrm-nouveau1 libdrm-radeon1 plymouth libplymouth2 mountall locales apt-transport-https dpkg-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ lucid/main libpam-modules 1.1.1-2ubuntu2 [351kB] Get:2 http://ftpmaster.internal/ubuntu/ lucid/main base-files 5.0.0ubuntu18 [80.2kB] Get:3 http://ftpmaster.internal/ubuntu/ lucid/main bash 4.1-2ubuntu2 [626kB] Get:4 http://ftpmaster.internal/ubuntu/ lucid/main dpkg 1.15.5.6ubuntu4 [2175kB] Get:5 http://ftpmaster.internal/ubuntu/ lucid/main debconf-i18n 1.5.28ubuntu4 [178kB] Get:6 http://ftpmaster.internal/ubuntu/ lucid/main debconf 1.5.28ubuntu4 [148kB] Get:7 http://ftpmaster.internal/ubuntu/ lucid/main libc-dev-bin 2.11.1-0ubuntu6 [212kB] Get:8 http://ftpmaster.internal/ubuntu/ lucid/main libc6-dev 2.11.1-0ubuntu6 [2407kB] Get:9 http://ftpmaster.internal/ubuntu/ lucid/main libc-bin 2.11.1-0ubuntu6 [683kB] Get:10 http://ftpmaster.internal/ubuntu/ lucid/main libc6 2.11.1-0ubuntu6 [4016kB] Get:11 http://ftpmaster.internal/ubuntu/ lucid/main linux-libc-dev 2.6.32-21.32 [769kB] Get:12 http://ftpmaster.internal/ubuntu/ lucid/main apt 0.7.25.3ubuntu7 [1773kB] Get:13 http://ftpmaster.internal/ubuntu/ lucid/main libpam-runtime 1.1.1-2ubuntu2 [115kB] Get:14 http://ftpmaster.internal/ubuntu/ lucid/main libpam0g 1.1.1-2ubuntu2 [119kB] Get:15 http://ftpmaster.internal/ubuntu/ lucid/main python2.6-minimal 2.6.5-1ubuntu6 [1330kB] Get:16 http://ftpmaster.internal/ubuntu/ lucid/main libk5crypto3 1.8.1+dfsg-2 [104kB] Get:17 http://ftpmaster.internal/ubuntu/ lucid/main libgssapi-krb5-2 1.8.1+dfsg-2 [111kB] Get:18 http://ftpmaster.internal/ubuntu/ lucid/main libkrb5-3 1.8.1+dfsg-2 [319kB] Get:19 http://ftpmaster.internal/ubuntu/ lucid/main libkrb5support0 1.8.1+dfsg-2 [41.5kB] Get:20 http://ftpmaster.internal/ubuntu/ lucid/main libldap-2.4-2 2.4.21-0ubuntu4 [188kB] Get:21 http://ftpmaster.internal/ubuntu/ lucid/main libglib2.0-0 2.24.0-0ubuntu2 [1004kB] Get:22 http://ftpmaster.internal/ubuntu/ lucid/main module-init-tools 3.11.1-2ubuntu1 [94.7kB] Get:23 http://ftpmaster.internal/ubuntu/ lucid/main udev 151-11 [409kB] Get:24 http://ftpmaster.internal/ubuntu/ lucid/main libudev0 151-11 [117kB] Get:25 http://ftpmaster.internal/ubuntu/ lucid/main initramfs-tools 0.92bubuntu74 [87.3kB] Get:26 http://ftpmaster.internal/ubuntu/ lucid/main initramfs-tools-bin 0.92bubuntu74 [51.6kB] Get:27 http://ftpmaster.internal/ubuntu/ lucid/main libdrm2 2.4.18-1ubuntu3 [409kB] Get:28 http://ftpmaster.internal/ubuntu/ lucid/main libdrm-intel1 2.4.18-1ubuntu3 [409kB] Get:29 http://ftpmaster.internal/ubuntu/ lucid/main libdrm-nouveau1 2.4.18-1ubuntu3 [400kB] Get:30 http://ftpmaster.internal/ubuntu/ lucid/main libdrm-radeon1 2.4.18-1ubuntu3 [398kB] Get:31 http://ftpmaster.internal/ubuntu/ lucid/main plymouth 0.8.2-2 [106kB] Get:32 http://ftpmaster.internal/ubuntu/ lucid/main libplymouth2 0.8.2-2 [83.5kB] Get:33 http://ftpmaster.internal/ubuntu/ lucid/main mountall 2.12 [50.7kB] Get:34 http://ftpmaster.internal/ubuntu/ lucid/main locales 2.11+git20100304-3 [3552kB] Get:35 http://ftpmaster.internal/ubuntu/ lucid/main apt-transport-https 0.7.25.3ubuntu7 [81.3kB] Get:36 http://ftpmaster.internal/ubuntu/ lucid/main dpkg-dev 1.15.5.6ubuntu4 [653kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 23.7MB in 2s (8658kB/s) (Reading database ... 13244 files and directories currently installed.) Preparing to replace libpam-modules 1.1.1-2ubuntu1 (using .../libpam-modules_1.1.1-2ubuntu2_armel.deb) ... Unpacking replacement libpam-modules ... Setting up libpam-modules (1.1.1-2ubuntu2) ... (Reading database ... 13245 files and directories currently installed.) Preparing to replace base-files 5.0.0ubuntu14 (using .../base-files_5.0.0ubuntu18_armel.deb) ... Unpacking replacement base-files ... Setting up base-files (5.0.0ubuntu18) ... (Reading database ... 13244 files and directories currently installed.) Preparing to replace bash 4.1-2ubuntu1 (using .../bash_4.1-2ubuntu2_armel.deb) ... Unpacking replacement bash ... Setting up bash (4.1-2ubuntu2) ... Installing new version of config file /etc/bash.bashrc ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode. (Reading database ... 13244 files and directories currently installed.) Preparing to replace dpkg 1.15.5.6ubuntu3 (using .../dpkg_1.15.5.6ubuntu4_armel.deb) ... Unpacking replacement dpkg ... Setting up dpkg (1.15.5.6ubuntu4) ... (Reading database ... 13244 files and directories currently installed.) Preparing to replace debconf-i18n 1.5.28ubuntu3 (using .../debconf-i18n_1.5.28ubuntu4_all.deb) ... Unpacking replacement debconf-i18n ... Setting up debconf-i18n (1.5.28ubuntu4) ... (Reading database ... 13244 files and directories currently installed.) Preparing to replace debconf 1.5.28ubuntu3 (using .../debconf_1.5.28ubuntu4_all.deb) ... Unpacking replacement debconf ... Setting up debconf (1.5.28ubuntu4) ... (Reading database ... 13244 files and directories currently installed.) Preparing to replace libc-dev-bin 2.11.1-0ubuntu5 (using .../libc-dev-bin_2.11.1-0ubuntu6_armel.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libc6-dev 2.11.1-0ubuntu5 (using .../libc6-dev_2.11.1-0ubuntu6_armel.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-bin 2.11.1-0ubuntu5 (using .../libc-bin_2.11.1-0ubuntu6_armel.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.11.1-0ubuntu6) ... Installing new version of config file /etc/gai.conf ... (Reading database ... 13244 files and directories currently installed.) Preparing to replace libc6 2.11.1-0ubuntu5 (using .../libc6_2.11.1-0ubuntu6_armel.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.11.1-0ubuntu6) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13244 files and directories currently installed.) Preparing to replace linux-libc-dev 2.6.32-19.28 (using .../linux-libc-dev_2.6.32-21.32_armel.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace apt 0.7.25.3ubuntu6 (using .../apt_0.7.25.3ubuntu7_armel.deb) ... Unpacking replacement apt ... Setting up apt (0.7.25.3ubuntu7) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13244 files and directories currently installed.) Preparing to replace libpam-runtime 1.1.1-2ubuntu1 (using .../libpam-runtime_1.1.1-2ubuntu2_all.deb) ... Unpacking replacement libpam-runtime ... Setting up libpam-runtime (1.1.1-2ubuntu2) ... (Reading database ... 13244 files and directories currently installed.) Preparing to replace libpam0g 1.1.1-2ubuntu1 (using .../libpam0g_1.1.1-2ubuntu2_armel.deb) ... Unpacking replacement libpam0g ... Setting up libpam0g (1.1.1-2ubuntu2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13244 files and directories currently installed.) Preparing to replace python2.6-minimal 2.6.5-1ubuntu4 (using .../python2.6-minimal_2.6.5-1ubuntu6_armel.deb) ... Unpacking replacement python2.6-minimal ... Setting up python2.6-minimal (2.6.5-1ubuntu6) ... (Reading database ... 13244 files and directories currently installed.) Preparing to replace libk5crypto3 1.8+dfsg~alpha1-7ubuntu1 (using .../libk5crypto3_1.8.1+dfsg-2_armel.deb) ... Unpacking replacement libk5crypto3 ... Preparing to replace libgssapi-krb5-2 1.8+dfsg~alpha1-7ubuntu1 (using .../libgssapi-krb5-2_1.8.1+dfsg-2_armel.deb) ... Unpacking replacement libgssapi-krb5-2 ... Preparing to replace libkrb5-3 1.8+dfsg~alpha1-7ubuntu1 (using .../libkrb5-3_1.8.1+dfsg-2_armel.deb) ... Unpacking replacement libkrb5-3 ... Preparing to replace libkrb5support0 1.8+dfsg~alpha1-7ubuntu1 (using .../libkrb5support0_1.8.1+dfsg-2_armel.deb) ... Unpacking replacement libkrb5support0 ... Preparing to replace libldap-2.4-2 2.4.21-0ubuntu3 (using .../libldap-2.4-2_2.4.21-0ubuntu4_armel.deb) ... Unpacking replacement libldap-2.4-2 ... Preparing to replace libglib2.0-0 2.24.0-0ubuntu1 (using .../libglib2.0-0_2.24.0-0ubuntu2_armel.deb) ... Unpacking replacement libglib2.0-0 ... Preparing to replace module-init-tools 3.11.1-2 (using .../module-init-tools_3.11.1-2ubuntu1_armel.deb) ... Unpacking replacement module-init-tools ... Preparing to replace udev 151-8 (using .../archives/udev_151-11_armel.deb) ... Adding `local diversion of /sbin/udevadm to /sbin/udevadm.upgrade' Unpacking replacement udev ... Preparing to replace libudev0 151-8 (using .../libudev0_151-11_armel.deb) ... Unpacking replacement libudev0 ... Preparing to replace initramfs-tools 0.92bubuntu71 (using .../initramfs-tools_0.92bubuntu74_all.deb) ... Unpacking replacement initramfs-tools ... Preparing to replace initramfs-tools-bin 0.92bubuntu71 (using .../initramfs-tools-bin_0.92bubuntu74_armel.deb) ... Unpacking replacement initramfs-tools-bin ... Preparing to replace libdrm2 2.4.18-1ubuntu2 (using .../libdrm2_2.4.18-1ubuntu3_armel.deb) ... Unpacking replacement libdrm2 ... Preparing to replace libdrm-intel1 2.4.18-1ubuntu2 (using .../libdrm-intel1_2.4.18-1ubuntu3_armel.deb) ... Unpacking replacement libdrm-intel1 ... Preparing to replace libdrm-nouveau1 2.4.18-1ubuntu2 (using .../libdrm-nouveau1_2.4.18-1ubuntu3_armel.deb) ... Unpacking replacement libdrm-nouveau1 ... Preparing to replace libdrm-radeon1 2.4.18-1ubuntu2 (using .../libdrm-radeon1_2.4.18-1ubuntu3_armel.deb) ... Unpacking replacement libdrm-radeon1 ... Preparing to replace plymouth 0.8.1-4ubuntu1 (using .../plymouth_0.8.2-2_armel.deb) ... Unpacking replacement plymouth ... Preparing to replace libplymouth2 0.8.1-4ubuntu1 (using .../libplymouth2_0.8.2-2_armel.deb) ... Unpacking replacement libplymouth2 ... Preparing to replace mountall 2.10 (using .../mountall_2.12_armel.deb) ... Unpacking replacement mountall ... Preparing to replace locales 2.11+git20100304-2 (using .../locales_2.11+git20100304-3_all.deb) ... Unpacking replacement locales ... Preparing to replace apt-transport-https 0.7.25.3ubuntu6 (using .../apt-transport-https_0.7.25.3ubuntu7_armel.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace dpkg-dev 1.15.5.6ubuntu3 (using .../dpkg-dev_1.15.5.6ubuntu4_all.deb) ... Unpacking replacement dpkg-dev ... Setting up libc-dev-bin (2.11.1-0ubuntu6) ... Setting up linux-libc-dev (2.6.32-21.32) ... Setting up libc6-dev (2.11.1-0ubuntu6) ... Setting up libkrb5support0 (1.8.1+dfsg-2) ... Setting up libk5crypto3 (1.8.1+dfsg-2) ... Setting up libkrb5-3 (1.8.1+dfsg-2) ... Setting up libgssapi-krb5-2 (1.8.1+dfsg-2) ... Setting up libldap-2.4-2 (2.4.21-0ubuntu4) ... Setting up libglib2.0-0 (2.24.0-0ubuntu2) ... Setting up module-init-tools (3.11.1-2ubuntu1) ... Installing new version of config file /etc/modprobe.d/blacklist-framebuffer.conf ... Setting up libudev0 (151-11) ... Setting up initramfs-tools-bin (0.92bubuntu74) ... Setting up libdrm2 (2.4.18-1ubuntu3) ... Setting up libdrm-intel1 (2.4.18-1ubuntu3) ... Setting up libdrm-nouveau1 (2.4.18-1ubuntu3) ... Setting up libdrm-radeon1 (2.4.18-1ubuntu3) ... Setting up libplymouth2 (0.8.2-2) ... Setting up locales (2.11+git20100304-3) ... Setting up apt-transport-https (0.7.25.3ubuntu7) ... Setting up dpkg-dev (1.15.5.6ubuntu4) ... Setting up initramfs-tools (0.92bubuntu74) ... update-initramfs: deferring update (trigger activated) Setting up udev (151-11) ... Removing `local diversion of /sbin/udevadm to /sbin/udevadm.upgrade' update-initramfs: deferring update (trigger activated) Setting up mountall (2.12) ... Installing new version of config file /etc/init/mounted-tmp.conf ... Installing new version of config file /etc/init/mounted-varrun.conf ... Installing new version of config file /etc/init/mounted-dev.conf ... Setting up plymouth (0.8.2-2) ... Installing new version of config file /etc/init/plymouth-stop.conf ... update-initramfs: deferring update (trigger activated) Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '1697922-3360265', 'lucid', '--nolog', '--batch', '--archive=ubuntu', '--dist=lucid', '--purpose=PRIMARY', '--comp=universe', 'mummer_3.22~dfsg-2.dsc'] Initiating build 1697922-3360265 with 0 processor cores. Automatic build of mummer_3.22~dfsg-2 on satinash by sbuild/armel 1.170.5 Build started at 20100418-0807 ****************************************************************************** mummer_3.22~dfsg-2.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: quilt, debhelper (>= 7.0.50), texlive-latex-base, texlive-latex-recommended, texlive-fonts-recommended Checking for already installed source dependencies... quilt: missing debhelper: missing texlive-latex-base: missing texlive-latex-recommended: missing texlive-fonts-recommended: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install quilt debhelper texlive-latex-base texlive-latex-recommended texlive-fonts-recommended Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils diffstat file fontconfig-config gettext gettext-base groff-base html2text intltool-debian libcroco3 libexpat1 libfontconfig1 libfreetype6 libice6 libjpeg62 libkpathsea5 liblcms1 libmagic1 libpoppler5 libsm6 libx11-6 libx11-data libxau6 libxaw7 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxt6 luatex man-db mime-support po-debconf tex-common texlive-base texlive-binaries texlive-common texlive-doc-base ttf-dejavu-core ucf x11-common Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff liblcms-utils less www-browser libmail-box-perl procmail graphviz perl-tk ghostscript xpdf-reader pdf-viewer gv postscript-viewer Recommended packages: curl wget lynx cvs xml-core texlive-luatex libmail-sendmail-perl lmodern texlive-fonts-recommended-doc tipa texlive-latex-base-doc texlive-latex-recommended-doc prosper latex-beamer latex-xcolor The following NEW packages will be installed: bsdmainutils debhelper diffstat file fontconfig-config gettext gettext-base groff-base html2text intltool-debian libcroco3 libexpat1 libfontconfig1 libfreetype6 libice6 libjpeg62 libkpathsea5 liblcms1 libmagic1 libpoppler5 libsm6 libx11-6 libx11-data libxau6 libxaw7 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxt6 luatex man-db mime-support po-debconf quilt tex-common texlive-base texlive-binaries texlive-common texlive-doc-base texlive-fonts-recommended texlive-latex-base texlive-latex-recommended ttf-dejavu-core ucf x11-common 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 53.3MB of archives. After this operation, 143MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! x11-common libmagic1 file mime-support ucf bsdmainutils gettext-base groff-base libexpat1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxext6 libxml2 man-db html2text libcroco3 gettext intltool-debian po-debconf debhelper diffstat ttf-dejavu-core fontconfig-config libfreetype6 libfontconfig1 libice6 libjpeg62 libkpathsea5 liblcms1 libpoppler5 libsm6 libxt6 libxmu6 libxpm4 libxaw7 luatex quilt tex-common texlive-common texlive-doc-base texlive-binaries texlive-base texlive-fonts-recommended texlive-latex-base texlive-latex-recommended Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ lucid/main x11-common 1:7.5+5ubuntu1 [308kB] Get:2 http://ftpmaster.internal/ubuntu/ lucid/main libmagic1 5.03-5ubuntu1 [389kB] Get:3 http://ftpmaster.internal/ubuntu/ lucid/main file 5.03-5ubuntu1 [47.4kB] Get:4 http://ftpmaster.internal/ubuntu/ lucid/main mime-support 3.48-1ubuntu1 [34.6kB] Get:5 http://ftpmaster.internal/ubuntu/ lucid/main ucf 3.0025 [68.1kB] Get:6 http://ftpmaster.internal/ubuntu/ lucid/main bsdmainutils 8.0.1ubuntu1 [191kB] Get:7 http://ftpmaster.internal/ubuntu/ lucid/main gettext-base 0.17-8ubuntu3 [69.1kB] Get:8 http://ftpmaster.internal/ubuntu/ lucid/main groff-base 1.20.1-7 [1050kB] Get:9 http://ftpmaster.internal/ubuntu/ lucid/main libexpat1 2.0.1-7ubuntu1 [112kB] Get:10 http://ftpmaster.internal/ubuntu/ lucid/main libxau6 1:1.0.5-1 [13.5kB] Get:11 http://ftpmaster.internal/ubuntu/ lucid/main libxdmcp6 1:1.0.3-1 [17.1kB] Get:12 http://ftpmaster.internal/ubuntu/ lucid/main libxcb1 1.5-2 [39.5kB] Get:13 http://ftpmaster.internal/ubuntu/ lucid/main libx11-data 2:1.3.2-1ubuntu3 [220kB] Get:14 http://ftpmaster.internal/ubuntu/ lucid/main libx11-6 2:1.3.2-1ubuntu3 [770kB] Get:15 http://ftpmaster.internal/ubuntu/ lucid/main libxext6 2:1.1.1-2 [37.7kB] Get:16 http://ftpmaster.internal/ubuntu/ lucid/main libxml2 2.7.6.dfsg-1ubuntu1 [767kB] Get:17 http://ftpmaster.internal/ubuntu/ lucid/main man-db 2.5.7-2 [1041kB] Get:18 http://ftpmaster.internal/ubuntu/ lucid/main html2text 1.3.2a-14build1 [94.2kB] Get:19 http://ftpmaster.internal/ubuntu/ lucid/main libcroco3 0.6.2-1 [89.5kB] Get:20 http://ftpmaster.internal/ubuntu/ lucid/main gettext 0.17-8ubuntu3 [1697kB] Get:21 http://ftpmaster.internal/ubuntu/ lucid/main intltool-debian 0.35.0+20060710.1 [31.6kB] Get:22 http://ftpmaster.internal/ubuntu/ lucid/main po-debconf 1.0.16 [224kB] Get:23 http://ftpmaster.internal/ubuntu/ lucid/main debhelper 7.4.15ubuntu1 [461kB] Get:24 http://ftpmaster.internal/ubuntu/ lucid/main diffstat 1.47-1build1 [23.0kB] Get:25 http://ftpmaster.internal/ubuntu/ lucid/main ttf-dejavu-core 2.30-2 [1436kB] Get:26 http://ftpmaster.internal/ubuntu/ lucid/main fontconfig-config 2.8.0-2ubuntu1 [205kB] Get:27 http://ftpmaster.internal/ubuntu/ lucid/main libfreetype6 2.3.11-1ubuntu2 [382kB] Get:28 http://ftpmaster.internal/ubuntu/ lucid/main libfontconfig1 2.8.0-2ubuntu1 [270kB] Get:29 http://ftpmaster.internal/ubuntu/ lucid/main libice6 2:1.0.6-1 [45.9kB] Get:30 http://ftpmaster.internal/ubuntu/ lucid/main libjpeg62 6b-15ubuntu1 [79.9kB] Get:31 http://ftpmaster.internal/ubuntu/ lucid/main libkpathsea5 2009-5 [127kB] Get:32 http://ftpmaster.internal/ubuntu/ lucid/main liblcms1 1.18.dfsg-1ubuntu2 [97.2kB] Get:33 http://ftpmaster.internal/ubuntu/ lucid/main libpoppler5 0.12.4-0ubuntu4 [643kB] Get:34 http://ftpmaster.internal/ubuntu/ lucid/main libsm6 2:1.1.1-1 [23.2kB] Get:35 http://ftpmaster.internal/ubuntu/ lucid/main libxt6 1:1.0.7-1 [156kB] Get:36 http://ftpmaster.internal/ubuntu/ lucid/main libxmu6 2:1.0.5-1 [48.2kB] Get:37 http://ftpmaster.internal/ubuntu/ lucid/main libxpm4 1:3.5.8-1 [38.5kB] Get:38 http://ftpmaster.internal/ubuntu/ lucid/main libxaw7 2:1.0.7-1 [172kB] Get:39 http://ftpmaster.internal/ubuntu/ lucid/main luatex 0.50.0-1 [2134kB] Get:40 http://ftpmaster.internal/ubuntu/ lucid/main quilt 0.48-5 [318kB] Get:41 http://ftpmaster.internal/ubuntu/ lucid/main tex-common 2.06 [725kB] Get:42 http://ftpmaster.internal/ubuntu/ lucid/main texlive-common 2009-7 [99.0kB] Get:43 http://ftpmaster.internal/ubuntu/ lucid/main texlive-doc-base 2009-2 [1339kB] Get:44 http://ftpmaster.internal/ubuntu/ lucid/main texlive-binaries 2009-5 [7462kB] Get:45 http://ftpmaster.internal/ubuntu/ lucid/main texlive-base 2009-7 [14.7MB] Get:46 http://ftpmaster.internal/ubuntu/ lucid/main texlive-fonts-recommended 2009-7 [7165kB] Get:47 http://ftpmaster.internal/ubuntu/ lucid/main texlive-latex-base 2009-7 [1335kB] Get:48 http://ftpmaster.internal/ubuntu/ lucid/main texlive-latex-recommended 2009-7 [6587kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 53.3MB in 6s (8450kB/s) Selecting previously deselected package x11-common. (Reading database ... 13244 files and directories currently installed.) Unpacking x11-common (from .../x11-common_1%3a7.5+5ubuntu1_all.deb) ... Selecting previously deselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.03-5ubuntu1_armel.deb) ... Selecting previously deselected package file. Unpacking file (from .../file_5.03-5ubuntu1_armel.deb) ... Selecting previously deselected package mime-support. Unpacking mime-support (from .../mime-support_3.48-1ubuntu1_all.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../archives/ucf_3.0025_all.deb) ... Moving old data out of the way Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.0.1ubuntu1_armel.deb) ... Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.17-8ubuntu3_armel.deb) ... Selecting previously deselected package groff-base. 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Selecting previously deselected package texlive-latex-recommended. Unpacking texlive-latex-recommended (from .../texlive-latex-recommended_2009-7_all.deb) ... Setting up x11-common (1:7.5+5ubuntu1) ... Setting up libmagic1 (5.03-5ubuntu1) ... Setting up file (5.03-5ubuntu1) ... Setting up mime-support (3.48-1ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up ucf (3.0025) ... Setting up bsdmainutils (8.0.1ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. Setting up gettext-base (0.17-8ubuntu3) ... Setting up groff-base (1.20.1-7) ... Setting up libexpat1 (2.0.1-7ubuntu1) ... Setting up libxau6 (1:1.0.5-1) ... Setting up libxdmcp6 (1:1.0.3-1) ... Setting up libxcb1 (1.5-2) ... Setting up libx11-data (2:1.3.2-1ubuntu3) ... Setting up libx11-6 (2:1.3.2-1ubuntu3) ... Setting up libxext6 (2:1.1.1-2) ... Setting up libxml2 (2.7.6.dfsg-1ubuntu1) ... Setting up man-db (2.5.7-2) ... Building database of manual pages ... Setting up html2text (1.3.2a-14build1) ... Setting up libcroco3 (0.6.2-1) ... Setting up gettext (0.17-8ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16) ... Setting up debhelper (7.4.15ubuntu1) ... Setting up diffstat (1.47-1build1) ... Setting up ttf-dejavu-core (2.30-2) ... Setting up fontconfig-config (2.8.0-2ubuntu1) ... Setting up libfreetype6 (2.3.11-1ubuntu2) ... Setting up libfontconfig1 (2.8.0-2ubuntu1) ... Setting up libice6 (2:1.0.6-1) ... Setting up libjpeg62 (6b-15ubuntu1) ... Setting up libkpathsea5 (2009-5) ... Setting up liblcms1 (1.18.dfsg-1ubuntu2) ... Setting up libpoppler5 (0.12.4-0ubuntu4) ... Setting up libsm6 (2:1.1.1-1) ... Setting up libxt6 (1:1.0.7-1) ... Setting up libxmu6 (2:1.0.5-1) ... Setting up libxpm4 (1:3.5.8-1) ... Setting up libxaw7 (2:1.0.7-1) ... Setting up luatex (0.50.0-1) ... texlive-base is not ready, cannot create formats Setting up quilt (0.48-5) ... Setting up tex-common (2.06) ... Creating config file /etc/texmf/texmf.d/05TeXMF.cnf with new version Creating config file /etc/texmf/texmf.d/15Plain.cnf with new version Creating config file /etc/texmf/texmf.d/45TeXinputs.cnf with new version Creating config file /etc/texmf/texmf.d/55Fonts.cnf with new version Creating config file /etc/texmf/texmf.d/65BibTeX.cnf with new version Creating config file /etc/texmf/texmf.d/75DviPS.cnf with new version Creating config file /etc/texmf/texmf.d/85Misc.cnf with new version Creating config file /etc/texmf/texmf.d/90TeXDoc.cnf with new version Creating config file /etc/texmf/texmf.d/95NonPath.cnf with new version Creating config file /etc/texmf/updmap.d/00updmap.cfg with new version Creating config file /etc/texmf/texmf.cnf with new version Running mktexlsr. This may take some time... done. texlive-base is not ready, delaying updmap-sys call texlive-base is not ready, skipping fmtutil-sys --all call Setting up texlive-common (2009-7) ... Setting up texlive-doc-base (2009-2) ... Setting up texlive-binaries (2009-5) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode. update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode. Building format(s) --refresh. This may take some time... done. Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Setting up texlive-base (2009-7) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-base.cnf. This may take some time... done. Processing triggers for tex-common ... Running updmap-sys. This may take some time... done. Building formats --byhyphen /var/lib/texmf/tex/generic/config/language.def. This may take some time... done. Setting up texlive-fonts-recommended (2009-7) ... Setting up texlive-latex-base (2009-7) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf. This may take some time... done. Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Setting up texlive-latex-recommended (2009-7) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.11.1-0ubuntu6 make_3.81-7ubuntu1 dpkg-dev_1.15.5.6ubuntu4 g++-4.4_4.4.3-4ubuntu5 gcc-4.4_4.4.3-4ubuntu5 binutils_2.20.1-3ubuntu4 libstdc++6_4.4.3-4ubuntu5 libstdc++6-4.4-dev_4.4.3-4ubuntu5 ------------------------------------------------------------------------------ gpgv: Signature made Wed Mar 24 21:28:25 2010 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./mummer_3.22~dfsg-2.dsc dpkg-source: info: extracting mummer in mummer-3.22~dfsg dpkg-source: info: unpacking mummer_3.22~dfsg.orig.tar.gz dpkg-source: info: applying mummer_3.22~dfsg-2.diff.gz dpkg-buildpackage: set CFLAGS to default value: -g -O2 dpkg-buildpackage: set CPPFLAGS to default value: dpkg-buildpackage: set LDFLAGS to default value: -Wl,-Bsymbolic-functions dpkg-buildpackage: set FFLAGS to default value: -g -O2 dpkg-buildpackage: set CXXFLAGS to default value: -g -O2 dpkg-buildpackage: source package mummer dpkg-buildpackage: source version 3.22~dfsg-2 dpkg-buildpackage: host architecture armel /usr/bin/fakeroot debian/rules clean QUILT_PATCHES=debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 No patch removed rm -rf .pc debian/stamp-patched dh clean dh_testdir dh_auto_clean csh: not found make[1]: Entering directory `/build/buildd/mummer-3.22~dfsg' rm -f *~ core* cd /build/buildd/mummer-3.22~dfsg/src/kurtz; make clean make[2]: Entering directory `/build/buildd/mummer-3.22~dfsg/src/kurtz' rm -f *~ cd libbasedir; make clean make[3]: Entering directory `/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir' rm -f *.splint rm -f *.[oa] *.dbg.o *.inc *.aux *.dvi *.log *~ make[3]: Leaving directory `/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir' cd streesrc; make clean make[3]: Entering directory `/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc' rm -f *.splint rm -f *.[aox] *~ make[3]: Leaving directory `/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc' cd mm3src; make clean make[3]: Entering directory `/build/buildd/mummer-3.22~dfsg/src/kurtz/mm3src' rm -f *.splint rm -f *.[ox] shit[123] *~ cd /build/buildd/mummer-3.22~dfsg; rm -f maxmat3.x maxmat3.dbg.x mummer make[3]: Leaving directory `/build/buildd/mummer-3.22~dfsg/src/kurtz/mm3src' make[2]: Leaving directory `/build/buildd/mummer-3.22~dfsg/src/kurtz' cd /build/buildd/mummer-3.22~dfsg/src/tigr; make clean make[2]: Entering directory `/build/buildd/mummer-3.22~dfsg/src/tigr' rm -f *.o *~ cd /build/buildd/mummer-3.22~dfsg; rm -f annotate combineMUMs delta-filter gaps mgaps postnuc postpro prenuc prepro repeat-match show-aligns show-coords show-tiling show-snps show-diff cd /build/buildd/mummer-3.22~dfsg/aux_bin; rm -f annotate combineMUMs delta-filter gaps mgaps postnuc postpro prenuc prepro repeat-match show-aligns show-coords show-tiling show-snps show-diff make[2]: Leaving directory `/build/buildd/mummer-3.22~dfsg/src/tigr' cd /build/buildd/mummer-3.22~dfsg/scripts; make clean csh: not found make[2]: Entering directory `/build/buildd/mummer-3.22~dfsg/scripts' rm -f *~ cd /build/buildd/mummer-3.22~dfsg; rm -f exact-tandems mapview mummerplot nucmer promer run-mummer1 run-mummer3 nucmer2xfig dnadiff make[2]: Leaving directory `/build/buildd/mummer-3.22~dfsg/scripts' cd /build/buildd/mummer-3.22~dfsg/docs; make clean make[2]: Entering directory `/build/buildd/mummer-3.22~dfsg/docs' rm -f *.dvi *.aux *.log *.out *~ maxmat3man.pdf make[2]: Leaving directory `/build/buildd/mummer-3.22~dfsg/docs' make[1]: Leaving directory `/build/buildd/mummer-3.22~dfsg' dh_clean debian/rules build QUILT_PATCHES=debian/patches quilt --quiltrc /dev/null push -a || test $? = 2 Applying patch 10_install_dirs.patch patching file scripts/Makefile Applying patch 02at_docs_web.diff patching file docs/web/index.html Now at patch 02at_docs_web.diff touch debian/stamp-patched # ... # Code to run the package test suite. /usr/bin/fakeroot debian/rules binary-arch # ... # Code to run the package test suite. dh_testdir dh_testroot dh_prep dh_installdirs [ -d /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin ] || mkdir -p /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin [ -d /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/lib/mummer ] || mkdir -p /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/lib/mummer /usr/bin/make BIN_DIR=/build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin AUX_BIN_DIR=/build/buildd/mummer-3.22~dfsg/debian/tmp/usr/lib/mummer \ FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer \ FINAL_SCRIPT_DIR=/usr/share/perl5/ \ CFLAGS="-Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc" csh: not found make[1]: Entering directory `/build/buildd/mummer-3.22~dfsg' cd /build/buildd/mummer-3.22~dfsg/src/kurtz; /usr/bin/make mummer make[2]: Entering directory `/build/buildd/mummer-3.22~dfsg/src/kurtz' cd libbasedir; /usr/bin/make libbase.a make[3]: Entering directory `/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir' /usr/bin/gcc -Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc -c -o cleanMUMcand.o cleanMUMcand.c /usr/bin/gcc -Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc -c -o clock.o clock.c /usr/bin/gcc -Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc -c -o mapfile.o mapfile.c /usr/bin/gcc -Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc -c -o multiseq.o multiseq.c /usr/bin/gcc -Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc -c -o procopt.o procopt.c /usr/bin/gcc -Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc -c -o safescpy.o safescpy.c /usr/bin/gcc -Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc -c -o seterror.o seterror.c /usr/bin/gcc -Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc -c -o space.o space.c ar sruv libbase.a cleanMUMcand.o clock.o mapfile.o multiseq.o procopt.o safescpy.o seterror.o space.o ar: creating libbase.a a - cleanMUMcand.o a - clock.o a - mapfile.o a - multiseq.o a - procopt.o a - safescpy.o a - seterror.o a - space.o make[3]: Leaving directory `/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir' cd streesrc; /usr/bin/make libstree.a make[3]: Entering directory `/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc' /usr/bin/gcc -Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -c -o construct.o construct.c /usr/bin/gcc -Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -c -o access.o access.c /usr/bin/gcc -Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -c -o scanpref.o scanpref.c /usr/bin/gcc -Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -c -o linkloc.o linkloc.c /usr/bin/gcc -Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -c -o depthtab.o depthtab.c /usr/bin/gcc -Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -c -o ex2leav.o ex2leav.c /usr/bin/gcc -Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -c -o dfs.o dfs.c /usr/bin/gcc -Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -c -o overmax.o overmax.c /usr/bin/gcc -Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -c -o oversucc.o oversucc.c /usr/bin/gcc -Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -c -o addleafcount.o addleafcount.c /usr/bin/gcc -Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -c -o iterator.o iterator.c ar sruv libstree.a construct.o access.o scanpref.o linkloc.o depthtab.o ex2leav.o dfs.o overmax.o oversucc.o addleafcount.o iterator.o ar: creating libstree.a a - construct.o a - access.o a - scanpref.o a - linkloc.o a - depthtab.o a - ex2leav.o a - dfs.o a - overmax.o a - oversucc.o a - addleafcount.o a - iterator.o make[3]: Leaving directory `/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc' cd mm3src; /usr/bin/make mummer make[3]: Entering directory `/build/buildd/mummer-3.22~dfsg/src/kurtz/mm3src' /usr/bin/gcc -Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -c -o maxmat3.o maxmat3.c /usr/bin/gcc -Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -c -o maxmatopt.o maxmatopt.c /usr/bin/gcc -Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -c -o maxmatinp.o maxmatinp.c /usr/bin/gcc -Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -c -o findmumcand.o findmumcand.c /usr/bin/gcc -Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -c -o findmaxmat.o findmaxmat.c /usr/bin/gcc -Wall -g -O2 -DSTREEHUGE -I/build/buildd/mummer-3.22~dfsg/src/kurtz/libbasedir -I/build/buildd/mummer-3.22~dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -c -o procmaxmat.o procmaxmat.c /usr/bin/gcc maxmat3.o maxmatopt.o maxmatinp.o findmumcand.o findmaxmat.o procmaxmat.o ../streesrc/libstree.a ../libbasedir/libbase.a \ -o /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/mummer; chmod 755 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/mummer make[3]: Leaving directory `/build/buildd/mummer-3.22~dfsg/src/kurtz/mm3src' make[2]: Leaving directory `/build/buildd/mummer-3.22~dfsg/src/kurtz' cd /build/buildd/mummer-3.22~dfsg/src/tigr; /usr/bin/make all make[2]: Entering directory `/build/buildd/mummer-3.22~dfsg/src/tigr' /usr/bin/g++ -O3 tigrinc.cc -c -o tigrinc.o tigrinc.cc: In function 'int Read_String(FILE*, char*&, long int&, char*, int)': tigrinc.cc:335: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result /usr/bin/g++ -O3 annotate.cc tigrinc.o -o /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/annotate; chmod 755 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/annotate /usr/bin/g++ -O3 combineMUMs.cc tigrinc.o -o /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/combineMUMs; chmod 755 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/combineMUMs combineMUMs.cc:109: warning: deprecated conversion from string constant to 'char*' combineMUMs.cc:135: warning: deprecated conversion from string constant to 'char*' combineMUMs.cc:145: warning: deprecated conversion from string constant to 'char*' combineMUMs.cc: In function 'int Read_String(FILE*, char**, long int*, char*)': combineMUMs.cc:1481: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result /usr/bin/g++ -O3 delta.cc -c -o delta.o /usr/bin/g++ -O3 delta-filter.cc tigrinc.o delta.o -o /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/delta-filter; chmod 755 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/delta-filter /usr/bin/g++ -O3 gaps.cc tigrinc.o -o /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/gaps; chmod 755 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/gaps /usr/bin/g++ -O3 mgaps.cc tigrinc.o -o /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/mgaps; chmod 755 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/mgaps mgaps.cc: In function 'int Process_Cluster(Match_t*, int, char*)': mgaps.cc:533: warning: deprecated conversion from string constant to 'char*' mgaps.cc: In function 'void Process_Matches(Match_t*, int, char*)': mgaps.cc:620: warning: deprecated conversion from string constant to 'char*' /usr/bin/g++ -O3 sw_align.cc -c -o sw_align.o /usr/bin/g++ -O3 postnuc.cc tigrinc.o sw_align.o -o /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/lib/mummer/postnuc; chmod 755 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/lib/mummer/postnuc /usr/bin/g++ -O3 translate.cc -c -o translate.o /usr/bin/g++ -O3 postpro.cc tigrinc.o sw_align.o translate.o -o /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/lib/mummer/postpro; chmod 755 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/lib/mummer/postpro /usr/bin/g++ -O3 prenuc.cc tigrinc.o -o /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/lib/mummer/prenuc; chmod 755 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/lib/mummer/prenuc /usr/bin/g++ -O3 prepro.cc tigrinc.o translate.o -o /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/lib/mummer/prepro; chmod 755 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/lib/mummer/prepro /usr/bin/g++ -O3 repeat-match.cc tigrinc.o -o /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/repeat-match; chmod 755 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/repeat-match /usr/bin/g++ -O3 show-aligns.cc tigrinc.o translate.o delta.o -o /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/show-aligns; chmod 755 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/show-aligns /usr/bin/g++ -O3 show-coords.cc tigrinc.o delta.o -o /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/show-coords; chmod 755 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/show-coords show-coords.cc: In function 'void printBtab(std::vector >)': show-coords.cc:799: warning: deprecated conversion from string constant to 'char*' show-coords.cc:801: warning: deprecated conversion from string constant to 'char*' show-coords.cc:803: warning: deprecated conversion from string constant to 'char*' /usr/bin/g++ -O3 show-tiling.cc tigrinc.o delta.o -o /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/show-tiling; chmod 755 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/show-tiling /usr/bin/g++ -O3 show-snps.cc tigrinc.o translate.o delta.o -o /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/show-snps; chmod 755 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/show-snps /usr/bin/g++ -O3 show-diff.cc tigrinc.o delta.o -o /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/show-diff; chmod 755 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/show-diff make[2]: Leaving directory `/build/buildd/mummer-3.22~dfsg/src/tigr' cd /build/buildd/mummer-3.22~dfsg/scripts; /usr/bin/make all csh: not found make[2]: Entering directory `/build/buildd/mummer-3.22~dfsg/scripts' cp -a ../debian/sh-replacement-scripts/exact-tandems /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin chmod 755 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/exact-tandems /bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ mapview.pl > /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/mapview chmod 755 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/mapview /bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ mummerplot.pl > /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/mummerplot chmod 755 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/mummerplot /bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ nucmer.pl > /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/nucmer chmod 755 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/nucmer /bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ promer.pl > /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/promer chmod 755 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/promer cp -a ../debian/sh-replacement-scripts/run-mummer1 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin chmod 755 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/run-mummer1 cp -a ../debian/sh-replacement-scripts/run-mummer3 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin chmod 755 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/run-mummer3 /bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ nucmer2xfig.pl > /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/nucmer2xfig chmod 755 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/nucmer2xfig /bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ dnadiff.pl > /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/dnadiff chmod 755 /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/dnadiff make[2]: Leaving directory `/build/buildd/mummer-3.22~dfsg/scripts' make[1]: Leaving directory `/build/buildd/mummer-3.22~dfsg' /usr/bin/make -C docs make[1]: Entering directory `/build/buildd/mummer-3.22~dfsg/docs' pdflatex maxmat3man This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian) restricted \write18 enabled. entering extended mode (./maxmat3man.tex LaTeX2e <2009/09/24> Babel and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, loaded. (/usr/share/texmf-texlive/tex/latex/base/article.cls Document Class: article 2007/10/19 v1.4h Standard LaTeX document class (/usr/share/texmf-texlive/tex/latex/base/size12.clo)) (/usr/share/texmf-texlive/tex/latex/ltxmisc/a4wide.sty (/usr/share/texmf-texlive/tex/latex/ntgclass/a4.sty)) (/usr/share/texmf-texlive/tex/latex/base/alltt.sty) (/usr/share/texmf-texlive/tex/latex/tools/xspace.sty) (/usr/share/texmf-texlive/tex/latex/psnfss/times.sty) (./skaff.sty) (./optionman.sty) No file maxmat3man.aux. (/usr/share/texmf-texlive/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texmf-texlive/tex/latex/psnfss/omsptm.fd) (/usr/share/texmf-texlive/tex/latex/psnfss/ot1pcr.fd) LaTeX Warning: Reference `SecBasicNotions' on page 1 undefined on input line 34 . [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] LaTeX Warning: Reference `SecBasicNotions' on page 2 undefined on input line 10 2. [2] [3] [4] [5] [6] (./maxmat3man.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ){/usr/share/texmf-texlive/fonts/enc/dvips/base/8r.enc} Output written on maxmat3man.pdf (6 pages, 142944 bytes). Transcript written on maxmat3man.log. pdflatex maxmat3man This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian) restricted \write18 enabled. entering extended mode (./maxmat3man.tex LaTeX2e <2009/09/24> Babel and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, loaded. (/usr/share/texmf-texlive/tex/latex/base/article.cls Document Class: article 2007/10/19 v1.4h Standard LaTeX document class (/usr/share/texmf-texlive/tex/latex/base/size12.clo)) (/usr/share/texmf-texlive/tex/latex/ltxmisc/a4wide.sty (/usr/share/texmf-texlive/tex/latex/ntgclass/a4.sty)) (/usr/share/texmf-texlive/tex/latex/base/alltt.sty) (/usr/share/texmf-texlive/tex/latex/tools/xspace.sty) (/usr/share/texmf-texlive/tex/latex/psnfss/times.sty) (./skaff.sty) (./optionman.sty) (./maxmat3man.aux) (/usr/share/texmf-texlive/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texmf-texlive/tex/latex/psnfss/omsptm.fd) (/usr/share/texmf-texlive/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fonts/m ap/pdftex/updmap/pdftex.map}] [2] [3] [4] [5] [6] (./maxmat3man.aux) ){/usr/sha re/texmf-texlive/fonts/enc/dvips/base/8r.enc} Output written on maxmat3man.pdf (6 pages, 142260 bytes). Transcript written on maxmat3man.log. make[1]: Leaving directory `/build/buildd/mummer-3.22~dfsg/docs' /usr/bin/make check csh: not found make[1]: Entering directory `/build/buildd/mummer-3.22~dfsg' ERROR: 'csh' C-shell not found check complete make[1]: Leaving directory `/build/buildd/mummer-3.22~dfsg' mv /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/annotate /build/buildd/mummer-3.22~dfsg/debian/tmp/usr/bin/mummer-annotate dh_install touch build-stamp dh binary-arch dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_installcatalogs -a dh_installcron -a dh_installdebconf -a dh_installemacsen -a dh_installifupdown -a dh_installinfo -a dh_installinit -a Duplicate specification "O=s" for option "O" dh_installmenu -a dh_installmime -a dh_installmodules -a dh_installlogcheck -a dh_installlogrotate -a dh_installpam -a dh_installppp -a dh_installudev -a dh_installwm -a dh_installxfonts -a dh_bugfiles -a dh_lintian -a dh_gconf -a dh_icons -a dh_perl -a dh_usrlocal -a dh_link -a debian/rules override_dh_compress make[1]: Entering directory `/build/buildd/mummer-3.22~dfsg' dh_compress -Xpdf make[1]: Leaving directory `/build/buildd/mummer-3.22~dfsg' dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform armel: mummer dh_strip debug symbol extraction: packages to act on: mummer dh_strip debug symbol extraction: ignored packages: WARNING: not running pkgbinarymangler for this package, as requested dpkg-deb: building package `mummer-dbgsym' in `../mummer-dbgsym_3.22~dfsg-2_armel.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/mummer/usr/bin/combineMUMs contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-diff contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-coords contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-snps contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/lib/mummer/prepro contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/bin/mgaps contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/bin/mummer-annotate contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/bin/delta-filter contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-tiling contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/bin/gaps contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/bin/repeat-match contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-aligns contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/lib/mummer/postpro contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/lib/mummer/prenuc contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/mummer/usr/lib/mummer/postnuc contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: unused substitution variable ${perl:Depends} dh_md5sums -a dh_builddeb -a pkgstriptranslations: processing control file: ./debian/mummer/DEBIAN/control, package mummer, directory ./debian/mummer pkgstriptranslations: mummer does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " dpkg-deb: warning: 'debian/mummer/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warnings about the control file(s) dpkg-deb: building package `mummer' in `../mummer_3.22~dfsg-2_armel.deb'. dpkg-genchanges -B -mUbuntu/armel Build Daemon >../mummer_3.22~dfsg-2_armel.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20100418-0817 Publishing debug debs. chroot-autobuild/build/buildd/mummer_3.22~dfsg-2_armel.deb: new debian package, version 2.0. size 419804 bytes: control archive= 1882 bytes. 1176 bytes, 22 lines control 1937 bytes, 34 lines md5sums Package: mummer Version: 3.22~dfsg-2 Architecture: armel Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1056 Depends: libc6 (>= 2.7), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 4.4.0), perl, gawk Section: science Priority: optional Homepage: http://mummer.sourceforge.net/ Description: Efficient sequence alignment of full genomes MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences. chroot-autobuild/build/buildd/mummer_3.22~dfsg-2_armel.deb: drwxr-xr-x root/root 0 2010-04-18 08:16 ./ drwxr-xr-x root/root 0 2010-04-18 08:16 ./usr/ drwxr-xr-x root/root 0 2010-04-18 08:17 ./usr/bin/ -rwxr-xr-x root/root 34384 2010-04-18 08:17 ./usr/bin/mummer -rwxr-xr-x root/root 14036 2010-04-18 08:17 ./usr/bin/mgaps -rwxr-xr-x root/root 29757 2010-04-18 08:16 ./usr/bin/mapview -rwxr-xr-x root/root 79804 2010-04-18 08:17 ./usr/bin/show-aligns -rwxr-xr-x root/root 75712 2010-04-18 08:17 ./usr/bin/show-tiling -rwxr-xr-x root/root 766 2010-04-18 08:12 ./usr/bin/exact-tandems -rwxr-xr-x root/root 26821 2010-04-18 08:16 ./usr/bin/dnadiff -rwxr-xr-x root/root 9900 2010-04-18 08:17 ./usr/bin/gaps -rwxr-xr-x root/root 11552 2010-04-18 08:16 ./usr/bin/nucmer -rwxr-xr-x root/root 67512 2010-04-18 08:17 ./usr/bin/show-coords -rwxr-xr-x root/root 49694 2010-04-18 08:16 ./usr/bin/mummerplot -rwxr-xr-x root/root 71636 2010-04-18 08:17 ./usr/bin/show-snps -rwxr-xr-x root/root 1115 2010-04-18 08:12 ./usr/bin/run-mummer3 -rwxr-xr-x root/root 22212 2010-04-18 08:17 ./usr/bin/repeat-match -rwxr-xr-x root/root 981 2010-04-18 08:12 ./usr/bin/run-mummer1 -rwxr-xr-x root/root 51116 2010-04-18 08:17 ./usr/bin/delta-filter -rwxr-xr-x root/root 38684 2010-04-18 08:17 ./usr/bin/combineMUMs -rwxr-xr-x root/root 5884 2010-04-18 08:16 ./usr/bin/nucmer2xfig -rwxr-xr-x root/root 14056 2010-04-18 08:17 ./usr/bin/mummer-annotate -rwxr-xr-x root/root 11898 2010-04-18 08:16 ./usr/bin/promer -rwxr-xr-x root/root 59292 2010-04-18 08:17 ./usr/bin/show-diff drwxr-xr-x root/root 0 2010-04-18 08:12 ./usr/lib/ drwxr-xr-x root/root 0 2010-04-18 08:17 ./usr/lib/mummer/ -rw-r--r-- root/root 760 2009-09-21 20:48 ./usr/lib/mummer/tandem-repeat.awk -rwxr-xr-x root/root 9904 2010-04-18 08:17 ./usr/lib/mummer/prenuc -rwxr-xr-x root/root 67308 2010-04-18 08:17 ./usr/lib/mummer/postpro -rwxr-xr-x root/root 59112 2010-04-18 08:17 ./usr/lib/mummer/postnuc -rwxr-xr-x root/root 18100 2010-04-18 08:17 ./usr/lib/mummer/prepro drwxr-xr-x root/root 0 2010-04-18 08:16 ./usr/share/ drwxr-xr-x root/root 0 2010-04-18 08:16 ./usr/share/perl5/ -rw-r--r-- root/root 54266 2009-09-21 20:48 ./usr/share/perl5/Foundation.pm drwxr-xr-x root/root 0 2010-04-18 08:16 ./usr/share/doc/ drwxr-xr-x root/root 0 2010-04-18 08:17 ./usr/share/doc/mummer/ -rw-r--r-- root/root 327 2009-09-21 20:48 ./usr/share/doc/mummer/ACKNOWLEDGEMENTS -rw-r--r-- root/root 207 2010-04-18 08:12 ./usr/share/doc/mummer/README.Debian -rw-r--r-- root/root 1374 2009-09-21 20:48 ./usr/share/doc/mummer/changelog.gz -rw-r--r-- root/root 1990 2010-04-18 08:12 ./usr/share/doc/mummer/changelog.Debian.gz -rw-r--r-- root/root 1410 2010-04-18 08:12 ./usr/share/doc/mummer/copyright -rw-r--r-- root/root 11466 2009-09-21 20:48 ./usr/share/doc/mummer/README.gz drwxr-xr-x root/root 0 2010-04-18 08:16 ./usr/share/man/ drwxr-xr-x root/root 0 2010-04-18 08:17 ./usr/share/man/man1/ -rw-r--r-- root/root 6256 2010-04-18 08:16 ./usr/share/man/man1/mummer.1.gz lrwxrwxrwx root/root 0 2010-04-18 08:17 ./usr/share/man/man1/nucmer2xfig.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2010-04-18 08:17 ./usr/share/man/man1/mapview.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2010-04-18 08:17 ./usr/share/man/man1/mummer-annotate.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2010-04-18 08:17 ./usr/share/man/man1/show-coords.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2010-04-18 08:17 ./usr/share/man/man1/show-aligns.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2010-04-18 08:17 ./usr/share/man/man1/mgaps.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2010-04-18 08:17 ./usr/share/man/man1/run-mummer1.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2010-04-18 08:17 ./usr/share/man/man1/run-mummer3.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2010-04-18 08:17 ./usr/share/man/man1/combineMUMs.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2010-04-18 08:17 ./usr/share/man/man1/gaps.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2010-04-18 08:17 ./usr/share/man/man1/exact-tandems.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2010-04-18 08:17 ./usr/share/man/man1/show-tiling.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2010-04-18 08:17 ./usr/share/man/man1/delta-filter.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2010-04-18 08:17 ./usr/share/man/man1/show-snps.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2010-04-18 08:17 ./usr/share/man/man1/nucmer.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2010-04-18 08:17 ./usr/share/man/man1/dnadiff.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2010-04-18 08:17 ./usr/share/man/man1/repeat-match.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2010-04-18 08:17 ./usr/share/man/man1/mummerplot.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2010-04-18 08:17 ./usr/share/man/man1/promer.1.gz -> mummer.1.gz mummer_3.22~dfsg-2_armel.changes: Format: 1.8 Date: Wed, 24 Mar 2010 17:10:43 +0000 Source: mummer Binary: mummer mummer-doc Architecture: armel Version: 3.22~dfsg-2 Distribution: lucid Urgency: low Maintainer: Ubuntu/armel Build Daemon Changed-By: Andreas Tille Description: mummer - Efficient sequence alignment of full genomes mummer-doc - Documentation for MUMmer Closes: 575105 Changes: mummer (3.22~dfsg-2) unstable; urgency=low . [ Andreas Tille ] * Make sure scripts will use the installation path instead of the temporary build path Closes: #575105 * Make real use of debian/sh-replacement-scripts and drop csh (build-)dependency * incremented Standards-Version to reflect concordance with Debian Policy 3.8.4 (no changes needed). * install tandem-repeat.awk which was lacking from installation previousely . [ Charles Plessy ] * Updated upstream-metadata.yaml to use simple key=value form instead of BibTeX entry Checksums-Sha1: 5f0fd7a734b75346c0eb583b80c2901e60d05d42 419804 mummer_3.22~dfsg-2_armel.deb Checksums-Sha256: e37aafe2fef020f32bdb11b6940614d5dbc357073da351407374a68f62070e2d 419804 mummer_3.22~dfsg-2_armel.deb Files: 0225f6280bbba97807106a88501e7b32 419804 science optional mummer_3.22~dfsg-2_armel.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/mummer-3.22~dfsg ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge libxmu6 groff-base libx11-data mime-support fontconfig-config ttf-dejavu-core gettext file libxaw7 libxt6 libxdmcp6 texlive-base libxpm4 libkpathsea5 texlive-common x11-common texlive-doc-base po-debconf quilt libcroco3 libxml2 liblcms1 libfreetype6 libjpeg62 texlive-latex-recommended man-db libice6 intltool-debian libpoppler5 libxcb1 tex-common luatex texlive-latex-base ucf html2text diffstat gettext-base debhelper libfontconfig1 libsm6 libmagic1 libxext6 texlive-binaries libexpat1 bsdmainutils libxau6 texlive-fonts-recommended libx11-6 (Reading database ... 22960 files and directories currently installed.) Removing quilt ... Purging configuration files for quilt ... Removing texlive-latex-recommended ... Purging configuration files for texlive-latex-recommended ... Removing texlive-latex-base ... Purging configuration files for texlive-latex-base ... Removing diffstat ... Removing debhelper ... Removing texlive-fonts-recommended ... Purging configuration files for texlive-fonts-recommended ... Removing file ... Purging configuration files for file ... Removing texlive-base ... Purging configuration files for texlive-base ... Removing texlive-doc-base ... Purging configuration files for texlive-doc-base ... Removing po-debconf ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. Removing intltool-debian ... Removing luatex ... Removing html2text ... Purging configuration files for html2text ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing texlive-binaries ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing groff-base ... Purging configuration files for groff-base ... Removing mime-support ... Purging configuration files for mime-support ... Removing gettext ... Removing libxaw7 ... Purging configuration files for libxaw7 ... Removing libxpm4 ... Purging configuration files for libxpm4 ... Removing libkpathsea5 ... Purging configuration files for libkpathsea5 ... Removing texlive-common ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing libpoppler5 ... Purging configuration files for libpoppler5 ... Removing tex-common ... Purging configuration files for tex-common ... Removing gettext-base ... Removing libfontconfig1 ... Purging configuration files for libfontconfig1 ... Removing libexpat1 ... Purging configuration files for libexpat1 ... Removing libxmu6 ... Purging configuration files for libxmu6 ... Removing fontconfig-config ... Purging configuration files for fontconfig-config ... Removing ttf-dejavu-core ... Removing libxt6 ... Purging configuration files for libxt6 ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing liblcms1 ... Purging configuration files for liblcms1 ... Removing libfreetype6 ... Purging configuration files for libfreetype6 ... Removing libjpeg62 ... Removing ucf ... Purging configuration files for ucf ... Removing libsm6 ... Purging configuration files for libsm6 ... Removing libxext6 ... Purging configuration files for libxext6 ... Removing libx11-6 ... Purging configuration files for libx11-6 ... Removing libx11-data ... Removing libice6 ... Purging configuration files for libice6 ... Removing libxcb1 ... Purging configuration files for libxcb1 ... Removing libxau6 ... Purging configuration files for libxau6 ... Removing libxdmcp6 ... Purging configuration files for libxdmcp6 ... Removing x11-common ... Purging configuration files for x11-common ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20100418-0818 Build needed 00:05:02, 12012k disk space Can't open average time db /var/debbuild/avg-build-times Can't open average space db /var/debbuild/avg-build-space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '1697922-3360265'] Scanning for processes to kill in build /home/buildd/build-1697922-3360265/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '1697922-3360265'] Unmounting chroot for build 1697922-3360265... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '1697922-3360265'] Removing build 1697922-3360265