libssw 1.1-7 source package in Ubuntu
Changelog
libssw (1.1-7) unstable; urgency=medium
* debian/patches/malloc: Include definition for malloc & free
* debian/include/simde: sync with upstream 2019-12-27
(098d150385ba618f945f953bc4d5ae306fd22f2e)
* debian/libssw0.symbols: start tracking the library symbols
-- Michael R. Crusoe <email address hidden> Thu, 26 Dec 2019 16:59:08 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| libssw_1.1-7.dsc | 2.3 KiB | 370e899a160f596be7b443431706256b78126d789c554ec5ab64e7a779270b52 |
| libssw_1.1.orig.tar.gz | 11.8 MiB | cdbc20740daeb188ed39413ea5ff9ae4cf72c4d7ccff1d2de2cac0446d64d99f |
| libssw_1.1-7.debian.tar.xz | 49.1 KiB | 7ea46242596040c02fa8e9911fc51095e5348f7c4a15a0f4b5352470b7aa1251 |
Available diffs
- diff from 1.1-6 to 1.1-7 (10.6 KiB)
No changes file available.
Binary packages built by this source
- libssw-dev: Development headers and static libraries for libssw
This package provides development headers and static libraries for libssw,
a fast implementation of the Smith-Waterman algorithm using
Single-Instruction Multiple-Data (SIMD) instructions to parallelize the
algorithm at the instruction level.
- libssw-java: Java bindings for libssw
This package provides JNI based Java bindings for libssw, a fast
implementation of the Smith-Waterman algorithm using Single-Instruction
Multiple-Data (SIMD) instructions to parallelize the algorithm at the
instruction level.
- libssw-java-dbgsym: debug symbols for libssw-java
- libssw0: fast SIMD parallelized implementation of the Smith-Waterman algorithm
SSW is a fast implementation of the Smith-Waterman algorithm, which uses the
Single-Instruction Multiple-Data (SIMD) instructions to parallelize the
algorithm at the instruction level. SSW library provides an API that can be
flexibly used by programs written in C, C++ and other languages. The library
can do protein and genome alignment directly.
Current version of this implementation is ~50 times faster than an ordinary
Smith-Waterman. It can return the Smith-Waterman score, alignment location
and traceback path (cigar) of the optimal alignment accurately; and return
the sub-optimal alignment score and location heuristically.
- libssw0-dbgsym: debug symbols for libssw0
- ssw-align: Smith-Waterman aligner based on libssw
This package provides a command-line aligner based on the libssw library,
a fast SIMD accelerated implementation of the Smith-Waterman algorithm.
The input files can be in FASTA or FASTQ format. Both target and query files
can contain multiple sequences. Each sequence in the query file will be
aligned with all sequences in the target file. Output is provided in SAM or
BLAST-like text format.
- ssw-align-dbgsym: debug symbols for ssw-align
