mash 2.3+dfsg-6build1 source package in Ubuntu
Changelog
mash (2.3+dfsg-6build1) oracular; urgency=medium * Rebuild against new libgsl28. -- Gianfranco Costamagna <email address hidden> Tue, 30 Jul 2024 08:46:27 +0200
Upload details
- Uploaded by:
- Gianfranco Costamagna
- Uploaded to:
- Oracular
- Original maintainer:
- Debian Med
- Architectures:
- amd64 arm64 loong64 mips64el ppc64el s390x alpha ppc64 riscv64 all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Oracular | proposed | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| mash_2.3+dfsg.orig.tar.xz | 3.3 MiB | c0ca5ce831e97d211df92ddf0dcd68d4478fa1ddcebf1f567b469b70b47f0776 |
| mash_2.3+dfsg-6build1.debian.tar.xz | 2.1 MiB | 7040eb76904c348c51e03a0e77d43dbd735f1839db139e4acf212465ec4e54a7 |
| mash_2.3+dfsg-6build1.dsc | 2.3 KiB | 5cd34ebc49e783fb98556dd9f3f130eb4612c4a0ddfe16b03278a143f1971f8e |
Available diffs
Binary packages built by this source
- libmash-dev: development headers and static library for Mash
This package contains C++ development headers and a static library to
build custom programs utilizing Mash, a MinHash based genome distance
estimator.
- mash: fast genome and metagenome distance estimation using MinHash
Mash uses MinHash locality-sensitive hashing to reduce large biosequences to
a representative sketch and rapidly estimate pairwise distances between
genomes or metagenomes. Mash sketch databases effectively delineate known
species boundaries, allow construction of approximate phylogenies, and can be
searched in seconds using assembled genomes or raw sequencing runs from
Illumina, Pacific Biosciences, and Oxford Nanopore.
For metagenomics, Mash scales to thousands of samples and can replicate Human
Microbiome Project and Global Ocean Survey results in a fraction of the time.
- mash-dbgsym: debug symbols for mash
- mash-doc: documentation for Mash
This package contains further documentation (tutorials, explanations,
etc.) for Mash, a MinHash based genome distance estimator. The documentation
is provided in HTML format.
