Start-Date: 2015-10-10 15:09:06 Commandline: apt-get install build-essential python-dev python-pip Install: libpython-dev:amd64 (2.7.5-5ubuntu3, automatic), libexpat1-dev:amd64 (2.1.0-4ubuntu1.1, automatic), python-dev:amd64 (2.7.5-5ubuntu3), libpython2.7-dev:amd64 (2.7.6-8ubuntu0.2, automatic), python2.7-dev:amd64 (2.7.6-8ubuntu0.2, automatic) End-Date: 2015-10-10 15:09:15 Start-Date: 2015-10-10 16:15:01 Commandline: apt-get install ghc Install: libbsd-dev:amd64 (0.6.0-2ubuntu1, automatic), libgmpxx4ldbl:amd64 (5.1.3+dfsg-1ubuntu1, automatic), libgmp-dev:amd64 (5.1.3+dfsg-1ubuntu1, automatic), ghc:amd64 (7.6.3-10), libffi-dev:amd64 (3.1~rc1+r3.0.13-12, automatic) End-Date: 2015-10-10 16:15:13 Start-Date: 2015-10-10 16:53:15 Commandline: apt-get install libhdf5-dev Install: libhdf5-dev:amd64 (1.8.11-5ubuntu7), libhdf5-7:amd64 (1.8.11-5ubuntu7, automatic), hdf5-helpers:amd64 (1.8.11-5ubuntu7, automatic) End-Date: 2015-10-10 16:53:19 Start-Date: 2015-10-10 17:03:34 Commandline: apt-get install libfreetype6 libfreetype6-dev Install: libfreetype6-dev:amd64 (2.5.2-1ubuntu2.5) End-Date: 2015-10-10 17:03:36 Start-Date: 2015-10-10 17:34:16 Commandline: apt-get install r-base Upgrade: r-base:amd64 (3.0.2-1ubuntu1, 3.2.2-1trusty0), r-recommended:amd64 (3.0.2-1ubuntu1, 3.2.2-1trusty0), r-base-core:amd64 (3.0.2-1ubuntu1, 3.2.2-1trusty0) End-Date: 2015-10-10 17:34:27 Start-Date: 2015-10-10 17:47:04 Commandline: apt-get install r-base-dev Install: liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2, automatic) Upgrade: r-base-dev:amd64 (3.0.2-1ubuntu1, 3.2.2-1trusty0) End-Date: 2015-10-10 17:47:06 Start-Date: 2015-10-10 18:23:55 Commandline: apt-get upgrade Upgrade: r-base-html:amd64 (3.0.2-1ubuntu1, 3.2.2-1trusty0), oxideqt-codecs-extra:amd64 (1.9.1-0ubuntu0.14.04.2, 1.9.5-0ubuntu0.14.04.1), r-cran-lattice:amd64 (0.20-24-1, 0.20-33-1trusty0), firefox-locale-en:amd64 (41.0+build3-0ubuntu0.14.04.1, 41.0.1+build2-0ubuntu0.14.04.1), google-chrome-stable:amd64 (45.0.2454.99-1, 45.0.2454.101-1), r-cran-spatial:amd64 (7.3-7-1, 7.3-10-1trusty0), dkms:amd64 (2.2.0.3-1.1ubuntu5.14.04.2, 2.2.0.3-1.1ubuntu5.14.04.5), firefox-locale-hi:amd64 (41.0+build3-0ubuntu0.14.04.1, 41.0.1+build2-0ubuntu0.14.04.1), libcuda1-346:amd64 (346.82-0ubuntu0.2, 346.96-0ubuntu0.0.1), thunderbird-locale-en-us:amd64 (38.2.0+build1-0ubuntu0.14.04.1, 38.3.0+build1-0ubuntu0.14.04.1), r-cran-cluster:amd64 (1.14.4-1, 2.0.3-1trusty0), thunderbird:amd64 (38.2.0+build1-0ubuntu0.14.04.1, 38.3.0+build1-0ubuntu0.14.04.1), firefox:amd64 (41.0+build3-0ubuntu0.14.04.1, 41.0.1+build2-0ubuntu0.14.04.1), r-cran-boot:amd64 (1.3-9-1, 1.3-17-1trusty0), chromium-codecs-ffmpeg-extra:amd64 (45.0.2454.85-0ubuntu0.14.0 4.1.1097, 45.0.2454.101-0ubuntu0.14.04.1.1099), r-cran-kernsmooth:amd64 (2.23-10-2, 2.23-15-1trusty0), firefox-locale-or:amd64 (41.0+build3-0ubuntu0.14.04.1, 41.0.1+build2-0ubuntu0.14.04.1), r-cran-mgcv:amd64 (1.7-28-1, 1.8-7-1trusty0), r-cran-matrix:amd64 (1.1-2-1, 1.2-2-1trusty0), nvidia-346:amd64 (346.82-0ubuntu0.2, 346.96-0ubuntu0.0.1), r-cran-codetools:amd64 (0.2-8-2, 0.2-14-1~ubuntu14.04.1~ppa1), r-cran-nlme:amd64 (3.1.113-1, 3.1.122-1trusty0), nvidia-libopencl1-346:amd64 (346.82-0ubuntu0.2, 346.96-0ubuntu0.0.1), chromium-browser-l10n:amd64 (45.0.2454.85-0ubuntu0.14.04.1.1097, 45.0.2454.101-0ubuntu0.14.04.1.1099), thunderbird-locale-en:amd64 (38.2.0+build1-0ubuntu0.14.04.1, 38.3.0+build1-0ubuntu0.14.04.1), liboxideqtcore0:amd64 (1.9.1-0ubuntu0.14.04.2, 1.9.5-0ubuntu0.14.04.1), thunderbird-gnome-support:amd64 (38.2.0+build1-0ubuntu0.14.04.1, 38.3.0+build1-0ubuntu0.14.04.1), nvidia-opencl-icd-346:amd64 (346.82-0ubuntu0.2, 346.96-0ubuntu0.0.1), r-cran-foreign:amd64 (0.8.59-1, 0.8.66-1trusty0), liboxideqtq uick0:amd64 (1.9.1-0ubuntu0.14.04.2, 1.9.5-0ubuntu0.14.04.1), r-doc-html:amd64 (3.0.2-1ubuntu1, 3.2.2-1trusty0), liboxideqt-qmlplugin:amd64 (1.9.1-0ubuntu0.14.04.2, 1.9.5-0ubuntu0.14.04.1), r-cran-class:amd64 (7.3-9-1, 7.3-14-1trusty0), r-cran-rpart:amd64 (4.1-5-1, 4.1-10-1trusty0), r-cran-mass:amd64 (7.3-29-1, 7.3-44-1trusty0), linux-libc-dev:amd64 (3.13.0-63.103, 3.13.0-65.106), r-cran-nnet:amd64 (7.3-7-1, 7.3-11-1trusty0), chromium-browser:amd64 (45.0.2454.85-0ubuntu0.14.04.1.1097, 45.0.2454.101-0ubuntu0.14.04.1.1099), r-cran-survival:amd64 (2.37-7-1, 2.38-3-1trusty0), thunderbird-locale-en-gb:amd64 (38.2.0+build1-0ubuntu0.14.04.1, 38.3.0+build1-0ubuntu0.14.04.1) End-Date: 2015-10-10 18:26:16 Start-Date: 2015-10-10 18:35:09 Commandline: apt-get install subversion Install: subversion:amd64 (1.8.8-1ubuntu3.2), libaprutil1:amd64 (1.5.3-1, automatic), libsvn1:amd64 (1.8.8-1ubuntu3.2, automatic), libapr1:amd64 (1.5.0-1, automatic), libserf-1-1:amd64 (1.3.3-1ubuntu0.1, automatic) End-Date: 2015-10-10 18:35:15 Start-Date: 2015-10-10 19:51:51 Commandline: apt-get install mgltools-cadd Install: libqhull6:amd64 (2012.1-4, automatic), idle-python2.7:amd64 (2.7.6-8ubuntu0.2, automatic), mgltools-webservices:amd64 (1.5.7~rc1~cvs.20130519-1, automatic), mgltools-support:amd64 (1.5.7~rc1~cvs.20130519-1, automatic), python-zsi:amd64 (2.1~a1-3build1, automatic), mgltools-cadd:amd64 (1.5.7~rc1~cvs.20130519-2), mgltools-bhtree:amd64 (1.5.7~rc1~cvs.20130519-1, automatic), mgltools-networkeditor:amd64 (1.5.7~rc1~cvs.20130519-1, automatic), qhull-bin:amd64 (2012.1-4, automatic), mgltools-mglutil:amd64 (1.5.7~rc1~cvs.20130519-1, automatic), mgltools-sff:amd64 (1.5.7~rc1~cvs.20130519-2, automatic), mgltools-vision:amd64 (1.5.7~rc1~cvs.20130519-1, automatic), idle:amd64 (2.7.5-5ubuntu3, automatic) End-Date: 2015-10-10 19:52:12 Start-Date: 2015-10-10 20:59:52 Commandline: apt-get install torcs Install: libalut0:amd64 (1.1.0-3ubuntu1, automatic), libplib1:amd64 (1.8.5-7, automatic), torcs-data-tracks:amd64 (1.3.3-5ubuntu1, automatic), torcs-data:amd64 (1.3.3-5ubuntu1, automatic), torcs-data-cars:amd64 (1.3.3-5ubuntu1, automatic), torcs:amd64 (1.3.3-5ubuntu1) End-Date: 2015-10-10 21:00:07 Start-Date: 2015-10-12 10:58:41 Commandline: apt-get autoremove Remove: libtk8.5:amd64 (8.5.15-2ubuntu3), libtcl8.5:amd64 (8.5.15-2ubuntu1), tk8.5:amd64 (8.5.15-2ubuntu3), tcl8.5:amd64 (8.5.15-2ubuntu1) End-Date: 2015-10-12 10:58:50 Start-Date: 2015-10-12 11:33:54 Commandline: apt-get remove --purge nvidia-* Purge: nvidia-settings:amd64 (331.20-0ubuntu8), nvidia-346:amd64 (346.96-0ubuntu0.0.1), nvidia-libopencl1-346:amd64 (346.96-0ubuntu0.0.1), nvidia-opencl-icd-346:amd64 (346.96-0ubuntu0.0.1), nvidia-prime:amd64 (0.6.2) End-Date: 2015-10-12 11:34:25 Start-Date: 2015-10-12 11:44:27 Commandline: aptdaemon role='role-commit-packages' sender=':1.141' Upgrade: libmotif-common:amd64 (2.3.4-5, 2.3.4-5ubuntu0.1), libhunspell-1.3-0:amd64 (1.3.2-6ubuntu2, 1.3.2-6ubuntu2.1), libgl1-mesa-dev:amd64 (10.1.3-0ubuntu0.4, 10.1.3-0ubuntu0.5), libxm4:amd64 (2.3.4-5, 2.3.4-5ubuntu0.1), python3-software-properties:amd64 (0.92.37.3, 0.92.37.5), ubuntu-release-upgrader-gtk:amd64 (0.220.7, 0.220.8), libcgmanager0:amd64 (0.24-0ubuntu7.3, 0.24-0ubuntu7.5), libuil4:amd64 (2.3.4-5, 2.3.4-5ubuntu0.1), python3-distupgrade:amd64 (0.220.7, 0.220.8), libgbm1:amd64 (10.1.3-0ubuntu0.4, 10.1.3-0ubuntu0.5), python-tz:amd64 (2012c-1build1, 2012c-1ubuntu0.1), mesa-common-dev:amd64 (10.1.3-0ubuntu0.4, 10.1.3-0ubuntu0.5), software-properties-common:amd64 (0.92.37.3, 0.92.37.5), libmrm4:amd64 (2.3.4-5, 2.3.4-5ubuntu0.1), ubuntu-release-upgrader-core:amd64 (0.220.7, 0.220.8), software-properties-gtk:amd64 (0.92.37.3, 0.92.37.5) End-Date: 2015-10-12 11:45:14 Start-Date: 2015-10-12 19:11:59 Commandline: apt-get remove linux-image-3.19.0-28-generic Remove: linux-image-extra-3.19.0-28-generic:amd64 (3.19.0-28.30~14.04.1), linux-image-3.19.0-28-generic:amd64 (3.19.0-28.30~14.04.1) End-Date: 2015-10-12 19:13:00 Start-Date: 2015-10-12 19:21:14 Commandline: apt-get upgrade Upgrade: update-manager-core:amd64 (0.196.13, 0.196.14), python3-update-manager:amd64 (0.196.13, 0.196.14), update-manager:amd64 (0.196.13, 0.196.14) End-Date: 2015-10-12 19:21:22 Start-Date: 2015-10-12 19:28:59 Commandline: apt-get autoremove Remove: screen-resolution-extra:amd64 (0.17.1), lib32gcc1:amd64 (4.9.1-0ubuntu1), libcuda1-346:amd64 (346.96-0ubuntu0.0.1), bbswitch-dkms:amd64 (0.7-2ubuntu1), libc6-i386:amd64 (2.19-0ubuntu6.6) End-Date: 2015-10-12 19:29:09 Start-Date: 2015-10-12 19:35:15 Commandline: apt-get install linux-image-3.19.0-30-generic Install: linux-image-3.19.0-30-generic:amd64 (3.19.0-30.34~14.04.1) End-Date: 2015-10-12 19:35:25 Start-Date: 2015-10-12 19:38:25 Commandline: apt-get install linux-image-3.19.0-30-generic linux-headers-3.19.0-30-generic Install: linux-headers-3.19.0-30-generic:amd64 (3.19.0-30.34~14.04.1), linux-headers-3.19.0-30:amd64 (3.19.0-30.34~14.04.1, automatic) End-Date: 2015-10-12 19:39:08 Start-Date: 2015-10-12 19:51:18 Commandline: apt-get remove linux-image-3.19.0-30-generic Remove: linux-image-3.19.0-30-generic:amd64 (3.19.0-30.34~14.04.1) End-Date: 2015-10-12 19:51:34 Start-Date: 2015-10-12 19:58:29 Commandline: apt-get remove virtualbox virtualbox-dkms Remove: virtualbox:amd64 (4.3.10-dfsg-1ubuntu5), virtualbox-dkms:amd64 (4.3.10-dfsg-1ubuntu5), virtualbox-qt:amd64 (4.3.10-dfsg-1ubuntu5) End-Date: 2015-10-12 19:59:10 Start-Date: 2015-10-12 20:10:17 Commandline: apt-get install virtualbox Install: virtualbox:amd64 (4.3.10-dfsg-1ubuntu5), virtualbox-dkms:amd64 (4.3.10-dfsg-1ubuntu5, automatic), virtualbox-qt:amd64 (4.3.10-dfsg-1ubuntu5, automatic) End-Date: 2015-10-12 20:11:16 Start-Date: 2015-10-13 12:40:55 Commandline: apt-get install playonlinux Install: liblqr-1-0:amd64 (0.4.1-2ubuntu1, automatic), p7zip-full:amd64 (9.20.1~dfsg.1-4+deb7u1build0.14.04.1, automatic), libnetpbm10:amd64 (10.0-15ubuntu2, automatic), python-wxgtk2.8:amd64 (2.8.12.1+dfsg-2ubuntu2, automatic), libmagickcore5-extra:amd64 (6.7.7.10-6ubuntu3, automatic), libwxgtk-media2.8-0:amd64 (2.8.12.1+dfsg-2ubuntu2, automatic), libmagickwand5:amd64 (6.7.7.10-6ubuntu3, automatic), playonlinux:amd64 (4.2.9), icoutils:amd64 (0.31.0-2, automatic), imagemagick:amd64 (6.7.7.10-6ubuntu3, automatic), netpbm:amd64 (10.0-15ubuntu2, automatic), libmagickcore5:amd64 (6.7.7.10-6ubuntu3, automatic), imagemagick-common:amd64 (6.7.7.10-6ubuntu3, automatic), python-wxversion:amd64 (2.8.12.1+dfsg-2ubuntu2, automatic) End-Date: 2015-10-13 12:41:23 Start-Date: 2015-10-13 13:27:33 Commandline: apt-get install wine Install: libdb5.3:i386 (5.3.28-3ubuntu3, automatic), libedit2:i386 (3.1-20130712-2, automatic), libjack-jackd2-0:i386 (1.9.9.5+20130622git7de15e7a-1ubuntu1, automatic), libgl1-mesa-dri-lts-vivid:i386 (10.5.9-2ubuntu1~trusty2, automatic), libtinfo5:i386 (5.9+20140118-1ubuntu1, automatic), libgl1-mesa-glx-lts-vivid:i386 (10.5.9-2ubuntu1~trusty2, automatic), libsasl2-modules-db:i386 (2.1.25.dfsg1-17build1, automatic), libxcb-dri2-0:i386 (1.10-2ubuntu1, automatic), liblcms2-2:i386 (2.5-0ubuntu4, automatic), gcc-4.8-base:i386 (4.8.4-2ubuntu1~14.04, automatic), libglapi-mesa-lts-vivid:i386 (10.5.9-2ubuntu1~trusty2, automatic), unixodbc:amd64 (2.2.14p2-5ubuntu5, automatic), libxfixes3:i386 (5.0.1-1ubuntu1.1, automatic), libjpeg-turbo8:i386 (1.3.0-0ubuntu2, automatic), libxau6:i386 (1.0.8-1, automatic), libaio1:amd64 (0.3.109-4, automatic), libpciaccess0:i386 (0.13.2-1, automatic), libssl1.0.0:i386 (1.0.1f-1ubuntu2.15, automatic), libxext6:i386 (1.3.2-1ubuntu0.0.14.04.1, automatic), libspeexdsp1:i386 (1.2~rc1.1-1ubu ntu1, automatic), libice6:i386 (1.0.8-2, automatic), libltdl7:i386 (2.4.2-1.7ubuntu1, automatic), libgssapi-krb5-2:i386 (1.12+dfsg-2ubuntu5.1, automatic), libx11-xcb1:i386 (1.6.2-1ubuntu2, automatic), fonts-wqy-microhei:amd64 (0.2.0-beta-2, automatic), winbind:amd64 (4.1.6+dfsg-1ubuntu2.14.04.9, automatic), libkrb5-26-heimdal:i386 (1.6~git20131207+dfsg-1ubuntu1.1, automatic), libxi6:i386 (1.7.1.901-1ubuntu1.1, automatic), libroken18-heimdal:i386 (1.6~git20131207+dfsg-1ubuntu1.1, automatic), libpng12-0:i386 (1.2.50-1ubuntu2, automatic), libncurses5:i386 (5.9+20140118-1ubuntu1, automatic), libgif4:i386 (4.1.6-11, automatic), libdrm-intel1:i386 (2.4.60-2~ubuntu14.04.1, automatic), libxcursor1:i386 (1.1.14-1, automatic), libkrb5-3:i386 (1.12+dfsg-2ubuntu5.1, automatic), libnih-dbus1:i386 (1.0.3-4ubuntu25, automatic), libllvm3.6:i386 (3.6-2ubuntu1~trusty1, automatic), libwind0-heimdal:i386 (1.6~git20131207+dfsg-1ubuntu1.1, automatic), libfontconfig1:i386 (2.11.0-0ubuntu4.1, automatic), python-dnspython:amd64 (1.1 1.1-1build1, automatic), libsm6:i386 (1.2.1-2, automatic), libcups2:i386 (1.7.2-0ubuntu1.6, automatic), libtiff5:i386 (4.0.3-7ubuntu0.3, automatic), libcomerr2:i386 (1.42.9-3ubuntu1.3, automatic), libselinux1:i386 (2.2.2-1ubuntu0.1, automatic), libjson-c2:i386 (0.11-3ubuntu1.2, automatic), libhcrypto4-heimdal:i386 (1.6~git20131207+dfsg-1ubuntu1.1, automatic), wine1.6-i386:i386 (1.6.2-0ubuntu4, automatic), tdb-tools:amd64 (1.2.12-1, automatic), libdrm-radeon1:i386 (2.4.60-2~ubuntu14.04.1, automatic), samba:amd64 (4.1.6+dfsg-1ubuntu2.14.04.9, automatic), libheimntlm0-heimdal:i386 (1.6~git20131207+dfsg-1ubuntu1.1, automatic), libopenal1:i386 (1.14-4ubuntu1, automatic), libfreetype6:i386 (2.5.2-1ubuntu2.5, automatic), libxcb1:i386 (1.10-2ubuntu1, automatic), p7zip:amd64 (9.20.1~dfsg.1-4+deb7u1build0.14.04.1, automatic), libcapi20-3:amd64 (3.25+dfsg1-3.3ubuntu2, automatic), libcapi20-3:i386 (3.25+dfsg1-3.3ubuntu2, automatic), ttf-wqy-microhei:amd64 (0.2.0-beta-2, automatic), libieee1284-3:i386 (0.2.11-12, automat ic), libcgmanager0:i386 (0.24-0ubuntu7.5, automatic), libgcc1:i386 (4.9.1-0ubuntu1, automatic), libc6:i386 (2.19-0ubuntu6.6, automatic), libexif12:i386 (0.6.21-1ubuntu1, automatic), libglib2.0-0:i386 (2.40.2-0ubuntu1, automatic), libhdb9-heimdal:amd64 (1.6~git20131207+dfsg-1ubuntu1.1, automatic), wine:amd64 (1.6.2-0ubuntu4), libuuid1:i386 (2.20.1-5.1ubuntu20.7, automatic), libxt6:i386 (1.1.4-1, automatic), winetricks:amd64 (0.0+20140302-0ubuntu2, automatic), libvpx1:i386 (1.3.0-2, automatic), libtxc-dxtn-s2tc0:i386 (0~git20131104-1.1, automatic), libvorbis0a:i386 (1.3.2-1.3ubuntu1, automatic), libnih1:i386 (1.0.3-4ubuntu25, automatic), libxrender1:i386 (0.9.8-1build0.14.04.1, automatic), ocl-icd-libopencl1:amd64 (2.1.3-4, automatic), ocl-icd-libopencl1:i386 (2.1.3-4, automatic), p11-kit-modules:i386 (0.20.2-2ubuntu2, automatic), libdbus-1-3:i386 (1.6.18-0ubuntu4.3, automatic), gnome-exe-thumbnailer:amd64 (0.9.3-0ubuntu1, automatic), liblzma5:i386 (5.1.1alpha+20120614-2ubuntu2, automatic), samba-dsdb-modules: amd64 (4.1.6+dfsg-1ubuntu2.14.04.9, automatic), libgd3:i386 (2.1.0-3, automatic), libnss-winbind:amd64 (4.1.6+dfsg-1ubuntu2.14.04.9, automatic), libldap-2.4-2:i386 (2.4.31-1+nmu2ubuntu8.2, automatic), libgphoto2-port10:i386 (2.5.3.1-1ubuntu2.2, automatic), libsqlite3-0:i386 (3.8.2-1ubuntu2.1, automatic), fonts-unfonts-core:amd64 (1.0.3.is.1.0.2-080608-10ubuntu1, automatic), odbcinst1debian2:amd64 (2.2.14p2-5ubuntu5, automatic), libflac8:i386 (1.3.0-2ubuntu0.14.04.1, automatic), wine-mono0.0.8:amd64 (0.0.8-0ubuntu1, automatic), wine1.6-amd64:amd64 (1.6.2-0ubuntu4, automatic), libasound2-plugins:i386 (1.0.27-2ubuntu2, automatic), libsndfile1:i386 (1.0.25-7ubuntu2, automatic), libv4lconvert0:i386 (1.0.1-1, automatic), libxcb-glx0:i386 (1.10-2ubuntu1, automatic), libxml2:i386 (2.9.1+dfsg1-3ubuntu4.4, automatic), libudev1:i386 (204-5ubuntu20.14, automatic), libavahi-common-data:i386 (0.6.31-4ubuntu1, automatic), libasn1-8-heimdal:i386 (1.6~git20131207+dfsg-1ubuntu1.1, automatic), libxdmcp6:i386 (1.1.1-1, automati c), libv4l-0:i386 (1.0.1-1, automatic), libsane:i386 (1.0.23-3ubuntu3.1, automatic), libavahi-client3:i386 (0.6.31-4ubuntu1, automatic), wine-gecko2.21:amd64 (2.21-0ubuntu1, automatic), wine-gecko2.21:i386 (2.21-0ubuntu1, automatic), libxcb-sync1:i386 (1.10-2ubuntu1, automatic), libusb-1.0-0:i386 (1.0.17-1ubuntu2, automatic), libkdc2-heimdal:amd64 (1.6~git20131207+dfsg-1ubuntu1.1, automatic), liborc-0.4-0:i386 (0.4.18-1ubuntu1, automatic), wine1.6:amd64 (1.6.2-0ubuntu4, automatic), libp11-kit0:i386 (0.20.2-2ubuntu2, automatic), libasound2:i386 (1.0.27.2-3ubuntu7, automatic), libosmesa6:amd64 (10.1.3-0ubuntu0.5, automatic), libosmesa6:i386 (10.1.3-0ubuntu0.5, automatic), libdrm-nouveau2:i386 (2.4.60-2~ubuntu14.04.1, automatic), libheimbase1-heimdal:i386 (1.6~git20131207+dfsg-1ubuntu1.1, automatic), libogg0:i386 (1.3.1-1ubuntu1, automatic), fonts-horai-umefont:amd64 (460-1, automatic), libgphoto2-6:i386 (2.5.3.1-1ubuntu2.2, automatic), libgnutls26:i386 (2.12.23-12ubuntu2.2, automatic), libavahi-common3:i386 (0 .6.31-4ubuntu1, automatic), libodbc1:amd64 (2.2.14p2-5ubuntu5, automatic), libxslt1.1:i386 (1.1.28-2build1, automatic), libasyncns0:i386 (0.8-4ubuntu2, automatic), libmpg123-0:i386 (1.16.0-1ubuntu1, automatic), libp11-kit-gnome-keyring:i386 (3.10.1-1ubuntu4.2, automatic), odbcinst:amd64 (2.2.14p2-5ubuntu5, automatic), libgpg-error0:i386 (1.12-0.2ubuntu1, automatic), libxinerama1:i386 (1.1.3-1, automatic), libsasl2-modules:i386 (2.1.25.dfsg1-17build1, automatic), libpam-winbind:amd64 (4.1.6+dfsg-1ubuntu2.14.04.9, automatic), zlib1g:i386 (1.2.8.dfsg-1ubuntu1, automatic), libxcomposite1:i386 (0.4.4-1, automatic), binfmt-support:amd64 (2.1.4-1, automatic), libsasl2-2:i386 (2.1.25.dfsg1-17build1, automatic), libxdamage1:i386 (1.1.4-1ubuntu1, automatic), libxxf86vm1:i386 (1.1.3-1, automatic), libgstreamer-plugins-base0.10-0:i386 (0.10.36-1.1ubuntu2, automatic), libexpat1:i386 (2.1.0-4ubuntu1.1, automatic), libjbig0:i386 (2.0-2ubuntu4.1, automatic), libelf1:i386 (0.158-0ubuntu5.2, automatic), libxcb-dri3-0:i386 (1. 10-2ubuntu1, automatic), libgssapi3-heimdal:i386 (1.6~git20131207+dfsg-1ubuntu1.1, automatic), samba-vfs-modules:amd64 (4.1.6+dfsg-1ubuntu2.14.04.9, automatic), libxcb-present0:i386 (1.10-2ubuntu1, automatic), libpulse0:i386 (4.0-0ubuntu11.1, automatic), libtasn1-6:i386 (3.4-3ubuntu0.3, automatic), libwrap0:i386 (7.6.q-25, automatic), libhx509-5-heimdal:i386 (1.6~git20131207+dfsg-1ubuntu1.1, automatic), libstdc++6:i386 (4.8.4-2ubuntu1~14.04, automatic), attr:amd64 (2.4.47-1ubuntu1, automatic), libpcre3:i386 (8.31-2ubuntu2.1, automatic), libdrm2:i386 (2.4.60-2~ubuntu14.04.1, automatic), libgstreamer0.10-0:i386 (0.10.36-1.2ubuntu3, automatic), libkeyutils1:i386 (1.5.6-1, automatic), libx11-6:i386 (1.6.2-1ubuntu2, automatic), libxrandr2:i386 (1.4.2-1, automatic), libglu1-mesa:i386 (9.0.0-2, automatic), libvorbisenc2:i386 (1.3.2-1.3ubuntu1, automatic), libkrb5support0:i386 (1.12+dfsg-2ubuntu5.1, automatic), libk5crypto3:i386 (1.12+dfsg-2ubuntu5.1, automatic), libgcrypt11:i386 (1.5.3-2ubuntu4.2, automatic), libxp m4:i386 (3.5.10-1, automatic), libgpm2:i386 (1.20.4-6.1, automatic), gcc-4.9-base:i386 (4.9.1-0ubuntu1, automatic), libxshmfence1:i386 (1.1-2, automatic), libffi6:i386 (3.1~rc1+r3.0.13-12, automatic), libsamplerate0:i386 (0.1.8-7, automatic), libjpeg8:i386 (8c-2ubuntu8, automatic) End-Date: 2015-10-13 13:30:42 Start-Date: 2015-10-13 14:42:02 Commandline: apt-get install --reinstall python Reinstall: python:amd64 (2.7.5-5ubuntu3) End-Date: 2015-10-13 14:42:04 Start-Date: 2015-10-13 15:19:17 Commandline: apt-get install babel Install: gcj-jre-headless:amd64 (4.8.2-1ubuntu6, automatic), libxml-commons-resolver1.1-java:amd64 (1.2-7build1, automatic), babel-1.4.0:amd64 (1.4.0.dfsg-8.2), libgetopt-java:amd64 (1.0.14+dfsg-2, automatic), libxalan2-java:amd64 (2.7.1-9, automatic), gcj-jre:amd64 (4.8.2-1ubuntu6, automatic), gcj-4.8-jre:amd64 (4.8.4-2ubuntu1~14.04, automatic), libxerces2-java:amd64 (2.11.0-7, automatic), libxml-commons-external-java:amd64 (1.4.01-2build1, automatic), libgcj14-awt:amd64 (4.8.4-2ubuntu1~14.04, automatic), libgcj-common:amd64 (4.8.2-1ubuntu6, automatic), libjaxp1.3-java:amd64 (1.3.05-2ubuntu3, automatic), gcj-4.8-jre-lib:amd64 (4.8.4-2ubuntu1~14.04, automatic), gcj-4.8-jre-headless:amd64 (4.8.4-2ubuntu1~14.04, automatic), libgcj14:amd64 (4.8.4-2ubuntu1~14.04, automatic) End-Date: 2015-10-13 15:19:31 Start-Date: 2015-10-13 16:30:19 Commandline: apt-get install python-numpy python-scipy python-matplotlib Install: python-decorator:amd64 (3.4.0-2build1, automatic), python-scipy:amd64 (0.13.3-1build1) End-Date: 2015-10-13 16:30:23 Start-Date: 2015-10-13 17:26:16 Commandline: apt-get install python-numpy python-scipy python-matplotlib ipython ipython-notebook python-pandas python-sympy python-nose Install: fonts-lobster:amd64 (2.0-2, automatic), python-tables-lib:amd64 (3.1.1-0ubuntu1, automatic), ttf-adf-gillius:amd64 (0.20090423-2, automatic), dvipng:amd64 (1.14-2, automatic), fonts-comfortaa:amd64 (2.003-1, automatic), fonts-gfs-solomos:amd64 (1.1-5, automatic), libruby1.9.1:amd64 (1.9.3.484-2ubuntu1.2, automatic), luatex:amd64 (0.76.0-3ubuntu1, automatic), fonts-gfs-olga:amd64 (1.1-5, automatic), python-bs4:amd64 (4.2.1-1ubuntu2, automatic), fonts-cabin:amd64 (1.5-2, automatic), fonts-lato:amd64 (1.104-4, automatic), python-joblib:amd64 (0.7.1-1, automatic), libpgm-5.1-0:amd64 (5.1.118-1~dfsg-0.1ubuntu3, automatic), fonts-gfs-neohellenic:amd64 (1.1-6, automatic), python-tables-data:amd64 (3.1.1-0ubuntu1, automatic), python-simplegeneric:amd64 (0.8.1-1, automatic), python-nose:amd64 (1.3.1-2), ipython-notebook-common:amd64 (1.2.1-2, automatic), fonts-junicode:amd64 (0.7.8-2, automatic), python-pandas:amd64 (0.13.1-2ubuntu2), fonts-lobstertwo:amd64 (2.0-2, automatic), texlive-fonts-extra:amd64 (2013 .20140215-2, automatic), ttf-adf-accanthis:amd64 (0.20090423-2, automatic), python-statsmodels-lib:amd64 (0.5.0+git13-g8e07d34-1ubuntu2, automatic), python-openpyxl:amd64 (1.7.0+ds1-1, automatic), fonts-linuxlibertine:amd64 (5.3.0-2, automatic), libsnappy1:amd64 (1.1.0-1ubuntu1, automatic), python-zmq:amd64 (14.0.1-1build2, automatic), fonts-gfs-complutum:amd64 (1.1-6, automatic), python-antlr:amd64 (2.7.7+dfsg-5, automatic), ruby:amd64 (1.9.3.4, automatic), fonts-stix:amd64 (1.1.0-1, automatic), fonts-lmodern:amd64 (2.004.4-3, automatic), libglpk36:amd64 (4.52.1-2build1, automatic), libjs-marked:amd64 (0.3.1+dfsg-1, automatic), libzmq3:amd64 (4.0.4+dfsg-2, automatic), python-pandas-lib:amd64 (0.13.1-2ubuntu2, automatic), fonts-sil-gentium:amd64 (1.02-13, automatic), fonts-inconsolata:amd64 (001.010-5, automatic), lmodern:amd64 (2.004.4-3, automatic), libdsdp-5.8gf:amd64 (5.8-9.1, automatic), texlive-base:amd64 (2013.20140215-1, automatic), libjs-jquery:amd64 (1.7.2+dfsg-2ubuntu1, automatic), python-numexpr: amd64 (2.2.2-4build1, automatic), libjs-jquery-ui:amd64 (1.10.1+dfsg-1, automatic), python-simplejson:amd64 (3.3.1-1ubuntu6, automatic), python-statsmodels:amd64 (0.5.0+git13-g8e07d34-1ubuntu2, automatic), libyaml-0-2:amd64 (0.1.4-3ubuntu3.1, automatic), python-patsy:amd64 (0.2.1-3, automatic), python-sympy:amd64 (0.7.4.1-1), python-pycurl:amd64 (7.19.3-0ubuntu3, automatic), libgsl0ldbl:amd64 (1.16+dfsg-1ubuntu1, automatic), fonts-freefont-otf:amd64 (20120503-4, automatic), texlive-binaries:amd64 (2013.20130729.30972-2build3, automatic), fonts-sil-gentium-basic:amd64 (1.1-7, automatic), python-xlrd:amd64 (0.9.2-1, automatic), texlive-luatex:amd64 (2013.20140215-1, automatic), fonts-mathjax:amd64 (2.3-1, automatic), fonts-oflb-asana-math:amd64 (000.907-6, automatic), texlive-fonts-extra-doc:amd64 (2013.20140215-2, automatic), liblz4-1:amd64 (0.0~r114-2ubuntu1, automatic), python-xlwt:amd64 (0.7.5+debian1-1, automatic), python-mysqldb:amd64 (1.2.3-2ubuntu1, automatic), libjs-highlight:amd64 (7.4+ds-1, automati c), python-markupsafe:amd64 (0.18-1build2, automatic), libjs-mathjax:amd64 (2.3-1, automatic), python-tables:amd64 (3.1.1-0ubuntu1, automatic), python-tornado:amd64 (3.1.1-1ubuntu2, automatic), ruby1.9.1:amd64 (1.9.3.484-2ubuntu1.2, automatic), tex-common:amd64 (4.04, automatic), fonts-font-awesome:amd64 (4.0.0~dfsg-1, automatic), javascript-common:amd64 (11, automatic), libptexenc1:amd64 (2013.20130729.30972-2build3, automatic), ipython-notebook:amd64 (1.2.1-2), fonts-gfs-didot:amd64 (1.1-6, automatic), python-jinja2:amd64 (2.7.2-2, automatic), ipython:amd64 (1.2.1-2), python-cvxopt:amd64 (1.1.4-1.2, automatic), fonts-gfs-artemisia:amd64 (1.1-5, automatic) End-Date: 2015-10-13 17:28:13 Start-Date: 2015-10-13 17:30:07 Commandline: apt-get install gnuplot Install: liblua5.1-0:amd64 (5.1.5-5ubuntu0.1, automatic), psutils:amd64 (1.17.dfsg-1, automatic), gnuplot-nox:amd64 (4.6.4-2, automatic), aglfn:amd64 (1.7-3, automatic), gnuplot:amd64 (4.6.4-2), groff:amd64 (1.22.2-5, automatic) End-Date: 2015-10-13 17:30:14 Start-Date: 2015-10-13 18:01:42 Commandline: apt-get install openjdk-7-jdk Install: libxt-dev:amd64 (1.1.4-1, automatic), openjdk-7-jdk:amd64 (7u79-2.5.6-0ubuntu1.14.04.1), libsm-dev:amd64 (1.2.1-2, automatic), libice-dev:amd64 (1.0.8-2, automatic) End-Date: 2015-10-13 18:01:49 Start-Date: 2015-10-13 18:24:24 Commandline: apt-get install mesa-utils Install: mesa-utils:amd64 (8.1.0-2) End-Date: 2015-10-13 18:24:26 Start-Date: 2015-10-13 19:21:09 Commandline: aptdaemon role='role-commit-packages' sender=':1.215' Install: plotdrop:amd64 (0.5.2-3ubuntu1) End-Date: 2015-10-13 19:21:13 Start-Date: 2015-10-13 20:27:17 Commandline: apt-get remove rstudio Remove: rstudio:amd64 (0.99.486) End-Date: 2015-10-13 20:27:40 Start-Date: 2015-10-14 21:53:07 Commandline: apt-get remove gnuplot gnuplot-nox Remove: plotdrop:amd64 (0.5.2-3ubuntu1), gnuplot-nox:amd64 (4.6.4-2), gnuplot:amd64 (4.6.4-2) End-Date: 2015-10-14 21:53:19 Start-Date: 2015-10-14 21:53:57 Commandline: apt-get autoremove Remove: liblua5.1-0:amd64 (5.1.5-5ubuntu0.1), aglfn:amd64 (1.7-3) End-Date: 2015-10-14 21:53:58 Start-Date: 2015-10-14 21:55:24 Commandline: apt-get install gnuplot-x11 Install: liblua5.1-0:amd64 (5.1.5-5ubuntu0.1, automatic), gnuplot-x11:amd64 (4.6.4-2), aglfn:amd64 (1.7-3, automatic) End-Date: 2015-10-14 21:55:28 Start-Date: 2015-10-14 21:57:12 Commandline: apt-get install libcairo2-dev libpango1.0-dev libwxgtk2.8-dev Install: libpixman-1-dev:amd64 (0.30.2-2ubuntu1, automatic), x11proto-render-dev:amd64 (0.11.1-2, automatic), libwxbase2.8-dev:amd64 (2.8.12.1+dfsg-2ubuntu2, automatic), libwxgtk2.8-dev:amd64 (2.8.12.1+dfsg-2ubuntu2), libpango1.0-dev:amd64 (1.36.3-1ubuntu1.1), libwxbase3.0-0:amd64 (3.0.0-2, automatic), libxcb-shm0-dev:amd64 (1.10-2ubuntu1, automatic), wx2.8-headers:amd64 (2.8.12.1+dfsg-2ubuntu2, automatic), libcairo2-dev:amd64 (1.13.0~20140204-0ubuntu1.1), wx-common:amd64 (3.0.0-2, automatic), libxft-dev:amd64 (2.3.1-2, automatic), libharfbuzz-gobject0:amd64 (0.9.27-1ubuntu1, automatic), libxrender-dev:amd64 (0.9.8-1build0.14.04.1, automatic), libharfbuzz-dev:amd64 (0.9.27-1ubuntu1, automatic), libfontconfig1-dev:amd64 (2.11.0-0ubuntu4.1, automatic), libcairo-script-interpreter2:amd64 (1.13.0~20140204-0ubuntu1.1, automatic) End-Date: 2015-10-14 21:57:27 Start-Date: 2015-10-15 15:40:32 Commandline: aptdaemon role='role-commit-packages' sender=':1.89' Upgrade: google-chrome-stable:amd64 (45.0.2454.101-1, 46.0.2490.71-1), libgdk-pixbuf2.0-common:amd64 (2.30.7-0ubuntu1.1, 2.30.7-0ubuntu1.2), libgudev-1.0-0:amd64 (204-5ubuntu20.14, 204-5ubuntu20.15), gir1.2-gdkpixbuf-2.0:amd64 (2.30.7-0ubuntu1.1, 2.30.7-0ubuntu1.2), flashplugin-installer:amd64 (11.2.202.521ubuntu0.14.04.1, 11.2.202.535ubuntu0.14.04.1), gir1.2-gudev-1.0:amd64 (204-5ubuntu20.14, 204-5ubuntu20.15), libgdk-pixbuf2.0-0:amd64 (2.30.7-0ubuntu1.1, 2.30.7-0ubuntu1.2) End-Date: 2015-10-15 15:47:00 Start-Date: 2015-10-17 11:52:38 Commandline: apt-get install libextutils-f77-perl Install: libextutils-f77-perl:amd64 (1.17-1) End-Date: 2015-10-17 11:52:47 Start-Date: 2015-10-17 11:54:32 Commandline: apt-get install fort77 Install: libf2c2:amd64 (20090411-2, automatic), fort77:amd64 (1.15-10), f2c:amd64 (20100827-1, automatic), libf2c2-dev:amd64 (20090411-2, automatic) End-Date: 2015-10-17 11:54:37 Start-Date: 2015-10-17 12:29:35 Commandline: aptdaemon role='role-commit-packages' sender=':1.100' Upgrade: libsystemd-login0:amd64 (204-5ubuntu20.14, 204-5ubuntu20.15), systemd-services:amd64 (204-5ubuntu20.14, 204-5ubuntu20.15), firefox-locale-en:amd64 (41.0.1+build2-0ubuntu0.14.04.1, 41.0.2+build2-0ubuntu0.14.04.1), firefox-locale-hi:amd64 (41.0.1+build2-0ubuntu0.14.04.1, 41.0.2+build2-0ubuntu0.14.04.1), firefox:amd64 (41.0.1+build2-0ubuntu0.14.04.1, 41.0.2+build2-0ubuntu0.14.04.1), libsystemd-daemon0:amd64 (204-5ubuntu20.14, 204-5ubuntu20.15), libpam-systemd:amd64 (204-5ubuntu20.14, 204-5ubuntu20.15), firefox-locale-or:amd64 (41.0.1+build2-0ubuntu0.14.04.1, 41.0.2+build2-0ubuntu0.14.04.1), flashplugin-installer:amd64 (11.2.202.535ubuntu0.14.04.1, 11.2.202.540ubuntu0.14.04.2), udev:amd64 (204-5ubuntu20.14, 204-5ubuntu20.15), libudev1:amd64 (204-5ubuntu20.14, 204-5ubuntu20.15), libudev1:i386 (204-5ubuntu20.14, 204-5ubuntu20.15), libsystemd-journal0:amd64 (204-5ubuntu20.14, 204-5ubuntu20.15), libpq5:amd64 (9.3.9-0ubuntu0.14.04, 9.3.10-0ubuntu0.14.04) End-Date: 2015-10-17 12:33:28 Start-Date: 2015-10-17 13:30:23 Commandline: apt-get install ncbi-blast+ Install: ncbi-blast+:amd64 (2.2.28-2) End-Date: 2015-10-17 13:30:25 Start-Date: 2015-10-17 13:36:57 Commandline: apt-get install libncbi6 ncbi-blast+-legacy ncbi-data ncbi-epcr ncbi-seg ncbi-tools-x11 Install: ncbi-seg:amd64 (0.0.20000620-1), ncbi-blast+-legacy:amd64 (2.2.28-2), ncbi-epcr:amd64 (2.3.12-1-1) End-Date: 2015-10-17 13:37:00 Start-Date: 2015-10-17 13:45:02 Commandline: apt-get install bioperl Install: libcache-cache-perl:amd64 (1.06-2, automatic), libdevel-lexalias-perl:amd64 (0.05-1build1, automatic), libdbd-sqlite3-perl:amd64 (1.40-3, automatic), libxml-filter-buffertext-perl:amd64 (1.01-5, automatic), libxml-simple-perl:amd64 (2.20-1, automatic), libparams-util-perl:amd64 (1.07-1build1, automatic), libpadwalker-perl:amd64 (1.98-1, automatic), libossp-uuid-perl:amd64 (1.6.2-1.3ubuntu1, automatic), libxml-twig-perl:amd64 (3.44-1, automatic), libheap-perl:amd64 (0.80-2, automatic), libmime-tools-perl:amd64 (5.505-1, automatic), libgd-gd2-perl:amd64 (2.46-3.1build1, automatic), hmmer:amd64 (3.1b1-3, automatic), libarray-compare-perl:amd64 (2.02-1, automatic), libdevel-symdump-perl:amd64 (2.11-2, automatic), libbsd-resource-perl:amd64 (1.2907-1build1, automatic), libmodule-runtime-perl:amd64 (0.013-1, automatic), libcarp-clan-perl:amd64 (6.04-1, automatic), libole-storage-lite-perl:amd64 (0.19-1, automatic), libapache-dbi-perl:amd64 (1.12-1, automatic), libclass-load-perl:amd64 (0.20-1, automatic), libsort-naturally-perl:amd64 (1.02-1, automatic), libdevel-partialdump-perl:amd64 (0.17-1, automatic), libio-stringy-perl:amd64 (2.110-5, automatic), bioperl-run:amd64 (1.6.9-2, automatic), libsvg-graph-perl:amd64 (0.02-2, automatic), libxml-namespacesupport-perl:amd64 (1.11-1, automatic), libmodule-implementation-perl:amd64 (0.07-1, automatic), libfile-slurp-perl:amd64 (9999.19-4, automatic), libxml-sax-writer-perl:amd64 (0.53-1, automatic), libtry-tiny-perl:amd64 (0.19-1, automatic), libdata-stag-perl:amd64 (0.13-1, automatic), libdevel-globaldestruction-perl:amd64 (0.12-1, automatic), libdbd-pg-perl:amd64 (2.19.3-2, automatic), libxml-sax-base-perl:amd64 (1.07-1, automatic), libpostscript-perl:amd64 (0.06-2, automatic), libmldbm-perl:amd64 (2.05-1, automatic), perl-doc:amd64 (5.18.2-2ubuntu1, automatic), libace-perl:amd64 (1.92-3, automatic), libclass-c3-xs-perl:amd64 (0.13-1build4, automatic), libossp-uuid16:amd64 (1.6.2-1.3ubuntu1, automatic), tigr-glimmer:amd64 (3.02-3, automatic), bedtools:amd64 (2.1 7.0-1, automatic), perl-tk:amd64 (804.031-1build1, automatic), libb-hooks-endofscope-perl:amd64 (0.13-1, automatic), bioperl:amd64 (1.6.923-1), libsoap-lite-perl:amd64 (1.09-1, automatic), libsvg-perl:amd64 (2.59-1, automatic), libpathplan4:amd64 (2.36.0-0ubuntu3.1, automatic), libxml-regexp-perl:amd64 (0.04-1, automatic), libaprutil1-dbd-sqlite3:amd64 (1.5.3-1, automatic), muscle:amd64 (3.8.31-1, automatic), libsub-install-perl:amd64 (0.927-1, automatic), libstatistics-descriptive-perl:amd64 (3.0605-1, automatic), libcrypt-ssleay-perl:amd64 (0.58-1build1, automatic), maq:amd64 (0.7.1-5, automatic), libalgorithm-c3-perl:amd64 (0.08-1, automatic), libfreezethaw-perl:amd64 (0.5001-1, automatic), libapache2-mod-perl2:amd64 (2.0.8+httpd24-r1449661-6ubuntu2, automatic), libset-scalar-perl:amd64 (1.27-1, automatic), wise-data:amd64 (2.4.1-14, automatic), libxmlrpc-lite-perl:amd64 (0.717-1, automatic), libclass-c3-perl:amd64 (0.25-1, automatic), libapache2-reload-perl:amd64 (0.12-2, automatic), libxml-dom-perl:amd6 4 (1.44-1, automatic), t-coffee:amd64 (10.00.r1613-1, automatic), libtask-weaken-perl:amd64 (1.04-1, automatic), wise:amd64 (2.4.1-14, automatic), libconvert-binhex-perl:amd64 (1.123-1, automatic), libdate-manip-perl:amd64 (6.42-1, automatic), libxml-libxml-perl:amd64 (2.0108+dfsg-1ubuntu0.1, automatic), libalgorithm-munkres-perl:amd64 (0.08-2, automatic), libxml-sax-expat-perl:amd64 (0.40-2, automatic), bowtie:amd64 (1.0.0-5, automatic), libjcode-pm-perl:amd64 (2.06-1, automatic), libspreadsheet-writeexcel-perl:amd64 (2.40-1, automatic), libdate-calc-perl:amd64 (6.3-1, automatic), lynx:amd64 (2.8.8pre4-1, automatic), lynx-cur:amd64 (2.8.8pre4-1, automatic), libcgraph6:amd64 (2.36.0-0ubuntu3.1, automatic), libaprutil1-ldap:amd64 (1.5.3-1, automatic), libgvc6:amd64 (2.36.0-0ubuntu3.1, automatic), libbio-perl-perl:amd64 (1.6.923-1, automatic), libclass-inspector-perl:amd64 (1.28-1, automatic), libnamespace-clean-perl:amd64 (0.24-1, automatic), libmoose-perl:amd64 (2.1005-1, automatic), libsub-exporter-perl:amd 64 (0.986-1, automatic), libyaml-libyaml-perl:amd64 (0.41-5ubuntu0.14.04.1, automatic), libunicode-map-perl:amd64 (0.112-11, automatic), libbit-vector-perl:amd64 (7.3-1build1, automatic), libxml-dom-xpath-perl:amd64 (0.14-1, automatic), libfcgi-perl:amd64 (0.74-1build2, automatic), probcons:amd64 (1.12-9, automatic), graphviz:amd64 (2.36.0-0ubuntu3.1, automatic), libpackage-stash-perl:amd64 (0.36-1, automatic), kalign:amd64 (2.03+20110620-2, automatic), libconvert-binary-c-perl:amd64 (0.76-3build1, automatic), libxml-xpath-perl:amd64 (1.13-7, automatic), libdate-calc-xs-perl:amd64 (6.3-1build1, automatic), probalign:amd64 (1.4-3, automatic), libxml-libxslt-perl:amd64 (1.84-1, automatic), libxml-xpathengine-perl:amd64 (0.13-1, automatic), libbio-perl-run-perl:amd64 (1.6.9-2, automatic), libdata-optlist-perl:amd64 (0.109-1, automatic), libclass-tiny-perl:amd64 (0.012-1, automatic), libipc-sharelite-perl:amd64 (0.17-3build1, automatic), amap-align:amd64 (2.2-4, automatic), libvariable-magic-perl:amd64 (0.53-1, automatic), libtree-dagnode-perl:amd64 (1.17-1, automatic), mafft:amd64 (7.123-1, automatic), libspreadsheet-parseexcel-perl:amd64 (0.5800-1, automatic), libtie-ixhash-perl:amd64 (1.23-1, automatic), libbio-asn1-entrezgene-perl:amd64 (1.700-1, automatic), libxml-writer-perl:amd64 (0.623-1, automatic), sim4:amd64 (0.0.20121010-1, automatic), libgvpr2:amd64 (2.36.0-0ubuntu3.1, automatic), libio-sessiondata-perl:amd64 (1.03-1, automatic), libgraph-perl:amd64 (0.96-1.1, automatic), libyaml-perl:amd64 (0.84-1, automatic), phyml:amd64 (20120412-2, automatic), libeval-closure-perl:amd64 (0.11-1, automatic), exonerate:amd64 (2.2.0-6, automatic), libmath-derivative-perl:amd64 (0.01-6, automatic), libpackage-deprecationmanager-perl:amd64 (0.13-1, automatic), samtools:amd64 (0.1.19-1, automatic), tm-align:amd64 (20130511+dfsg-1, automatic), clustalw:amd64 (2.1+lgpl-4, automatic), libparse-recdescent-perl:amd64 (1.967009+dfsg-1, automatic), apache2-bin:amd64 (2.4.7-1ubuntu4.7, automatic), libxml-perl:amd64 (0.08-2, auto matic), libparams-classify-perl:amd64 (0.013-4build2, automatic), libclass-load-xs-perl:amd64 (0.06-1build1, automatic), libdevel-caller-perl:amd64 (2.06-1build1, automatic), libxml-sax-perl:amd64 (0.99+dfsg-2ubuntu1, automatic), libmath-spline-perl:amd64 (0.02-1, automatic), libdbd-mysql-perl:amd64 (4.025-1, automatic), libhtml-tableextract-perl:amd64 (2.11-1, automatic), libgraphviz-perl:amd64 (2.14-1, automatic), libcdt5:amd64 (2.36.0-0ubuntu3.1, automatic), bwa:amd64 (0.7.5a-2, automatic), blast2:amd64 (2.2.26.20120620-7, automatic), libdbi-perl:amd64 (1.630-1, automatic), libmro-compat-perl:amd64 (0.12-1, automatic), libpackage-stash-xs-perl:amd64 (0.28-1, automatic), libsub-exporter-progressive-perl:amd64 (0.001011-1, automatic), infernal:amd64 (1.1~rc4-2, automatic) End-Date: 2015-10-17 13:46:46 Start-Date: 2015-10-17 14:16:08 Commandline: apt-get install cd-hit Install: cd-hit:amd64 (4.6.1-2012-08-27-2) End-Date: 2015-10-17 14:16:10 Start-Date: 2015-10-17 14:24:50 Commandline: apt-get install python-pygraphviz Install: python-pygraphviz:amd64 (1.2-1) End-Date: 2015-10-17 14:24:52 Start-Date: 2015-10-17 15:36:48 Commandline: apt-get install genometools Install: lua-lpeg:amd64 (0.12-1, automatic), lua-filesystem:amd64 (1.6.2-1, automatic), libpth20:amd64 (2.0.7-19ubuntu1, automatic), lua-md5:amd64 (1.2+git+1+8d87fee-1, automatic), genometools:amd64 (1.5.1-2ubuntu1), genometools-common:amd64 (1.5.1-2ubuntu1, automatic) End-Date: 2015-10-17 15:36:54 Start-Date: 2015-10-17 16:11:51 Commandline: apt-get install sra-toolkit Install: sra-toolkit:amd64 (2.1.7a-1ubuntu2), sra-toolkit-libs0:amd64 (2.1.7a-1ubuntu2, automatic) End-Date: 2015-10-17 16:11:58 Start-Date: 2015-10-17 16:24:24 Commandline: apt-get install trinity Install: trinity:amd64 (1.3-1) End-Date: 2015-10-17 16:24:25 Start-Date: 2015-10-17 17:09:07 Commandline: apt-get install seqtk Install: seqtk:amd64 (1.0-1) End-Date: 2015-10-17 17:09:10 Start-Date: 2015-10-19 11:27:05 Commandline: apt-get install lua5.2 Install: lua5.2:amd64 (5.2.3-1) End-Date: 2015-10-19 11:27:14 Start-Date: 2015-10-19 11:30:08 Commandline: apt-get install lua5.2 lua5.2-doc lua5.2-dev uwsgi-plugin-lua5.2 liblua5.2-rrd0 liblua5.2-0 Install: libdbi1:amd64 (0.9.0-1, automatic), libltdl-dev:amd64 (2.4.2-1.7ubuntu1, automatic), fonts-dejavu:amd64 (2.34-1ubuntu1, automatic), librrd4:amd64 (1.4.7-2ubuntu5, automatic), libjansson4:amd64 (2.5-2, automatic), uwsgi-plugin-lua5.2:amd64 (1.9.17.1-5build5), liblua5.2-rrd0:amd64 (1.4.7-2ubuntu5), ttf-dejavu-extra:amd64 (2.34-1ubuntu1, automatic), liblua5.2-dev:amd64 (5.2.3-1), ttf-dejavu:amd64 (2.34-1ubuntu1, automatic), ttf-dejavu-core:amd64 (2.34-1ubuntu1, automatic), libtool:amd64 (2.4.2-1.7ubuntu1, automatic), uwsgi-core:amd64 (1.9.17.1-5build5, automatic), lua5.2-doc:amd64 (5.2.3-1) End-Date: 2015-10-19 11:30:22 Start-Date: 2015-10-19 13:53:09 Commandline: apt-get install --reinstall libxtst* Install: libxtst6-dbg:amd64 (1.2.2-1), x11proto-record-dev:amd64 (1.14.2-1, automatic), libxi-dev:amd64 (1.7.1.901-1ubuntu1.1, automatic), libxtst-dev:amd64 (1.2.2-1), libxtst-doc:amd64 (1.2.2-1) Reinstall: libxtst6:amd64 (1.2.2-1) End-Date: 2015-10-19 13:53:16 Start-Date: 2015-10-19 13:55:18 Commandline: apt-get install libxtst6:i386 Install: libxtst6:i386 (1.2.2-1) End-Date: 2015-10-19 13:55:19 Start-Date: 2015-10-19 14:40:09 Commandline: apt-get install python-biom-format r-bioc-biomart Install: r-cran-xml:amd64 (3.98-1.1-1, automatic), python-biom-format:amd64 (1.1.2-1), r-bioc-biomart:amd64 (2.18.0-1), r-cran-rcurl:amd64 (1.95-4.1-1, automatic), r-cran-bitops:amd64 (1.0-6-1, automatic), r-bioc-biobase:amd64 (2.20.0-1build1, automatic), libcurl3-nss:amd64 (7.35.0-1ubuntu2.5, automatic), python-cogent:amd64 (1.5.3-2, automatic), r-bioc-biocgenerics:amd64 (0.8.0-1, automatic) End-Date: 2015-10-19 14:40:18 Start-Date: 2015-10-19 15:14:46 Commandline: apt-get install ant Install: ant:amd64 (1.9.3-2build1), ant-optional:amd64 (1.9.3-2build1, automatic) End-Date: 2015-10-19 15:14:49 Start-Date: 2015-10-19 15:17:06 Commandline: apt-get --force-yes -y install python-dev libncurses5-dev libssl-dev libzmq-dev libgsl0-dev openjdk-6-jdk libxml2 libxslt1.1 libxslt1-dev ant git subversion build-essential zlib1g-dev libpng12-dev libfreetype6-dev mpich2 libreadline-dev gfortran unzip libmysqlclient18 libmysqlclient-dev ghc sqlite3 libsqlite3-dev libc6-i386 libbz2-dev tcl-dev tk-dev r-base r-base-dev libatlas-dev libatlas-base-dev liblapack-dev swig libhdf5-serial-dev Install: libgsl0-dev:amd64 (1.16+dfsg-1ubuntu1), libsqlite3-dev:amd64 (3.8.2-1ubuntu2.1), libatlas-base-dev:amd64 (3.10.1-4), libhdf5-serial-dev:amd64 (1.8.11-5ubuntu7), x11proto-scrnsaver-dev:amd64 (1.2.2-1, automatic), openjdk-6-jre-lib:amd64 (6b36-1.13.8-0ubuntu1~14.04, automatic), tcl-dev:amd64 (8.6.0+6ubuntu3), libatlas-dev:amd64 (3.10.1-4), icedtea-netx-common:amd64 (1.5-1ubuntu1, automatic), libxslt1-dev:amd64 (1.1.28-2build1), openjdk-6-jdk:amd64 (6b36-1.13.8-0ubuntu1~14.04), icedtea-6-jre-cacao:amd64 (6b36-1.13.8-0ubuntu1~14.04, automatic), libxss-dev:amd64 (1.2.2-1, automatic), mpich:amd64 (3.0.4-6ubuntu1, automatic), openjdk-6-jre-headless:amd64 (6b36-1.13.8-0ubuntu1~14.04, automatic), libzmq1:amd64 (2.2.0+dfsg-5, automatic), sqlite3:amd64 (3.8.2-1ubuntu2.1), hwloc-nox:amd64 (1.8-1ubuntu1.14.04.1, automatic), openjdk-6-jre:amd64 (6b36-1.13.8-0ubuntu1~14.04, automatic), libmpich10:amd64 (3.0.4-6ubuntu1, automatic), mpich2:amd64 (3.0.4-6ubuntu1), swig2.0:amd64 (2.0.11-1ubuntu2, automatic), icedtea-n etx:amd64 (1.5-1ubuntu1, automatic), libmpich-dev:amd64 (3.0.4-6ubuntu1, automatic), libmysqlclient-dev:amd64 (5.5.44-0ubuntu0.14.04.1), libhwloc5:amd64 (1.8-1ubuntu1.14.04.1, automatic), libzmq-dev:amd64 (2.2.0+dfsg-5), libc6-i386:amd64 (2.19-0ubuntu6.6), libhwloc-plugins:amd64 (1.8-1ubuntu1.14.04.1, automatic), tk8.6-dev:amd64 (8.6.1-3ubuntu2, automatic), tcl8.6-dev:amd64 (8.6.1-4ubuntu1, automatic), icedtea-6-jre-jamvm:amd64 (6b36-1.13.8-0ubuntu1~14.04, automatic), tk-dev:amd64 (8.6.0+6ubuntu3), swig:amd64 (2.0.11-1ubuntu2) End-Date: 2015-10-19 15:17:43 Start-Date: 2015-10-19 17:51:17 Commandline: apt-get install pandaseq Install: pandaseq:amd64 (2.9~ppa0), libpandaseq7:amd64 (2.9~ppa0, automatic) End-Date: 2015-10-19 17:51:28 Start-Date: 2015-10-20 11:16:15 Commandline: apt-get install libgtextutils0 libgtextutils-dev Install: libgtextutils-dev:amd64 (0.7-1), libgtextutils0:amd64 (0.7-1) End-Date: 2015-10-20 11:16:22 Start-Date: 2015-10-20 12:50:49 Commandline: apt-get install python-mpi* Install: python-mpmath-doc:amd64 (0.18-1), python-openid:amd64 (2.2.5-3ubuntu1, automatic), pyro:amd64 (3.14-1.1, automatic), python-mpmath:amd64 (0.18-1), python-formencode:amd64 (1.2.6-1ubuntu1, automatic), libbinio1ldbl:amd64 (1.4+dfsg1-3ubuntu1, automatic), openmpi-common:amd64 (1.6.5-8, automatic), python-mpltoolkits.basemap-data:amd64 (1.0.7+dfsg-1), libnetcdfc7:amd64 (4.1.3-7ubuntu2, automatic), mpi-default-bin:amd64 (1.0.2ubuntu1, automatic), python-pastescript:amd64 (1.7.5-3build1, automatic), openmpi-bin:amd64 (1.6.5-8, automatic), python-tempita:amd64 (0.5.2-1build1, automatic), libslp1:amd64 (1.2.1-9ubuntu0.2, automatic), libao-common:amd64 (1.1.0-2ubuntu2, automatic), python-mpdclient:amd64 (0.11.1-3), python-dap:amd64 (2.2.6.7-2, automatic), libmpikmeans1:amd64 (1.5-1build3, automatic), libroar2:amd64 (1.0~beta11-1, automatic), python-mpi4py:amd64 (1.3.1+hg20131106-1build3), python-mpltoolkits.basemap-doc:amd64 (1.0.7+dfsg-1), libibverbs1:amd64 (1.1.7-1ubuntu1.1, automatic), python-mpltoolkits. basemap:amd64 (1.0.7+dfsg-1), libadplug-2.2.1-0:amd64 (2.2.1+dfsg3-0.1ubuntu1, automatic), libid3tag0:amd64 (0.15.1b-10ubuntu1, automatic), python-mpi4py-dbg:amd64 (1.3.1+hg20131106-1build3), libdnet:amd64 (2.62, automatic), libgeos-3.4.2:amd64 (3.4.2-4ubuntu1, automatic), python-mpikmeans:amd64 (1.5-1build3), mpd:amd64 (0.18.7-1, automatic), python-netcdf:amd64 (2.9.4-1, automatic), python-pastedeploy:amd64 (1.5.2-1, automatic), libtorque2:amd64 (2.4.16+dfsg-1.3ubuntu1, automatic), python-cheetah:amd64 (2.4.4-3.fakesyncbuild1, automatic), python-dns:amd64 (2.3.6-3, automatic), libgeos-c1:amd64 (3.4.2-4ubuntu1, automatic), python-paste:amd64 (1.7.5.1-6ubuntu3, automatic), libopenmpi1.6:amd64 (1.6.5-8, automatic), python-scgi:amd64 (1.13-1.1build1, automatic), libjs-underscore:amd64 (1.4.4-2ubuntu1, automatic), libaudiofile1:amd64 (0.3.6-2, automatic), libjs-sphinxdoc:amd64 (1.2.2+dfsg-1ubuntu1.1, automatic), python-pastedeploy-tpl:amd64 (1.5.2-1, automatic), libzzip-0-13:amd64 (0.13.62-2, automatic), python- mpi4py-doc:amd64 (1.3.1+hg20131106-1build3), libao4:amd64 (1.1.0-2ubuntu2, automatic), libmpdclient2:amd64 (2.9-1ubuntu1, automatic), libsidutils0:amd64 (2.1.1-14, automatic), python-scientific:amd64 (2.9.4-1, automatic), python-mpd:amd64 (0.3.0-4), python-mpi:amd64 (2.9.4-1) End-Date: 2015-10-20 12:51:44 Start-Date: 2015-10-20 13:08:49 Commandline: apt-get install qt5-default qt5-qmake Install: libqt5concurrent5:amd64 (5.2.1+dfsg-1ubuntu14.3, automatic), qt5-qmake:amd64 (5.2.1+dfsg-1ubuntu14.3), qt5-default:amd64 (5.2.1+dfsg-1ubuntu14.3), libegl1-mesa-dev:amd64 (10.1.3-0ubuntu0.5, automatic), qtbase5-dev-tools:amd64 (5.2.1+dfsg-1ubuntu14.3, automatic), mircommon-dev:amd64 (0.1.8+14.04.20140411-0ubuntu1, automatic), libwayland-dev:amd64 (1.4.0-1ubuntu1, automatic), libprotobuf-dev:amd64 (2.5.0-9ubuntu1, automatic), libmirclient7:amd64 (0.1.8+14.04.20140411-0ubuntu1, automatic), libmirprotobuf-dev:amd64 (0.1.8+14.04.20140411-0ubuntu1, automatic), libmirclientplatform-mesa:amd64 (0.1.8+14.04.20140411-0ubuntu1, automatic), libmirprotobuf0:amd64 (0.1.8+14.04.20140411-0ubuntu1, automatic), libqt5opengl5-dev:amd64 (5.2.1+dfsg-1ubuntu14.3, automatic), libmirclient-dev:amd64 (0.1.8+14.04.20140411-0ubuntu1, automatic), libgles2-mesa-dev:amd64 (10.1.3-0ubuntu0.5, automatic), libprotobuf-lite8:amd64 (2.5.0-9ubuntu1, automatic), qtbase5-dev:amd64 (5.2.1+dfsg-1ubuntu14.3, automatic) End-Date: 2015-10-20 13:09:08 Start-Date: 2015-10-20 14:08:17 Commandline: apt-get install libqt4-* Install: libqtwebkit4-dbg:amd64 (2.3.2-0ubuntu7, automatic), libqt4-sql-mysql:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1), libsmokeqtxml4-3:amd64 (4.13.0-0ubuntu1, automatic), libsmokeqtuitools4-3:amd64 (4.13.0-0ubuntu1, automatic), ruby-qt4-script:amd64 (4.13.0-0ubuntu1, automatic), libqt4-xmlpatterns-dbg:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1), libsmokeqtwebkit4-3:amd64 (4.13.0-0ubuntu1, automatic), freetds-common:amd64 (0.91-5, automatic), libqt4-qt3support:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1), libqt4-qt3support-dbg:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1), libqt4-private-dev:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1), libqt4-declarative-folderlistmodel:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1), phonon:amd64 (4.7.80-0ubuntu1~ubuntu14.04, automatic), libsmokeqtsql4-3:amd64 (4.13.0-0ubuntu1, automatic), libqtruby4shared2:amd64 (4.13.0-0ubuntu1, automatic), libqt4-designer-dbg:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1), libqt4-declarative-shaders:amd64 (4.8.5+git192-g085f851+d fsg-2ubuntu4.1), libsybdb5:amd64 (0.91-5, automatic), libsmokebase3:amd64 (4.13.0-0ubuntu1, automatic), libqt4-sql-odbc:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1), ruby-qt4-webkit:amd64 (4.13.0-0ubuntu1, automatic), libsmokeqtgui4-3:amd64 (4.13.0-0ubuntu1, automatic), libqt4-opengl-dev:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1), libqt4-ruby:amd64 (4.13.0-0ubuntu1), ruby-phonon:amd64 (4.13.0-0ubuntu1, automatic), libqt4-dev-bin:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1), qt4-linguist-tools:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1, automatic), libsmokeqtcore4-3:amd64 (4.13.0-0ubuntu1, automatic), ruby-qt4-uitools:amd64 (4.13.0-0ubuntu1, automatic), libqt4-gui:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1), libqt4-sql-tds:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1), ruby-qt4-test:amd64 (4.13.0-0ubuntu1, automatic), libqt4-sql-psql:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1), libqt4-script-dbg:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1), libqt4-webkit:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4. 1), libsmokeqtopengl4-3:amd64 (4.13.0-0ubuntu1, automatic), libqt4-ruby1.8:amd64 (4.13.0-0ubuntu1), libqt4-declarative-gestures:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1), libsmokeqttest4-3:amd64 (4.13.0-0ubuntu1, automatic), libsmokeqtscript4-3:amd64 (4.13.0-0ubuntu1, automatic), libsmokeqtdbus4-3:amd64 (4.13.0-0ubuntu1, automatic), libsmokeqtsvg4-3:amd64 (4.13.0-0ubuntu1, automatic), libqt4-core:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1), libsmokeqtnetwork4-3:amd64 (4.13.0-0ubuntu1, automatic), libqtwebkit-dev:amd64 (2.3.2-0ubuntu7, automatic), libqt4-dbg:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1), libqt4pas5:amd64 (2.5-10ubuntu1), libqt4pas-dev:amd64 (2.5-10ubuntu1), libqt4-dev:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1), libqt4-declarative-particles:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1), qt4-qmake:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1, automatic), libqt4-webkit-dbg:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1), libsmokephonon3:amd64 (4.13.0-0ubuntu1, automatic), libqt4-assistant :amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1), ruby-qt4:amd64 (4.13.0-0ubuntu1, automatic) Error: Sub-process /usr/bin/dpkg returned an error code (1) End-Date: 2015-10-20 14:08:51 Start-Date: 2015-10-20 16:35:31 Commandline: apt-get install libqt4-* Install: libqt4-designer-dbg:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1), libqt4-dev-bin:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1), libqt4-dbg:amd64 (4.8.5+git192-g085f851+dfsg-2ubuntu4.1) Error: Sub-process /usr/bin/dpkg returned an error code (1) End-Date: 2015-10-20 16:35:35 Start-Date: 2015-10-20 16:53:44 Commandline: apt-get install --reinstall rstudio End-Date: 2015-10-20 16:53:54 Start-Date: 2015-10-21 15:02:45 Commandline: apt-get install libcurl4-openssl-dev Install: libidn11-dev:amd64 (1.28-1ubuntu2, automatic), libgpg-error-dev:amd64 (1.12-0.2ubuntu1, automatic), krb5-multidev:amd64 (1.12+dfsg-2ubuntu5.1, automatic), libldap2-dev:amd64 (2.4.31-1+nmu2ubuntu8.2, automatic), libp11-kit-dev:amd64 (0.20.2-2ubuntu2, automatic), librtmp-dev:amd64 (2.4+20121230.gitdf6c518-1, automatic), libkadm5clnt-mit9:amd64 (1.12+dfsg-2ubuntu5.1, automatic), libkrb5-dev:amd64 (1.12+dfsg-2ubuntu5.1, automatic), libgnutls-dev:amd64 (2.12.23-12ubuntu2.2, automatic), libgcrypt11-dev:amd64 (1.5.3-2ubuntu4.2, automatic), libcurl4-openssl-dev:amd64 (7.35.0-1ubuntu2.5), libkdb5-7:amd64 (1.12+dfsg-2ubuntu5.1, automatic), libgnutlsxx27:amd64 (2.12.23-12ubuntu2.2, automatic), libgssrpc4:amd64 (1.12+dfsg-2ubuntu5.1, automatic), libkadm5srv-mit9:amd64 (1.12+dfsg-2ubuntu5.1, automatic), comerr-dev:amd64 (2.1-1.42.9-3ubuntu1.3, automatic), libtasn1-6-dev:amd64 (3.4-3ubuntu0.3, automatic) End-Date: 2015-10-21 15:03:42 Start-Date: 2015-10-21 16:44:54 Commandline: apt-get install python-h5py hdf5-tools hdf5-helpers Install: python-h5py:amd64 (2.2.1-1build2), hdf5-tools:amd64 (1.8.11-5ubuntu7) End-Date: 2015-10-21 16:45:04 Start-Date: 2015-10-21 20:29:13 Commandline: apt-get install freetype* python-pip python-dev python-numpy python-scipy python-matplotlib Install: libjna-java:amd64 (3.2.7-4, automatic), libtaoframework-freetype-cil-dev:amd64 (2.1.svn20090801-9ubuntu1), libtaoframework-freetype2.3-cil:amd64 (2.1.svn20090801-9ubuntu1), mono-gac:amd64 (3.2.8+dfsg-4ubuntu1.1, automatic), libisrt-java:amd64 (4.8.20100629-2, automatic), mono-runtime-common:amd64 (3.2.8+dfsg-4ubuntu1.1, automatic), freetype2-demos:amd64 (2.5.2-1ubuntu2.5), libmono-i18n-west4.0-cil:amd64 (3.2.8+dfsg-4ubuntu1.1, automatic), mono-runtime-sgen:amd64 (3.2.8+dfsg-4ubuntu1.1, automatic), libmono-security4.0-cil:amd64 (3.2.8+dfsg-4ubuntu1.1, automatic), libisfreetype-java-doc:amd64 (5.3.20100629-3build1), libmono-corlib4.5-cil:amd64 (3.2.8+dfsg-4ubuntu1.1, automatic), mono-runtime:amd64 (3.2.8+dfsg-4ubuntu1.1, automatic), libmono-i18n4.0-cil:amd64 (3.2.8+dfsg-4ubuntu1.1, automatic), libmono-system-xml4.0-cil:amd64 (3.2.8+dfsg-4ubuntu1.1, automatic), libfont-freetype-perl:amd64 (0.03-1build4), mono-4.0-gac:amd64 (3.2.8+dfsg-4ubuntu1.1, automatic), libisfreetype-java:amd64 (5.3.20100629-3buil d1), libmono-system-security4.0-cil:amd64 (3.2.8+dfsg-4ubuntu1.1, automatic), cli-common:amd64 (0.9, automatic), libisnativec-java:amd64 (5.3.20100629+fix-1, automatic), libmono-system4.0-cil:amd64 (3.2.8+dfsg-4ubuntu1.1, automatic), libmono-system-configuration4.0-cil:amd64 (3.2.8+dfsg-4ubuntu1.1, automatic) End-Date: 2015-10-21 20:29:46 Start-Date: 2015-10-22 14:10:03 Commandline: apt-get install cryptkeeper Install: encfs:amd64 (1.7.4-2.4ubuntu2, automatic), cryptkeeper:amd64 (0.9.5-5.1ubuntu3), libboost-serialization1.54.0:amd64 (1.54.0-4ubuntu3.1, automatic), librlog5:amd64 (1.4-2ubuntu2, automatic) End-Date: 2015-10-22 14:10:15 Start-Date: 2015-10-22 14:14:06 Commandline: apt-get install libcrypt-des-perl Install: libcrypt-des-perl:amd64 (2.07-1) End-Date: 2015-10-22 14:14:10 Start-Date: 2015-10-22 14:16:53 Commandline: apt-get install mcrypt Install: mcrypt:amd64 (2.6.8-1.3), libmcrypt4:amd64 (2.5.8-3.1ubuntu1, automatic) End-Date: 2015-10-22 14:16:56 Start-Date: 2015-10-22 15:27:56 Commandline: apt-get install librg-utils-perl Install: profnet-prof:amd64 (1.0.22-1, automatic), librg-utils-perl:amd64 (1.0.43-2), profphd-net:amd64 (1.0.22-1, automatic), pp-popularity-contest:amd64 (1.0.6-1ubuntu1, automatic), profphd-utils:amd64 (1.0.10-1, automatic), libboost-program-options1.54.0:amd64 (1.54.0-4ubuntu3.1, automatic), profphd:amd64 (1.0.40-1, automatic) End-Date: 2015-10-22 15:28:03 Start-Date: 2015-10-23 17:06:08 Commandline: apt-get install -f Install: libauthen-pam-perl:amd64 (0.16-2build3, automatic), apt-show-versions:amd64 (0.22.3, automatic) End-Date: 2015-10-23 17:07:08 Start-Date: 2015-10-23 17:16:05 Commandline: apt-get -y install apache2-bin Upgrade: apache2-bin:amd64 (2.4.7-1ubuntu4.7, 2.4.7-1ubuntu4.8) End-Date: 2015-10-23 17:16:14 Start-Date: 2015-10-23 17:16:19 Commandline: apt-get -y install apport Upgrade: apport:amd64 (2.14.1-0ubuntu3.15, 2.14.1-0ubuntu3.16), python3-apport:amd64 (2.14.1-0ubuntu3.15, 2.14.1-0ubuntu3.16) End-Date: 2015-10-23 17:17:06 Start-Date: 2015-10-23 17:17:08 Commandline: apt-get -y install apport-gtk Upgrade: apport-gtk:amd64 (2.14.1-0ubuntu3.15, 2.14.1-0ubuntu3.16) End-Date: 2015-10-23 17:17:11 Start-Date: 2015-10-23 17:17:14 Commandline: apt-get -y install gir1.2-nmgtk-1.0 Upgrade: gir1.2-nmgtk-1.0:amd64 (0.9.8.8-0ubuntu4.3, 0.9.8.8-0ubuntu4.4) End-Date: 2015-10-23 17:17:15 Start-Date: 2015-10-23 17:19:58 Commandline: apt-get -y install google-chrome-stable Upgrade: google-chrome-stable:amd64 (46.0.2490.71-1, 46.0.2490.80-1) Error: Sub-process /usr/bin/dpkg exited unexpectedly End-Date: 2015-10-23 17:19:59 Start-Date: 2015-10-23 17:21:29 Commandline: apt-get -y install google-chrome-stable Upgrade: google-chrome-stable:amd64 (46.0.2490.71-1, 46.0.2490.80-1) End-Date: 2015-10-23 17:21:47 Start-Date: 2015-10-23 17:21:51 Commandline: apt-get -y install indicator-session Upgrade: indicator-session:amd64 (12.10.5+14.04.20150404-0ubuntu1, 12.10.5+14.04.20151008-0ubuntu1) End-Date: 2015-10-23 17:21:55 Start-Date: 2015-10-23 17:21:58 Commandline: apt-get -y install libminiupnpc8 Upgrade: libminiupnpc8:amd64 (1.6-3ubuntu2.14.04.1, 1.6-3ubuntu2.14.04.2) End-Date: 2015-10-23 17:22:00 Start-Date: 2015-10-23 17:22:07 Commandline: apt-get -y install libnm-gtk-common Upgrade: libnm-gtk0:amd64 (0.9.8.8-0ubuntu4.3, 0.9.8.8-0ubuntu4.4), network-manager-gnome:amd64 (0.9.8.8-0ubuntu4.3, 0.9.8.8-0ubuntu4.4), libnm-gtk-common:amd64 (0.9.8.8-0ubuntu4.3, 0.9.8.8-0ubuntu4.4) End-Date: 2015-10-23 17:22:15 Start-Date: 2015-10-23 17:27:01 Commandline: apt-get -y install liboxideqt-qmlplugin Install: oxideqt-codecs:amd64 (1.10.3-0ubuntu0.14.04.1, automatic) Upgrade: liboxideqtcore0:amd64 (1.9.5-0ubuntu0.14.04.1, 1.10.3-0ubuntu0.14.04.1), liboxideqtquick0:amd64 (1.9.5-0ubuntu0.14.04.1, 1.10.3-0ubuntu0.14.04.1), liboxideqt-qmlplugin:amd64 (1.9.5-0ubuntu0.14.04.1, 1.10.3-0ubuntu0.14.04.1) Remove: oxideqt-codecs-extra:amd64 (1.9.5-0ubuntu0.14.04.1) End-Date: 2015-10-23 17:27:10 Start-Date: 2015-10-23 17:27:49 Commandline: apt-get -y install libpython3.4 Upgrade: python3.4:amd64 (3.4.3-1ubuntu1~14.04.1, 3.4.3-1ubuntu1~14.04.3), python3.4-minimal:amd64 (3.4.3-1ubuntu1~14.04.1, 3.4.3-1ubuntu1~14.04.3), libpython3.4-stdlib:amd64 (3.4.3-1ubuntu1~14.04.1, 3.4.3-1ubuntu1~14.04.3), libpython3.4:amd64 (3.4.3-1ubuntu1~14.04.1, 3.4.3-1ubuntu1~14.04.3), libpython3.4-minimal:amd64 (3.4.3-1ubuntu1~14.04.1, 3.4.3-1ubuntu1~14.04.3), python3-urllib3:amd64 (1.7.1-1ubuntu3, 1.7.1-1ubuntu4) End-Date: 2015-10-23 17:28:01 Start-Date: 2015-10-23 17:28:14 Commandline: apt-get -y install linux-libc-dev Upgrade: linux-libc-dev:amd64 (3.13.0-65.106, 3.13.0-66.108) End-Date: 2015-10-23 17:28:18 Start-Date: 2015-10-23 17:28:26 Commandline: apt-get -y install oxideqt-codecs-extra Install: oxideqt-codecs-extra:amd64 (1.10.3-0ubuntu0.14.04.1) Remove: oxideqt-codecs:amd64 (1.10.3-0ubuntu0.14.04.1) End-Date: 2015-10-23 17:28:29 Start-Date: 2015-10-23 17:28:32 Commandline: apt-get -y install python-urllib3 Upgrade: python-urllib3:amd64 (1.7.1-1ubuntu3, 1.7.1-1ubuntu4) End-Date: 2015-10-23 17:28:34 Start-Date: 2015-10-23 17:28:37 Commandline: apt-get -y install python-urllib3-whl Upgrade: python-urllib3-whl:amd64 (1.7.1-1ubuntu3, 1.7.1-1ubuntu4) End-Date: 2015-10-23 17:28:39 Start-Date: 2015-10-23 17:28:50 Commandline: apt-get -y install python3-problem-report Upgrade: python3-problem-report:amd64 (2.14.1-0ubuntu3.15, 2.14.1-0ubuntu3.16) End-Date: 2015-10-23 17:28:52 Start-Date: 2015-10-23 17:28:57 Commandline: apt-get -y install tzdata Upgrade: tzdata-java:amd64 (2015f-0ubuntu0.14.04, 2015g-0ubuntu0.14.04), tzdata:amd64 (2015f-0ubuntu0.14.04, 2015g-0ubuntu0.14.04) End-Date: 2015-10-23 17:29:01 Start-Date: 2015-10-23 18:00:16 Commandline: apt-get -y --force-yes -f install mysql-client mysql-server Install: mysql-server-core-5.5:amd64 (5.5.44-0ubuntu0.14.04.1, automatic), mysql-server-5.5:amd64 (5.5.44-0ubuntu0.14.04.1, automatic), mysql-client-core-5.5:amd64 (5.5.44-0ubuntu0.14.04.1, automatic), mysql-client:amd64 (5.5.44-0ubuntu0.14.04.1), mysql-client-5.5:amd64 (5.5.44-0ubuntu0.14.04.1, automatic), libhtml-template-perl:amd64 (2.95-1, automatic), libterm-readkey-perl:amd64 (2.31-1, automatic), mysql-server:amd64 (5.5.44-0ubuntu0.14.04.1) Error: Sub-process /usr/bin/dpkg exited unexpectedly End-Date: 2015-10-23 18:00:16 Start-Date: 2015-10-23 20:02:05 Commandline: apt-get autoremove Remove: phonon:amd64 (4.7.80-0ubuntu1~ubuntu14.04) End-Date: 2015-10-23 20:02:06 Start-Date: 2015-10-23 20:02:28 Commandline: apt-get install --reinstall python-matplotlib Reinstall: python-matplotlib:amd64 (1.3.1-1ubuntu5) End-Date: 2015-10-23 20:02:32 Start-Date: 2015-10-23 20:20:37 Commandline: apt-get build-dep python-matplotlib Install: python3-tz:amd64 (2012c-1ubuntu0.1), libpython-all-dev:amd64 (2.7.5-5ubuntu3, automatic), libpython3-dbg:amd64 (3.4.0-0ubuntu2, automatic), preview-latex-style:amd64 (11.87-1ubuntu2, automatic), python-all-dbg:amd64 (2.7.5-5ubuntu3), python3-dateutil:amd64 (2.0+dfsg1-1), texlive-latex-extra:amd64 (2013.20140215-2), libpython3-dev:amd64 (3.4.0-0ubuntu2, automatic), libpython3.4-dbg:amd64 (3.4.3-1ubuntu1~14.04.3, automatic), libgtkmm-2.4-1c2a:amd64 (2.24.4-1ubuntu1, automatic), python-all-dev:amd64 (2.7.5-5ubuntu3), sphinx-common:amd64 (1.2.2+dfsg-1ubuntu1.1, automatic), python3-nose:amd64 (1.3.1-2), python3-numpy:amd64 (1.8.2-0ubuntu0.1), libpython3.4-dev:amd64 (3.4.3-1ubuntu1~14.04.3, automatic), x11proto-xinerama-dev:amd64 (1.2.1-2, automatic), libpython-dbg:amd64 (2.7.5-5ubuntu3, automatic), python-all:amd64 (2.7.5-5ubuntu3, automatic), python-tk-dbg:amd64 (2.7.5-1ubuntu1), libxcomposite-dev:amd64 (0.4.4-1, automatic), python-roman:amd64 (2.0.0-1, automatic), python3-pyqt4:amd64 (4.10.4+dfsg-1ubun tu1), python3.4-dbg:amd64 (3.4.3-1ubuntu1~14.04.3, automatic), python3-tornado:amd64 (3.1.1-1ubuntu2), texlive-latex-recommended:amd64 (2013.20140215-1, automatic), texlive-pictures:amd64 (2013.20140215-1, automatic), python3.4-dev:amd64 (3.4.3-1ubuntu1~14.04.3, automatic), docutils-common:amd64 (0.11-3, automatic), texlive-fonts-recommended:amd64 (2013.20140215-1), gir1.2-gtk-2.0:amd64 (2.24.23-0ubuntu1.3, automatic), python-dbg:amd64 (2.7.5-5ubuntu3, automatic), python-sphinx:amd64 (1.2.2+dfsg-1ubuntu1.1, automatic), libpython2.7-dbg:amd64 (2.7.6-8ubuntu0.2, automatic), libgtkspell0:amd64 (2.0.16-1ubuntu7, automatic), inkscape:amd64 (0.48.4-3ubuntu2), xvfb:amd64 (1.15.1-0ubuntu2.7), python-gtk2-dev:amd64 (2.24.0-3ubuntu3), python3-all:amd64 (3.4.0-0ubuntu2, automatic), python3-all-dbg:amd64 (3.4.0-0ubuntu2), python-gobject-2-dev:amd64 (2.28.6-12build1, automatic), python3-all-dev:amd64 (3.4.0-0ubuntu2), python-docutils:amd64 (0.11-3, automatic), python3-setuptools:amd64 (3.3-1ubuntu2), x11proto-randr-dev:a md64 (1.4.0+git20120101.is.really.1.4.0-0ubuntu1, automatic), python2.7-dbg:amd64 (2.7.6-8ubuntu0.2, automatic), libxrandr-dev:amd64 (1.4.2-1, automatic), texlive-latex-base:amd64 (2013.20140215-1, automatic), python-pygments:amd64 (1.6+dfsg-1ubuntu1, automatic), python3-dbg:amd64 (3.4.0-0ubuntu2, automatic), x11proto-composite-dev:amd64 (0.4.2-2, automatic), libmagick++5:amd64 (6.7.7.10-6ubuntu3, automatic), python3-dev:amd64 (3.4.0-0ubuntu2, automatic), libxinerama-dev:amd64 (1.1.3-1, automatic), python-numpy-dbg:amd64 (1.8.2-0ubuntu0.1), libgdk-pixbuf2.0-dev:amd64 (2.30.7-0ubuntu1.2, automatic), python3-sip:amd64 (4.15.5-1build1, automatic), libatk1.0-dev:amd64 (2.10.0-2ubuntu2, automatic), libpython3-all-dbg:amd64 (3.4.0-0ubuntu2, automatic), python3-numpy-dbg:amd64 (1.8.2-0ubuntu0.1), libpython-all-dbg:amd64 (2.7.5-5ubuntu3, automatic), python-numpydoc:amd64 (0.4-1), libgtk2.0-dev:amd64 (2.24.23-0ubuntu1.3), python3-tk-dbg:amd64 (3.4.3-1~14.04.2), libxcursor-dev:amd64 (1.1.14-1, automatic), libpython3-a ll-dev:amd64 (3.4.0-0ubuntu2, automatic), python3-tk:amd64 (3.4.3-1~14.04.2) Error: Sub-process /usr/bin/dpkg returned an error code (2) End-Date: 2015-10-23 20:20:39 Start-Date: 2015-10-24 13:25:23 Commandline: apt-get install --reinstall firefox Reinstall: firefox:amd64 (41.0.2+build2-0ubuntu0.14.04.1) End-Date: 2015-10-24 13:25:43 Start-Date: 2015-10-24 17:52:35 Commandline: apt-get autoremove Remove: libpython3.4-dev:amd64 (3.4.3-1ubuntu1~14.04.3) End-Date: 2015-10-24 17:52:45 Start-Date: 2015-10-24 17:54:17 Commandline: apt-get dist-upgrade Install: phonon:amd64 (4.7.80-0ubuntu1~ubuntu14.04, automatic) Upgrade: libsmokephonon3:amd64 (4.13.0-0ubuntu1, 4.13.0-0ubuntu1) End-Date: 2015-10-24 17:54:21 Start-Date: 2015-10-25 17:39:37 Commandline: apt-get install build-essential gcc-multilib rpm openjdk-7-jre-headless Install: gcc-4.8-multilib:amd64 (4.8.4-2ubuntu1~14.04, automatic), libc6-dev-x32:amd64 (2.19-0ubuntu6.6, automatic), lib32gcc1:amd64 (4.9.1-0ubuntu1, automatic), libx32gcc-4.8-dev:amd64 (4.8.4-2ubuntu1~14.04, automatic), libc6-dev-i386:amd64 (2.19-0ubuntu6.6, automatic), lib32gcc-4.8-dev:amd64 (4.8.4-2ubuntu1~14.04, automatic), libx32asan0:amd64 (4.8.4-2ubuntu1~14.04, automatic), libx32itm1:amd64 (4.8.4-2ubuntu1~14.04, automatic), gcc-multilib:amd64 (4.8.2-1ubuntu6), libx32gomp1:amd64 (4.8.4-2ubuntu1~14.04, automatic), libx32atomic1:amd64 (4.8.4-2ubuntu1~14.04, automatic), lib32asan0:amd64 (4.8.4-2ubuntu1~14.04, automatic), libx32quadmath0:amd64 (4.8.4-2ubuntu1~14.04, automatic), lib32gomp1:amd64 (4.8.4-2ubuntu1~14.04, automatic), lib32atomic1:amd64 (4.8.4-2ubuntu1~14.04, automatic), lib32itm1:amd64 (4.8.4-2ubuntu1~14.04, automatic), libx32gcc1:amd64 (4.9.1-0ubuntu1, automatic), lib32quadmath0:amd64 (4.8.4-2ubuntu1~14.04, automatic), libc6-x32:amd64 (2.19-0ubuntu6.6, automatic) End-Date: 2015-10-25 17:39:58 Start-Date: 2015-10-25 17:45:48 Commandline: apt-get install openmpi-bin openmpi-common gfortran csh grace menu x11proto-print-dev motif-clients freeglut3-dev libx11-dev libxmu-dev libxi-dev libgl1-mesa-glx libglu1-mesa libglu1-mesa-dev libgl1-mesa-dri libcurl-ocaml-dev libcurl4-gnutls-dev gnuplot Install: xserver-xorg-video-siliconmotion:amd64 (1.7.7-2build1, automatic), libegl1-mesa:amd64 (10.1.3-0ubuntu0.5, automatic), libopenvg1-mesa:amd64 (10.1.3-0ubuntu0.5, automatic), libxbae4m:amd64 (4.60.4-5ubuntu1, automatic), motif-clients:amd64 (2.3.4-5ubuntu0.1), ocaml-nox:amd64 (4.01.0-3ubuntu3, automatic), libegl1-mesa-drivers:amd64 (10.1.3-0ubuntu0.5, automatic), xserver-xorg-video-sisusb:amd64 (0.9.6-2build1, automatic), xserver-xorg-video-savage:amd64 (2.3.7-2ubuntu2, automatic), libxmu-dev:amd64 (1.1.1-1), xserver-xorg-video-glamoregl:amd64 (0.6.0-0ubuntu4, automatic), libllvm3.4:amd64 (3.4-1ubuntu3, automatic), libllvm3.4:i386 (3.4-1ubuntu3, automatic), libgl1-mesa-dri:amd64 (10.1.3-0ubuntu0.5), libgl1-mesa-dri:i386 (10.1.3-0ubuntu0.5, automatic), xserver-xorg-video-neomagic:amd64 (1.2.8-1build1, automatic), xfonts-100dpi:amd64 (1.0.3, automatic), xserver-xorg-input-evdev:amd64 (2.8.2-1ubuntu2, automatic), menu:amd64 (2.1.46ubuntu1), xserver-xorg-core:amd64 (1.15.1-0ubuntu2.7, automatic), libglapi- mesa:amd64 (10.1.3-0ubuntu0.5, automatic), libglapi-mesa:i386 (10.1.3-0ubuntu0.5, automatic), libcurl-ocaml-dev:amd64 (0.5.3-2build4), x11proto-print-dev:amd64 (1.0.5-2), xserver-xorg-video-vesa:amd64 (2.3.3-1build1, automatic), freeglut3-dev:amd64 (2.8.1-1), xserver-xorg-video-cirrus:amd64 (1.5.2-1build1, automatic), ocaml-findlib:amd64 (1.4-2, automatic), ocaml-base-nox:amd64 (4.01.0-3ubuntu3, automatic), libspice-server1:amd64 (0.12.4-0nocelt2ubuntu1.2, automatic), xserver-xorg-video-qxl:amd64 (0.1.1-0ubuntu3, automatic), libgles2-mesa:amd64 (10.1.3-0ubuntu0.5, automatic), libgl1-mesa-glx:amd64 (10.1.3-0ubuntu0.5), libgl1-mesa-glx:i386 (10.1.3-0ubuntu0.5, automatic), libcurl-ocaml:amd64 (0.5.3-2build4, automatic), ledit:amd64 (2.03-2build1, automatic), xserver-xorg-video-intel:amd64 (2.99.910-0ubuntu1.6, automatic), libxmu-headers:amd64 (1.1.1-1, automatic), xserver-xorg-video-ati:amd64 (7.3.0-1ubuntu3.1, automatic), libglamor0:amd64 (0.6.0-0ubuntu4, automatic), xserver-xorg-video-mach64:amd64 (6.9.4-1bui ld1, automatic), xserver-xorg-video-tdfx:amd64 (1.4.5-1build1, automatic), libfindlib-ocaml:amd64 (1.4-2, automatic), xserver-xorg-video-fbdev:amd64 (0.4.4-1build1, automatic), grace:amd64 (5.1.23-6), libwayland-egl1-mesa:amd64 (10.1.3-0ubuntu0.5, automatic), csh:amd64 (20110502-2ubuntu2), xserver-xorg-video-trident:amd64 (1.3.6-0ubuntu5, automatic), libfindlib-ocaml-dev:amd64 (1.4-2, automatic), xserver-xorg-video-openchrome:amd64 (0.3.3-1build1, automatic), ocaml-interp:amd64 (4.01.0-3ubuntu3, automatic), xserver-xorg:amd64 (7.7+1ubuntu8.1, automatic), libcurl4-gnutls-dev:amd64 (7.35.0-1ubuntu2.5), mwm:amd64 (2.3.4-5ubuntu0.1, automatic), xserver-xorg-video-radeon:amd64 (7.3.0-1ubuntu3.1, automatic), xserver-xorg-video-sis:amd64 (0.10.7-0ubuntu6, automatic), ocaml-compiler-libs:amd64 (4.01.0-3ubuntu3, automatic), xserver-xorg-video-s3:amd64 (0.6.5-0ubuntu4, automatic), xserver-xorg-video-modesetting:amd64 (0.8.1-1build1, automatic), camlp4:amd64 (4.01.0-3ubuntu3, automatic), xmhtml1:amd64 (1.1.7-19, automa tic), xserver-xorg-video-r128:amd64 (6.9.2-1build1, automatic), gnuplot:amd64 (4.6.4-2), xserver-xorg-video-mga:amd64 (1.6.3-1build1, automatic), xserver-xorg-video-nouveau:amd64 (1.0.10-1ubuntu2, automatic) Remove: xserver-xorg-video-neomagic-lts-vivid:amd64 (1.2.8-1ubuntu1~trusty1), libgl1-mesa-dri-lts-vivid:amd64 (10.5.9-2ubuntu1~trusty2), libgl1-mesa-dri-lts-vivid:i386 (10.5.9-2ubuntu1~trusty2), libgl1-mesa-glx-lts-vivid:amd64 (10.5.9-2ubuntu1~trusty2), libgl1-mesa-glx-lts-vivid:i386 (10.5.9-2ubuntu1~trusty2), libglapi-mesa-lts-vivid:amd64 (10.5.9-2ubuntu1~trusty2), libglapi-mesa-lts-vivid:i386 (10.5.9-2ubuntu1~trusty2), xserver-xorg-input-mouse-lts-vivid:amd64 (1.9.1-1~trusty1), xserver-xorg-video-sisusb-lts-vivid:amd64 (0.9.6-2build3~trusty1), libgles1-mesa-lts-vivid:amd64 (10.5.9-2ubuntu1~trusty2), xserver-xorg-input-synaptics-lts-vivid:amd64 (1.8.1-1ubuntu1~trusty1), xserver-xorg-video-nouveau-lts-vivid:amd64 (1.0.11-1ubuntu2build1~trusty1), xserver-xorg-video-all-lts-vivid:amd64 (7.7+7ubuntu3~trusty1), xserver-xorg-input-vmmouse-lts-vivid:amd64 (13.0.0-1ubuntu1~trusty1), xserver-xorg-lts-vivid:amd64 (7.7+7ubuntu3~trusty1), xserver-xorg-input-wacom-lts-vivid:amd64 (0.25.0-0ubuntu1.1~trusty1), xserver-xor g-video-radeon-lts-vivid:amd64 (7.5.0-1ubuntu2~trusty1), xserver-xorg-video-r128-lts-vivid:amd64 (6.9.2-1ubuntu1~trusty1), xserver-xorg-video-tdfx-lts-vivid:amd64 (1.4.6-0ubuntu1~trusty1), xserver-xorg-video-mach64-lts-vivid:amd64 (6.9.4-2ubuntu1~trusty1), libwayland-egl1-mesa-lts-vivid:amd64 (10.5.9-2ubuntu1~trusty2), xserver-xorg-video-siliconmotion-lts-vivid:amd64 (1.7.7-2ubuntu2~trusty1), xserver-xorg-video-savage-lts-vivid:amd64 (2.3.7-2ubuntu4~trusty1), libgbm1-lts-vivid:amd64 (10.5.9-2ubuntu1~trusty2), xserver-xorg-input-all-lts-vivid:amd64 (7.7+7ubuntu3~trusty1), xserver-xorg-video-vmware-lts-vivid:amd64 (13.1.0-0ubuntu1build1~trusty1), xserver-xorg-video-ati-lts-vivid:amd64 (7.5.0-1ubuntu2~trusty1), xserver-xorg-input-evdev-lts-vivid:amd64 (2.9.0-1ubuntu2~trusty1), libgles2-mesa-lts-vivid:amd64 (10.5.9-2ubuntu1~trusty2), xserver-xorg-core-lts-vivid:amd64 (1.17.1-0ubuntu3.1~trusty1), xserver-xorg-video-intel-lts-vivid:amd64 (2.99.917-1~exp1ubuntu2.2~trusty1), xserver-xorg-video-vesa-lts-vivid:amd64 ( 2.3.3-1build3~trusty1), xserver-xorg-video-trident-lts-vivid:amd64 (1.3.6-0ubuntu6build1~trusty1), libegl1-mesa-lts-vivid:amd64 (10.5.9-2ubuntu1~trusty2), xserver-xorg-video-mga-lts-vivid:amd64 (1.6.3-2ubuntu1~trusty1), libcurl4-openssl-dev:amd64 (7.35.0-1ubuntu2.5), xserver-xorg-video-openchrome-lts-vivid:amd64 (0.3.3-1ubuntu1~trusty1), xserver-xorg-video-cirrus-lts-vivid:amd64 (1.5.2-2ubuntu1~trusty1), libxatracker2-lts-vivid:amd64 (10.5.9-2ubuntu1~trusty2), xserver-xorg-video-fbdev-lts-vivid:amd64 (0.4.4-1build3~trusty1) Error: Sub-process /usr/bin/dpkg returned an error code (1) End-Date: 2015-10-25 17:48:05 Start-Date: 2015-10-25 17:48:38 Commandline: apt-get -f install Install: ocaml-nox:amd64 (4.01.0-3ubuntu3, automatic) Error: Sub-process /usr/bin/dpkg returned an error code (1) End-Date: 2015-10-25 17:48:39 Start-Date: 2015-10-25 17:48:57 Commandline: apt-get -f install Install: ocaml-nox:amd64 (4.01.0-3ubuntu3, automatic) Error: Sub-process /usr/bin/dpkg returned an error code (1) End-Date: 2015-10-25 17:48:59 Start-Date: 2015-10-25 17:49:32 Commandline: apt-get -f install Install: ocaml-nox:amd64 (4.01.0-3ubuntu3, automatic) Error: Sub-process /usr/bin/dpkg returned an error code (1) End-Date: 2015-10-25 17:49:33 Start-Date: 2015-10-25 17:51:36 Commandline: apt-get upgrade -f Install: ocaml-nox:amd64 (4.01.0-3ubuntu3, automatic) End-Date: 2015-10-25 17:51:59 Start-Date: 2015-10-25 17:59:57 Commandline: apt-get install libblas3gf libblas-doc libblas-dev liblapack3gf liblapack-doc liblapack-dev Install: libblas3gf:amd64 (1.2.20110419-7), liblapack3gf:amd64 (3.5.0-2ubuntu1), libblas-doc:amd64 (1.2.20110419-7), liblapack-doc:amd64 (3.5.0-2ubuntu1) End-Date: 2015-10-25 18:00:46 Start-Date: 2015-10-25 18:10:48 Commandline: apt-get autoremove Remove: libedit2:i386 (3.1-20130712-2), libepoxy0:amd64 (1.1-1build1), libevdev2:amd64 (1.0.99.2+dfsg-2ubuntu2), libllvm3.6:amd64 (3.6-2ubuntu1~trusty1), libllvm3.6:i386 (3.6-2ubuntu1~trusty1) End-Date: 2015-10-25 18:10:58 Start-Date: 2015-10-25 18:31:30 Commandline: apt-get install nvidia-current Install: screen-resolution-extra:amd64 (0.17.1, automatic), libcuda1-304:amd64 (304.128-0ubuntu0.0.1, automatic), nvidia-settings:amd64 (331.20-0ubuntu8, automatic), nvidia-304:amd64 (304.128-0ubuntu0.0.1, automatic), nvidia-opencl-icd-304:amd64 (304.128-0ubuntu0.0.1, automatic), nvidia-current:amd64 (304.128-0ubuntu0.0.1) End-Date: 2015-10-25 18:32:42 Start-Date: 2015-10-25 19:15:54 Commandline: apt-get install nvidia-cuda-dev nvidia-cuda-toolkit Install: libvdpau-dev:amd64 (0.7-1ubuntu0.1, automatic), libcurand5.5:amd64 (5.5.22-3ubuntu1, automatic), libcufftw5.5:amd64 (5.5.22-3ubuntu1, automatic), nvidia-cuda-doc:amd64 (5.5.22-3ubuntu1, automatic), nvidia-visual-profiler:amd64 (5.5.22-3ubuntu1, automatic), libcuinj64-5.5:amd64 (5.5.22-3ubuntu1, automatic), libnppi5.5:amd64 (5.5.22-3ubuntu1, automatic), libcufft5.5:amd64 (5.5.22-3ubuntu1, automatic), nvidia-cuda-gdb:amd64 (5.5.22-3ubuntu1, automatic), libcuda1-340:amd64 (340.93-0ubuntu0.0.1, automatic), libcublas5.5:amd64 (5.5.22-3ubuntu1, automatic), libcudart5.5:amd64 (5.5.22-3ubuntu1, automatic), libnvtoolsext1:amd64 (5.5.22-3ubuntu1, automatic), nvidia-340:amd64 (340.93-0ubuntu0.0.1, automatic), nvidia-cuda-toolkit:amd64 (5.5.22-3ubuntu1), bbswitch-dkms:amd64 (0.7-2ubuntu1, automatic), nvidia-opencl-icd-340:amd64 (340.93-0ubuntu0.0.1, automatic), nvidia-prime:amd64 (0.6.2, automatic), libnvvm2:amd64 (5.5.22-3ubuntu1, automatic), libthrust-dev:amd64 (1.7.0-1, automatic), libcusparse5.5:amd64 (5.5. 22-3ubuntu1, automatic), nvidia-cuda-dev:amd64 (5.5.22-3ubuntu1), libnppc5.5:amd64 (5.5.22-3ubuntu1, automatic), nvidia-profiler:amd64 (5.5.22-3ubuntu1, automatic), ocl-icd-opencl-dev:amd64 (2.1.3-4, automatic), opencl-headers:amd64 (1.2-2013.10.23-1, automatic), libnpps5.5:amd64 (5.5.22-3ubuntu1, automatic) Remove: libcuda1-304:amd64 (304.128-0ubuntu0.0.1), nvidia-304:amd64 (304.128-0ubuntu0.0.1), nvidia-opencl-icd-304:amd64 (304.128-0ubuntu0.0.1), nvidia-current:amd64 (304.128-0ubuntu0.0.1) End-Date: 2015-10-25 19:17:51 Start-Date: 2015-10-26 09:09:15 Commandline: apt-get install python-pycuda nvidia-cuda-gdb Install: python-pycuda-doc:amd64 (2013.1.1+git20140310-1ubuntu1, automatic), python-pytools:amd64 (2013.5.7-1, automatic), python-pycuda:amd64 (2013.1.1+git20140310-1ubuntu1), libboost-python1.54.0:amd64 (1.54.0-4ubuntu3.1, automatic), libboost-thread1.54.0:amd64 (1.54.0-4ubuntu3.1, automatic), python-mako:amd64 (0.9.1-1, automatic) End-Date: 2015-10-26 09:09:36 Start-Date: 2015-10-26 09:38:24 Commandline: apt-get install nvidia-nsight nvidia-modprobe Install: nvidia-modprobe:amd64 (340.24-1~ubuntu14.04.1), nvidia-nsight:amd64 (5.5.22-3ubuntu1) End-Date: 2015-10-26 09:38:34 Start-Date: 2015-10-26 10:11:54 Commandline: apt-get install hg-fast-export Install: hg-fast-export:amd64 (20120921-1), mercurial-common:amd64 (2.8.2-1ubuntu1.3, automatic), mercurial:amd64 (2.8.2-1ubuntu1.3, automatic) End-Date: 2015-10-26 10:11:59 Start-Date: 2015-10-26 10:15:16 Commandline: apt-get install flex bison Install: bison:amd64 (3.0.2.dfsg-2), flex:amd64 (2.5.35-10.1ubuntu2), libfl-dev:amd64 (2.5.35-10.1ubuntu2, automatic), libbison-dev:amd64 (3.0.2.dfsg-2, automatic) End-Date: 2015-10-26 10:15:21 Start-Date: 2015-10-26 10:20:17 Commandline: apt-get install python-sphinx Install: sphinx-common:amd64 (1.2.2+dfsg-1ubuntu1.1, automatic), sphinx-doc:amd64 (1.2.2+dfsg-1ubuntu1.1, automatic), python-roman:amd64 (2.0.0-1, automatic), docutils-common:amd64 (0.11-3, automatic), python-sphinx:amd64 (1.2.2+dfsg-1ubuntu1.1), python-docutils:amd64 (0.11-3, automatic), python-pygments:amd64 (1.6+dfsg-1ubuntu1, automatic), docutils-doc:amd64 (0.11-3, automatic) End-Date: 2015-10-26 10:20:48 Start-Date: 2015-10-26 12:42:28 Commandline: apt-get install xsel Install: xsel:amd64 (1.2.0-2) End-Date: 2015-10-26 12:42:30 Start-Date: 2015-10-26 14:25:06 Commandline: apt-get install -y texlive-latex-recommended Install: latex-beamer:amd64 (3.24-1, automatic), ps2eps:amd64 (1.68-1build1, automatic), prosper:amd64 (1.00.4+cvs.2007.05.01-4, automatic), texlive-generic-recommended:amd64 (2013.20140215-1, automatic), texlive-latex-recommended:amd64 (2013.20140215-1), texlive-latex-base-doc:amd64 (2013.20140215-1, automatic), latex-xcolor:amd64 (2.11-1.1, automatic), texlive-pstricks-doc:amd64 (2013.20140215-2, automatic), texlive-latex-base:amd64 (2013.20140215-1, automatic), texlive-font-utils:amd64 (2013.20140215-2, automatic), texlive-latex-recommended-doc:amd64 (2013.20140215-1, automatic), pgf:amd64 (2.10-1, automatic), texlive-pstricks:amd64 (2013.20140215-2, automatic), texlive-extra-utils:amd64 (2013.20140215-2, automatic) Error: Sub-process /usr/bin/dpkg returned an error code (1) End-Date: 2015-10-26 14:25:29 Start-Date: 2015-10-26 14:48:48 Commandline: apt-get autoremove End-Date: 2015-10-26 14:49:01 Start-Date: 2015-10-26 14:52:05 Commandline: apt-get build-dep latex2html Install: preview-latex-style:amd64 (11.87-1ubuntu2, automatic), texlive-latex-extra:amd64 (2013.20140215-2), texlive-pictures:amd64 (2013.20140215-1, automatic) End-Date: 2015-10-26 14:52:16 Start-Date: 2015-10-26 14:57:33 Commandline: apt-get install latex2html Install: fonts-texgyre:amd64 (2.004.2-4, automatic), texlive-fonts-recommended:amd64 (2013.20140215-1, automatic), latex2html:amd64 (2008-debian1-10), tex-gyre:amd64 (2.004.2-4, automatic), texlive-fonts-recommended-doc:amd64 (2013.20140215-1, automatic), tipa:amd64 (1.3-19, automatic) End-Date: 2015-10-26 14:57:54 Start-Date: 2015-10-26 18:54:17 Commandline: apt-get install python3-pip Install: libpython3-dev:amd64 (3.4.0-0ubuntu2, automatic), libpython3.4-dev:amd64 (3.4.3-1ubuntu1~14.04.3, automatic), python3.4-dev:amd64 (3.4.3-1ubuntu1~14.04.3, automatic), python3-distlib:amd64 (0.1.8-1ubuntu1, automatic), python3-pip:amd64 (1.5.4-1ubuntu3), python3-wheel:amd64 (0.24.0-1~ubuntu1, automatic), python3-setuptools:amd64 (3.3-1ubuntu2, automatic), python3-html5lib:amd64 (0.999-3~ubuntu1, automatic), python3-colorama:amd64 (0.2.5-0.1ubuntu2, automatic), python3-dev:amd64 (3.4.0-0ubuntu2, automatic) End-Date: 2015-10-26 18:54:28 Start-Date: 2015-10-26 18:57:33 Commandline: apt-get purge python-biom-format Purge: python-biom-format:amd64 (1.1.2-1) End-Date: 2015-10-26 18:57:35 Start-Date: 2015-10-26 18:57:55 Commandline: apt-get purge python-numpy Purge: python-tables-lib:amd64 (3.1.1-0ubuntu1), python-pytools:amd64 (2013.5.7-1), python-numpy:amd64 (1.8.2-0ubuntu0.1), pymol:amd64 (1.7.0.0-1), python-pandas:amd64 (0.13.1-2ubuntu2), python-pycuda:amd64 (2013.1.1+git20140310-1ubuntu1), python-statsmodels-lib:amd64 (0.5.0+git13-g8e07d34-1ubuntu2), python-h5py:amd64 (2.2.1-1build2), python-pandas-lib:amd64 (0.13.1-2ubuntu2), mgltools-cadd:amd64 (1.5.7~rc1~cvs.20130519-2), python-numexpr:amd64 (2.2.2-4build1), python-statsmodels:amd64 (0.5.0+git13-g8e07d34-1ubuntu2), python-mpltoolkits.basemap:amd64 (1.0.7+dfsg-1), python-patsy:amd64 (0.2.1-3), mgltools-bhtree:amd64 (1.5.7~rc1~cvs.20130519-1), python-matplotlib:amd64 (1.3.1-1ubuntu5), python-mpikmeans:amd64 (1.5-1build3), python-netcdf:amd64 (2.9.4-1), mgltools-mglutil:amd64 (1.5.7~rc1~cvs.20130519-1), python-cogent:amd64 (1.5.3-2), mgltools-sff:amd64 (1.5.7~rc1~cvs.20130519-2), python-tables:amd64 (3.1.1-0ubuntu1), python-scientific:amd64 (2.9.4-1), python-biopython:amd64 (1.63-1), mgltools-vision:amd64 (1 .5.7~rc1~cvs.20130519-1), python-scipy:amd64 (0.13.3-1build1), python-mpi:amd64 (2.9.4-1) End-Date: 2015-10-26 18:58:21 Start-Date: 2015-10-26 19:35:43 Commandline: apt-get -y install mgltools-cadd Install: python-numpy:amd64 (1.8.2-0ubuntu0.1, automatic), mgltools-cadd:amd64 (1.5.7~rc1~cvs.20130519-2), mgltools-bhtree:amd64 (1.5.7~rc1~cvs.20130519-1, automatic), mgltools-mglutil:amd64 (1.5.7~rc1~cvs.20130519-1, automatic), mgltools-sff:amd64 (1.5.7~rc1~cvs.20130519-2, automatic), mgltools-vision:amd64 (1.5.7~rc1~cvs.20130519-1, automatic) Error: Sub-process /usr/bin/dpkg returned an error code (1) End-Date: 2015-10-26 19:35:48 Start-Date: 2015-10-26 19:35:49 Commandline: apt-get -y install mgltools-vision