minimap2 2.17+dfsg-1 source package in Ubuntu


minimap2 (2.17+dfsg-1) unstable; urgency=medium

  * New upstream version
  * debhelper-compat 12
  * Standards-Version: 4.4.0

 -- Andreas Tille <email address hidden>  Thu, 01 Aug 2019 15:23:40 +0200

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Uploaded by:
Debian Med on 2019-08-02
Uploaded to:
Original maintainer:
Debian Med
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Focal release on 2019-10-18 universe misc
Eoan release on 2019-08-02 universe misc


File Size SHA-256 Checksum
minimap2_2.17+dfsg-1.dsc 2.0 KiB 815cda69bf54756d733f48fc1a75943884577e732e23683097f69edb6a7db001
minimap2_2.17+dfsg.orig.tar.xz 166.0 KiB cf24d57c2823048caf910d6a4ca8243e26c7e48aaf91b2aee27033ffbb13d3ae
minimap2_2.17+dfsg-1.debian.tar.xz 5.1 KiB d113d7f46820feb4c75a1ecc98061d341428ca47d2b5167c986191b4372daa3f

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Binary packages built by this source

minimap2: versatile pairwise aligner for genomic and spliced nucleotide sequences

 Minimap2 is a versatile sequence alignment program that aligns DNA or
 mRNA sequences against a large reference database. Typical use cases
 include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
 human genome; (2) finding overlaps between long reads with error rate up
 to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
 or Direct RNA reads against a reference genome; (4) aligning Illumina
 single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full-
 genome alignment between two closely related species with divergence
 below ~15%.
 For ~10kb noisy reads sequences, minimap2 is tens of times faster than
 mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It
 is more accurate on simulated long reads and produces biologically
 meaningful alignment ready for downstream analyses. For >100bp Illumina
 short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and
 as accurate on simulated data. Detailed evaluations are available from
 the minimap2 paper or the preprint.

minimap2-dbgsym: debug symbols for minimap2