crashes upon launch; ClippingPlane index out of range

[Daniel Asarnow]

Binary package hint: mgltools-pmv

runPmv returns the following error. The loading progress window appears and goes to 100%, however the error occurs early. Pressing enter removes the window and returns to command prompt.

$ runPmv
Run PMV from /usr/lib/python2.5/site-packages/Pmv
Resource file used to customize PMV: /home/da/.mgltools/1.5.4/Pmv/_pmvrc

Warning (from warnings module):
  File "/usr/lib/python2.5/site-packages/DejaVu/Clip.py", line 98
    self.Ri = glCleanRotMat(self.Ri)
DeprecationWarning: PyArray_FromDims: use PyArray_SimpleNew.
>>>
Warning (from warnings module):
  File "/usr/lib/python2.5/site-packages/DejaVu/Clip.py", line 98
    self.Ri = glCleanRotMat(self.Ri)
DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr.
>>> Traceback (most recent call last):
  File "/usr/lib/python2.5/site-packages/Pmv/__init__.py", line 371, in runPmv
    title=title, withShell= not interactive, verbose=False, gui=gui)
  File "/usr/lib/python2.5/site-packages/Pmv/moleculeViewer.py", line 315, in __init__
    verbose=verbose, trapExceptions=trapExceptions)
  File "/usr/lib/python2.5/site-packages/ViewerFramework/VF.py", line 345, in __init__
    verbose=verbose)
  File "/usr/lib/python2.5/site-packages/ViewerFramework/VFGUI.py", line 270, in __init__
    cnf = {"addScenarioButton": False})
  File "/usr/lib/python2.5/site-packages/DejaVu/Viewer.py", line 675, in __init__
    cp = ClippingPlane(self.rootObject, i, self)
  File "/usr/lib/python2.5/site-packages/DejaVu/Clip.py", line 42, in __init__
    self.id = self.clipPlaneNames[num]
IndexError: list index out of range

Please include this Traceback in your bug report.

hit enter to continue

[Daniel Asarnow (dasarnow)]

Note: also prevents Autodock Tools from running.

[Daniel Asarnow (dasarnow)]

Closer inspection of error message plus occurrence of error when running 'runAdt' suggest error is in DejaVu.

[Launchpad Janitor (janitor)]

This bug was fixed in the package mgltools-dejavu - 1.5.6~rc2+cvs.20110926-1

---------------
mgltools-dejavu (1.5.6~rc2+cvs.20110926-1) unstable; urgency=low

  * New upstream version (lp: #500453).
 -- Ubuntu Archive Auto-Sync <email address hidden> Mon, 17 Oct 2011 17:07:55 +0000