minimap2 2.17+dfsg-2 source package in Ubuntu
Changelog
minimap2 (2.17+dfsg-2) unstable; urgency=medium
[ Michael R. Crusoe ]
* Team upload.
* Add support for more architectures using the SIMD Everyhere library
Closes: #922620
* Standards-Version: 4.4.1
[ Andreas Tille ]
* Set upstream metadata fields: Bug-Database, Bug-Submit.
-- Michael R. Crusoe <email address hidden> Sun, 12 Jan 2020 18:22:11 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Focal | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| minimap2_2.17+dfsg-2.dsc | 2.0 KiB | 1869ba8d83faecc3f157ddb4fb4535ca861780f1fa33366b97d5c434d56bdf70 |
| minimap2_2.17+dfsg.orig.tar.xz | 166.0 KiB | cf24d57c2823048caf910d6a4ca8243e26c7e48aaf91b2aee27033ffbb13d3ae |
| minimap2_2.17+dfsg-2.debian.tar.xz | 51.1 KiB | e8bd0070234ef35566fa7bdef3bd268fda9cb63e81cd9469f995cb22fc54938d |
Available diffs
- diff from 2.17+dfsg-1 to 2.17+dfsg-2 (64.1 KiB)
No changes file available.
Binary packages built by this source
- minimap2: versatile pairwise aligner for genomic and spliced nucleotide sequences
Minimap2 is a versatile sequence alignment program that aligns DNA or
mRNA sequences against a large reference database. Typical use cases
include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
human genome; (2) finding overlaps between long reads with error rate up
to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
or Direct RNA reads against a reference genome; (4) aligning Illumina
single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full-
genome alignment between two closely related species with divergence
below ~15%.
.
For ~10kb noisy reads sequences, minimap2 is tens of times faster than
mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It
is more accurate on simulated long reads and produces biologically
meaningful alignment ready for downstream analyses. For >100bp Illumina
short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and
as accurate on simulated data. Detailed evaluations are available from
the minimap2 paper or the preprint.
- minimap2-dbgsym: debug symbols for minimap2
