RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux denneed01 3.13.0-8-generic #28-Ubuntu SMP Tue Feb 11 17:58:07 UTC 2014 ppc64le Buildd toolchain package versions: launchpad-buildd_121~0.IS.08.04.0 python-lpbuildd_121~0.IS.08.04.0 dpkg-dev_1.17.5ubuntu4. Syncing the system clock with the buildd NTP service... 20 Feb 06:57:10 ntpdate[30964]: adjust time server 10.211.37.1 offset 0.000230 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-5602762', '/home/buildd/filecache-default/1418c9e5f0eb143d9f77e4665c5b7c89c42011cc'] Unpacking chroot for build PACKAGEBUILD-5602762 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-5602762'] Mounting chroot for build PACKAGEBUILD-5602762 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-5602762', 'deb http://ftpmaster.internal/ubuntu trusty main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-5602762 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-5602762', 'ppc64el'] Updating debian chroot for build PACKAGEBUILD-5602762 Ign http://ftpmaster.internal trusty InRelease Ign http://archive-team.internal trusty InRelease Ign http://ftpmaster.internal trusty InRelease Ign http://archive-team.internal trusty Release.gpg Get:1 http://ftpmaster.internal trusty Release.gpg [933 B] Hit http://archive-team.internal trusty Release Get:2 http://ftpmaster.internal trusty Release.gpg [933 B] Ign http://archive-team.internal trusty/main ppc64el Packages/DiffIndex Get:3 http://ftpmaster.internal trusty Release [58.5 kB] Get:4 http://ftpmaster.internal trusty Release [58.5 kB] Get:5 http://ftpmaster.internal trusty/main ppc64el Packages [1222 kB] Ign http://archive-team.internal trusty/main Translation-en Hit http://archive-team.internal trusty/main ppc64el Packages Get:6 http://ftpmaster.internal trusty/restricted ppc64el Packages [14 B] Get:7 http://ftpmaster.internal trusty/universe ppc64el Packages [4979 kB] Get:8 http://ftpmaster.internal trusty/multiverse ppc64el Packages [81.4 kB] Get:9 http://ftpmaster.internal trusty/main Translation-en [761 kB] Get:10 http://ftpmaster.internal trusty/multiverse Translation-en [102 kB] Get:11 http://ftpmaster.internal trusty/restricted Translation-en [3457 B] Get:12 http://ftpmaster.internal trusty/universe Translation-en [4059 kB] Get:13 http://ftpmaster.internal trusty/main ppc64el Packages [1226 kB] Get:14 http://ftpmaster.internal trusty/restricted ppc64el Packages [14 B] Get:15 http://ftpmaster.internal trusty/universe ppc64el Packages [5005 kB] Get:16 http://ftpmaster.internal trusty/multiverse ppc64el Packages [107 kB] Get:17 http://ftpmaster.internal trusty/main Translation-en [760 kB] Get:18 http://ftpmaster.internal trusty/multiverse Translation-en [102 kB] Get:19 http://ftpmaster.internal trusty/restricted Translation-en [3457 B] Get:20 http://ftpmaster.internal trusty/universe Translation-en [4056 kB] Fetched 22.6 MB in 30s (747 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: base-files cpp-4.8 dash e2fslibs e2fsprogs g++-4.8 gcc-4.8 gcc-4.8-base gcc-4.9-base libasn1-8-heimdal libatomic1 libcomerr2 libgcc-4.8-dev libgcc1 libgomp1 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libitm1 libkrb5-26-heimdal libroken18-heimdal libss2 libstdc++-4.8-dev libstdc++6 libwind0-heimdal linux-libc-dev upstart 29 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 20.1 MB of archives. After this operation, 135 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main base-files ppc64el 7.2ubuntu3 [44.6 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main dash ppc64el 0.5.7-4ubuntu1 [94.5 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main e2fslibs ppc64el 1.42.9-3ubuntu1 [185 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main e2fsprogs ppc64el 1.42.9-3ubuntu1 [662 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main libitm1 ppc64el 4.8.2-16ubuntu1 [28.8 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libgomp1 ppc64el 4.8.2-16ubuntu1 [21.9 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main g++-4.8 ppc64el 4.8.2-16ubuntu1 [6242 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.8 ppc64el 4.8.2-16ubuntu1 [4809 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main cpp-4.8 ppc64el 4.8.2-16ubuntu1 [4425 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main libatomic1 ppc64el 4.8.2-16ubuntu1 [7868 B] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.9-base ppc64el 4.9-20140217-0ubuntu1 [14.3 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main libgcc1 ppc64el 1:4.9-20140217-0ubuntu1 [29.1 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main libstdc++-4.8-dev ppc64el 4.8.2-16ubuntu1 [1087 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main libgcc-4.8-dev ppc64el 4.8.2-16ubuntu1 [245 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.8-base ppc64el 4.8.2-16ubuntu1 [14.8 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main libstdc++6 ppc64el 4.8.2-16ubuntu1 [270 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main libcomerr2 ppc64el 1.42.9-3ubuntu1 [62.4 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main libss2 ppc64el 1.42.9-3ubuntu1 [66.5 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main libroken18-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [39.6 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main libasn1-8-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [132 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main libhcrypto4-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [90.1 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main libheimbase1-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [28.4 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main libwind0-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [47.8 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main libhx509-5-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [97.8 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main libkrb5-26-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [188 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main libheimntlm0-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [15.7 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main libgssapi3-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [83.6 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main upstart ppc64el 1.11-0ubuntu4 [338 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main linux-libc-dev ppc64el 3.13.0-11.31 [753 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.1 MB in 11s (1801 kB/s) (Reading database ... 11450 files and directories currently installed.) Preparing to unpack .../base-files_7.2ubuntu3_ppc64el.deb ... Moving obsolete conffile /etc/update-motd.d/99-footer out of the way... Unpacking base-files (7.2ubuntu3) over (7.2ubuntu1) ... Setting up base-files (7.2ubuntu3) ... Removing obsolete conffile /etc/update-motd.d/99-footer ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../dash_0.5.7-4ubuntu1_ppc64el.deb ... Unpacking dash (0.5.7-4ubuntu1) over (0.5.7-3ubuntu1) ... Setting up dash (0.5.7-4ubuntu1) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.42.9-3ubuntu1_ppc64el.deb ... Unpacking e2fslibs:ppc64el (1.42.9-3ubuntu1) over (1.42.9-2ubuntu1) ... Setting up e2fslibs:ppc64el (1.42.9-3ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.42.9-3ubuntu1_ppc64el.deb ... Unpacking e2fsprogs (1.42.9-3ubuntu1) over (1.42.9-2ubuntu1) ... Setting up e2fsprogs (1.42.9-3ubuntu1) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libitm1_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking libitm1:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../libgomp1_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking libgomp1:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../g++-4.8_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking g++-4.8 (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../gcc-4.8_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking gcc-4.8 (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../cpp-4.8_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking cpp-4.8 (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../libatomic1_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking libatomic1:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../gcc-4.9-base_4.9-20140217-0ubuntu1_ppc64el.deb ... Unpacking gcc-4.9-base:ppc64el (4.9-20140217-0ubuntu1) over (4.9-20140213-0ubuntu2) ... Setting up gcc-4.9-base:ppc64el (4.9-20140217-0ubuntu1) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a4.9-20140217-0ubuntu1_ppc64el.deb ... Unpacking libgcc1:ppc64el (1:4.9-20140217-0ubuntu1) over (1:4.9-20140213-0ubuntu2) ... Setting up libgcc1:ppc64el (1:4.9-20140217-0ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libstdc++-4.8-dev_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking libstdc++-4.8-dev:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../libgcc-4.8-dev_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking libgcc-4.8-dev:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../gcc-4.8-base_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking gcc-4.8-base:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Setting up gcc-4.8-base:ppc64el (4.8.2-16ubuntu1) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libstdc++6_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking libstdc++6:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Setting up libstdc++6:ppc64el (4.8.2-16ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.42.9-3ubuntu1_ppc64el.deb ... Unpacking libcomerr2:ppc64el (1.42.9-3ubuntu1) over (1.42.9-2ubuntu1) ... Setting up libcomerr2:ppc64el (1.42.9-3ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libss2_1.42.9-3ubuntu1_ppc64el.deb ... Unpacking libss2:ppc64el (1.42.9-3ubuntu1) over (1.42.9-2ubuntu1) ... Setting up libss2:ppc64el (1.42.9-3ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libroken18-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libroken18-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libasn1-8-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libasn1-8-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libhcrypto4-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libhcrypto4-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libheimbase1-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libheimbase1-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libwind0-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libwind0-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libhx509-5-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libhx509-5-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libkrb5-26-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libkrb5-26-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libheimntlm0-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libheimntlm0-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libgssapi3-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libgssapi3-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../upstart_1.11-0ubuntu4_ppc64el.deb ... Unpacking upstart (1.11-0ubuntu4) over (1.11-0ubuntu3) ... Preparing to unpack .../linux-libc-dev_3.13.0-11.31_ppc64el.deb ... Unpacking linux-libc-dev:ppc64el (3.13.0-11.31) over (3.13.0-8.28) ... Setting up libitm1:ppc64el (4.8.2-16ubuntu1) ... Setting up libgomp1:ppc64el (4.8.2-16ubuntu1) ... Setting up cpp-4.8 (4.8.2-16ubuntu1) ... Setting up gcc-4.8 (4.8.2-16ubuntu1) ... Setting up libatomic1:ppc64el (4.8.2-16ubuntu1) ... Setting up libgcc-4.8-dev:ppc64el (4.8.2-16ubuntu1) ... Setting up libstdc++-4.8-dev:ppc64el (4.8.2-16ubuntu1) ... Setting up g++-4.8 (4.8.2-16ubuntu1) ... Setting up libroken18-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libasn1-8-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libhcrypto4-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libheimbase1-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libwind0-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libhx509-5-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libkrb5-26-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libheimntlm0-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libgssapi3-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up upstart (1.11-0ubuntu4) ... Setting up linux-libc-dev:ppc64el (3.13.0-11.31) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-5602762', 'ppc64el', 'trusty', '--nolog', '--batch', '--archive=ubuntu', '--dist=trusty', '--purpose=PRIMARY', '--architecture=ppc64el', '--comp=multiverse', 'mgltools-sff_1.5.7~rc1~cvs.20130519-2.dsc'] Initiating build PACKAGEBUILD-5602762 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.13.0-8-generic #28-Ubuntu SMP Tue Feb 11 17:58:07 UTC 2014 ppc64le Automatic build of mgltools-sff_1.5.7~rc1~cvs.20130519-2 on denneed01 by sbuild/ppc64el 1.170.5 Build started at 20140220-0658 ****************************************************************************** mgltools-sff_1.5.7~rc1~cvs.20130519-2.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 8), python-all-dev (>= 2.6), swig (>= 1.3.20), python-numpy, mgltools-bhtree Checking for already installed source dependencies... debhelper: missing python-all-dev: missing swig: missing python-numpy: missing mgltools-bhtree: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper python-all-dev swig python-numpy mgltools-bhtree Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: apparmor-easyprof bsdmainutils dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libblas3 libcroco3 libexpat1 libexpat1-dev libgfortran3 libglib2.0-0 liblapack3 libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.4-minimal libpython3.4-stdlib libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python python-all python-dev python-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-minimal python3.4 python3.4-minimal swig2.0 Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl python-doc python-tk gfortran python-nose python-numpy-dbg python-numpy-doc python2.7-doc binfmt-support python3-doc python3-tk python3.4-doc swig-doc swig-examples swig2.0-examples swig2.0-doc Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: apparmor-easyprof bsdmainutils debhelper dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libblas3 libcroco3 libexpat1 libexpat1-dev libgfortran3 libglib2.0-0 liblapack3 libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.4-minimal libpython3.4-stdlib libssl1.0.0 libunistring0 libxml2 man-db mgltools-bhtree mime-support po-debconf python python-all python-all-dev python-dev python-minimal python-numpy python2.7 python2.7-dev python2.7-minimal python3 python3-minimal python3.4 python3.4-minimal swig swig2.0 0 upgraded, 53 newly installed, 0 to remove and 0 not upgraded. Need to get 21.5 MB of archives. After this operation, 105 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main libexpat1 ppc64el 2.1.0-4ubuntu1 [79.5 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main libmagic1 ppc64el 1:5.14-2ubuntu1 [194 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main libssl1.0.0 ppc64el 1.0.1f-1ubuntu1 [762 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main libasprintf0c2 ppc64el 0.18.3.1-1ubuntu2 [6748 B] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main libglib2.0-0 ppc64el 2.39.90-0ubuntu1 [985 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libpipeline1 ppc64el 1.2.6-2 [22.6 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main libxml2 ppc64el 2.9.1+dfsg1-3ubuntu3 [601 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main groff-base ppc64el 1.22.2-5 [1249 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main bsdmainutils ppc64el 9.0.5ubuntu1 [173 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main man-db ppc64el 2.6.6-1 [847 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main libcroco3 ppc64el 0.6.8-2ubuntu1 [75.4 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main libgfortran3 ppc64el 4.8.2-16ubuntu1 [204 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main libmpdec2 ppc64el 2.4.0-6 [83.9 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main libpython2.7-minimal ppc64el 2.7.6-5 [307 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main mime-support all 3.54ubuntu1 [31.7 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main libpython2.7-stdlib ppc64el 2.7.6-5 [1770 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main libpython2.7 ppc64el 2.7.6-5 [928 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main libexpat1-dev ppc64el 2.1.0-4ubuntu1 [128 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main libpython2.7-dev ppc64el 2.7.6-5 [1597 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.4-minimal ppc64el 3.4~rc1-1build1 [440 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.4-stdlib ppc64el 3.4~rc1-1build1 [1972 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main libunistring0 ppc64el 0.9.3-5ubuntu3 [262 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main python2.7-minimal ppc64el 2.7.6-5 [932 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main python3.4-minimal ppc64el 3.4~rc1-1build1 [1147 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main python3.4 ppc64el 3.4~rc1-1build1 [159 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main python3-minimal ppc64el 3.4~rc1-1 [23.4 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main libpython3-stdlib ppc64el 3.4~rc1-1 [6976 B] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main python3 ppc64el 3.4~rc1-1 [8654 B] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main dh-python all 1.20140128-1ubuntu2 [51.0 kB] Get:30 http://ftpmaster.internal/ubuntu/ trusty/main file ppc64el 1:5.14-2ubuntu1 [19.2 kB] Get:31 http://ftpmaster.internal/ubuntu/ trusty/main gettext-base ppc64el 0.18.3.1-1ubuntu2 [47.2 kB] Get:32 http://ftpmaster.internal/ubuntu/ trusty/main gettext ppc64el 0.18.3.1-1ubuntu2 [840 kB] Get:33 http://ftpmaster.internal/ubuntu/ trusty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:34 http://ftpmaster.internal/ubuntu/ trusty/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:35 http://ftpmaster.internal/ubuntu/ trusty/main apparmor-easyprof all 2.8.0-0ubuntu38 [20.1 kB] Get:36 http://ftpmaster.internal/ubuntu/ trusty/main dh-apparmor all 2.8.0-0ubuntu38 [7286 B] Get:37 http://ftpmaster.internal/ubuntu/ trusty/main debhelper all 9.20131227ubuntu1 [604 kB] Get:38 http://ftpmaster.internal/ubuntu/ trusty/main libblas3 ppc64el 1.2.20110419-7 [141 kB] Get:39 http://ftpmaster.internal/ubuntu/ trusty/main liblapack3 ppc64el 3.5.0-2 [1446 kB] Get:40 http://ftpmaster.internal/ubuntu/ trusty/main libpython-dev ppc64el 2.7.5-5ubuntu3 [7088 B] Get:41 http://ftpmaster.internal/ubuntu/ trusty/main libpython-all-dev ppc64el 2.7.5-5ubuntu3 [998 B] Get:42 http://ftpmaster.internal/ubuntu/ trusty/main libpython-stdlib ppc64el 2.7.5-5ubuntu3 [7020 B] Get:43 http://ftpmaster.internal/ubuntu/ trusty/main python2.7 ppc64el 2.7.6-5 [193 kB] Get:44 http://ftpmaster.internal/ubuntu/ trusty/main python-minimal ppc64el 2.7.5-5ubuntu3 [27.6 kB] Get:45 http://ftpmaster.internal/ubuntu/ trusty/main python ppc64el 2.7.5-5ubuntu3 [133 kB] Get:46 http://ftpmaster.internal/ubuntu/ trusty/main python-numpy ppc64el 1:1.8.0+git20140126-0ubuntu2 [1508 kB] Get:47 http://ftpmaster.internal/ppc64el/ trusty/multiverse mgltools-bhtree ppc64el 1.5.7~rc1~cvs.20130519-1 [49.0 kB] Get:48 http://ftpmaster.internal/ubuntu/ trusty/main python-all ppc64el 2.7.5-5ubuntu3 [978 B] Get:49 http://ftpmaster.internal/ubuntu/ trusty/main python2.7-dev ppc64el 2.7.6-5 [269 kB] Get:50 http://ftpmaster.internal/ubuntu/ trusty/main python-dev ppc64el 2.7.5-5ubuntu3 [1176 B] Get:51 http://ftpmaster.internal/ubuntu/ trusty/main python-all-dev ppc64el 2.7.5-5ubuntu3 [1002 B] Get:52 http://ftpmaster.internal/ubuntu/ trusty/main swig2.0 ppc64el 2.0.11-1ubuntu1 [900 kB] Get:53 http://ftpmaster.internal/ubuntu/ trusty/main swig ppc64el 2.0.11-1ubuntu1 [6286 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 21.5 MB in 26s (808 kB/s) Selecting previously unselected package libexpat1:ppc64el. (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libexpat1_2.1.0-4ubuntu1_ppc64el.deb ... Unpacking libexpat1:ppc64el (2.1.0-4ubuntu1) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../libmagic1_1%3a5.14-2ubuntu1_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.14-2ubuntu1) ... Selecting previously unselected package libssl1.0.0:ppc64el. Preparing to unpack .../libssl1.0.0_1.0.1f-1ubuntu1_ppc64el.deb ... Unpacking libssl1.0.0:ppc64el (1.0.1f-1ubuntu1) ... Selecting previously unselected package libasprintf0c2:ppc64el. Preparing to unpack .../libasprintf0c2_0.18.3.1-1ubuntu2_ppc64el.deb ... Unpacking libasprintf0c2:ppc64el (0.18.3.1-1ubuntu2) ... Selecting previously unselected package libglib2.0-0:ppc64el. Preparing to unpack .../libglib2.0-0_2.39.90-0ubuntu1_ppc64el.deb ... Unpacking libglib2.0-0:ppc64el (2.39.90-0ubuntu1) ... Selecting previously unselected package libpipeline1:ppc64el. 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Preparing to unpack .../python-numpy_1%3a1.8.0+git20140126-0ubuntu2_ppc64el.deb ... Unpacking python-numpy (1:1.8.0+git20140126-0ubuntu2) ... Selecting previously unselected package mgltools-bhtree. Preparing to unpack .../mgltools-bhtree_1.5.7~rc1~cvs.20130519-1_ppc64el.deb ... Unpacking mgltools-bhtree (1.5.7~rc1~cvs.20130519-1) ... Selecting previously unselected package python-all. Preparing to unpack .../python-all_2.7.5-5ubuntu3_ppc64el.deb ... Unpacking python-all (2.7.5-5ubuntu3) ... Selecting previously unselected package python2.7-dev. Preparing to unpack .../python2.7-dev_2.7.6-5_ppc64el.deb ... Unpacking python2.7-dev (2.7.6-5) ... Selecting previously unselected package python-dev. Preparing to unpack .../python-dev_2.7.5-5ubuntu3_ppc64el.deb ... Unpacking python-dev (2.7.5-5ubuntu3) ... Selecting previously unselected package python-all-dev. Preparing to unpack .../python-all-dev_2.7.5-5ubuntu3_ppc64el.deb ... Unpacking python-all-dev (2.7.5-5ubuntu3) ... Selecting previously unselected package swig2.0. Preparing to unpack .../swig2.0_2.0.11-1ubuntu1_ppc64el.deb ... Unpacking swig2.0 (2.0.11-1ubuntu1) ... Selecting previously unselected package swig. Preparing to unpack .../swig_2.0.11-1ubuntu1_ppc64el.deb ... Unpacking swig (2.0.11-1ubuntu1) ... Setting up libexpat1:ppc64el (2.1.0-4ubuntu1) ... Setting up libmagic1:ppc64el (1:5.14-2ubuntu1) ... Setting up libssl1.0.0:ppc64el (1.0.1f-1ubuntu1) ... Setting up libasprintf0c2:ppc64el (0.18.3.1-1ubuntu2) ... Setting up libglib2.0-0:ppc64el (2.39.90-0ubuntu1) ... No schema files found: doing nothing. Setting up libpipeline1:ppc64el (1.2.6-2) ... Setting up libxml2:ppc64el (2.9.1+dfsg1-3ubuntu3) ... Setting up groff-base (1.22.2-5) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.6-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:ppc64el (0.6.8-2ubuntu1) ... Setting up libgfortran3:ppc64el (4.8.2-16ubuntu1) ... Setting up libmpdec2:ppc64el (2.4.0-6) ... Setting up libpython2.7-minimal:ppc64el (2.7.6-5) ... Setting up mime-support (3.54ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libpython2.7-stdlib:ppc64el (2.7.6-5) ... Setting up libpython2.7:ppc64el (2.7.6-5) ... Setting up libexpat1-dev:ppc64el (2.1.0-4ubuntu1) ... Setting up libpython2.7-dev:ppc64el (2.7.6-5) ... Setting up libpython3.4-minimal:ppc64el (3.4~rc1-1build1) ... Setting up libpython3.4-stdlib:ppc64el (3.4~rc1-1build1) ... Setting up libunistring0:ppc64el (0.9.3-5ubuntu3) ... Setting up python2.7-minimal (2.7.6-5) ... Linking and byte-compiling packages for runtime python2.7... Setting up python3.4-minimal (3.4~rc1-1build1) ... Setting up python3.4 (3.4~rc1-1build1) ... Setting up python3-minimal (3.4~rc1-1) ... Setting up libpython3-stdlib:ppc64el (3.4~rc1-1) ... Setting up file (1:5.14-2ubuntu1) ... Setting up gettext-base (0.18.3.1-1ubuntu2) ... Setting up gettext (0.18.3.1-1ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up libblas3 (1.2.20110419-7) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up liblapack3 (3.5.0-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libpython-dev:ppc64el (2.7.5-5ubuntu3) ... Setting up libpython-all-dev:ppc64el (2.7.5-5ubuntu3) ... Setting up libpython-stdlib:ppc64el (2.7.5-5ubuntu3) ... Setting up python2.7 (2.7.6-5) ... Setting up python-minimal (2.7.5-5ubuntu3) ... Setting up python (2.7.5-5ubuntu3) ... Setting up python-numpy (1:1.8.0+git20140126-0ubuntu2) ... Setting up mgltools-bhtree (1.5.7~rc1~cvs.20130519-1) ... Setting up python-all (2.7.5-5ubuntu3) ... Setting up python2.7-dev (2.7.6-5) ... Setting up python-dev (2.7.5-5ubuntu3) ... Setting up python-all-dev (2.7.5-5ubuntu3) ... Setting up swig2.0 (2.0.11-1ubuntu1) ... Setting up swig (2.0.11-1ubuntu1) ... Setting up python3 (3.4~rc1-1) ... running python rtupdate hooks for python3.4... Exception ignored in: > Traceback (most recent call last): File "/usr/lib/python3.4/subprocess.py", line 897, in __del__ TypeError: 'NoneType' object is not callable running python post-rtupdate hooks for python3.4... Setting up dh-python (1.20140128-1ubuntu2) ... Setting up apparmor-easyprof (2.8.0-0ubuntu38) ... Setting up dh-apparmor (2.8.0-0ubuntu38) ... Setting up debhelper (9.20131227ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.18-0ubuntu7 make_3.81-8.2ubuntu3 dpkg-dev_1.17.5ubuntu4 gcc-4.8_4.8.2-16ubuntu1 g++-4.8_4.8.2-16ubuntu1 binutils_2.24-2ubuntu3.1 libstdc++-4.8-dev_4.8.2-16ubuntu1 libstdc++6_4.8.2-16ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Sat Aug 3 15:08:07 2013 UTC using DSA key ID 54B99890 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./mgltools-sff_1.5.7~rc1~cvs.20130519-2.dsc dpkg-source: info: extracting mgltools-sff in mgltools-sff-1.5.7~rc1~cvs.20130519 dpkg-source: info: unpacking mgltools-sff_1.5.7~rc1~cvs.20130519.orig.tar.gz dpkg-source: info: unpacking mgltools-sff_1.5.7~rc1~cvs.20130519-2.debian.tar.gz dpkg-buildpackage: source package mgltools-sff dpkg-buildpackage: source version 1.5.7~rc1~cvs.20130519-2 dpkg-buildpackage: source distribution unstable dpkg-source --before-build mgltools-sff-1.5.7~rc1~cvs.20130519 dpkg-buildpackage: host architecture ppc64el /usr/bin/fakeroot debian/rules clean dh clean --with python2 dh_testdir dh_auto_clean running clean 'build/lib.linux-ppc64le-2.7' does not exist -- can't clean it 'build/bdist.linux-ppc64le' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it debian/rules override_dh_clean make[1]: Entering directory `/build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519' dh_clean find . -name CVS -a -type d| xargs -r rm -r rm -rf build build-stamp debian/Pmv make[1]: Leaving directory `/build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519' debian/rules build-arch dh build-arch --with python2 dh_testdir -a dh_auto_configure -a dh_auto_build -a running build running build_py creating build creating build/lib.linux-ppc64le-2.7 creating build/lib.linux-ppc64le-2.7/sff copying sff/__init__.py -> build/lib.linux-ppc64le-2.7/sff copying sff/__init__.py -> build/lib.linux-ppc64le-2.7/sff copying sff/amber.py -> build/lib.linux-ppc64le-2.7/sff creating build/lib.linux-ppc64le-2.7/sff/Tests copying sff/Tests/__init__.py -> build/lib.linux-ppc64le-2.7/sff/Tests copying sff/Tests/tripepparmdict.py -> build/lib.linux-ppc64le-2.7/sff/Tests copying sff/Tests/p1H_crd.py -> build/lib.linux-ppc64le-2.7/sff/Tests copying sff/Tests/test_dependencies.py -> build/lib.linux-ppc64le-2.7/sff/Tests copying sff/Tests/test.py -> build/lib.linux-ppc64le-2.7/sff/Tests running build_ext building '_prmlib' extension swigging sff/prmlib.i to sff/prmlib_wrap.c swig -python -o sff/prmlib_wrap.c sff/prmlib.i creating build/temp.linux-ppc64le-2.7 creating build/temp.linux-ppc64le-2.7/src creating build/temp.linux-ppc64le-2.7/sff powerpc64le-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/bhtree.c -o build/temp.linux-ppc64le-2.7/src/bhtree.o src/bhtree.c: In function 'generateBHtree': src/bhtree.c:65:3: warning: implicit declaration of function 'malloc' [-Wimplicit-function-declaration] r=(BHtree *)malloc(sizeof(BHtree)); ^ src/bhtree.c:65:15: warning: incompatible implicit declaration of built-in function 'malloc' [enabled by default] r=(BHtree *)malloc(sizeof(BHtree)); ^ src/bhtree.c: In function 'freeBHtree': src/bhtree.c:176:5: warning: implicit declaration of function 'free' [-Wimplicit-function-declaration] for (i=0;iroot->n;i++) free(tree->atom[i]); ^ src/bhtree.c:176:35: warning: incompatible implicit declaration of built-in function 'free' [enabled by default] for (i=0;iroot->n;i++) free(tree->atom[i]); ^ src/bhtree.c:180:3: warning: incompatible implicit declaration of built-in function 'free' [enabled by default] free(tree); ^ src/bhtree.c: In function 'freeBHnode': src/bhtree.c:189:5: warning: incompatible implicit declaration of built-in function 'free' [enabled by default] free(node); ^ src/bhtree.c: In function 'divideBHnode': src/bhtree.c:230:24: warning: incompatible implicit declaration of built-in function 'malloc' [enabled by default] node->left=(BHnode *)malloc(sizeof(BHnode)); ^ src/bhtree.c: In function 'findBHcloseAtoms': src/bhtree.c:369:9: warning: unused variable 'n' [-Wunused-variable] int i,n; ^ powerpc64le-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/binpos.c -o build/temp.linux-ppc64le-2.7/src/binpos.o In file included from src/binpos.c:2:0: src/prm.h:84:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_initCallbacks(); ^ src/prm.h:87:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_cleanup(); ^ src/binpos.c: In function 'openbinpos': src/binpos.c:15:2: warning: implicit declaration of function 'strcmp' [-Wimplicit-function-declaration] if( strcmp( magic, "fxyz" ) != 0 ){ ^ src/binpos.c: In function 'readbinpos': src/binpos.c:32:2: warning: implicit declaration of function 'strncmp' [-Wimplicit-function-declaration] if( 0 == strncmp( n_atomf,"fxyz",4 ) ) { ^ src/binpos.c:33:8: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread( n_atomf, size, 1, fp ); ^ src/binpos.c:29:11: warning: 'n_atomf' is used uninitialized in this function [-Wuninitialized] if( fread( n_atomf, sizeof( int ), 1, fp ) != 1 ) { ^ powerpc64le-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/memutil.c -o build/temp.linux-ppc64le-2.7/src/memutil.o In file included from src/memutil.c:32:0: src/prm.h:84:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_initCallbacks(); ^ src/prm.h:87:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_cleanup(); ^ src/memutil.c:34:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] void nrerror( msg ) ^ src/memutil.c:42:8: warning: function declaration isn't a prototype [-Wstrict-prototypes] float *vector( nl, nh ) ^ src/memutil.c:53:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] int *ivector( nl, nh ) ^ src/memutil.c:64:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] int *ipvector( nl, nh ) ^ src/memutil.c:76:9: warning: function declaration isn't a prototype [-Wstrict-prototypes] float **matrix( nrl, nrh, ncl, nch ) ^ src/memutil.c:104:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] int **imatrix( nrl, nrh, ncl, nch ) ^ src/memutil.c:132:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] void free_vector( v, nl, nh ) ^ src/memutil.c:140:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] void free_ivector( v, nl, nh ) ^ src/memutil.c:158:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] void free_imatrix( m, nrl, nrh, ncl, nch ) ^ src/memutil.c:167:8: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL *Rvector( nl, nh ) ^ src/memutil.c:178:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] void free_Rvector( v, nl, nh ) ^ powerpc64le-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/rand2.c -o build/temp.linux-ppc64le-2.7/src/rand2.o src/rand2.c:55:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] float rand2( idum ) ^ src/rand2.c:96:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] float gauss( mean, sd, idum) ^ powerpc64le-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/conjgrad.c -o build/temp.linux-ppc64le-2.7/src/conjgrad.o In file included from src/conjgrad.c:31:0: src/prm.h:84:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_initCallbacks(); ^ src/prm.h:87:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_cleanup(); ^ In file included from src/conjgrad.c:32:0: src/memutil.h:30:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void nrerror(); ^ src/memutil.h:31:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] float *vector(); ^ src/memutil.h:32:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] int *ivector(); ^ src/memutil.h:33:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] int *ipvector(); ^ src/memutil.h:34:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] float **matrix(); ^ src/memutil.h:35:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] int **imatrix(); ^ src/memutil.h:36:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void free_vector(); ^ src/memutil.h:37:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void free_ivector(); ^ src/memutil.h:38:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void free_matrix(); ^ src/memutil.h:39:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void free_imatrix(); ^ src/conjgrad.c: In function 'conjgrad': src/conjgrad.c:44:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL ( *func )(); ^ src/conjgrad.c:153:43: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (fch < (_REAL)0. || fch == (_REAL)0. && gnew / gmin >= (_REAL)-1.) { ^ src/conjgrad.c:85:22: warning: unused variable 'ivar' [-Wunused-variable] int niter, iobs, ivar, i, nfbeg, iterc, irsdg, igopt; ^ src/conjgrad.c:85:16: warning: unused variable 'iobs' [-Wunused-variable] int niter, iobs, ivar, i, nfbeg, iterc, irsdg, igopt; ^ src/conjgrad.c:84:16: warning: unused variable 'rho' [-Wunused-variable] _REAL fch, rho, sum; ^ src/conjgrad.c:82:23: warning: unused variable 'z' [-Wunused-variable] _REAL step, work, z, finit, ginit, gsqrd, gspln; ^ src/conjgrad.c:81:47: warning: unused variable 'drho' [-Wunused-variable] _REAL calc, gama, beta, fmin, gmin, dfpr, drho, gnew; ^ src/conjgrad.c:81:11: warning: unused variable 'calc' [-Wunused-variable] _REAL calc, gama, beta, fmin, gmin, dfpr, drho, gnew; ^ src/conjgrad.c:243:3: warning: 'iretry' may be used uninitialized in this function [-Wmaybe-uninitialized] ++iretry; ^ src/conjgrad.c:257:30: warning: 'iterrs' may be used uninitialized in this function [-Wmaybe-uninitialized] if (iterrs != 0 && iterc - iterrs < *n && (sum >= 0 ? sum : -sum) < gsqrd * (_REAL).2) { ^ src/conjgrad.c:208:8: warning: 'nfopt' may be used uninitialized in this function [-Wmaybe-uninitialized] if (niter > nfopt) { ^ src/conjgrad.c:220:23: warning: 'nfbeg' may be used uninitialized in this function [-Wmaybe-uninitialized] if (niter > nfbeg + 1) { ^ src/conjgrad.c:206:17: warning: 'fch' may be used uninitialized in this function [-Wmaybe-uninitialized] work = (fch + fch) / stepch - gnew - gmin; ^ src/conjgrad.c:229:22: warning: 'sbound' may be used uninitialized in this function [-Wmaybe-uninitialized] stepch = (sbound - stmin) * (_REAL).5; ^ src/conjgrad.c:206:24: warning: 'stepch' may be used uninitialized in this function [-Wmaybe-uninitialized] work = (fch + fch) / stepch - gnew - gmin; ^ src/conjgrad.c:233:27: warning: 'ddspln' may be used uninitialized in this function [-Wmaybe-uninitialized] gspln = gmin + stepch * ddspln; ^ src/conjgrad.c:265:8: warning: 'gamden' may be used uninitialized in this function [-Wmaybe-uninitialized] gama /= gamden; ^ src/conjgrad.c:229:22: warning: 'stmin' may be used uninitialized in this function [-Wmaybe-uninitialized] stepch = (sbound - stmin) * (_REAL).5; ^ src/conjgrad.c:171:11: warning: 'gsqrd' may be used uninitialized in this function [-Wmaybe-uninitialized] stmin = *dfpred / gsqrd; ^ src/conjgrad.c:221:13: warning: 'ginit' may be used uninitialized in this function [-Wmaybe-uninitialized] if ((r__1 = gmin / ginit, ((r__1) >= 0 ? (r__1) : ^ src/conjgrad.c:250:8: warning: 'finit' may be used uninitialized in this function [-Wmaybe-uninitialized] if (*f < finit) iterfm = iterc; ^ src/conjgrad.c:206:10: warning: 'gmin' may be used uninitialized in this function [-Wmaybe-uninitialized] work = (fch + fch) / stepch - gnew - gmin; ^ src/conjgrad.c:151:7: warning: 'fmin' may be used uninitialized in this function [-Wmaybe-uninitialized] fch = *f - fmin; ^ powerpc64le-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/prm.c -o build/temp.linux-ppc64le-2.7/src/prm.o In file included from src/prm.c:25:0: src/prm.h:84:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_initCallbacks(); ^ src/prm.h:87:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_cleanup(); ^ src/prm.c:32:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] extern int errno; ^ src/prm.c:53:1: warning: return type defaults to 'int' [-Wreturn-type] skipeoln(file) ^ src/prm.c:53:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] src/prm.c:75:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] iscompressed(name) ^ src/prm.c:99:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] genopen(name) ^ src/prm.c:173:1: warning: return type defaults to 'int' [-Wreturn-type] genclose(fileptr, popn) ^ src/prm.c:173:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] src/prm.c:191:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] get(size) ^ src/prm.c:216:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] preadln(file, name, string) ^ src/prm.c: In function 'readparm': src/prm.c:330:28: warning: unused variable 'fld' [-Wunused-variable] char buf[132], fld[20]; ^ src/prm.c:326:47: warning: variable 'atype' set but not used [-Wunused-but-set-variable] int i, k, idum, res, ifpert, iat, kat, lat, atype; ^ src/prm.c: At top level: src/prm.c:875:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] firstwat(prm) ^ src/prm.c: In function 'readcrdvec': src/prm.c:961:15: warning: unused variable 'n' [-Wunused-variable] int i, j, n; ^ src/prm.c: In function 'skipeoln': src/prm.c:64:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ src/prm.c: In function 'genclose': src/prm.c:183:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ src/prm.c: In function 'preadln': src/prm.c:236:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ src/prm.c: In function 'readparm': src/prm.c:351:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 80, file); ^ src/prm.c:365:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 80, file); ^ src/prm.c:395:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %d %d %d %d %d", ^ src/prm.c:424:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->Charges[i]); ^ src/prm.c:436:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %le", &prm->Masses[i]); ^ src/prm.c:447:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &prm->Iac[i]); ^ src/prm.c:455:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &prm->Iblo[i]); ^ src/prm.c:463:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &prm->Cno[i]); ^ src/prm.c:488:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &prm->Ipres[i]); ^ src/prm.c:498:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->Rk[i]); ^ src/prm.c:510:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->Req[i]); ^ src/prm.c:522:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->Tk[i]); ^ src/prm.c:534:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->Teq[i]); ^ src/prm.c:546:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->Pk[i]); ^ src/prm.c:558:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->Pn[i]); ^ src/prm.c:570:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->Phase[i]); ^ src/prm.c:582:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->Solty[i]); ^ src/prm.c:595:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->Cn1[i]); ^ src/prm.c:608:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->Cn2[i]); ^ src/prm.c:622:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %d %d", ^ src/prm.c:634:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %d %d", ^ src/prm.c:647:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %d %d %d", ^ src/prm.c:661:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %d %d %d", ^ src/prm.c:676:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %d %d %d %d", ^ src/prm.c:691:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %d %d %d %d", ^ src/prm.c:701:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &prm->ExclAt[i]); ^ src/prm.c:710:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->HB12[i]); ^ src/prm.c:722:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->HB10[i]); ^ src/prm.c:735:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &H[i]); ^ src/prm.c:762:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &prm->TreeJoin[i]); ^ src/prm.c:772:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &prm->AtomRes[i]); ^ src/prm.c:790:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %d %d", &prm->Iptres, &prm->Nspm, ^ src/prm.c:795:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &prm->Boundary[i]); ^ src/prm.c:798:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf %lf %lf", ^ src/prm.c:817:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %lf %lf %lf %lf", ^ powerpc64le-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/sff.c -o build/temp.linux-ppc64le-2.7/src/sff.o In file included from src/sff.c:43:0: src/prm.h:84:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_initCallbacks(); ^ src/prm.h:87:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_cleanup(); ^ In file included from src/sff.c:44:0: src/memutil.h:30:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void nrerror(); ^ src/memutil.h:31:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] float *vector(); ^ src/memutil.h:32:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] int *ivector(); ^ src/memutil.h:33:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] int *ipvector(); ^ src/memutil.h:34:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] float **matrix(); ^ src/memutil.h:35:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] int **imatrix(); ^ src/memutil.h:36:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void free_vector(); ^ src/memutil.h:37:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void free_ivector(); ^ src/memutil.h:38:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void free_matrix(); ^ src/memutil.h:39:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void free_imatrix(); ^ src/sff.c:76:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL second() ^ src/sff.c:88:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] float gauss(); /* never double -bsd- */ ^ src/sff.c: In function 'mm_options': src/sff.c:207:11: warning: 'return' with no value, in function returning non-void [-Wreturn-type] if (!c) return; ^ src/sff.c: In function 'md_options': src/sff.c:246:11: warning: 'return' with no value, in function returning non-void [-Wreturn-type] if (!c) return; ^ src/sff.c: At top level: src/sff.c:289:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_initCallbacks() ^ src/sff.c: In function 'mme_init': src/sff.c:311:9: warning: unused variable 'rrad' [-Wunused-variable] _REAL rrad; ^ src/sff.c:310:18: warning: unused variable 'ip2' [-Wunused-variable] int i, j, ip1, ip2, nblimit; ^ src/sff.c:310:13: warning: unused variable 'ip1' [-Wunused-variable] int i, j, ip1, ip2, nblimit; ^ src/sff.c:310:10: warning: unused variable 'j' [-Wunused-variable] int i, j, ip1, ip2, nblimit; ^ src/sff.c: At top level: src/sff.c:417:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL econs( x, f, prm, opts ) ^ src/sff.c:440:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL ebond( nbond, a1, a2, atype, Rk, Req, x, f ) ^ src/sff.c:471:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL eangl( nang, a1, a2, a3, atype, Tk, Teq, x, f ) ^ src/sff.c:542:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL ephiRes( nphi, a1, a2, a3, a4, atype, Pk, Pn, Phase, x, start, end ) ^ src/sff.c: In function 'ephiRes': src/sff.c:550:44: warning: unused variable 'e3' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:550:41: warning: unused variable 'e2' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:550:38: warning: unused variable 'e1' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:550:35: warning: unused variable 'd3' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:550:32: warning: unused variable 'd2' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:550:29: warning: unused variable 'd1' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:550:8: warning: unused variable 'df' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:549:63: warning: variable 'dd4z' set but not used [-Wunused-but-set-variable] _REAL dd1x,dd2x,dd3x,dd4x,dd1y,dd2y,dd3y,dd4y,dd1z,dd2z,dd3z,dd4z; ^ src/sff.c:549:58: warning: variable 'dd3z' set but not used [-Wunused-but-set-variable] _REAL dd1x,dd2x,dd3x,dd4x,dd1y,dd2y,dd3y,dd4y,dd1z,dd2z,dd3z,dd4z; ^ src/sff.c:549:53: warning: variable 'dd2z' set but not used [-Wunused-but-set-variable] _REAL dd1x,dd2x,dd3x,dd4x,dd1y,dd2y,dd3y,dd4y,dd1z,dd2z,dd3z,dd4z; ^ src/sff.c:549:48: warning: variable 'dd1z' set but not used [-Wunused-but-set-variable] _REAL dd1x,dd2x,dd3x,dd4x,dd1y,dd2y,dd3y,dd4y,dd1z,dd2z,dd3z,dd4z; ^ src/sff.c:549:43: warning: variable 'dd4y' set but not used [-Wunused-but-set-variable] _REAL dd1x,dd2x,dd3x,dd4x,dd1y,dd2y,dd3y,dd4y,dd1z,dd2z,dd3z,dd4z; ^ src/sff.c:549:38: warning: variable 'dd3y' set but not used [-Wunused-but-set-variable] _REAL dd1x,dd2x,dd3x,dd4x,dd1y,dd2y,dd3y,dd4y,dd1z,dd2z,dd3z,dd4z; ^ src/sff.c:549:33: warning: variable 'dd2y' set but not used [-Wunused-but-set-variable] _REAL dd1x,dd2x,dd3x,dd4x,dd1y,dd2y,dd3y,dd4y,dd1z,dd2z,dd3z,dd4z; ^ src/sff.c:549:28: warning: variable 'dd1y' set but not used [-Wunused-but-set-variable] _REAL dd1x,dd2x,dd3x,dd4x,dd1y,dd2y,dd3y,dd4y,dd1z,dd2z,dd3z,dd4z; ^ src/sff.c:549:23: warning: variable 'dd4x' set but not used [-Wunused-but-set-variable] _REAL dd1x,dd2x,dd3x,dd4x,dd1y,dd2y,dd3y,dd4y,dd1z,dd2z,dd3z,dd4z; ^ src/sff.c:549:18: warning: variable 'dd3x' set but not used [-Wunused-but-set-variable] _REAL dd1x,dd2x,dd3x,dd4x,dd1y,dd2y,dd3y,dd4y,dd1z,dd2z,dd3z,dd4z; ^ src/sff.c:549:13: warning: variable 'dd2x' set but not used [-Wunused-but-set-variable] _REAL dd1x,dd2x,dd3x,dd4x,dd1y,dd2y,dd3y,dd4y,dd1z,dd2z,dd3z,dd4z; ^ src/sff.c:549:8: warning: variable 'dd1x' set but not used [-Wunused-but-set-variable] _REAL dd1x,dd2x,dd3x,dd4x,dd1y,dd2y,dd3y,dd4y,dd1z,dd2z,dd3z,dd4z; ^ src/sff.c: At top level: src/sff.c:661:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL ephi( nphi, a1, a2, a3, a4, atype, Pk, Pn, Phase, x, f ) ^ src/sff.c: In function 'ephi': src/sff.c:672:15: warning: unused variable 'in4' [-Wunused-variable] int rat, in1,in4; ^ src/sff.c:672:11: warning: unused variable 'in1' [-Wunused-variable] int rat, in1,in4; ^ src/sff.c:672:6: warning: unused variable 'rat' [-Wunused-variable] int rat, in1,in4; ^ src/sff.c:669:44: warning: unused variable 'e3' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:669:41: warning: unused variable 'e2' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:669:38: warning: unused variable 'e1' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:669:35: warning: unused variable 'd3' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:669:32: warning: unused variable 'd2' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:669:29: warning: unused variable 'd1' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c: At top level: src/sff.c:815:5: warning: function declaration isn't a prototype [-Wstrict-prototypes] int nblist( x, npairs, pairlist, prm, cut, maxnb, frozen ) ^ src/sff.c: In function 'nblist': src/sff.c:828:9: warning: unused variable 'npairlist' [-Wunused-variable] int *npairlist; ^ src/sff.c:825:43: warning: unused variable 'jrescut' [-Wunused-variable] int k,jrp,jrp2,kpr, nbdist=0, irescut, jrescut; ^ src/sff.c:825:34: warning: unused variable 'irescut' [-Wunused-variable] int k,jrp,jrp2,kpr, nbdist=0, irescut, jrescut; ^ src/sff.c: At top level: src/sff.c:940:5: warning: function declaration isn't a prototype [-Wstrict-prototypes] int nblistBH( x, npairs, pairlist, prm, cut, maxnb, frozen ) ^ src/sff.c: In function 'nblistBH': src/sff.c:951:9: warning: unused variable 'npairlist' [-Wunused-variable] int *npairlist; ^ src/sff.c:947:18: warning: unused variable 'rrw' [-Wunused-variable] _REAL dx,dy,dz,rrw; ^ src/sff.c:947:15: warning: unused variable 'dz' [-Wunused-variable] _REAL dx,dy,dz,rrw; ^ src/sff.c:947:12: warning: unused variable 'dy' [-Wunused-variable] _REAL dx,dy,dz,rrw; ^ src/sff.c:947:9: warning: unused variable 'dx' [-Wunused-variable] _REAL dx,dy,dz,rrw; ^ src/sff.c: At top level: src/sff.c:1085:5: warning: function declaration isn't a prototype [-Wstrict-prototypes] int nbond( npairs, pairlist, x, f, enb, eel, ehb, enbfac, eelfac, prm, dield ) ^ src/sff.c: In function 'nbond': src/sff.c:1095:49: warning: unused variable 'eelt' [-Wunused-variable] _REAL dumx,dumy,dumz,cgi,xw1,xw2,xw3,r2inv,df2,eelt,r6,r10,f1,f2; ^ src/sff.c: In function 'getTor': src/sff.c:1298:19: warning: unused variable 'dum' [-Wunused-variable] _REAL eth, eta, dum; ^ src/sff.c: In function 'mme': src/sff.c:1340:79: warning: variable 'dum' set but not used [-Wunused-but-set-variable] _REAL ebh, eba, eth, eta, eph, epa, enb, ehb, eel, enb14, eel14, ecn, frms, dum; ^ src/sff.c: At top level: src/sff.c:1521:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL ebond4( nbond, a1, a2, atype, Rk, Req, x, f ) ^ src/sff.c:1555:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL eangl4( nang, a1, a2, a3, atype, Tk, Teq, x, f ) ^ src/sff.c:1634:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL ephi4( nphi, a1, a2, a3, a4, atype, Pk, Pn, Phase, x, f ) ^ src/sff.c: In function 'ephi4': src/sff.c:1643:44: warning: unused variable 'e3' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:1643:41: warning: unused variable 'e2' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:1643:38: warning: unused variable 'e1' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:1643:35: warning: unused variable 'd3' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:1643:32: warning: unused variable 'd2' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:1643:29: warning: unused variable 'd1' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c: At top level: src/sff.c:1794:5: warning: function declaration isn't a prototype [-Wstrict-prototypes] int nblist4( x, npairs, pairlist, prm, cut, maxnb, frozen ) ^ src/sff.c:1888:5: warning: function declaration isn't a prototype [-Wstrict-prototypes] int nbond4( npairs, pairlist, x, f, enb, eel, enbfac, eelfac, prm ) ^ src/sff.c: In function 'nbond4': src/sff.c:1898:58: warning: unused variable 'eelt' [-Wunused-variable] _REAL dumx,dumy,dumz,dumw,cgi,xw1,xw2,xw3,xw4,r2inv,df2,eelt,r6,f1,f2; ^ src/sff.c: At top level: src/sff.c:1971:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL mme4( x, f, iter, prm, opts ) ^ src/sff.c: In function 'mme4': src/sff.c:1979:7: warning: variable 'nb_pairs' set but not used [-Wunused-but-set-variable] int nb_pairs; ^ src/sff.c: At top level: src/sff.c:2063:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] int get_masses( minv, prm , dim) ^ src/sff.c: In function 'md': src/sff.c:2088:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL ( *mme )(); ^ src/sff.c:2097:19: warning: unused variable 'k' [-Wunused-variable] int nstep, i, k; ^ src/sff.c:2096:50: warning: variable 'etot' set but not used [-Wunused-but-set-variable] _REAL dtx, dt5, rndf, dttp, ekin0, ekin, epot, etot, tscal, temp, sd; ^ src/sff.c:2096:14: warning: variable 'dt5' set but not used [-Wunused-but-set-variable] _REAL dtx, dt5, rndf, dttp, ekin0, ekin, epot, etot, tscal, temp, sd; ^ src/sff.c: At top level: src/sff.c:2192:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] int mme_timer() ^ src/sff.c: In function 'nbond': src/sff.c:1258:16: warning: 'df2' may be used uninitialized in this function [-Wmaybe-uninitialized] df = (df2+6.*(f2-f1-f1)*enbfaci)*r2inv; ^ powerpc64le-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c sff/prmlib_wrap.c -o build/temp.linux-ppc64le-2.7/sff/prmlib_wrap.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/oldnumeric.h:1, from sff/prmlib_wrap.c:2964: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ In file included from sff/prmlib_wrap.c:2965:0: src/prm.h:84:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_initCallbacks(); ^ src/prm.h:87:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_cleanup(); ^ sff/prmlib_wrap.c: In function 'set_callback': sff/prmlib_wrap.c:3356:9: warning: unused variable 'name' [-Wunused-variable] char *name; ^ sff/prmlib_wrap.c:3355:7: warning: unused variable 'n' [-Wunused-variable] int n, freq=1, which; ^ powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security build/temp.linux-ppc64le-2.7/src/bhtree.o build/temp.linux-ppc64le-2.7/src/binpos.o build/temp.linux-ppc64le-2.7/src/memutil.o build/temp.linux-ppc64le-2.7/src/rand2.o build/temp.linux-ppc64le-2.7/src/conjgrad.o build/temp.linux-ppc64le-2.7/src/prm.o build/temp.linux-ppc64le-2.7/src/sff.o build/temp.linux-ppc64le-2.7/sff/prmlib_wrap.o -lm -o build/lib.linux-ppc64le-2.7/sff/_prmlib.so dh_auto_test -a /usr/bin/fakeroot debian/rules binary-arch dh binary-arch --with python2 dh_testroot -a dh_prep -a dh_auto_install -a running install running build running build_py running build_ext running install_lib creating /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr creating /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib creating /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7 creating /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages creating /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff copying build/lib.linux-ppc64le-2.7/sff/__init__.py -> /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff creating /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff/Tests copying build/lib.linux-ppc64le-2.7/sff/Tests/__init__.py -> /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff/Tests copying build/lib.linux-ppc64le-2.7/sff/Tests/tripepparmdict.py -> /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff/Tests copying build/lib.linux-ppc64le-2.7/sff/Tests/p1H_crd.py -> /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff/Tests copying build/lib.linux-ppc64le-2.7/sff/Tests/test_dependencies.py -> /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff/Tests copying build/lib.linux-ppc64le-2.7/sff/Tests/test.py -> /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff/Tests copying build/lib.linux-ppc64le-2.7/sff/amber.py -> /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff copying build/lib.linux-ppc64le-2.7/sff/_prmlib.so -> /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff running install_data copying sff/Tests/tripeptide.prm -> /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff/Tests copying sff/Tests/p1H.pdb -> /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff/Tests running install_egg_info Writing /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff-1.5.6.egg-info debian/rules override_dh_install make[1]: Entering directory `/build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519' dh_install dh_numpy make[1]: Leaving directory `/build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519' dh_installdocs -a dh_installchangelogs -a dh_python2 -a dh_perl -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: all non-arch-all packages for this build platform ppc64el: mgltools-sff dh_strip debug symbol extraction: packages to act on: mgltools-sff dh_strip debug symbol extraction: ignored packages: dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package mgltools-sff: unknown substitution variable ${python:Versions} /usr/bin/pkg_create_dbgsym: building ddeb package dpkg-deb: building package `mgltools-sff-dbgsym' in `../mgltools-sff-dbgsym_1.5.7~rc1~cvs.20130519-2_ppc64el.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 119 pkgstriptranslations: processing mgltools-sff (in debian/mgltools-sff); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/mgltools-sff/DEBIAN/control, package mgltools-sff, directory debian/mgltools-sff pkgstripfiles: Truncating usr/share/doc/mgltools-sff/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package mgltools-sff took 0 s dpkg-deb: warning: 'debian/mgltools-sff/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: 'debian/mgltools-sff/DEBIAN/control' contains user-defined field 'Python-Version' dpkg-deb: warning: ignoring 2 warnings about the control file(s) dpkg-deb: building package `mgltools-sff' in `../mgltools-sff_1.5.7~rc1~cvs.20130519-2_ppc64el.deb'. dpkg-genchanges -B -mUbuntu Build Daemon >../mgltools-sff_1.5.7~rc1~cvs.20130519-2_ppc64el.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build mgltools-sff-1.5.7~rc1~cvs.20130519 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20140220-0658 Publishing debug debs. chroot-autobuild/build/buildd/mgltools-sff_1.5.7~rc1~cvs.20130519-2_ppc64el.deb: new debian package, version 2.0. size 70264 bytes: control archive=1560 bytes. 1205 bytes, 24 lines control 1179 bytes, 14 lines md5sums 162 bytes, 9 lines * postinst #!/bin/sh 261 bytes, 14 lines * prerm #!/bin/sh Package: mgltools-sff Version: 1.5.7~rc1~cvs.20130519-2 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 355 Depends: libc6 (>= 2.17), python-numpy (>= 1:1.8.0), python-numpy-abi9, python (>= 2.7), python (<< 2.8), python:any (>= 2.7.1-0ubuntu2), mgltools-bhtree Enhances: autodocktools Section: non-free/science Priority: optional Homepage: http://mgltools.scripps.edu/ Description: Simple Force Field for Python This package is part of the mgltools set of Python libraries which provide an infrastructure for the analysis of protein structures and their docking of chemical compounds. . It implements an Amber force field with an interface to a molecular dynamics engine. SFF stands for simple force field. It is a C implementation of the amber force field made by Tom Macke and David Case. . This package exposes a wrapped version of the prm structure which holds the Amber parameters needed for an Amber calculation. It also exposes the mme and md functions to perform molecular mechanics and dynamics respectively. Python-Version: 2.7 chroot-autobuild/build/buildd/mgltools-sff_1.5.7~rc1~cvs.20130519-2_ppc64el.deb: drwxr-xr-x root/root 0 2014-02-20 06:58 ./ drwxr-xr-x root/root 0 2014-02-20 06:58 ./usr/ drwxr-xr-x root/root 0 2014-02-20 06:58 ./usr/lib/ drwxr-xr-x root/root 0 2014-02-20 06:58 ./usr/lib/python2.7/ drwxr-xr-x root/root 0 2014-02-20 06:58 ./usr/lib/python2.7/dist-packages/ drwxr-xr-x root/root 0 2014-02-20 06:58 ./usr/lib/python2.7/dist-packages/sff/ -rw-r--r-- root/root 144 2006-03-09 17:03 ./usr/lib/python2.7/dist-packages/sff/__init__.py drwxr-xr-x root/root 0 2014-02-20 06:58 ./usr/lib/python2.7/dist-packages/sff/Tests/ -rw-r--r-- root/root 1 2004-06-15 13:10 ./usr/lib/python2.7/dist-packages/sff/Tests/__init__.py -rw-r--r-- root/root 15331 2004-06-15 13:10 ./usr/lib/python2.7/dist-packages/sff/Tests/tripepparmdict.py -rw-r--r-- root/root 16014 2004-06-15 13:10 ./usr/lib/python2.7/dist-packages/sff/Tests/tripeptide.prm -rw-r--r-- root/root 1055 2004-06-15 13:10 ./usr/lib/python2.7/dist-packages/sff/Tests/p1H_crd.py -rw-r--r-- root/root 3534 2004-06-15 13:10 ./usr/lib/python2.7/dist-packages/sff/Tests/p1H.pdb -rw-r--r-- root/root 838 2006-03-15 16:45 ./usr/lib/python2.7/dist-packages/sff/Tests/test_dependencies.py -rw-r--r-- root/root 4955 2007-07-30 16:21 ./usr/lib/python2.7/dist-packages/sff/Tests/test.py -rw-r--r-- root/root 15007 2007-07-30 16:21 ./usr/lib/python2.7/dist-packages/sff/amber.py -rw-r--r-- root/root 251704 2014-02-20 06:58 ./usr/lib/python2.7/dist-packages/sff/_prmlib.so -rw-r--r-- root/root 336 2014-02-20 06:58 ./usr/lib/python2.7/dist-packages/sff-1.5.6.egg-info drwxr-xr-x root/root 0 2014-02-20 06:58 ./usr/share/ drwxr-xr-x root/root 0 2014-02-20 06:58 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-02-20 06:58 ./usr/share/doc/mgltools-sff/ -rw-r--r-- root/root 5989 2013-05-31 13:09 ./usr/share/doc/mgltools-sff/copyright -rw-r--r-- root/root 874 2014-02-20 06:58 ./usr/share/doc/mgltools-sff/changelog.Debian.gz -rw-r--r-- root/root 1417 2011-04-26 08:14 ./usr/share/doc/mgltools-sff/README.Debian mgltools-sff_1.5.7~rc1~cvs.20130519-2_ppc64el.changes: Format: 1.8 Date: Sat, 03 Aug 2013 16:00:00 +0200 Source: mgltools-sff Binary: mgltools-sff Architecture: ppc64el Version: 1.5.7~rc1~cvs.20130519-2 Distribution: trusty Urgency: low Maintainer: Ubuntu Build Daemon Changed-By: Thorsten Alteholz Description: mgltools-sff - Simple Force Field for Python Changes: mgltools-sff (1.5.7~rc1~cvs.20130519-2) unstable; urgency=low . * new upload with different debian version (due to missing bhtree) Checksums-Sha1: 557c7eace36dcbdceac8396e9def0c2d31582dc9 70264 mgltools-sff_1.5.7~rc1~cvs.20130519-2_ppc64el.deb Checksums-Sha256: 8f2bb7903a53fdfa2fe7b4d40bd02faf61958952705a98ff88f5611abeec7e63 70264 mgltools-sff_1.5.7~rc1~cvs.20130519-2_ppc64el.deb Files: c5df1d6f10742d855e4b3d758e0cddc3 70264 non-free/science optional mgltools-sff_1.5.7~rc1~cvs.20130519-2_ppc64el.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20140220-0658 Build needed 00:00:14, 3684k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-5602762'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-5602762/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-5602762'] Unmounting chroot for build PACKAGEBUILD-5602762... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-5602762'] Removing build PACKAGEBUILD-5602762