ltrsift 1.0.2-4 source package in Ubuntu
Changelog
ltrsift (1.0.2-4) unstable; urgency=low * remove menu file -- Sascha Steinbiss <email address hidden> Sat, 17 Oct 2015 15:24:49 +0000
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Low Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| ltrsift_1.0.2-4.dsc | 2.1 KiB | f71992b0d0172b7a14c3fd2fffcef0739a35f3c2e5599e9d289550fdbe81756f |
| ltrsift_1.0.2.orig.tar.gz | 7.0 MiB | aa9332f880f85fc5b9fda7ebafdf8a728ce814a4b71daedb6a915d05df88a237 |
| ltrsift_1.0.2-4.debian.tar.xz | 10.4 KiB | ea01cc0bf6efefe3b9ba9d440009459089e76b02c5f6e86d40a443e8e1c87b80 |
Available diffs
- diff from 1.0.2-3 to 1.0.2-4 (619 bytes)
No changes file available.
Binary packages built by this source
- ltrsift: postprocessing and classification of LTR retrotransposons
LTRsift is a graphical desktop tool for semi-automatic postprocessing of de
novo predicted LTR retrotransposon annotations, such as the ones generated by
LTRharvest and LTRdigest. Its user-friendly interface displays LTR
retrotransposon candidates, their putative families and their internal
structure in a hierarchical fashion, allowing the user to "sift" through the
sometimes large results of de novo prediction software. It also offers
customizable filtering and classification functionality.
- ltrsift-dbg: postprocessing and classification of LTR retrotransposons, with debug symbols
This package contains debug information stripped from LTRsift.
You may decide to install it to help identifying issues, typically
to help communication with upstream developers.
- ltrsift-dbgsym: debug symbols for package ltrsift
LTRsift is a graphical desktop tool for semi-automatic postprocessing of de
novo predicted LTR retrotransposon annotations, such as the ones generated by
LTRharvest and LTRdigest. Its user-friendly interface displays LTR
retrotransposon candidates, their putative families and their internal
structure in a hierarchical fashion, allowing the user to "sift" through the
sometimes large results of de novo prediction software. It also offers
customizable filtering and classification functionality.
- ltrsift-examples: example data for LTRsift
This package contains test sequences (gzipped FASTA) and annotations (GFF3)
from the Drosophila melanogaster (fruit fly) genome, to be used in an example
process of postprocessing and classification of newly detected LTR
retrotransposons. Scripts for using LTRsift to encode the sequences into a
format accepted by LTRsift are included as well.
