mindthegap 2.3.0-2 source package in Ubuntu

Changelog

mindthegap (2.3.0-2) unstable; urgency=medium

  * Team upload.
  * d/control: Only build on architectures supported by gatb-core.
    (Closes: #1031531)
  * d/control: Bump Standards-Version to 4.6.2; no changes needed.

 -- Sergio Durigan Junior <email address hidden>  Fri, 17 Feb 2023 17:54:57 -0500

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any-amd64 arm64 mips64el ppc64el ia64 ppc64 riscv64 sparc64 alpha all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Mantic release universe misc
Lunar release universe misc

Downloads

File Size SHA-256 Checksum
mindthegap_2.3.0-2.dsc 2.2 KiB 3695e5cd0286af4fd3d25820834e8e92537842a45f6a0f797478d572f9ebaac8
mindthegap_2.3.0.orig.tar.gz 759.6 KiB 1d886d34bb892079121755c856329155f332e4bc19eaf31b41ce3d0333544ac5
mindthegap_2.3.0-2.debian.tar.xz 7.4 KiB 8d121adedbc745dc3047b68b3e53fbfdfa5085b67287a4461dd2edc26a1b2686

Available diffs

No changes file available.

Binary packages built by this source

mindthegap: performs detection and assembly of DNA insertion variants in NGS read datasets

 Designed to call insertions of any size, whether they are novel or
 duplicated, homozygous or heterozygous in the donor genome. It takes as
 input a set of reads and a reference genome. It outputs two sets of
 FASTA sequences: one is the set of breakpoints of detection insertion
 sites, the other is the set of assembled insertions for each
 breakpoint. MindTheGap can also be used as a genome assembly finishing
 tool. It can fill the gaps between a set of input contigs without any a
 priori on their relative order and orientation. It outputs the results
 in gfa file.

mindthegap-dbgsym: debug symbols for mindthegap
mindthegap-examples: optional scripts and example resources for mindthegap

 Designed to call insertions of any size, whether they are novel or
 duplicated, homozygous or heterozygous in the donor genome. it takes
 as input a set of reads and a reference genome. It outputs two sets
 of FASTA sequences: one is the set of breakpoints of detection
 insertion sites, the other is the set of assembled insertions for
 each breakpoint. MindTheGap can also be used as a genome assembly
 finishing tool. It can fill the gap between a set of input contigs
 without any a priori on their relative order and orientation. It
 outputs the results in gfa file. Please note that this package is
 meant to accommodate the mindthegap package and only acts as example
 to how this package can be utilised.