mapsembler2 2.2.4+dfsg-3build2 source package in Ubuntu
Changelog
mapsembler2 (2.2.4+dfsg-3build2) focal; urgency=medium * No-change rebuild for libgcc-s1 package name change. -- Matthias Klose <email address hidden> Mon, 23 Mar 2020 07:19:32 +0100
Upload details
- Uploaded by:
- Matthias Klose
- Uploaded to:
- Focal
- Original maintainer:
- Debian Med
- Architectures:
- amd64 arm64 armel armhf hurd-i386 i386 kfreebsd-amd64 kfreebsd-i386 ppc64el s390x
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Focal | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| mapsembler2_2.2.4+dfsg.orig.tar.xz | 1.3 MiB | 5a3c581d9408e103f3e721ce85293cbc3af96392b05e0adfaff95753e784371c |
| mapsembler2_2.2.4+dfsg-3build2.debian.tar.xz | 12.4 KiB | 7c871f3caadc158db07c6907f0998a6512f2796b3bb2a99cecbc022792688e40 |
| mapsembler2_2.2.4+dfsg-3build2.dsc | 2.2 KiB | f5559a71f09d6f382cecb8889648d8103f050961c842e167619f444a768675ac |
Available diffs
Binary packages built by this source
- mapsembler2: bioinformatics targeted assembly software
Mapsembler2 is a targeted assembly software.
It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not)
and a set of input sequences (starters).
.
It first determines if each starter is read-coherent, e.g. whether reads
confirm the presence of each starter in the original sequence.
Then for each read-coherent starter, Mapsembler2 outputs its sequence
neighborhood as a linear sequence or as a graph, depending on the user choice.
.
Mapsembler2 may be used for (not limited to):
- Validate an assembled sequence (input as starter), e.g. from a de
Bruijn graph assembly where read-coherence was not enforced.
- Checks if a gene (input as starter) has an homolog in a set of reads
- Checks if a known enzyme is present in a metagenomic NGS read set.
- Enrich unmappable reads by extending them, possibly making them mappable
- Checks what happens at the extremities of a contig
- Remove contaminants or symbiont reads from a read set
- mapsembler2-dbgsym: No summary available for mapsembler2-dbgsym in ubuntu groovy.
No description available for mapsembler2-dbgsym in ubuntu groovy.
