mapsembler2 2.2.4+dfsg1-4 source package in Ubuntu
Changelog
mapsembler2 (2.2.4+dfsg1-4) unstable; urgency=medium
* d/salsa-ci.yml: disable i386 build and reprotest in Salsa CI
* d/control: updated uploader address
* d/control: standard version 4.5.1
* d/mans/mapsembler2_kissreads.1: fix typo-in-manual-page
* spelling.patch: fix spelling-error-in-binary
* add gcc11.patch (Closes: #984226)
* d/s/lintian-overrides: override notices about components not sent, or
otherwise missing about upstream, who is inactive for a while.
* Standards-Version: 4.6.0 (routine-update)
-- Étienne Mollier <email address hidden> Fri, 20 Aug 2021 10:21:44 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- amd64 arm64 kfreebsd-amd64 ppc64el s390x
- Section:
- misc
- Urgency:
- Medium Urgency
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| mapsembler2_2.2.4+dfsg1-4.dsc | 2.2 KiB | 9c00683679e9b6fe8db1bac016ac724625b993b7fd1b5e130d00b06be82f4de5 |
| mapsembler2_2.2.4+dfsg1.orig.tar.xz | 1.3 MiB | 44b215f922ed34c3a167eb512012792e7d777df17d3dda6a2c4a5a0959e8b824 |
| mapsembler2_2.2.4+dfsg1-4.debian.tar.xz | 23.9 KiB | e24f25f87d54b83d0685c102f8f71d694771e696372484835fb827fdc6b21246 |
Available diffs
- diff from 2.2.4+dfsg1-3 to 2.2.4+dfsg1-4 (3.3 KiB)
No changes file available.
Binary packages built by this source
- mapsembler2: bioinformatics targeted assembly software
Mapsembler2 is a targeted assembly software.
It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not)
and a set of input sequences (starters).
.
It first determines if each starter is read-coherent, e.g. whether reads
confirm the presence of each starter in the original sequence.
Then for each read-coherent starter, Mapsembler2 outputs its sequence
neighborhood as a linear sequence or as a graph, depending on the user choice.
.
Mapsembler2 may be used for (not limited to):
- Validate an assembled sequence (input as starter), e.g. from a de
Bruijn graph assembly where read-coherence was not enforced.
- Checks if a gene (input as starter) has an homolog in a set of reads
- Checks if a known enzyme is present in a metagenomic NGS read set.
- Enrich unmappable reads by extending them, possibly making them mappable
- Checks what happens at the extremities of a contig
- Remove contaminants or symbiont reads from a read set
- mapsembler2-dbgsym: debug symbols for mapsembler2
