libssw 1.1-11 source package in Ubuntu

Changelog

libssw (1.1-11) unstable; urgency=medium

  * Team upload
  * Make sure library will be build before it is used for linking
  * debhelper-compat 13 (routine-update)

 -- Andreas Tille <email address hidden>  Thu, 13 Aug 2020 13:42:07 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Groovy release universe misc

Downloads

File Size SHA-256 Checksum
libssw_1.1-11.dsc 2.3 KiB 786710db8182f7d796e57ad402b3b37d1a0d48e22826af40652a5eb542a34507
libssw_1.1.orig.tar.gz 11.8 MiB cdbc20740daeb188ed39413ea5ff9ae4cf72c4d7ccff1d2de2cac0446d64d99f
libssw_1.1-11.debian.tar.xz 52.8 KiB cdbf483ed936be0418fd2bdb5a2cfab5650128f140b9dfb4efaa7db6e37b70d1

Available diffs

No changes file available.

Binary packages built by this source

libssw-dev: Development headers and static libraries for libssw

 This package provides development headers and static libraries for libssw,
 a fast implementation of the Smith-Waterman algorithm using
 Single-Instruction Multiple-Data (SIMD) instructions to parallelize the
 algorithm at the instruction level.

libssw-java: Java bindings for libssw

 This package provides JNI based Java bindings for libssw, a fast
 implementation of the Smith-Waterman algorithm using Single-Instruction
 Multiple-Data (SIMD) instructions to parallelize the algorithm at the
 instruction level.

libssw-java-dbgsym: debug symbols for libssw-java
libssw0: fast SIMD parallelized implementation of the Smith-Waterman algorithm

 SSW is a fast implementation of the Smith-Waterman algorithm, which uses the
 Single-Instruction Multiple-Data (SIMD) instructions to parallelize the
 algorithm at the instruction level. SSW library provides an API that can be
 flexibly used by programs written in C, C++ and other languages. The library
 can do protein and genome alignment directly.
 Current version of this implementation is ~50 times faster than an ordinary
 Smith-Waterman. It can return the Smith-Waterman score, alignment location
 and traceback path (cigar) of the optimal alignment accurately; and return
 the sub-optimal alignment score and location heuristically.

libssw0-dbgsym: debug symbols for libssw0
ssw-align: Smith-Waterman aligner based on libssw

 This package provides a command-line aligner based on the libssw library,
 a fast SIMD accelerated implementation of the Smith-Waterman algorithm.
 The input files can be in FASTA or FASTQ format. Both target and query files
 can contain multiple sequences. Each sequence in the query file will be
 aligned with all sequences in the target file. Output is provided in SAM or
 BLAST-like text format.

ssw-align-dbgsym: debug symbols for ssw-align