microbiomeutil 20101212+dfsg1-1 source package in Ubuntu
Changelog
microbiomeutil (20101212+dfsg1-1) unstable; urgency=low * debian/copyright: s/BSD-like/BSD-3-clause/ * Moved debian/upstream to debian/upstream/metadata * cme fix dpkg-control * Cleanup d/rules * Fix build time tests and run these * Add doc-base file * d/watch: add missing repacksuffix * Moved packaging from SVN to Git * Cleaning up log files from past test runs * Add autopkgtest -- Andreas Tille <email address hidden> Wed, 20 Jan 2016 20:15:46 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Low Urgency
See full publishing history Publishing
Series | Published | Component | Section | |
---|---|---|---|---|
Xenial | release | universe | misc |
Downloads
File | Size | SHA-256 Checksum |
---|---|---|
microbiomeutil_20101212+dfsg1-1.dsc | 2.3 KiB | 954931e6927e9bbb3ec72bdd4a9ac5e2acd9b178735f9d8c6d932a9ee55185d5 |
microbiomeutil_20101212+dfsg1.orig.tar.xz | 1.5 MiB | f6e75eb1ccbaca07c862f5e548850bb87c37279678250cd36f5804d673bbd56c |
microbiomeutil_20101212+dfsg1-1.debian.tar.xz | 9.6 KiB | 354adba76bb13c30d10c7b296d77ccea6822dce81f0e5876b38489b9c4987d52 |
Available diffs
- diff from 20101212+dfsg-1 to 20101212+dfsg1-1 (936.1 KiB)
No changes file available.
Binary packages built by this source
- chimeraslayer: detects likely chimeras in PCR amplified DNA
ChimeraSlayer is a chimeric sequence detection utility, compatible with
near-full length Sanger sequences and shorter 454-FLX sequences (~500bp).
.
Chimera Slayer involves the following series of steps that operate to
flag chimeric 16S rRNA sequences:
.
1. the ends of a query sequence are searched against an included
database of reference chimera-free 16S sequences to identify potential
parents of a chimera
2. candidate parents of a chimera are selected as those that form a
branched best scoring alignment to the NAST-formatted query sequence
3. the NAST alignment of the query sequence is improved in a
‘chimera-aware’ profile-based NAST realignment to the selected
reference parent sequences
4. an evolutionary framework is used to flag query sequences found to
exhibit greater sequence homology to an in silico chimera formed
between any two of the selected reference parent sequences.
.
To run Chimera Slayer, you need NAST-formatted sequences generated by
the nast-ier utility.
.
ChimeraSlayer is part of the microbiomeutil suite.
- microbiomeutil: No summary available for microbiomeutil in ubuntu yakkety.
No description available for microbiomeutil in ubuntu yakkety.
- microbiomeutil-data: Reference 16S sequences and NAST-alignments used by microbiomeutil tools
Reference data for tools in the microbiomeutil package. The algorithms
used by the tools chimeraslayer, nast-ier and wigeon are based on
reference data which are provided by this package.
- nast-ier: NAST-based DNA alignment tool
The NAST-iEr alignment utility aligns a single raw nucleotide sequence
against one or more NAST formatted sequences.
.
The alignment algorithm involves global dynamic programming profile
alignment to fixed (NAST-formatted) multiply aligned template sequences
without any end-gap penalty.
.
NAST-iEr is part of the microbiomeutil suite.
- nast-ier-dbgsym: debug symbols for package nast-ier
The NAST-iEr alignment utility aligns a single raw nucleotide sequence
against one or more NAST formatted sequences.
.
The alignment algorithm involves global dynamic programming profile
alignment to fixed (NAST-formatted) multiply aligned template sequences
without any end-gap penalty.
.
NAST-iEr is part of the microbiomeutil suite.
- wigeon: No summary available for wigeon in ubuntu zesty.
No description available for wigeon in ubuntu zesty.