RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux birch 3.8.0 #1 SMP Tue Oct 8 01:20:46 ICT 2013 aarch64 Buildd toolchain package versions: launchpad-buildd_119~APM.12.04.2 python-lpbuildd_119~APM.12.04.2. Syncing the system clock with the buildd NTP service... 26 Oct 10:43:27 ntpdate[31031]: adjust time server 10.211.37.1 offset -0.026055 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-5140645', '/home/buildd/filecache-default/b26b22d5e9534fc8f0f6f99171885be7b2b8539d'] Unpacking chroot for build PACKAGEBUILD-5140645 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-5140645'] Mounting chroot for build PACKAGEBUILD-5140645 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-5140645', 'deb http://ftpmaster.internal/ubuntu trusty main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu trusty-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu trusty-updates main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu trusty-proposed main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-5140645 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-5140645', 'arm64'] Updating debian chroot for build PACKAGEBUILD-5140645 Ign http://archive-team.internal trusty InRelease Ign http://ftpmaster.internal trusty InRelease Ign http://archive-team.internal trusty Release.gpg Ign http://ftpmaster.internal trusty-security InRelease Hit http://archive-team.internal trusty Release Ign http://ftpmaster.internal trusty-updates InRelease Ign http://archive-team.internal trusty/main arm64 Packages/DiffIndex Ign http://ftpmaster.internal trusty-proposed InRelease Get:1 http://ftpmaster.internal trusty Release.gpg [933 B] Get:2 http://ftpmaster.internal trusty-security Release.gpg [933 B] Get:3 http://ftpmaster.internal trusty-updates Release.gpg [933 B] Get:4 http://ftpmaster.internal trusty-proposed Release.gpg [933 B] Get:5 http://ftpmaster.internal trusty Release [49.6 kB] Ign http://archive-team.internal trusty/main Translation-en Get:6 http://ftpmaster.internal trusty-security Release [49.6 kB] Hit http://archive-team.internal trusty/main arm64 Packages Get:7 http://ftpmaster.internal trusty-updates Release [49.6 kB] Get:8 http://ftpmaster.internal trusty-proposed Release [49.6 kB] Get:9 http://ftpmaster.internal trusty/main arm64 Packages [1157 kB] Get:10 http://ftpmaster.internal trusty/restricted arm64 Packages [14 B] Get:11 http://ftpmaster.internal trusty/universe arm64 Packages [4601 kB] Get:12 http://ftpmaster.internal trusty/multiverse arm64 Packages [92.1 kB] Get:13 http://ftpmaster.internal trusty/main Translation-en [721 kB] Get:14 http://ftpmaster.internal trusty/multiverse Translation-en [102 kB] Get:15 http://ftpmaster.internal trusty/restricted Translation-en [2686 B] Get:16 http://ftpmaster.internal trusty/universe Translation-en [3969 kB] Get:17 http://ftpmaster.internal trusty-security/main arm64 Packages [14 B] Get:18 http://ftpmaster.internal trusty-security/restricted arm64 Packages [14 B] Get:19 http://ftpmaster.internal trusty-security/universe arm64 Packages [14 B] Get:20 http://ftpmaster.internal trusty-security/multiverse arm64 Packages [14 B] Get:21 http://ftpmaster.internal trusty-security/main Translation-en [14 B] Get:22 http://ftpmaster.internal trusty-security/multiverse Translation-en [14 B] Get:23 http://ftpmaster.internal trusty-security/restricted Translation-en [14 B] Get:24 http://ftpmaster.internal trusty-security/universe Translation-en [14 B] Get:25 http://ftpmaster.internal trusty-updates/main arm64 Packages [14 B] Get:26 http://ftpmaster.internal trusty-updates/restricted arm64 Packages [14 B] Get:27 http://ftpmaster.internal trusty-updates/universe arm64 Packages [14 B] Get:28 http://ftpmaster.internal trusty-updates/multiverse arm64 Packages [14 B] Get:29 http://ftpmaster.internal trusty-updates/main Translation-en [14 B] Get:30 http://ftpmaster.internal trusty-updates/multiverse Translation-en [14 B] Get:31 http://ftpmaster.internal trusty-updates/restricted Translation-en [14 B] Get:32 http://ftpmaster.internal trusty-updates/universe Translation-en [14 B] Get:33 http://ftpmaster.internal trusty-proposed/main arm64 Packages [11.4 kB] Get:34 http://ftpmaster.internal trusty-proposed/restricted arm64 Packages [14 B] Get:35 http://ftpmaster.internal trusty-proposed/universe arm64 Packages [52.3 kB] Get:36 http://ftpmaster.internal trusty-proposed/multiverse arm64 Packages [957 B] Get:37 http://ftpmaster.internal trusty-proposed/main Translation-en [7552 B] Get:38 http://ftpmaster.internal trusty-proposed/multiverse Translation-en [1496 B] Get:39 http://ftpmaster.internal trusty-proposed/restricted Translation-en [14 B] Get:40 http://ftpmaster.internal trusty-proposed/universe Translation-en [65.9 kB] Fetched 11.0 MB in 14s (746 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: busybox-initramfs initramfs-tools initramfs-tools-bin kmod libdrm2 libgssapi-krb5-2 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 libldap-2.4-2 libmpfr4 libsqlite3-0 module-init-tools perl perl-base perl-modules tar upstart 19 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 11.7 MB of archives. After this operation, 2706 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! perl perl-base perl-modules tar libsqlite3-0 libdrm2 libkmod2 kmod module-init-tools libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libldap-2.4-2 libmpfr4 busybox-initramfs initramfs-tools initramfs-tools-bin upstart Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main perl arm64 5.18.1-4 [3937 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main perl-base arm64 5.18.1-4 [1473 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main perl-modules all 5.18.1-4 [3926 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty-proposed/main tar arm64 1.27-1 [213 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main libsqlite3-0 arm64 3.8.0.2-1ubuntu1 [346 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libdrm2 arm64 2.4.46-3ubuntu1 [22.8 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main libkmod2 arm64 15-0ubuntu2 [36.6 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main kmod arm64 15-0ubuntu2 [85.9 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main module-init-tools all 15-0ubuntu2 [1874 B] Get:10 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libk5crypto3 arm64 1.11.3+dfsg-3ubuntu1 [98.0 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libgssapi-krb5-2 arm64 1.11.3+dfsg-3ubuntu1 [114 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libkrb5-3 arm64 1.11.3+dfsg-3ubuntu1 [309 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libkrb5support0 arm64 1.11.3+dfsg-3ubuntu1 [30.1 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main libldap-2.4-2 arm64 2.4.31-1+nmu2ubuntu4 [159 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main libmpfr4 arm64 3.1.2-1 [207 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main busybox-initramfs arm64 1:1.20.0-9ubuntu2 [186 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main initramfs-tools all 0.103ubuntu2 [49.2 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main initramfs-tools-bin arm64 0.103ubuntu2 [9510 B] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main upstart arm64 1.10-0ubuntu8 [521 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.7 MB in 11s (992 kB/s) (Reading database ... 11942 files and directories currently installed.) Preparing to replace perl 5.14.2-21build1 (using .../perl_5.18.1-4_arm64.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-21build1 (using .../perl-base_5.18.1-4_arm64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.18.1-4) ... (Reading database ... 11844 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-21build1 (using .../perl-modules_5.18.1-4_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace tar 1.26+dfsg-8 (using .../archives/tar_1.27-1_arm64.deb) ... Unpacking replacement tar ... Setting up tar (1.27-1) ... (Reading database ... 11882 files and directories currently installed.) Preparing to replace libsqlite3-0:arm64 3.7.17-1ubuntu1 (using .../libsqlite3-0_3.8.0.2-1ubuntu1_arm64.deb) ... Unpacking replacement libsqlite3-0:arm64 ... Preparing to replace libdrm2:arm64 2.4.46-3 (using .../libdrm2_2.4.46-3ubuntu1_arm64.deb) ... Unpacking replacement libdrm2:arm64 ... Preparing to replace libkmod2:arm64 9-3ubuntu1 (using .../libkmod2_15-0ubuntu2_arm64.deb) ... Unpacking replacement libkmod2:arm64 ... Preparing to replace kmod 9-3ubuntu1 (using .../kmod_15-0ubuntu2_arm64.deb) ... Unpacking replacement kmod ... Preparing to replace module-init-tools 9-3ubuntu1 (using .../module-init-tools_15-0ubuntu2_all.deb) ... Unpacking replacement module-init-tools ... Preparing to replace libk5crypto3:arm64 1.10.1+dfsg-6.1ubuntu1 (using .../libk5crypto3_1.11.3+dfsg-3ubuntu1_arm64.deb) ... Unpacking replacement libk5crypto3:arm64 ... Preparing to replace libgssapi-krb5-2:arm64 1.10.1+dfsg-6.1ubuntu1 (using .../libgssapi-krb5-2_1.11.3+dfsg-3ubuntu1_arm64.deb) ... Unpacking replacement libgssapi-krb5-2:arm64 ... Preparing to replace libkrb5-3:arm64 1.10.1+dfsg-6.1ubuntu1 (using .../libkrb5-3_1.11.3+dfsg-3ubuntu1_arm64.deb) ... Unpacking replacement libkrb5-3:arm64 ... Preparing to replace libkrb5support0:arm64 1.10.1+dfsg-6.1ubuntu1 (using .../libkrb5support0_1.11.3+dfsg-3ubuntu1_arm64.deb) ... Unpacking replacement libkrb5support0:arm64 ... Preparing to replace libldap-2.4-2:arm64 2.4.31-1+nmu2ubuntu3 (using .../libldap-2.4-2_2.4.31-1+nmu2ubuntu4_arm64.deb) ... Unpacking replacement libldap-2.4-2:arm64 ... Preparing to replace libmpfr4:arm64 3.1.1-2 (using .../libmpfr4_3.1.2-1_arm64.deb) ... Unpacking replacement libmpfr4:arm64 ... Preparing to replace busybox-initramfs 1:1.20.0-9ubuntu1 (using .../busybox-initramfs_1%3a1.20.0-9ubuntu2_arm64.deb) ... Unpacking replacement busybox-initramfs ... Preparing to replace initramfs-tools 0.103ubuntu1 (using .../initramfs-tools_0.103ubuntu2_all.deb) ... Unpacking replacement initramfs-tools ... Preparing to replace initramfs-tools-bin 0.103ubuntu1 (using .../initramfs-tools-bin_0.103ubuntu2_arm64.deb) ... Unpacking replacement initramfs-tools-bin ... Preparing to replace upstart 1.10-0ubuntu7 (using .../upstart_1.10-0ubuntu8_arm64.deb) ... Unpacking replacement upstart ... Setting up libsqlite3-0:arm64 (3.8.0.2-1ubuntu1) ... Setting up libdrm2:arm64 (2.4.46-3ubuntu1) ... Setting up libkmod2:arm64 (15-0ubuntu2) ... Setting up kmod (15-0ubuntu2) ... Setting up module-init-tools (15-0ubuntu2) ... Setting up libkrb5support0:arm64 (1.11.3+dfsg-3ubuntu1) ... Setting up libk5crypto3:arm64 (1.11.3+dfsg-3ubuntu1) ... Setting up libkrb5-3:arm64 (1.11.3+dfsg-3ubuntu1) ... Setting up libgssapi-krb5-2:arm64 (1.11.3+dfsg-3ubuntu1) ... Setting up libldap-2.4-2:arm64 (2.4.31-1+nmu2ubuntu4) ... Setting up libmpfr4:arm64 (3.1.2-1) ... Setting up busybox-initramfs (1:1.20.0-9ubuntu2) ... Setting up initramfs-tools-bin (0.103ubuntu2) ... Setting up initramfs-tools (0.103ubuntu2) ... update-initramfs: deferring update (trigger activated) Setting up upstart (1.10-0ubuntu8) ... Setting up perl-modules (5.18.1-4) ... Setting up perl (5.18.1-4) ... Processing triggers for libc-bin ... Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-5140645', 'arm64', 'trusty-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=trusty-proposed', '--purpose=PRIMARY', '--architecture=arm64', '--comp=multiverse', 'mgltools-sff_1.5.7~rc1~cvs.20130519-2.dsc'] Initiating build PACKAGEBUILD-5140645 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.8.0 #1 SMP Tue Oct 8 01:20:46 ICT 2013 aarch64 Automatic build of mgltools-sff_1.5.7~rc1~cvs.20130519-2 on birch by sbuild/arm64 1.170.5 Build started at 20131026-1044 ****************************************************************************** mgltools-sff_1.5.7~rc1~cvs.20130519-2.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 8), python-all-dev (>= 2.6), swig (>= 1.3.20), python-numpy, mgltools-bhtree Checking for already installed source dependencies... debhelper: missing python-all-dev: missing swig: missing python-numpy: missing mgltools-bhtree: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper python-all-dev swig python-numpy mgltools-bhtree Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: apparmor-easyprof bsdmainutils dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libblas3 libcroco3 libexpat1 libexpat1-dev libffi6 libgfortran3 libglib2.0-0 liblapack3 libmagic1 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python python-all python-dev python-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-minimal python3.3 python3.3-minimal swig2.0 Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl python-doc python-tk python-numpy-doc python-numpy-dbg python-nose gfortran python2.7-doc binfmt-support python3-doc python3-tk python3.3-doc swig-doc swig-examples swig2.0-examples swig2.0-doc Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: apparmor-easyprof bsdmainutils debhelper dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libblas3 libcroco3 libexpat1 libexpat1-dev libffi6 libgfortran3 libglib2.0-0 liblapack3 libmagic1 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libssl1.0.0 libunistring0 libxml2 man-db mgltools-bhtree mime-support po-debconf python python-all python-all-dev python-dev python-minimal python-numpy python2.7 python2.7-dev python2.7-minimal python3 python3-minimal python3.3 python3.3-minimal swig swig2.0 0 upgraded, 53 newly installed, 0 to remove and 0 not upgraded. Need to get 26.7 MB of archives. After this operation, 90.6 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libffi6 libmagic1 libssl1.0.0 libpython3.3-minimal mime-support libpython3.3-stdlib python3.3-minimal libasprintf0c2 libglib2.0-0 libpipeline1 libxml2 groff-base bsdmainutils man-db libcroco3 libgfortran3 libpython2.7-minimal libpython2.7-stdlib libpython2.7 libexpat1-dev libpython2.7-dev libunistring0 python2.7-minimal python3.3 python3-minimal libpython3-stdlib python3 dh-python file gettext-base gettext intltool-debian po-debconf apparmor-easyprof dh-apparmor debhelper libblas3 liblapack3 libpython-dev libpython-all-dev libpython-stdlib python2.7 python-minimal python python-numpy mgltools-bhtree python-all python2.7-dev python-dev python-all-dev swig2.0 swig Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main libexpat1 arm64 2.1.0-4 [114 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main libffi6 arm64 3.0.13-4 [19.0 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main libmagic1 arm64 5.11-2ubuntu4 [163 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main libssl1.0.0 arm64 1.0.1e-3ubuntu1 [860 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-minimal arm64 3.3.2-7ubuntu3 [609 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main mime-support all 3.54ubuntu1 [31.7 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-stdlib arm64 3.3.2-7ubuntu3 [2568 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main python3.3-minimal arm64 3.3.2-7ubuntu3 [1431 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main libasprintf0c2 arm64 0.18.3.1-1ubuntu1 [7172 B] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main libglib2.0-0 arm64 2.38.1-1 [827 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main libpipeline1 arm64 1.2.4-1 [24.5 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main libxml2 arm64 2.9.1+dfsg1-3ubuntu2 [588 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main groff-base arm64 1.22.2-3 [688 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main bsdmainutils arm64 9.0.5ubuntu1 [199 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main man-db arm64 2.6.5-2 [678 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main libcroco3 arm64 0.6.8-2 [64.9 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main libgfortran3 arm64 4.8.2-1ubuntu2 [262 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main libpython2.7-minimal arm64 2.7.5-8ubuntu3 [499 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main libpython2.7-stdlib arm64 2.7.5-8ubuntu3 [2332 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main libpython2.7 arm64 2.7.5-8ubuntu3 [1149 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main libexpat1-dev arm64 2.1.0-4 [183 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main libpython2.7-dev arm64 2.7.5-8ubuntu3 [3313 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main libunistring0 arm64 0.9.3-5ubuntu1 [403 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main python2.7-minimal arm64 2.7.5-8ubuntu3 [1192 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main python3.3 arm64 3.3.2-7ubuntu3 [129 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main python3-minimal arm64 3.3.2-14ubuntu1 [26.4 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main libpython3-stdlib arm64 3.3.2-14ubuntu1 [8144 B] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main python3 arm64 3.3.2-14ubuntu1 [9144 B] Get:29 http://ftpmaster.internal/ubuntu/ trusty-proposed/main dh-python all 1.20131021-1ubuntu1 [58.5 kB] Get:30 http://ftpmaster.internal/ubuntu/ trusty/main file arm64 5.11-2ubuntu4 [18.2 kB] Get:31 http://ftpmaster.internal/ubuntu/ trusty/main gettext-base arm64 0.18.3.1-1ubuntu1 [64.0 kB] Get:32 http://ftpmaster.internal/ubuntu/ trusty/main gettext arm64 0.18.3.1-1ubuntu1 [983 kB] Get:33 http://ftpmaster.internal/ubuntu/ trusty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:34 http://ftpmaster.internal/ubuntu/ trusty/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:35 http://ftpmaster.internal/ubuntu/ trusty/main apparmor-easyprof all 2.8.0-0ubuntu32 [23.3 kB] Get:36 http://ftpmaster.internal/ubuntu/ trusty/main dh-apparmor all 2.8.0-0ubuntu32 [7830 B] Get:37 http://ftpmaster.internal/ubuntu/ trusty/main debhelper all 9.20130921ubuntu1 [635 kB] Get:38 http://ftpmaster.internal/ubuntu/ trusty/main libblas3 arm64 1.2.20110419-7 [172 kB] Get:39 http://ftpmaster.internal/ubuntu/ trusty/main liblapack3 arm64 3.4.2+dfsg-4 [2262 kB] Get:40 http://ftpmaster.internal/ubuntu/ trusty/main libpython-dev arm64 2.7.5-5ubuntu1 [7850 B] Get:41 http://ftpmaster.internal/ubuntu/ trusty/main libpython-all-dev arm64 2.7.5-5ubuntu1 [950 B] Get:42 http://ftpmaster.internal/ubuntu/ trusty/main libpython-stdlib arm64 2.7.5-5ubuntu1 [7770 B] Get:43 http://ftpmaster.internal/ubuntu/ trusty/main python2.7 arm64 2.7.5-8ubuntu3 [192 kB] Get:44 http://ftpmaster.internal/ubuntu/ trusty/main python-minimal arm64 2.7.5-5ubuntu1 [31.5 kB] Get:45 http://ftpmaster.internal/ubuntu/ trusty/main python arm64 2.7.5-5ubuntu1 [173 kB] Get:46 http://ftpmaster.internal/ubuntu/ trusty/main python-numpy arm64 1:1.7.1-1ubuntu1 [1889 kB] Get:47 http://ftpmaster.internal/ubuntu/ trusty/multiverse mgltools-bhtree arm64 1.5.7~rc1~cvs.20130519-1 [58.4 kB] Get:48 http://ftpmaster.internal/ubuntu/ trusty/main python-all arm64 2.7.5-5ubuntu1 [938 B] Get:49 http://ftpmaster.internal/ubuntu/ trusty/main python2.7-dev arm64 2.7.5-8ubuntu3 [286 kB] Get:50 http://ftpmaster.internal/ubuntu/ trusty/main python-dev arm64 2.7.5-5ubuntu1 [1132 B] Get:51 http://ftpmaster.internal/ubuntu/ trusty/main python-all-dev arm64 2.7.5-5ubuntu1 [956 B] Get:52 http://ftpmaster.internal/ubuntu/ trusty/main swig2.0 arm64 2.0.10-0ubuntu2 [1180 kB] Get:53 http://ftpmaster.internal/ubuntu/ trusty/main swig arm64 2.0.10-0ubuntu2 [6680 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 26.7 MB in 31s (836 kB/s) Selecting previously unselected package libexpat1:arm64. (Reading database ... 11885 files and directories currently installed.) Unpacking libexpat1:arm64 (from .../libexpat1_2.1.0-4_arm64.deb) ... Selecting previously unselected package libffi6:arm64. Unpacking libffi6:arm64 (from .../libffi6_3.0.13-4_arm64.deb) ... Selecting previously unselected package libmagic1:arm64. Unpacking libmagic1:arm64 (from .../libmagic1_5.11-2ubuntu4_arm64.deb) ... Selecting previously unselected package libssl1.0.0:arm64. Unpacking libssl1.0.0:arm64 (from .../libssl1.0.0_1.0.1e-3ubuntu1_arm64.deb) ... Selecting previously unselected package libpython3.3-minimal:arm64. Unpacking libpython3.3-minimal:arm64 (from .../libpython3.3-minimal_3.3.2-7ubuntu3_arm64.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.54ubuntu1_all.deb) ... Selecting previously unselected package libpython3.3-stdlib:arm64. Unpacking libpython3.3-stdlib:arm64 (from .../libpython3.3-stdlib_3.3.2-7ubuntu3_arm64.deb) ... 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Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:arm64 (0.6.8-2) ... Setting up libgfortran3:arm64 (4.8.2-1ubuntu2) ... Setting up libpython2.7-minimal:arm64 (2.7.5-8ubuntu3) ... Setting up libpython2.7-stdlib:arm64 (2.7.5-8ubuntu3) ... Setting up libpython2.7:arm64 (2.7.5-8ubuntu3) ... Setting up libexpat1-dev:arm64 (2.1.0-4) ... Setting up libpython2.7-dev:arm64 (2.7.5-8ubuntu3) ... Setting up libunistring0:arm64 (0.9.3-5ubuntu1) ... Setting up python2.7-minimal (2.7.5-8ubuntu3) ... Linking and byte-compiling packages for runtime python2.7... Setting up python3.3 (3.3.2-7ubuntu3) ... Setting up python3-minimal (3.3.2-14ubuntu1) ... Setting up libpython3-stdlib:arm64 (3.3.2-14ubuntu1) ... Setting up file (5.11-2ubuntu4) ... Setting up gettext-base (0.18.3.1-1ubuntu1) ... Setting up gettext (0.18.3.1-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up libblas3 (1.2.20110419-7) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up liblapack3 (3.4.2+dfsg-4) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libpython-dev:arm64 (2.7.5-5ubuntu1) ... Setting up libpython-all-dev:arm64 (2.7.5-5ubuntu1) ... Setting up libpython-stdlib:arm64 (2.7.5-5ubuntu1) ... Setting up python2.7 (2.7.5-8ubuntu3) ... Setting up python-minimal (2.7.5-5ubuntu1) ... Setting up python (2.7.5-5ubuntu1) ... Setting up python-numpy (1:1.7.1-1ubuntu1) ... Setting up mgltools-bhtree (1.5.7~rc1~cvs.20130519-1) ... Setting up python-all (2.7.5-5ubuntu1) ... Setting up python2.7-dev (2.7.5-8ubuntu3) ... Setting up python-dev (2.7.5-5ubuntu1) ... Setting up python-all-dev (2.7.5-5ubuntu1) ... Setting up swig2.0 (2.0.10-0ubuntu2) ... Setting up swig (2.0.10-0ubuntu2) ... Setting up python3 (3.3.2-14ubuntu1) ... running python rtupdate hooks for python3.3... running python post-rtupdate hooks for python3.3... Setting up dh-python (1.20131021-1ubuntu1) ... Setting up apparmor-easyprof (2.8.0-0ubuntu32) ... Setting up dh-apparmor (2.8.0-0ubuntu32) ... Setting up debhelper (9.20130921ubuntu1) ... Processing triggers for libc-bin ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.17-93ubuntu4 make_3.81-8.2ubuntu3 dpkg-dev_1.16.12ubuntu1 gcc-4.8_4.8.2-1ubuntu2 g++-4.8_4.8.2-1ubuntu2 binutils_2.23.90.20131017-1ubuntu1 libstdc++-4.8-dev_4.8.2-1ubuntu2 libstdc++6_4.8.2-1ubuntu2 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Sat Aug 3 15:08:07 2013 UTC using DSA key ID 54B99890 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./mgltools-sff_1.5.7~rc1~cvs.20130519-2.dsc dpkg-source: info: extracting mgltools-sff in mgltools-sff-1.5.7~rc1~cvs.20130519 dpkg-source: info: unpacking mgltools-sff_1.5.7~rc1~cvs.20130519.orig.tar.gz dpkg-source: info: unpacking mgltools-sff_1.5.7~rc1~cvs.20130519-2.debian.tar.gz dpkg-buildpackage: source package mgltools-sff dpkg-buildpackage: source version 1.5.7~rc1~cvs.20130519-2 dpkg-source --before-build mgltools-sff-1.5.7~rc1~cvs.20130519 dpkg-buildpackage: host architecture arm64 /usr/bin/fakeroot debian/rules clean dh clean --with python2 dh_testdir dh_auto_clean running clean 'build/lib.linux-aarch64-2.7' does not exist -- can't clean it 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it debian/rules override_dh_clean make[1]: Entering directory `/build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519' dh_clean find . -name CVS -a -type d| xargs -r rm -r rm -rf build build-stamp debian/Pmv make[1]: Leaving directory `/build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519' debian/rules build-arch dh build-arch --with python2 dh_testdir -a dh_auto_configure -a dh_auto_build -a running build running build_py creating build creating build/lib.linux-aarch64-2.7 creating build/lib.linux-aarch64-2.7/sff copying sff/__init__.py -> build/lib.linux-aarch64-2.7/sff copying sff/__init__.py -> build/lib.linux-aarch64-2.7/sff copying sff/amber.py -> build/lib.linux-aarch64-2.7/sff creating build/lib.linux-aarch64-2.7/sff/Tests copying sff/Tests/test_dependencies.py -> build/lib.linux-aarch64-2.7/sff/Tests copying sff/Tests/p1H_crd.py -> build/lib.linux-aarch64-2.7/sff/Tests copying sff/Tests/tripepparmdict.py -> build/lib.linux-aarch64-2.7/sff/Tests copying sff/Tests/test.py -> build/lib.linux-aarch64-2.7/sff/Tests copying sff/Tests/__init__.py -> build/lib.linux-aarch64-2.7/sff/Tests running build_ext building '_prmlib' extension swigging sff/prmlib.i to sff/prmlib_wrap.c swig -python -o sff/prmlib_wrap.c sff/prmlib.i creating build/temp.linux-aarch64-2.7 creating build/temp.linux-aarch64-2.7/src creating build/temp.linux-aarch64-2.7/sff aarch64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/bhtree.c -o build/temp.linux-aarch64-2.7/src/bhtree.o src/bhtree.c: In function 'generateBHtree': src/bhtree.c:65:3: warning: implicit declaration of function 'malloc' [-Wimplicit-function-declaration] r=(BHtree *)malloc(sizeof(BHtree)); ^ src/bhtree.c:65:15: warning: incompatible implicit declaration of built-in function 'malloc' [enabled by default] r=(BHtree *)malloc(sizeof(BHtree)); ^ src/bhtree.c: In function 'freeBHtree': src/bhtree.c:176:5: warning: implicit declaration of function 'free' [-Wimplicit-function-declaration] for (i=0;iroot->n;i++) free(tree->atom[i]); ^ src/bhtree.c:176:35: warning: incompatible implicit declaration of built-in function 'free' [enabled by default] for (i=0;iroot->n;i++) free(tree->atom[i]); ^ src/bhtree.c:180:3: warning: incompatible implicit declaration of built-in function 'free' [enabled by default] free(tree); ^ src/bhtree.c: In function 'freeBHnode': src/bhtree.c:189:5: warning: incompatible implicit declaration of built-in function 'free' [enabled by default] free(node); ^ src/bhtree.c: In function 'divideBHnode': src/bhtree.c:230:24: warning: incompatible implicit declaration of built-in function 'malloc' [enabled by default] node->left=(BHnode *)malloc(sizeof(BHnode)); ^ src/bhtree.c: In function 'findBHcloseAtoms': src/bhtree.c:369:9: warning: unused variable 'n' [-Wunused-variable] int i,n; ^ aarch64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/binpos.c -o build/temp.linux-aarch64-2.7/src/binpos.o In file included from src/binpos.c:2:0: src/prm.h:84:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_initCallbacks(); ^ src/prm.h:87:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_cleanup(); ^ src/binpos.c: In function 'openbinpos': src/binpos.c:15:2: warning: implicit declaration of function 'strcmp' [-Wimplicit-function-declaration] if( strcmp( magic, "fxyz" ) != 0 ){ ^ src/binpos.c: In function 'readbinpos': src/binpos.c:32:2: warning: implicit declaration of function 'strncmp' [-Wimplicit-function-declaration] if( 0 == strncmp( n_atomf,"fxyz",4 ) ) { ^ src/binpos.c:33:8: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread( n_atomf, size, 1, fp ); ^ src/binpos.c:29:11: warning: 'n_atomf' is used uninitialized in this function [-Wuninitialized] if( fread( n_atomf, sizeof( int ), 1, fp ) != 1 ) { ^ aarch64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/memutil.c -o build/temp.linux-aarch64-2.7/src/memutil.o In file included from src/memutil.c:32:0: src/prm.h:84:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_initCallbacks(); ^ src/prm.h:87:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_cleanup(); ^ src/memutil.c:34:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] void nrerror( msg ) ^ src/memutil.c:42:8: warning: function declaration isn't a prototype [-Wstrict-prototypes] float *vector( nl, nh ) ^ src/memutil.c:53:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] int *ivector( nl, nh ) ^ src/memutil.c:64:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] int *ipvector( nl, nh ) ^ src/memutil.c:76:9: warning: function declaration isn't a prototype [-Wstrict-prototypes] float **matrix( nrl, nrh, ncl, nch ) ^ src/memutil.c:104:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] int **imatrix( nrl, nrh, ncl, nch ) ^ src/memutil.c:132:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] void free_vector( v, nl, nh ) ^ src/memutil.c:140:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] void free_ivector( v, nl, nh ) ^ src/memutil.c:158:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] void free_imatrix( m, nrl, nrh, ncl, nch ) ^ src/memutil.c:167:8: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL *Rvector( nl, nh ) ^ src/memutil.c:178:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] void free_Rvector( v, nl, nh ) ^ aarch64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/rand2.c -o build/temp.linux-aarch64-2.7/src/rand2.o src/rand2.c:55:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] float rand2( idum ) ^ src/rand2.c:96:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] float gauss( mean, sd, idum) ^ aarch64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/conjgrad.c -o build/temp.linux-aarch64-2.7/src/conjgrad.o In file included from src/conjgrad.c:31:0: src/prm.h:84:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_initCallbacks(); ^ src/prm.h:87:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_cleanup(); ^ In file included from src/conjgrad.c:32:0: src/memutil.h:30:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void nrerror(); ^ src/memutil.h:31:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] float *vector(); ^ src/memutil.h:32:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] int *ivector(); ^ src/memutil.h:33:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] int *ipvector(); ^ src/memutil.h:34:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] float **matrix(); ^ src/memutil.h:35:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] int **imatrix(); ^ src/memutil.h:36:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void free_vector(); ^ src/memutil.h:37:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void free_ivector(); ^ src/memutil.h:38:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void free_matrix(); ^ src/memutil.h:39:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void free_imatrix(); ^ src/conjgrad.c: In function 'conjgrad': src/conjgrad.c:44:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL ( *func )(); ^ src/conjgrad.c:153:43: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (fch < (_REAL)0. || fch == (_REAL)0. && gnew / gmin >= (_REAL)-1.) { ^ src/conjgrad.c:85:22: warning: unused variable 'ivar' [-Wunused-variable] int niter, iobs, ivar, i, nfbeg, iterc, irsdg, igopt; ^ src/conjgrad.c:85:16: warning: unused variable 'iobs' [-Wunused-variable] int niter, iobs, ivar, i, nfbeg, iterc, irsdg, igopt; ^ src/conjgrad.c:84:16: warning: unused variable 'rho' [-Wunused-variable] _REAL fch, rho, sum; ^ src/conjgrad.c:82:23: warning: unused variable 'z' [-Wunused-variable] _REAL step, work, z, finit, ginit, gsqrd, gspln; ^ src/conjgrad.c:81:47: warning: unused variable 'drho' [-Wunused-variable] _REAL calc, gama, beta, fmin, gmin, dfpr, drho, gnew; ^ src/conjgrad.c:81:11: warning: unused variable 'calc' [-Wunused-variable] _REAL calc, gama, beta, fmin, gmin, dfpr, drho, gnew; ^ src/conjgrad.c:243:3: warning: 'iretry' may be used uninitialized in this function [-Wmaybe-uninitialized] ++iretry; ^ src/conjgrad.c:257:30: warning: 'iterrs' may be used uninitialized in this function [-Wmaybe-uninitialized] if (iterrs != 0 && iterc - iterrs < *n && (sum >= 0 ? sum : -sum) < gsqrd * (_REAL).2) { ^ src/conjgrad.c:208:8: warning: 'nfopt' may be used uninitialized in this function [-Wmaybe-uninitialized] if (niter > nfopt) { ^ src/conjgrad.c:220:23: warning: 'nfbeg' may be used uninitialized in this function [-Wmaybe-uninitialized] if (niter > nfbeg + 1) { ^ src/conjgrad.c:206:17: warning: 'fch' may be used uninitialized in this function [-Wmaybe-uninitialized] work = (fch + fch) / stepch - gnew - gmin; ^ src/conjgrad.c:229:22: warning: 'sbound' may be used uninitialized in this function [-Wmaybe-uninitialized] stepch = (sbound - stmin) * (_REAL).5; ^ src/conjgrad.c:206:24: warning: 'stepch' may be used uninitialized in this function [-Wmaybe-uninitialized] work = (fch + fch) / stepch - gnew - gmin; ^ src/conjgrad.c:233:27: warning: 'ddspln' may be used uninitialized in this function [-Wmaybe-uninitialized] gspln = gmin + stepch * ddspln; ^ src/conjgrad.c:265:8: warning: 'gamden' may be used uninitialized in this function [-Wmaybe-uninitialized] gama /= gamden; ^ src/conjgrad.c:229:22: warning: 'stmin' may be used uninitialized in this function [-Wmaybe-uninitialized] stepch = (sbound - stmin) * (_REAL).5; ^ src/conjgrad.c:171:11: warning: 'gsqrd' may be used uninitialized in this function [-Wmaybe-uninitialized] stmin = *dfpred / gsqrd; ^ src/conjgrad.c:221:13: warning: 'ginit' may be used uninitialized in this function [-Wmaybe-uninitialized] if ((r__1 = gmin / ginit, ((r__1) >= 0 ? (r__1) : ^ src/conjgrad.c:250:8: warning: 'finit' may be used uninitialized in this function [-Wmaybe-uninitialized] if (*f < finit) iterfm = iterc; ^ src/conjgrad.c:206:10: warning: 'gmin' may be used uninitialized in this function [-Wmaybe-uninitialized] work = (fch + fch) / stepch - gnew - gmin; ^ src/conjgrad.c:151:7: warning: 'fmin' may be used uninitialized in this function [-Wmaybe-uninitialized] fch = *f - fmin; ^ aarch64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/prm.c -o build/temp.linux-aarch64-2.7/src/prm.o In file included from src/prm.c:25:0: src/prm.h:84:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_initCallbacks(); ^ src/prm.h:87:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_cleanup(); ^ src/prm.c:32:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] extern int errno; ^ src/prm.c:53:1: warning: return type defaults to 'int' [-Wreturn-type] skipeoln(file) ^ src/prm.c:53:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] src/prm.c:75:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] iscompressed(name) ^ src/prm.c:99:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] genopen(name) ^ src/prm.c:173:1: warning: return type defaults to 'int' [-Wreturn-type] genclose(fileptr, popn) ^ src/prm.c:173:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] src/prm.c:191:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] get(size) ^ src/prm.c:216:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] preadln(file, name, string) ^ src/prm.c: In function 'readparm': src/prm.c:330:28: warning: unused variable 'fld' [-Wunused-variable] char buf[132], fld[20]; ^ src/prm.c:326:47: warning: variable 'atype' set but not used [-Wunused-but-set-variable] int i, k, idum, res, ifpert, iat, kat, lat, atype; ^ src/prm.c: At top level: src/prm.c:875:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] firstwat(prm) ^ src/prm.c: In function 'readcrdvec': src/prm.c:961:15: warning: unused variable 'n' [-Wunused-variable] int i, j, n; ^ src/prm.c: In function 'skipeoln': src/prm.c:64:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ src/prm.c: In function 'genclose': src/prm.c:183:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ src/prm.c: In function 'preadln': src/prm.c:236:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ src/prm.c: In function 'readparm': src/prm.c:351:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 80, file); ^ src/prm.c:365:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 80, file); ^ src/prm.c:395:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %d %d %d %d %d", ^ src/prm.c:424:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->Charges[i]); ^ src/prm.c:436:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %le", &prm->Masses[i]); ^ src/prm.c:447:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &prm->Iac[i]); ^ src/prm.c:455:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &prm->Iblo[i]); ^ src/prm.c:463:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &prm->Cno[i]); ^ src/prm.c:488:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &prm->Ipres[i]); ^ src/prm.c:498:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->Rk[i]); ^ src/prm.c:510:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->Req[i]); ^ src/prm.c:522:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->Tk[i]); ^ src/prm.c:534:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->Teq[i]); ^ src/prm.c:546:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->Pk[i]); ^ src/prm.c:558:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->Pn[i]); ^ src/prm.c:570:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->Phase[i]); ^ src/prm.c:582:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->Solty[i]); ^ src/prm.c:595:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->Cn1[i]); ^ src/prm.c:608:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->Cn2[i]); ^ src/prm.c:622:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %d %d", ^ src/prm.c:634:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %d %d", ^ src/prm.c:647:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %d %d %d", ^ src/prm.c:661:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %d %d %d", ^ src/prm.c:676:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %d %d %d %d", ^ src/prm.c:691:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %d %d %d %d", ^ src/prm.c:701:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &prm->ExclAt[i]); ^ src/prm.c:710:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->HB12[i]); ^ src/prm.c:722:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &prm->HB10[i]); ^ src/prm.c:735:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf", &H[i]); ^ src/prm.c:762:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &prm->TreeJoin[i]); ^ src/prm.c:772:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &prm->AtomRes[i]); ^ src/prm.c:790:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %d %d", &prm->Iptres, &prm->Nspm, ^ src/prm.c:795:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &prm->Boundary[i]); ^ src/prm.c:798:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %lf %lf %lf", ^ src/prm.c:817:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %lf %lf %lf %lf", ^ aarch64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/sff.c -o build/temp.linux-aarch64-2.7/src/sff.o In file included from src/sff.c:43:0: src/prm.h:84:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_initCallbacks(); ^ src/prm.h:87:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_cleanup(); ^ In file included from src/sff.c:44:0: src/memutil.h:30:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void nrerror(); ^ src/memutil.h:31:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] float *vector(); ^ src/memutil.h:32:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] int *ivector(); ^ src/memutil.h:33:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] int *ipvector(); ^ src/memutil.h:34:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] float **matrix(); ^ src/memutil.h:35:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] int **imatrix(); ^ src/memutil.h:36:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void free_vector(); ^ src/memutil.h:37:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void free_ivector(); ^ src/memutil.h:38:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void free_matrix(); ^ src/memutil.h:39:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void free_imatrix(); ^ src/sff.c:76:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL second() ^ src/sff.c:88:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] float gauss(); /* never double -bsd- */ ^ src/sff.c: In function 'mm_options': src/sff.c:207:11: warning: 'return' with no value, in function returning non-void [-Wreturn-type] if (!c) return; ^ src/sff.c: In function 'md_options': src/sff.c:246:11: warning: 'return' with no value, in function returning non-void [-Wreturn-type] if (!c) return; ^ src/sff.c: At top level: src/sff.c:289:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_initCallbacks() ^ src/sff.c: In function 'mme_init': src/sff.c:311:9: warning: unused variable 'rrad' [-Wunused-variable] _REAL rrad; ^ src/sff.c:310:18: warning: unused variable 'ip2' [-Wunused-variable] int i, j, ip1, ip2, nblimit; ^ src/sff.c:310:13: warning: unused variable 'ip1' [-Wunused-variable] int i, j, ip1, ip2, nblimit; ^ src/sff.c:310:10: warning: unused variable 'j' [-Wunused-variable] int i, j, ip1, ip2, nblimit; ^ src/sff.c: At top level: src/sff.c:417:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL econs( x, f, prm, opts ) ^ src/sff.c:440:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL ebond( nbond, a1, a2, atype, Rk, Req, x, f ) ^ src/sff.c:471:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL eangl( nang, a1, a2, a3, atype, Tk, Teq, x, f ) ^ src/sff.c:542:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL ephiRes( nphi, a1, a2, a3, a4, atype, Pk, Pn, Phase, x, start, end ) ^ src/sff.c: In function 'ephiRes': src/sff.c:550:44: warning: unused variable 'e3' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:550:41: warning: unused variable 'e2' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:550:38: warning: unused variable 'e1' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:550:35: warning: unused variable 'd3' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:550:32: warning: unused variable 'd2' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:550:29: warning: unused variable 'd1' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:550:8: warning: unused variable 'df' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:549:63: warning: variable 'dd4z' set but not used [-Wunused-but-set-variable] _REAL dd1x,dd2x,dd3x,dd4x,dd1y,dd2y,dd3y,dd4y,dd1z,dd2z,dd3z,dd4z; ^ src/sff.c:549:58: warning: variable 'dd3z' set but not used [-Wunused-but-set-variable] _REAL dd1x,dd2x,dd3x,dd4x,dd1y,dd2y,dd3y,dd4y,dd1z,dd2z,dd3z,dd4z; ^ src/sff.c:549:53: warning: variable 'dd2z' set but not used [-Wunused-but-set-variable] _REAL dd1x,dd2x,dd3x,dd4x,dd1y,dd2y,dd3y,dd4y,dd1z,dd2z,dd3z,dd4z; ^ src/sff.c:549:48: warning: variable 'dd1z' set but not used [-Wunused-but-set-variable] _REAL dd1x,dd2x,dd3x,dd4x,dd1y,dd2y,dd3y,dd4y,dd1z,dd2z,dd3z,dd4z; ^ src/sff.c:549:43: warning: variable 'dd4y' set but not used [-Wunused-but-set-variable] _REAL dd1x,dd2x,dd3x,dd4x,dd1y,dd2y,dd3y,dd4y,dd1z,dd2z,dd3z,dd4z; ^ src/sff.c:549:38: warning: variable 'dd3y' set but not used [-Wunused-but-set-variable] _REAL dd1x,dd2x,dd3x,dd4x,dd1y,dd2y,dd3y,dd4y,dd1z,dd2z,dd3z,dd4z; ^ src/sff.c:549:33: warning: variable 'dd2y' set but not used [-Wunused-but-set-variable] _REAL dd1x,dd2x,dd3x,dd4x,dd1y,dd2y,dd3y,dd4y,dd1z,dd2z,dd3z,dd4z; ^ src/sff.c:549:28: warning: variable 'dd1y' set but not used [-Wunused-but-set-variable] _REAL dd1x,dd2x,dd3x,dd4x,dd1y,dd2y,dd3y,dd4y,dd1z,dd2z,dd3z,dd4z; ^ src/sff.c:549:23: warning: variable 'dd4x' set but not used [-Wunused-but-set-variable] _REAL dd1x,dd2x,dd3x,dd4x,dd1y,dd2y,dd3y,dd4y,dd1z,dd2z,dd3z,dd4z; ^ src/sff.c:549:18: warning: variable 'dd3x' set but not used [-Wunused-but-set-variable] _REAL dd1x,dd2x,dd3x,dd4x,dd1y,dd2y,dd3y,dd4y,dd1z,dd2z,dd3z,dd4z; ^ src/sff.c:549:13: warning: variable 'dd2x' set but not used [-Wunused-but-set-variable] _REAL dd1x,dd2x,dd3x,dd4x,dd1y,dd2y,dd3y,dd4y,dd1z,dd2z,dd3z,dd4z; ^ src/sff.c:549:8: warning: variable 'dd1x' set but not used [-Wunused-but-set-variable] _REAL dd1x,dd2x,dd3x,dd4x,dd1y,dd2y,dd3y,dd4y,dd1z,dd2z,dd3z,dd4z; ^ src/sff.c: At top level: src/sff.c:661:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL ephi( nphi, a1, a2, a3, a4, atype, Pk, Pn, Phase, x, f ) ^ src/sff.c: In function 'ephi': src/sff.c:672:15: warning: unused variable 'in4' [-Wunused-variable] int rat, in1,in4; ^ src/sff.c:672:11: warning: unused variable 'in1' [-Wunused-variable] int rat, in1,in4; ^ src/sff.c:672:6: warning: unused variable 'rat' [-Wunused-variable] int rat, in1,in4; ^ src/sff.c:669:44: warning: unused variable 'e3' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:669:41: warning: unused variable 'e2' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:669:38: warning: unused variable 'e1' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:669:35: warning: unused variable 'd3' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:669:32: warning: unused variable 'd2' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:669:29: warning: unused variable 'd1' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c: At top level: src/sff.c:815:5: warning: function declaration isn't a prototype [-Wstrict-prototypes] int nblist( x, npairs, pairlist, prm, cut, maxnb, frozen ) ^ src/sff.c: In function 'nblist': src/sff.c:828:9: warning: unused variable 'npairlist' [-Wunused-variable] int *npairlist; ^ src/sff.c:825:43: warning: unused variable 'jrescut' [-Wunused-variable] int k,jrp,jrp2,kpr, nbdist=0, irescut, jrescut; ^ src/sff.c:825:34: warning: unused variable 'irescut' [-Wunused-variable] int k,jrp,jrp2,kpr, nbdist=0, irescut, jrescut; ^ src/sff.c: At top level: src/sff.c:940:5: warning: function declaration isn't a prototype [-Wstrict-prototypes] int nblistBH( x, npairs, pairlist, prm, cut, maxnb, frozen ) ^ src/sff.c: In function 'nblistBH': src/sff.c:951:9: warning: unused variable 'npairlist' [-Wunused-variable] int *npairlist; ^ src/sff.c:947:18: warning: unused variable 'rrw' [-Wunused-variable] _REAL dx,dy,dz,rrw; ^ src/sff.c:947:15: warning: unused variable 'dz' [-Wunused-variable] _REAL dx,dy,dz,rrw; ^ src/sff.c:947:12: warning: unused variable 'dy' [-Wunused-variable] _REAL dx,dy,dz,rrw; ^ src/sff.c:947:9: warning: unused variable 'dx' [-Wunused-variable] _REAL dx,dy,dz,rrw; ^ src/sff.c: At top level: src/sff.c:1085:5: warning: function declaration isn't a prototype [-Wstrict-prototypes] int nbond( npairs, pairlist, x, f, enb, eel, ehb, enbfac, eelfac, prm, dield ) ^ src/sff.c: In function 'nbond': src/sff.c:1095:49: warning: unused variable 'eelt' [-Wunused-variable] _REAL dumx,dumy,dumz,cgi,xw1,xw2,xw3,r2inv,df2,eelt,r6,r10,f1,f2; ^ src/sff.c: In function 'getTor': src/sff.c:1298:19: warning: unused variable 'dum' [-Wunused-variable] _REAL eth, eta, dum; ^ src/sff.c: In function 'mme': src/sff.c:1340:79: warning: variable 'dum' set but not used [-Wunused-but-set-variable] _REAL ebh, eba, eth, eta, eph, epa, enb, ehb, eel, enb14, eel14, ecn, frms, dum; ^ src/sff.c: At top level: src/sff.c:1521:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL ebond4( nbond, a1, a2, atype, Rk, Req, x, f ) ^ src/sff.c:1555:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL eangl4( nang, a1, a2, a3, atype, Tk, Teq, x, f ) ^ src/sff.c:1634:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL ephi4( nphi, a1, a2, a3, a4, atype, Pk, Pn, Phase, x, f ) ^ src/sff.c: In function 'ephi4': src/sff.c:1643:44: warning: unused variable 'e3' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:1643:41: warning: unused variable 'e2' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:1643:38: warning: unused variable 'e1' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:1643:35: warning: unused variable 'd3' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:1643:32: warning: unused variable 'd2' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c:1643:29: warning: unused variable 'd1' [-Wunused-variable] _REAL df,aa,bb,cc,ab,bc,ac,d1,d2,d3,e1,e2,e3,ktot; ^ src/sff.c: At top level: src/sff.c:1794:5: warning: function declaration isn't a prototype [-Wstrict-prototypes] int nblist4( x, npairs, pairlist, prm, cut, maxnb, frozen ) ^ src/sff.c:1888:5: warning: function declaration isn't a prototype [-Wstrict-prototypes] int nbond4( npairs, pairlist, x, f, enb, eel, enbfac, eelfac, prm ) ^ src/sff.c: In function 'nbond4': src/sff.c:1898:58: warning: unused variable 'eelt' [-Wunused-variable] _REAL dumx,dumy,dumz,dumw,cgi,xw1,xw2,xw3,xw4,r2inv,df2,eelt,r6,f1,f2; ^ src/sff.c: At top level: src/sff.c:1971:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL mme4( x, f, iter, prm, opts ) ^ src/sff.c: In function 'mme4': src/sff.c:1979:7: warning: variable 'nb_pairs' set but not used [-Wunused-but-set-variable] int nb_pairs; ^ src/sff.c: At top level: src/sff.c:2063:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] int get_masses( minv, prm , dim) ^ src/sff.c: In function 'md': src/sff.c:2088:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] _REAL ( *mme )(); ^ src/sff.c:2097:19: warning: unused variable 'k' [-Wunused-variable] int nstep, i, k; ^ src/sff.c:2096:50: warning: variable 'etot' set but not used [-Wunused-but-set-variable] _REAL dtx, dt5, rndf, dttp, ekin0, ekin, epot, etot, tscal, temp, sd; ^ src/sff.c:2096:14: warning: variable 'dt5' set but not used [-Wunused-but-set-variable] _REAL dtx, dt5, rndf, dttp, ekin0, ekin, epot, etot, tscal, temp, sd; ^ src/sff.c: At top level: src/sff.c:2192:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] int mme_timer() ^ src/sff.c: In function 'nbond': src/sff.c:1267:16: warning: 'df2' may be used uninitialized in this function [-Wmaybe-uninitialized] df = (df2+(10.*f2-12.*f1)*enbfaci)*r2inv; ^ aarch64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c sff/prmlib_wrap.c -o build/temp.linux-aarch64-2.7/sff/prmlib_wrap.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1728:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:15, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/oldnumeric.h:1, from sff/prmlib_wrap.c:2979: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" ^ In file included from sff/prmlib_wrap.c:2980:0: src/prm.h:84:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_initCallbacks(); ^ src/prm.h:87:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] void mme_cleanup(); ^ sff/prmlib_wrap.c: In function 'set_callback': sff/prmlib_wrap.c:3350:9: warning: unused variable 'name' [-Wunused-variable] char *name; ^ sff/prmlib_wrap.c:3349:7: warning: unused variable 'n' [-Wunused-variable] int n, freq=1, which; ^ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -Wformat -Werror=format-security build/temp.linux-aarch64-2.7/src/bhtree.o build/temp.linux-aarch64-2.7/src/binpos.o build/temp.linux-aarch64-2.7/src/memutil.o build/temp.linux-aarch64-2.7/src/rand2.o build/temp.linux-aarch64-2.7/src/conjgrad.o build/temp.linux-aarch64-2.7/src/prm.o build/temp.linux-aarch64-2.7/src/sff.o build/temp.linux-aarch64-2.7/sff/prmlib_wrap.o -lm -o build/lib.linux-aarch64-2.7/sff/_prmlib.so dh_auto_test -a /usr/bin/fakeroot debian/rules binary-arch dh binary-arch --with python2 dh_testroot -a dh_prep -a dh_auto_install -a running install running build running build_py running build_ext running install_lib creating /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr creating /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib creating /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7 creating /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages creating /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff creating /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff/Tests copying build/lib.linux-aarch64-2.7/sff/Tests/test_dependencies.py -> /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff/Tests copying build/lib.linux-aarch64-2.7/sff/Tests/p1H_crd.py -> /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff/Tests copying build/lib.linux-aarch64-2.7/sff/Tests/tripepparmdict.py -> /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff/Tests copying build/lib.linux-aarch64-2.7/sff/Tests/test.py -> /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff/Tests copying build/lib.linux-aarch64-2.7/sff/Tests/__init__.py -> /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff/Tests copying build/lib.linux-aarch64-2.7/sff/amber.py -> /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff copying build/lib.linux-aarch64-2.7/sff/__init__.py -> /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff copying build/lib.linux-aarch64-2.7/sff/_prmlib.so -> /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff running install_data copying sff/Tests/p1H.pdb -> /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff/Tests copying sff/Tests/tripeptide.prm -> /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff/Tests running install_egg_info Writing /build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519/debian/mgltools-sff/usr/lib/python2.7/dist-packages/sff-1.5.6.egg-info debian/rules override_dh_install make[1]: Entering directory `/build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519' dh_install dh_numpy make[1]: Leaving directory `/build/buildd/mgltools-sff-1.5.7~rc1~cvs.20130519' dh_installdocs -a dh_installchangelogs -a dh_python2 -a dh_perl -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform arm64: mgltools-sff dh_strip debug symbol extraction: packages to act on: mgltools-sff dh_strip debug symbol extraction: ignored packages: dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package mgltools-sff: unknown substitution variable ${python:Versions} dpkg-deb: building package `mgltools-sff-dbgsym' in `../mgltools-sff-dbgsym_1.5.7~rc1~cvs.20130519-2_arm64.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 118 pkgstriptranslations: processing mgltools-sff (in debian/mgltools-sff); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/mgltools-sff/DEBIAN/control, package mgltools-sff, directory debian/mgltools-sff pkgstripfiles: Truncating usr/share/doc/mgltools-sff/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package mgltools-sff took 0 s dpkg-deb: warning: 'debian/mgltools-sff/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: 'debian/mgltools-sff/DEBIAN/control' contains user-defined field 'Python-Version' dpkg-deb: warning: ignoring 2 warnings about the control file(s) dpkg-deb: building package `mgltools-sff' in `../mgltools-sff_1.5.7~rc1~cvs.20130519-2_arm64.deb'. dpkg-genchanges -B -mUbuntu Build Daemon >../mgltools-sff_1.5.7~rc1~cvs.20130519-2_arm64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build mgltools-sff-1.5.7~rc1~cvs.20130519 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20131026-1045 Publishing debug debs. chroot-autobuild/build/buildd/mgltools-sff_1.5.7~rc1~cvs.20130519-2_arm64.deb: new debian package, version 2.0. size 80556 bytes: control archive=1564 bytes. 1206 bytes, 24 lines control 1049 bytes, 14 lines md5sums 162 bytes, 9 lines * postinst #!/bin/sh 261 bytes, 14 lines * prerm #!/bin/sh Package: mgltools-sff Version: 1.5.7~rc1~cvs.20130519-2 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 332 Depends: libc6 (>= 2.17), python-numpy (>= 1:1.7-0~b1), python-numpy-abi9, python (>= 2.7), python (<< 2.8), python:any (>= 2.7.1-0ubuntu2), mgltools-bhtree Enhances: autodocktools Section: non-free/science Priority: optional Homepage: http://mgltools.scripps.edu/ Description: Simple Force Field for Python This package is part of the mgltools set of Python libraries which provide an infrastructure for the analysis of protein structures and their docking of chemical compounds. . It implements an Amber force field with an interface to a molecular dynamics engine. SFF stands for simple force field. It is a C implementation of the amber force field made by Tom Macke and David Case. . This package exposes a wrapped version of the prm structure which holds the Amber parameters needed for an Amber calculation. It also exposes the mme and md functions to perform molecular mechanics and dynamics respectively. Python-Version: 2.7 chroot-autobuild/build/buildd/mgltools-sff_1.5.7~rc1~cvs.20130519-2_arm64.deb: drwxr-xr-x root/root 0 2013-10-26 10:45 ./ drwxr-xr-x root/root 0 2013-10-26 10:45 ./usr/ drwxr-xr-x root/root 0 2013-10-26 10:45 ./usr/share/ drwxr-xr-x root/root 0 2013-10-26 10:45 ./usr/share/doc/ drwxr-xr-x root/root 0 2013-10-26 10:45 ./usr/share/doc/mgltools-sff/ -rw-r--r-- root/root 874 2013-10-26 10:45 ./usr/share/doc/mgltools-sff/changelog.Debian.gz -rw-r--r-- root/root 1417 2011-04-26 12:14 ./usr/share/doc/mgltools-sff/README.Debian -rw-r--r-- root/root 5989 2013-05-31 17:09 ./usr/share/doc/mgltools-sff/copyright drwxr-xr-x root/root 0 2013-10-26 10:45 ./usr/share/pyshared/ drwxr-xr-x root/root 0 2013-10-26 10:45 ./usr/share/pyshared/sff/ drwxr-xr-x root/root 0 2013-10-26 10:45 ./usr/share/pyshared/sff/Tests/ -rw-r--r-- root/root 838 2006-03-15 21:45 ./usr/share/pyshared/sff/Tests/test_dependencies.py -rw-r--r-- root/root 1055 2004-06-15 17:10 ./usr/share/pyshared/sff/Tests/p1H_crd.py -rw-r--r-- root/root 3534 2004-06-15 17:10 ./usr/share/pyshared/sff/Tests/p1H.pdb -rw-r--r-- root/root 15331 2004-06-15 17:10 ./usr/share/pyshared/sff/Tests/tripepparmdict.py -rw-r--r-- root/root 4955 2007-07-30 20:21 ./usr/share/pyshared/sff/Tests/test.py -rw-r--r-- root/root 16014 2004-06-15 17:10 ./usr/share/pyshared/sff/Tests/tripeptide.prm -rw-r--r-- root/root 1 2004-06-15 17:10 ./usr/share/pyshared/sff/Tests/__init__.py -rw-r--r-- root/root 15007 2007-07-30 20:21 ./usr/share/pyshared/sff/amber.py -rw-r--r-- root/root 144 2006-03-09 22:03 ./usr/share/pyshared/sff/__init__.py -rw-r--r-- root/root 336 2013-10-26 10:45 ./usr/share/pyshared/sff-1.5.6.egg-info drwxr-xr-x root/root 0 2013-10-26 10:45 ./usr/lib/ drwxr-xr-x root/root 0 2013-10-26 10:45 ./usr/lib/python2.7/ drwxr-xr-x root/root 0 2013-10-26 10:45 ./usr/lib/python2.7/dist-packages/ drwxr-xr-x root/root 0 2013-10-26 10:45 ./usr/lib/python2.7/dist-packages/sff/ drwxr-xr-x root/root 0 2013-10-26 10:45 ./usr/lib/python2.7/dist-packages/sff/Tests/ -rw-r--r-- root/root 202704 2013-10-26 10:45 ./usr/lib/python2.7/dist-packages/sff/_prmlib.so drwxr-xr-x root/root 0 2013-10-26 10:45 ./usr/lib/pyshared/ drwxr-xr-x root/root 0 2013-10-26 10:45 ./usr/lib/pyshared/python2.7/ drwxr-xr-x root/root 0 2013-10-26 10:45 ./usr/lib/pyshared/python2.7/sff/ lrwxrwxrwx root/root 0 2013-10-26 10:45 ./usr/lib/python2.7/dist-packages/sff/Tests/test_dependencies.py -> ../../../../../share/pyshared/sff/Tests/test_dependencies.py lrwxrwxrwx root/root 0 2013-10-26 10:45 ./usr/lib/python2.7/dist-packages/sff/Tests/p1H_crd.py -> ../../../../../share/pyshared/sff/Tests/p1H_crd.py lrwxrwxrwx root/root 0 2013-10-26 10:45 ./usr/lib/python2.7/dist-packages/sff/Tests/p1H.pdb -> ../../../../../share/pyshared/sff/Tests/p1H.pdb lrwxrwxrwx root/root 0 2013-10-26 10:45 ./usr/lib/python2.7/dist-packages/sff/Tests/tripepparmdict.py -> ../../../../../share/pyshared/sff/Tests/tripepparmdict.py lrwxrwxrwx root/root 0 2013-10-26 10:45 ./usr/lib/python2.7/dist-packages/sff/Tests/test.py -> ../../../../../share/pyshared/sff/Tests/test.py lrwxrwxrwx root/root 0 2013-10-26 10:45 ./usr/lib/python2.7/dist-packages/sff/Tests/tripeptide.prm -> ../../../../../share/pyshared/sff/Tests/tripeptide.prm lrwxrwxrwx root/root 0 2013-10-26 10:45 ./usr/lib/python2.7/dist-packages/sff/Tests/__init__.py -> ../../../../../share/pyshared/sff/Tests/__init__.py lrwxrwxrwx root/root 0 2013-10-26 10:45 ./usr/lib/python2.7/dist-packages/sff/amber.py -> ../../../../share/pyshared/sff/amber.py lrwxrwxrwx root/root 0 2013-10-26 10:45 ./usr/lib/python2.7/dist-packages/sff/__init__.py -> ../../../../share/pyshared/sff/__init__.py lrwxrwxrwx root/root 0 2013-10-26 10:45 ./usr/lib/python2.7/dist-packages/sff-1.5.6.egg-info -> ../../../share/pyshared/sff-1.5.6.egg-info lrwxrwxrwx root/root 0 2013-10-26 10:45 ./usr/lib/pyshared/python2.7/sff/_prmlib.so -> ../../../python2.7/dist-packages/sff/_prmlib.so mgltools-sff_1.5.7~rc1~cvs.20130519-2_arm64.changes: Format: 1.8 Date: Sat, 03 Aug 2013 16:00:00 +0200 Source: mgltools-sff Binary: mgltools-sff Architecture: arm64 Version: 1.5.7~rc1~cvs.20130519-2 Distribution: trusty-proposed Urgency: low Maintainer: Ubuntu Build Daemon Changed-By: Thorsten Alteholz Description: mgltools-sff - Simple Force Field for Python Changes: mgltools-sff (1.5.7~rc1~cvs.20130519-2) unstable; urgency=low . * new upload with different debian version (due to missing bhtree) Checksums-Sha1: a5da5452b0c4fd4ca69ed67e1d87d5e9e8b59323 80556 mgltools-sff_1.5.7~rc1~cvs.20130519-2_arm64.deb Checksums-Sha256: 813646cbdef9b492549e99603491536bc2a9fb171b6a0d7c2303a4aaf91389c1 80556 mgltools-sff_1.5.7~rc1~cvs.20130519-2_arm64.deb Files: 5ac6b335a621d31743e0f481de85a3cd 80556 non-free/science optional mgltools-sff_1.5.7~rc1~cvs.20130519-2_arm64.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20131026-1045 Build needed 00:00:27, 3444k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-5140645'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-5140645/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-5140645'] Unmounting chroot for build PACKAGEBUILD-5140645... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-5140645'] Removing build PACKAGEBUILD-5140645