This problem occurs in Fedora 26 Alpha 4.11.0-0.rc5.git0.1.fc26.x86_64 kernel.

4KB sector disk
[root@test04 ~]# cat /sys/block/sdd/queue/physical_block_size
4096
[root@test04 ~]# cat /sys/block/sdd/queue/logical_block_size
512
[root@test04 ~]# cat /sys/block/sdd/queue/optimal_io_size
33553920
[root@test04 ~]# cat /sys/block/sdd/queue/minimum_io_size
4096


512B sector disk
[root@test04 ~]# cat /sys/block/sde/queue/physical_block_size
512
[root@test04 ~]# cat /sys/block/sde/queue/logical_block_size
512
[root@test04 ~]# cat /sys/block/sde/queue/optimal_io_size
33553920
[root@test04 ~]# cat /sys/block/sde/queue/minimum_io_size
512

==== dmesg uas probe ===============================
[   14.599778] usb 2-3.1: USB disconnect, device number 3
[   14.599780] usb 2-3.1.4: USB disconnect, device number 6
[   14.599782] usb 2-3.1.4.1: USB disconnect, device number 7
[   14.627609] usb 2-3.1.4.2: USB disconnect, device number 8
[   14.772222] usb 2-3.2: USB disconnect, device number 4
[  250.074028] usb 3-2: new SuperSpeed USB device number 2 using xhci_hcd
[  250.170483] usb 3-2: New USB device found, idVendor=2109, idProduct=0813
[  250.170488] usb 3-2: New USB device strings: Mfr=1, Product=2, SerialNumber=0
[  250.170491] usb 3-2: Product: USB3.0 Hub
[  250.170494] usb 3-2: Manufacturer: VIA Labs, Inc.
[  250.172733] hub 3-2:1.0: USB hub found
[  250.172952] hub 3-2:1.0: 4 ports detected
[  250.768633] usb 2-2: new high-speed USB device number 9 using xhci_hcd
[  250.938243] usb 2-2: New USB device found, idVendor=2109, idProduct=2813
[  250.938245] usb 2-2: New USB device strings: Mfr=1, Product=2, SerialNumber=0
[  250.938246] usb 2-2: Product: USB2.0 Hub
[  250.938248] usb 2-2: Manufacturer: VIA Labs, Inc.
[  250.939668] hub 2-2:1.0: USB hub found
[  250.940530] hub 2-2:1.0: 4 ports detected
[  311.076093] usb 3-2.4: new SuperSpeed USB device number 3 using xhci_hcd
[  311.088982] usb 3-2.4: New USB device found, idVendor=0584, idProduct=0276
[  311.088984] usb 3-2.4: New USB device strings: Mfr=2, Product=3, SerialNumber=1
[  311.088985] usb 3-2.4: Product: RS-EC32-U31R RAID1
[  311.088986] usb 3-2.4: Manufacturer: RATOC Systems,Inc.
[  311.088987] usb 3-2.4: SerialNumber: 32311643000A
[  311.099686] usbcore: registered new interface driver usb-storage
[  311.103616] scsi host4: uas
[  311.103658] usbcore: registered new interface driver uas
[  311.529050] scsi 4:0:0:0: Direct-Access     HGST HDN 724040ALE640     MJAO PQ: 0 ANSI: 6
[  311.551404] sd 4:0:0:0: Attached scsi generic sg2 type 0
[  311.556400] sd 4:0:0:0: [sdc] 7813988353 512-byte logical blocks: (4.00 TB/3.64 TiB)
[  311.556401] sd 4:0:0:0: [sdc] 4096-byte physical blocks
[  311.556525] sd 4:0:0:0: [sdc] Write Protect is off
[  311.556526] sd 4:0:0:0: [sdc] Mode Sense: 43 00 00 00
[  311.556685] sd 4:0:0:0: [sdc] Write cache: enabled, read cache: enabled, doesn't support DPO or FUA
[  311.610063]  sdc: sdc1
[  311.669432] sd 4:0:0:0: [sdc] Attached SCSI disk
[  311.864341] device-mapper: table: 253:2: adding target device sdc1 caused an alignment inconsistency: physical_block_size=4096, logical_block_size=512, alignment_offset=0, start=33553920
[  311.864342] device-mapper: table: 253:2: adding target device sdc1 caused an alignment inconsistency: physical_block_size=4096, logical_block_size=512, alignment_offset=0, start=33553920
[  336.660255] usb 3-2.3: new SuperSpeed USB device number 4 using xhci_hcd
[  336.673142] usb 3-2.3: New USB device found, idVendor=0584, idProduct=0276
[  336.673144] usb 3-2.3: New USB device strings: Mfr=2, Product=3, SerialNumber=1
[  336.673145] usb 3-2.3: Product: RS-EC32-U31R RAID1
[  336.673147] usb 3-2.3: Manufacturer: RATOC Systems,Inc.
[  336.673148] usb 3-2.3: SerialNumber: 32311643007F
[  336.678007] scsi host5: uas
[  337.083352] scsi 5:0:0:0: Direct-Access     HGST HDN 724040ALE640     MJAO PQ: 0 ANSI: 6
[  337.100578] sd 5:0:0:0: Attached scsi generic sg3 type 0
[  337.106973] sd 5:0:0:0: [sdd] 7813988353 512-byte logical blocks: (4.00 TB/3.64 TiB)
[  337.106974] sd 5:0:0:0: [sdd] 4096-byte physical blocks
[  337.107097] sd 5:0:0:0: [sdd] Write Protect is off
[  337.107097] sd 5:0:0:0: [sdd] Mode Sense: 43 00 00 00
[  337.107262] sd 5:0:0:0: [sdd] Write cache: enabled, read cache: enabled, doesn't support DPO or FUA
[  337.195187] sd 5:0:0:0: [sdd] Attached SCSI disk
[  348.468155] usb 3-2.1: new SuperSpeed USB device number 5 using xhci_hcd
[  348.480858] usb 3-2.1: New USB device found, idVendor=0480, idProduct=a006
[  348.480860] usb 3-2.1: New USB device strings: Mfr=2, Product=3, SerialNumber=1
[  348.480862] usb 3-2.1: Product: ASM1351
[  348.480863] usb 3-2.1: Manufacturer: Asmedia
[  348.480864] usb 3-2.1: SerialNumber: 123456789116
[  348.484753] scsi host6: uas
[  348.485135] scsi 6:0:0:0: Direct-Access     ASMT     2135             0    PQ: 0 ANSI: 6
[  348.511359] sd 6:0:0:0: Attached scsi generic sg4 type 0
[  348.511458] sd 6:0:0:0: [sde] Spinning up disk...
[  349.532209] .
[  350.556390] .
[  351.580536] .
[  352.604676] .
[  353.628784] .
[  354.652963] .
[  355.677096] .
[  356.701239] .
[  356.701311] ready
[  356.722300] sd 6:0:0:0: [sde] 976773168 512-byte logical blocks: (500 GB/466 GiB)
[  356.722411] sd 6:0:0:0: [sde] Write Protect is off
[  356.722413] sd 6:0:0:0: [sde] Mode Sense: 43 00 00 00
[  356.722571] sd 6:0:0:0: [sde] Write cache: enabled, read cache: enabled, doesn't support DPO or FUA
[  356.727204]  sde: sde1
[  356.728023] sd 6:0:0:0: [sde] Attached SCSI disk
[  378.390343] usb 3-2.2: new SuperSpeed USB device number 6 using xhci_hcd
[  378.403284] usb 3-2.2: New USB device found, idVendor=174c, idProduct=1351
[  378.403288] usb 3-2.2: New USB device strings: Mfr=2, Product=3, SerialNumber=1
[  378.403291] usb 3-2.2: Product: USB3.1 Device
[  378.403293] usb 3-2.2: Manufacturer: Generic
[  378.403295] usb 3-2.2: SerialNumber: 12345678912B
[  378.410036] scsi host7: uas
[  378.411280] scsi 7:0:0:0: Direct-Access     ST2000DM 001-1CH164       0    PQ: 0 ANSI: 6
[  378.434589] sd 7:0:0:0: Attached scsi generic sg5 type 0
[  378.434996] sd 7:0:0:0: [sdf] 3907029168 512-byte logical blocks: (2.00 TB/1.82 TiB)
[  378.434997] sd 7:0:0:0: [sdf] 4096-byte physical blocks
[  378.435106] sd 7:0:0:0: [sdf] Write Protect is off
[  378.435107] sd 7:0:0:0: [sdf] Mode Sense: 43 00 00 00
[  378.435272] sd 7:0:0:0: [sdf] Write cache: enabled, read cache: enabled, doesn't support DPO or FUA
[  378.484995]  sdf: sdf1
[  378.485968] sd 7:0:0:0: [sdf] Attached SCSI disk
[  407.387390] ata1.00: Enabling discard_zeroes_data
[  407.580994]  sde: sde1
[  407.585529]  sdf: sdf1
==============================================================