minimap2 2.24+dfsg-3build1 source package in Ubuntu
Changelog
minimap2 (2.24+dfsg-3build1) lunar; urgency=medium * No-change rebuild with Python 3.11 only -- Graham Inggs <email address hidden> Mon, 20 Mar 2023 05:42:11 +0000
Upload details
- Uploaded by:
- Graham Inggs
- Uploaded to:
- Lunar
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Mantic | release | universe | misc | |
| Lunar | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| minimap2_2.24+dfsg.orig.tar.xz | 190.5 KiB | bd8e76cad8e4d4ea19844707bf4f2a825de10372dc6c8ba15426ef9c20854b0f |
| minimap2_2.24+dfsg-3build1.debian.tar.xz | 11.1 KiB | 7ad37e8777bdedb9b2b57d10d98a6f017a99b9027476104d2dcedc2f034055d1 |
| minimap2_2.24+dfsg-3build1.dsc | 2.3 KiB | 0c47f973aee2723ae6ac540e0747299594d167bc9f1087e535888d97d6abf892 |
Available diffs
Binary packages built by this source
- libminimap2-dev: development headers for libminimap
Minimap2 is a versatile sequence alignment program that aligns DNA or
mRNA sequences against a large reference database. Typical use cases
include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
human genome; (2) finding overlaps between long reads with error rate up
to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
or Direct RNA reads against a reference genome; (4) aligning Illumina
single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full-
genome alignment between two closely related species with divergence
below ~15%.
.
This package contains the C library headers for using minimap in custom tools,
along with a static library.
- minimap2: versatile pairwise aligner for genomic and spliced nucleotide sequences
Minimap2 is a versatile sequence alignment program that aligns DNA or
mRNA sequences against a large reference database. Typical use cases
include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
human genome; (2) finding overlaps between long reads with error rate up
to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
or Direct RNA reads against a reference genome; (4) aligning Illumina
single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full-
genome alignment between two closely related species with divergence
below ~15%.
.
For ~10kb noisy reads sequences, minimap2 is tens of times faster than
mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It
is more accurate on simulated long reads and produces biologically
meaningful alignment ready for downstream analyses. For >100bp Illumina
short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and
as accurate on simulated data. Detailed evaluations are available from
the minimap2 paper or the preprint.
- minimap2-dbgsym: debug symbols for minimap2
- python3-mappy: Python3 interface minimap2
Minimap2 is a versatile sequence alignment program that aligns DNA or
mRNA sequences against a large reference database. Typical use cases
include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
human genome; (2) finding overlaps between long reads with error rate up
to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
or Direct RNA reads against a reference genome; (4) aligning Illumina
single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full-
genome alignment between two closely related species with divergence
below ~15%.
.
This package contains the Python3 interface for using minimap2.
- python3-mappy-dbgsym: debug symbols for python3-mappy
